1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Yagi, H.
Konno, H.
Murakami-Fuse, T.
Oroguchi, H.
Akutsu, T.
Ikeguchi, M.
Hisabori, T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Biochem.J.
BIJOAK
0043
0264-6021
425
85
94
10.1042/BJ20091247
19785575
Structural and functional analysis of the intrinsic inhibitor subunit epsilon of F1-ATPase from photosynthetic organisms.
2010
10.2210/pdb2rq6/pdb
pdb_00002rq6
14764.803
ATP synthase epsilon chain
3.6.3.14
1
man
polymer
ATP synthase F1 sector epsilon subunit, F-ATPase epsilon subunit
no
no
MVMTVRVIAPDKTVWDAPAEEVILPSTTGQLGILSNHAPLLTALETGVMRVRQDREWVAIALMGGFAEVENNEVTILVNG
AERGDTIDLEKAKAEFAAAQAALAQAEQGESKQAKIQATQAFRRARARLQAAGGVVEI
MVMTVRVIAPDKTVWDAPAEEVILPSTTGQLGILSNHAPLLTALETGVMRVRQDREWVAIALMGGFAEVENNEVTILVNG
AERGDTIDLEKAKAEFAAAQAALAQAEQGESKQAKIQATQAFRRARARLQAAGGVVEI
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
BP-1
sample
197221
Thermosynechococcus elongatus
562
Escherichia coli
pET23a
vector
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
1
0
2010-01-12
1
1
2011-07-13
1
2
2022-03-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
BMRB
Y
PDBJ
2009-03-03
REL
REL
structures with the least restraint violations
100
20
1
2D 1H-15N HSQC
3D HNCACB
3D CBCA(CO)NH
2D 1H-1H NOESY
3D H(CCO)NH
3D 1H-15N NOESY
3D 1H-13C NOESY
3D HBHA(CO)NH
1.0
mM
[U-99% 15N]
1.0
mM
[U-99% 13C; U-99% 15N]
50
6.8
AMBIENT
303
K
torsion angle dynamics
1
minimized average
1.0 mM [U-99% 15N] ATP SYNTHASE EPSILON CHAIN-1, 1.0 mM [U-99% 13C; U-99% 15N] ATP SYNTHASE EPSILON CHAIN-2, 90% H2O/10% D2O
90% H2O/10% D2O
GUNTERT, MUMENTHALER
refinement
CYANA
1.0.6
Bruker Biospin
structure solution
XwinNMR
600
Bruker
DRX
BRUKER DRX
500
Bruker
DRX
Bruker DRX
MET
1
n
1
MET
1
A
VAL
2
n
2
VAL
2
A
MET
3
n
3
MET
3
A
THR
4
n
4
THR
4
A
VAL
5
n
5
VAL
5
A
ARG
6
n
6
ARG
6
A
VAL
7
n
7
VAL
7
A
ILE
8
n
8
ILE
8
A
ALA
9
n
9
ALA
9
A
PRO
10
n
10
PRO
10
A
ASP
11
n
11
ASP
11
A
LYS
12
n
12
LYS
12
A
THR
13
n
13
THR
13
A
VAL
14
n
14
VAL
14
A
TRP
15
n
15
TRP
15
A
ASP
16
n
16
ASP
16
A
ALA
17
n
17
ALA
17
A
PRO
18
n
18
PRO
18
A
ALA
19
n
19
ALA
19
A
GLU
20
n
20
GLU
20
A
GLU
21
n
21
GLU
21
A
VAL
22
n
22
VAL
22
A
ILE
23
n
23
ILE
23
A
LEU
24
n
24
LEU
24
A
PRO
25
n
25
PRO
25
A
SER
26
n
26
SER
26
A
THR
27
n
27
THR
27
A
THR
28
n
28
THR
28
A
GLY
29
n
29
GLY
29
A
GLN
30
n
30
GLN
30
A
LEU
31
n
31
LEU
31
A
GLY
32
n
32
GLY
32
A
ILE
33
n
33
ILE
33
A
LEU
34
n
34
LEU
34
A
SER
35
n
35
SER
35
A
ASN
36
n
36
ASN
36
A
HIS
37
n
37
HIS
37
A
ALA
38
n
38
ALA
38
A
PRO
39
n
39
PRO
39
A
LEU
40
n
40
LEU
40
A
LEU
41
n
41
LEU
41
A
THR
42
n
42
THR
42
A
ALA
43
n
43
ALA
43
A
LEU
44
n
44
LEU
44
A
GLU
45
n
45
GLU
45
A
THR
46
n
46
THR
46
A
GLY
47
n
47
GLY
47
A
VAL
48
n
48
VAL
48
A
MET
49
n
49
MET
49
A
ARG
50
n
50
ARG
50
A
VAL
51
n
51
VAL
51
A
ARG
52
n
52
ARG
52
A
GLN
53
n
53
GLN
53
A
ASP
54
n
54
ASP
54
A
ARG
55
n
55
ARG
55
A
GLU
56
n
56
GLU
56
A
TRP
57
n
57
TRP
57
A
VAL
58
n
58
VAL
58
A
ALA
59
n
59
ALA
59
A
ILE
60
n
60
ILE
60
A
ALA
61
n
61
ALA
61
A
LEU
62
n
62
LEU
62
A
MET
63
n
63
MET
63
A
GLY
64
n
64
GLY
64
A
GLY
65
n
65
GLY
65
A
PHE
66
n
66
PHE
66
A
ALA
67
n
67
ALA
67
A
GLU
68
n
68
GLU
68
A
VAL
69
n
69
VAL
69
A
GLU
70
n
70
GLU
70
A
ASN
71
n
71
ASN
71
A
ASN
72
n
72
ASN
72
A
GLU
73
n
73
GLU
73
A
VAL
74
n
74
VAL
74
A
THR
75
n
75
THR
75
A
ILE
76
n
76
ILE
76
A
LEU
77
n
77
LEU
77
A
VAL
78
n
78
VAL
78
A
ASN
79
n
79
ASN
79
A
GLY
80
n
80
GLY
80
A
ALA
81
n
81
ALA
81
A
GLU
82
n
82
GLU
82
A
ARG
83
n
83
ARG
83
A
GLY
84
n
84
GLY
84
A
ASP
85
n
85
ASP
85
A
THR
86
n
86
THR
86
A
ILE
87
n
87
ILE
87
A
ASP
88
n
88
ASP
88
A
LEU
89
n
89
LEU
89
A
GLU
90
n
90
GLU
90
A
LYS
91
n
91
LYS
91
A
ALA
92
n
92
ALA
92
A
LYS
93
n
93
LYS
93
A
ALA
94
n
94
ALA
94
A
GLU
95
n
95
GLU
95
A
PHE
96
n
96
PHE
96
A
ALA
97
n
97
ALA
97
A
ALA
98
n
98
ALA
98
A
ALA
99
n
99
ALA
99
A
GLN
100
n
100
GLN
100
A
ALA
101
n
101
ALA
101
A
ALA
102
n
102
ALA
102
A
LEU
103
n
103
LEU
103
A
ALA
104
n
104
ALA
104
A
GLN
105
n
105
GLN
105
A
ALA
106
n
106
ALA
106
A
GLU
107
n
107
GLU
107
A
GLN
108
n
108
GLN
108
A
GLY
109
n
109
GLY
109
A
GLU
110
n
110
GLU
110
A
SER
111
n
111
SER
111
A
LYS
112
n
112
LYS
112
A
GLN
113
n
113
GLN
113
A
ALA
114
n
114
ALA
114
A
LYS
115
n
115
LYS
115
A
ILE
116
n
116
ILE
116
A
GLN
117
n
117
GLN
117
A
ALA
118
n
118
ALA
118
A
THR
119
n
119
THR
119
A
GLN
120
n
120
GLN
120
A
ALA
121
n
121
ALA
121
A
PHE
122
n
122
PHE
122
A
ARG
123
n
123
ARG
123
A
ARG
124
n
124
ARG
124
A
ALA
125
n
125
ALA
125
A
ARG
126
n
126
ARG
126
A
ALA
127
n
127
ALA
127
A
ARG
128
n
128
ARG
128
A
LEU
129
n
129
LEU
129
A
GLN
130
n
130
GLN
130
A
ALA
131
n
131
ALA
131
A
ALA
132
n
132
ALA
132
A
GLY
133
n
133
GLY
133
A
GLY
134
n
134
GLY
134
A
VAL
135
n
135
VAL
135
A
VAL
136
n
136
VAL
136
A
GLU
137
n
137
GLU
137
A
ILE
138
n
138
ILE
138
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ALA
19
A
O
ALA
19
A
N
MET
3
A
N
MET
3
A
N
ILE
8
A
N
ILE
8
A
O
ILE
76
A
O
ILE
76
A
O
THR
75
A
O
THR
75
A
N
GLU
68
A
N
GLU
68
A
O
ALA
67
A
O
ALA
67
A
N
THR
42
A
N
THR
42
A
O
ILE
33
A
O
ILE
33
A
N
VAL
22
A
N
VAL
22
A
N
GLU
21
A
N
GLU
21
A
O
ARG
52
A
O
ARG
52
A
N
VAL
51
A
N
VAL
51
A
O
VAL
58
A
O
VAL
58
A
N
ALA
61
A
N
ALA
61
A
O
GLU
82
A
O
GLU
82
1
A
LYS
12
177.51
-170.00
1
A
TRP
15
179.86
-177.55
1
A
ALA
19
-178.32
149.40
1
A
HIS
37
-48.39
159.34
1
A
ASP
54
-177.81
-74.54
1
A
MET
63
-67.52
-169.75
1
A
GLU
70
-172.25
122.17
1
A
ASP
85
-94.65
38.93
1
A
SER
111
-65.67
90.51
2
A
LYS
12
177.54
-171.18
2
A
VAL
14
-98.43
-69.17
2
A
TRP
15
-179.86
-175.13
2
A
GLU
21
-172.10
131.79
2
A
HIS
37
-48.41
159.25
2
A
ASP
54
-179.19
-61.79
2
A
MET
63
-77.25
-169.60
2
A
GLU
70
-172.26
123.14
2
A
ASP
85
-94.76
39.02
2
A
SER
111
-65.87
89.94
2
A
VAL
136
-176.56
-35.70
3
A
LYS
12
176.65
-168.80
3
A
VAL
14
-76.61
-74.40
3
A
TRP
15
178.72
-169.51
3
A
ALA
19
-178.50
149.81
3
A
HIS
37
-47.87
159.22
3
A
GLN
53
-85.14
-74.70
3
A
ASP
54
-179.24
34.35
3
A
ARG
55
-179.29
-48.24
3
A
LEU
62
-163.13
118.67
3
A
MET
63
-68.15
-169.46
3
A
GLU
70
-172.40
125.61
3
A
ASN
79
-118.05
51.50
3
A
ASP
85
-94.03
39.09
3
A
LYS
112
-102.01
-76.24
4
A
LYS
12
176.88
-168.81
4
A
VAL
14
-90.64
-74.46
4
A
GLU
20
-91.51
-69.10
4
A
HIS
37
-48.71
159.27
4
A
GLN
53
-82.84
-74.55
4
A
ASP
54
-179.07
37.19
4
A
ARG
55
-178.88
-49.70
4
A
MET
63
-109.92
-169.68
4
A
GLU
70
-172.62
118.07
4
A
SER
111
-65.56
92.69
5
A
LYS
12
177.09
-169.38
5
A
VAL
14
-97.70
-69.30
5
A
TRP
15
-179.34
-175.80
5
A
GLU
20
-130.92
-39.79
5
A
ASP
54
-173.38
89.52
5
A
MET
63
-76.26
-169.53
5
A
GLU
70
-172.42
121.57
5
A
ASP
85
-94.67
38.97
5
A
LYS
112
-102.10
-74.85
6
A
LYS
12
176.31
-169.43
6
A
VAL
14
-99.51
-69.75
6
A
TRP
15
-177.71
-176.38
6
A
GLU
20
-135.62
-40.99
6
A
GLN
53
-85.99
-74.15
6
A
ASP
54
-178.44
35.72
6
A
ARG
55
-177.57
-48.67
6
A
GLU
70
-172.17
121.82
6
A
ASP
85
-94.72
38.95
6
A
LYS
112
-102.08
-78.86
6
A
GLN
113
-90.35
-67.70
6
A
VAL
136
-174.25
-37.72
7
A
LYS
12
176.54
-169.05
7
A
VAL
14
-104.08
-74.20
7
A
ALA
19
-178.86
139.10
7
A
GLU
21
-171.84
131.88
7
A
HIS
37
-48.55
159.38
7
A
GLN
53
-86.33
-74.73
7
A
ASP
54
-179.26
34.42
7
A
ARG
55
-179.34
-48.30
7
A
GLU
70
-172.09
120.09
7
A
LEU
77
-101.06
79.16
7
A
ARG
83
-94.98
33.17
7
A
ASP
85
-94.63
38.12
7
A
SER
111
-68.01
98.58
7
A
VAL
135
-172.41
132.86
8
A
LYS
12
176.69
-176.15
8
A
VAL
14
-104.13
-70.10
8
A
TRP
15
179.07
173.63
8
A
GLU
20
-133.84
-40.55
8
A
ASP
54
-178.72
-71.25
8
A
GLU
70
-171.54
116.34
8
A
LYS
112
-102.00
-76.18
8
A
VAL
136
-172.33
136.64
9
A
VAL
2
65.18
151.93
9
A
LYS
12
176.73
-169.15
9
A
VAL
14
-93.51
-69.74
9
A
TRP
15
179.88
-175.06
9
A
ALA
19
-178.28
139.08
9
A
HIS
37
-46.92
159.39
9
A
ASP
54
-176.72
-58.84
9
A
ALA
61
-58.91
109.62
9
A
MET
63
-62.32
-169.70
9
A
GLU
70
-172.59
123.80
9
A
ASN
79
-95.54
33.23
9
A
ASP
85
-94.65
38.98
9
A
LYS
112
-102.07
-76.22
9
A
VAL
136
-172.87
138.95
10
A
LYS
12
177.41
-170.54
10
A
VAL
14
-90.73
-72.33
10
A
TRP
15
179.98
-170.58
10
A
HIS
37
-48.07
159.16
10
A
ASP
54
-178.00
-74.25
10
A
GLU
70
-172.57
124.48
10
A
ASP
85
-94.66
39.00
10
A
LYS
112
-102.17
-79.60
10
A
GLN
113
-90.45
-67.93
10
A
VAL
136
-175.48
-36.94
11
A
LYS
12
177.05
-169.52
11
A
VAL
14
-91.43
-70.33
11
A
GLU
21
-170.04
131.99
11
A
SER
26
-127.86
-169.85
11
A
HIS
37
-48.46
159.20
11
A
GLN
53
-86.57
-74.59
11
A
ASP
54
-179.19
34.35
11
A
ARG
55
-179.37
-47.98
11
A
MET
63
-68.88
-168.13
11
A
GLU
70
-172.56
122.77
11
A
ASP
85
-94.44
39.01
11
A
SER
111
-66.56
93.60
12
A
VAL
2
64.47
109.53
12
A
LYS
12
177.32
-169.51
12
A
VAL
14
-88.24
-74.42
12
A
TRP
15
178.71
-169.70
12
A
GLU
20
-67.12
-70.65
12
A
SER
26
-128.94
-169.96
12
A
HIS
37
-49.23
159.31
12
A
ASP
54
-173.16
-72.91
12
A
GLU
70
-172.59
121.81
12
A
LEU
77
-119.80
72.14
12
A
ASP
85
-94.73
38.90
12
A
SER
111
-64.75
91.21
12
A
VAL
135
-176.69
137.28
13
A
LYS
12
176.51
-169.12
13
A
TRP
15
-179.44
-175.11
13
A
GLU
20
-131.61
-39.83
13
A
HIS
37
-48.60
159.26
13
A
ASP
54
-179.00
-74.44
13
A
MET
63
-75.64
-169.20
13
A
GLU
70
-172.55
121.90
13
A
ASP
85
-94.47
39.09
13
A
SER
111
-64.80
91.78
14
A
LYS
12
176.81
-169.25
14
A
VAL
14
-106.04
-70.54
14
A
TRP
15
-173.99
-178.00
14
A
ASP
54
-171.47
-69.27
14
A
MET
63
-69.00
-168.21
14
A
GLU
70
-170.95
117.34
14
A
ASP
85
-94.51
39.04
14
A
SER
111
-67.68
92.01
15
A
VAL
2
71.62
-69.16
15
A
LYS
12
174.91
-169.56
15
A
TRP
15
179.55
-176.94
15
A
ARG
55
-151.34
-41.97
15
A
GLU
70
-172.19
131.85
15
A
ASN
79
-107.33
49.60
15
A
ASP
85
-95.01
33.81
15
A
SER
111
-66.61
91.39
16
A
LYS
12
175.29
147.77
16
A
VAL
14
-61.17
-72.63
16
A
TRP
15
179.48
-174.04
16
A
ALA
19
-177.04
138.93
16
A
HIS
37
-43.99
151.91
16
A
ASP
54
-179.25
-74.85
16
A
MET
63
-65.47
-167.64
16
A
GLU
70
-172.44
108.84
16
A
ASP
85
-94.56
38.95
16
A
LYS
112
-102.06
-75.98
16
A
VAL
135
-61.37
99.62
17
A
LYS
12
173.34
168.60
17
A
VAL
14
-89.82
-71.51
17
A
TRP
15
179.76
-169.87
17
A
HIS
37
-49.10
159.22
17
A
GLN
53
-76.52
-74.73
17
A
ASP
54
-179.13
34.31
17
A
ARG
55
-179.34
-48.25
17
A
GLU
70
-172.37
123.50
17
A
SER
111
-67.05
95.78
18
A
VAL
2
-174.65
138.21
18
A
LYS
12
176.53
-176.19
18
A
VAL
14
-100.53
-74.61
18
A
ALA
19
-178.61
144.79
18
A
HIS
37
-49.05
159.24
18
A
ASP
54
-178.06
-56.63
18
A
GLU
70
-172.33
124.78
18
A
ASP
85
-95.23
39.24
18
A
LYS
112
-102.20
-81.02
18
A
GLN
113
-91.09
-68.74
18
A
VAL
136
-174.75
-36.86
19
A
VAL
2
66.03
120.07
19
A
LYS
12
175.40
-176.28
19
A
TRP
15
-177.93
-175.93
19
A
ALA
19
-171.34
139.08
19
A
SER
26
-129.96
-169.12
19
A
HIS
37
-44.36
157.67
19
A
ASP
54
-179.21
-59.25
19
A
MET
63
-75.91
-168.99
19
A
GLU
70
-173.20
123.18
19
A
ASN
79
-109.70
49.26
19
A
LYS
112
-101.97
-76.35
19
A
VAL
136
-176.57
-35.77
20
A
LYS
12
177.04
-169.23
20
A
VAL
14
-88.79
-70.26
20
A
TRP
15
178.89
176.88
20
A
ASP
54
-177.99
89.62
20
A
ALA
61
-68.79
97.14
20
A
MET
63
-76.88
-168.88
20
A
GLU
70
-172.22
129.95
20
A
ASP
85
-94.46
39.01
20
A
SER
111
-62.46
93.27
Solution structure of the epsilon subunit of the F1-atpase from thermosynechococcus elongatus BP-1
1
N
N
A
ASP
88
A
ASP
88
HELX_P
A
GLU
110
A
GLU
110
1
1
23
A
ALA
114
A
ALA
114
HELX_P
A
ALA
132
A
ALA
132
1
2
19
HYDROLASE
ATP SYNTHASE, F1FO ATP SYNTHASE, F1-ATPASE, EPSILON SUBUNIT, ATP SYNTHESIS, CF1, HYDROGEN ION TRANSPORT, HYDROLASE, ION TRANSPORT, MEMBRANE, THYLAKOID, TRANSPORT, CF(1)
ATPE_THEEB
UNP
1
1
Q8DLG7
MVMTVRVIAPDKTVWDAPAEEVILPSTTGQLGILSNHAPLLTALETGVMRVRQDREWVAIALMGGFAEVENNEVTILVNG
AERGDTIDLEKAKAEFAAAQAALAQAEQGESKQAKIQATQAFRRARARLQAAGGVVEI
1
138
2RQ6
1
138
Q8DLG7
A
1
1
138
5
5
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
13
A
THR
13
A
ALA
19
A
ALA
19
A
MET
3
A
MET
3
A
ILE
8
A
ILE
8
A
VAL
74
A
VAL
74
A
VAL
78
A
VAL
78
A
GLY
65
A
GLY
65
A
VAL
69
A
VAL
69
A
LEU
40
A
LEU
40
A
LEU
44
A
LEU
44
A
LEU
31
A
LEU
31
A
LEU
34
A
LEU
34
A
GLU
21
A
GLU
21
A
LEU
24
A
LEU
24
A
GLY
47
A
GLY
47
A
ARG
52
A
ARG
52
A
TRP
57
A
TRP
57
A
LEU
62
A
LEU
62
A
ALA
81
A
ALA
81
A
GLU
82
A
GLU
82