1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Mashima, T. Nishikawa, F. Kamatari, Y.O. Fujiwara, H. Nishikawa, S. Kuwata, K. Katahira, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking UK Nucleic Acids Res. NARHAD 0389 0305-1048 41 1355 1362 10.1093/nar/gks1132 23180780 Anti-prion activity of an RNA aptamer and its structural basis 2013 10.2210/pdb2rsk/pdb pdb_00002rsk 4033.512 RNA (5'-R(*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*A)-3') 2 syn polymer 1387.562 partial binding peptide of Major prion protein 2 syn polymer no no GGAGGAGGAGGA GGAGGAGGAGGA A,B polyribonucleotide no no GQWNKPSKPKTN GQWNKPSKPKTN C,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n 7.242 3 6 A 11 A 2 -95.726 A_G11:G2_A 1 -9.858 0.182 0.151 3.461 -7.480 3 6 A 4 A 1 81.218 A_G4:G1_A 2 7.119 -0.720 0.024 -4.021 6.878 3 6 B 13 B 16 -83.303 B_G13:G16_B 3 -7.143 0.683 0.020 3.958 -6.740 3 6 B 14 B 23 95.831 B_G14:G23_B 4 9.004 -0.227 -0.059 -3.437 -2.550 57.387 A A 11 4 -0.704 A A 2 1 -2.575 -0.675 0.012 -2.166 AA_G11G4:G1G2_AA 1 -2.893 3.014 57.316 -2.284 0.111 -0.001 179.643 A B 4 13 -64.591 A B 1 16 -0.117 -129.174 -0.614 -3.025 AB_G4G13:G16G1_BA 2 117.111 -58.559 172.734 -1.514 0.306 2.605 -57.138 B B 13 14 0.702 B B 16 23 2.584 -0.671 -0.017 2.224 BB_G13G14:G23G16_BB 3 3.253 3.403 -57.050 -2.296 0.124 database_2 pdbx_database_status pdbx_nmr_software struct_ref_seq repository Initial release Data collection Database references Other 1 0 2013-02-13 1 1 2023-06-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _pdbx_nmr_software.name _struct_ref_seq.db_align_beg _struct_ref_seq.db_align_end BMRB Y PDBJ 2012-03-08 REL REL REL REL synthetic peptide 9913 Bovine Bos taurus sample structures with the lowest energy 100 10 1 2D 1H-1H NOESY 2D 1H-1H NOESY 2D 1H-1H NOESY 2D 1H-1H NOESY 2D 1H-1H TOCSY 2D 1H-1H TOCSY 2D DQF-COSY 2D DQF-COSY 2D 1H-13C HSQC JRHMBC 1 mM 1 mM 10 mM 10 mM 0.01 mM 3 mM 1 mM 1 mM 10 mM 10 mM 0.01 mM 3 mM 10 6.2 ambient 278 K 10 6.2 ambient 303 K simulated annealing 1 lowest energy 1mM RNA-1, 1mM P16-2, 10mM potassium phosphate-3, 10mM potassium chloride-4, 0.01mM DSS-5, 3mM sodium azide-6, 95% H2O/5% D2O 95% H2O/5% D2O 1mM RNA-7, 1mM P16-8, 10mM potassium phosphate-9, 10mM potassium chloride-10, 0.01mM DSS-11, 3mM sodium azide-12, 100% D2O 100% D2O Schwieters, Kuszewski, Tjandra and Clore refinement X-PLOR NIH 2.26 Bruker Biospin collection XwinNMR Bruker Biospin collection TopSpin Goddard chemical shift assignment Sparky Goddard peak picking Sparky Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax processing NMRPipe Cornilescu, Delaglio and Bax data analysis TALOS 600 Bruker DRX Bruker DRX G 1 n 1 G 1 A G 2 n 2 G 2 A A 3 n 3 A 3 A G 4 n 4 G 4 A G 5 n 5 G 5 A A 6 n 6 A 6 A G 7 n 7 G 7 A G 8 n 8 G 8 A A 9 n 9 A 9 A G 10 n 10 G 10 A G 11 n 11 G 11 A A 12 n 12 A 12 A G 13 n 1 G 13 B G 14 n 2 G 14 B A 15 n 3 A 15 B G 16 n 4 G 16 B G 17 n 5 G 17 B A 18 n 6 A 18 B G 19 n 7 G 19 B G 20 n 8 G 20 B A 21 n 9 A 21 B G 22 n 10 G 22 B G 23 n 11 G 23 B A 24 n 12 A 24 B GLY 25 n 1 GLY 25 C GLN 26 n 2 GLN 26 C TRP 27 n 3 TRP 27 C ASN 28 n 4 ASN 28 C LYS 29 n 5 LYS 29 C PRO 30 n 6 PRO 30 C SER 31 n 7 SER 31 C LYS 32 n 8 LYS 32 C PRO 33 n 9 PRO 33 C LYS 34 n 10 LYS 34 C THR 35 n 11 THR 35 C ASN 36 n 12 ASN 36 C GLY 37 n 1 GLY 37 D GLN 38 n 2 GLN 38 D TRP 39 n 3 TRP 39 D ASN 40 n 4 ASN 40 D LYS 41 n 5 LYS 41 D PRO 42 n 6 PRO 42 D SER 43 n 7 SER 43 D LYS 44 n 8 LYS 44 D PRO 45 n 9 PRO 45 D LYS 46 n 10 LYS 46 D THR 47 n 11 THR 47 D ASN 48 n 12 ASN 48 D author_defined_assembly 4 tetrameric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 D D HZ1 HD21 LYS ASN 44 48 1.19 1 D D HB2 HE1 GLN TRP 38 39 1.22 1 C C HB2 HE1 GLN TRP 26 27 1.23 1 B B HO2' OP2 G G 19 20 1.28 1 B B H22 O2' G G 17 19 1.37 1 A A H22 O2' G G 5 7 1.38 1 B B HO2' O5' G G 22 23 1.42 1 A B H62 O3' A A 6 24 1.43 1 A A H1 N7 G G 8 11 1.44 1 B B H1 N7 G G 20 23 1.44 1 B B HO5' OP1 G G 13 14 1.45 1 B B N3 H1' G A 23 24 1.47 1 A A N3 H1' G A 11 12 1.48 1 A A HO2' O5' G G 10 11 1.48 1 A A O2' H8 A G 6 7 1.48 1 A A H22 N7 G A 1 3 1.48 1 B B O2' H8 A G 18 19 1.49 1 B B H22 N7 G A 13 15 1.50 1 B B O4' H61 G A 13 15 1.51 1 A B O3' H62 A A 12 18 1.52 1 A B N3 HO2' G A 10 18 1.52 1 A A N3 H62 G A 7 9 1.52 1 A A O4' H61 G A 1 3 1.52 1 A B HO2' N3 A G 6 22 1.53 1 A B O4' H1' G G 1 16 1.54 1 B B N3 H62 G A 19 21 1.56 1 B B N7 H21 G G 14 23 1.58 1 A A N7 H21 G G 2 11 1.59 1 A A O6 O6 G G 8 11 1.98 1 B B O6 O6 G G 20 23 1.99 1 C C O N LYS SER 29 31 2.11 1 D D O N LYS SER 41 43 2.11 1 A C O6 NE1 G TRP 11 27 2.15 1 A A O6 O6 G G 2 11 2.15 1 B D N7 O G GLN 17 38 2.16 1 B B O6 O6 G G 14 23 2.16 1 B D O6 NE1 G TRP 23 39 2.16 1 A C N7 O G GLN 5 26 2.17 1 A A O6 O6 G G 4 7 2.18 2 A A HO2' O4' G A 11 12 1.08 2 D D HB2 HE1 GLN TRP 38 39 1.22 2 C C HB2 HE1 GLN TRP 26 27 1.23 2 A A H21 HO2' G A 4 6 1.25 2 A A H22 O2' G G 5 7 1.41 2 A B H62 O3' A A 6 24 1.42 2 A A O2' H8 A G 6 7 1.44 2 B B H22 O2' G G 17 19 1.44 2 B B H1 N7 G G 20 23 1.45 2 A A H1 N7 G G 8 11 1.45 2 B B N3 H1' G A 23 24 1.47 2 A A N3 H1' G A 11 12 1.47 2 A A N3 H62 G A 7 9 1.50 2 B B O2' H8 A G 18 19 1.51 2 A B N3 HO2' G A 10 18 1.51 2 B B N3 H62 G A 19 21 1.52 2 B B H22 N7 G A 13 15 1.52 2 A A H22 N7 G A 1 3 1.53 2 A B H1' O4' G G 4 13 1.56 2 A A O4' H61 G A 1 3 1.56 2 A A N7 H21 G G 2 11 1.57 2 B B O4' H61 G A 13 15 1.60 2 A A O2' O4' G A 11 12 1.78 2 A A O6 O6 G G 8 11 1.99 2 B B O6 O6 G G 20 23 1.99 2 C C O N LYS SER 29 31 2.11 2 D D O N LYS SER 41 43 2.12 2 A C N7 O G GLN 5 26 2.15 2 B D N7 O G GLN 17 38 2.15 2 A B O2' N3 A G 6 22 2.15 2 B D O6 NE1 G TRP 23 39 2.16 2 A C O6 NE1 G TRP 11 27 2.16 2 B B O6 O6 G G 16 19 2.16 2 A A O6 O6 G G 2 11 2.16 2 B B O6 O6 G G 14 23 2.16 2 A A O6 O6 G G 4 7 2.17 2 B D O5' OXT G ASN 22 48 2.19 2 A B O6 O6 G G 7 19 2.19 3 C C HB2 HE1 GLN TRP 26 27 1.23 3 D D HB2 HE1 GLN TRP 38 39 1.24 3 D D HZ1 HD21 LYS ASN 44 48 1.26 3 B D HO2' HZ2 G LYS 20 46 1.31 3 A A HO2' OP2 G A 2 3 1.31 3 A B H62 O3' A A 6 24 1.32 3 C C HZ2 HD21 LYS ASN 34 36 1.32 3 B B O2' H8 A G 18 19 1.41 3 A A H22 O2' G G 5 7 1.42 3 B B H1 N7 G G 20 23 1.45 3 A A H1 N7 G G 8 11 1.45 3 A B H1' O4' G G 4 13 1.45 3 A B O3' H62 A A 12 18 1.45 3 A A N3 H1' G A 11 12 1.47 3 B B H22 O2' G G 17 19 1.49 3 A A N3 H62 G A 7 9 1.49 3 A A H22 N7 G A 1 3 1.51 3 B B N3 H1' G A 23 24 1.51 3 A B O4' H1' G G 1 16 1.51 3 B B H4' OP1 G A 14 15 1.56 3 B B H1' OP2 G G 13 14 1.56 3 A A O4' H61 G A 1 3 1.57 3 B B N3 H62 G A 19 21 1.57 3 B B H21 N7 G G 19 22 1.59 3 B B N7 H21 G G 14 23 1.59 3 A B O2' N3 A G 6 22 1.93 3 B B O6 O6 G G 20 23 1.99 3 A A O6 O6 G G 8 11 1.99 3 A B N3 O2' G A 10 18 2.08 3 D D O N LYS SER 41 43 2.11 3 C C O N LYS SER 29 31 2.12 3 A B O2' OP1 G G 10 19 2.12 3 A C N7 O G GLN 5 26 2.14 3 A A O6 O6 G G 4 7 2.16 3 A C O6 NE1 G TRP 11 27 2.16 3 A A O6 O6 G G 2 11 2.16 3 B B O6 O6 G G 16 19 2.16 3 B D O6 NE1 G TRP 23 39 2.17 3 B D N7 O G GLN 17 38 2.18 4 D D HZ1 HD21 LYS ASN 44 48 1.17 4 D D HB2 HE1 GLN TRP 38 39 1.22 4 C C HB2 HE1 GLN TRP 26 27 1.23 4 B B HO2' OP2 G G 19 20 1.29 4 B B H22 O2' G G 17 19 1.35 4 A B HO3' N7 A A 12 18 1.36 4 A B H62 O3' A A 6 24 1.39 4 B B HO2' OP1 A G 21 22 1.41 4 A A H22 O2' G G 5 7 1.42 4 B B H1 N7 G G 20 23 1.43 4 A A H1 N7 G G 8 11 1.43 4 A B O3' H62 A A 12 18 1.45 4 A A O2' H8 A G 6 7 1.46 4 A B N3 HO2' G A 10 18 1.47 4 A A N3 H1' G A 11 12 1.47 4 B B N3 H1' G A 23 24 1.47 4 B B O2' H8 A G 18 19 1.48 4 A A HO2' O5' G G 10 11 1.50 4 A A N3 H62 G A 7 9 1.51 4 A B H1' O4' G G 4 13 1.52 4 A A H22 N7 G A 1 3 1.54 4 B B H22 N7 G A 13 15 1.54 4 A B OP1 HO2' G G 7 22 1.55 4 A B O4' H1' G G 1 16 1.57 4 A A HO2' OP2 G A 5 6 1.58 4 B B N3 H62 G A 19 21 1.58 4 B B N7 H21 G G 14 23 1.58 4 A A H4' O5' G A 5 6 1.59 4 A A N7 H21 G G 2 11 1.59 4 A A O4' H61 G A 1 3 1.59 4 B B O6 O6 G G 20 23 1.98 4 A A O6 O6 G G 8 11 1.99 4 A B O2' N3 A G 6 22 2.01 4 C C O N LYS SER 29 31 2.11 4 A B OP1 O2' G G 7 22 2.11 4 D D O N LYS SER 41 43 2.11 4 A C N7 O G GLN 5 26 2.15 4 B D N7 O G GLN 17 38 2.15 4 A C O6 NE1 G TRP 11 27 2.15 4 A A O6 O6 G G 4 7 2.15 4 A A O6 O6 G G 2 11 2.16 4 B B O6 O6 G G 14 23 2.16 4 B D O6 NE1 G TRP 23 39 2.17 4 A B O6 O6 G G 7 19 2.19 5 D D HZ2 HD21 LYS ASN 44 48 1.16 5 C C HZ3 HD22 LYS ASN 32 36 1.19 5 D D HB2 HE1 GLN TRP 38 39 1.23 5 C C HB2 HE1 GLN TRP 26 27 1.23 5 A A H21 HO2' G A 4 6 1.24 5 A A HO5' OP1 G G 1 2 1.26 5 A B O3' H62 A A 12 18 1.40 5 B B O2' H8 A G 18 19 1.42 5 A A H22 O2' G G 5 7 1.44 5 B B H22 O2' G G 17 19 1.44 5 A A H1 N7 G G 8 11 1.44 5 A A O4' H61 G A 1 3 1.46 5 B B H1 N7 G G 20 23 1.46 5 A A O2' H8 A G 6 7 1.47 5 B B N3 H1' G A 23 24 1.48 5 A A N3 H1' G A 11 12 1.48 5 A A H22 N7 G A 1 3 1.48 5 B B H22 N7 G A 13 15 1.50 5 A A N3 H62 G A 7 9 1.51 5 B B O4' H61 G A 13 15 1.51 5 B B N3 H62 G A 19 21 1.51 5 A B O4' H1' G G 1 16 1.53 5 B B HO2' OP2 G A 23 24 1.54 5 B B N7 H21 G G 14 23 1.57 5 C C O HD21 THR ASN 35 36 1.59 5 A B H1' OP1 G G 10 19 1.59 5 B B O2' O4' G A 23 24 1.79 5 B B O6 O6 G G 20 23 1.99 5 A A O6 O6 G G 8 11 1.99 5 A B N3 O2' G A 10 18 2.08 5 D D O N LYS SER 41 43 2.11 5 A B O2' OP1 G G 10 19 2.12 5 C C O N LYS SER 29 31 2.13 5 B D N7 O G GLN 17 38 2.15 5 A A O6 O6 G G 2 11 2.15 5 A C O6 NE1 G TRP 11 27 2.16 5 A C N7 O G GLN 5 26 2.16 5 B D O6 NE1 G TRP 23 39 2.16 5 A A O6 O6 G G 4 7 2.16 5 B B O6 O6 G G 14 23 2.16 5 B B O6 O6 G G 16 19 2.17 5 A B O2' N3 A G 6 22 2.18 5 A A O6 O6 G G 2 5 2.19 6 D D HZ3 H LYS THR 46 47 1.17 6 C C HZ2 HD21 LYS ASN 32 36 1.19 6 D D HB2 HE1 GLN TRP 38 39 1.22 6 C C HB2 HE1 GLN TRP 26 27 1.23 6 A B H62 O3' A A 6 24 1.38 6 B B H22 O2' G G 17 19 1.40 6 A A O2' H8 A G 6 7 1.43 6 B B O2' H8 A G 18 19 1.43 6 A A H22 O2' G G 5 7 1.43 6 A B HO3' N7 A A 12 18 1.44 6 B B H1 N7 G G 20 23 1.44 6 A A HO2' OP2 G A 2 3 1.45 6 A A H1 N7 G G 8 11 1.46 6 B B N3 H1' G A 23 24 1.48 6 A A N3 H1' G A 11 12 1.49 6 B B HO2' OP1 A G 15 16 1.49 6 A A N3 H62 G A 7 9 1.50 6 A B N3 HO2' G A 10 18 1.51 6 A B N7 HO3' A A 6 24 1.52 6 B B N3 H62 G A 19 21 1.52 6 B B H22 N7 G A 13 15 1.53 6 A A H22 N7 G A 1 3 1.54 6 A B O4' H1' G G 1 16 1.54 6 A A HO2' OP2 G A 11 12 1.55 6 B B O4' H61 G A 13 15 1.57 6 A B H1' O4' G G 4 13 1.57 6 A A N7 H21 G G 2 11 1.57 6 A A O4' H61 G A 1 3 1.57 6 D D O HG1 LYS THR 46 47 1.58 6 A A O2' O4' G A 11 12 1.79 6 A A O6 O6 G G 8 11 1.99 6 B B O6 O6 G G 20 23 1.99 6 A B N3 O2' G A 10 18 2.05 6 A B O2' N3 A G 6 22 2.07 6 C C O N LYS SER 29 31 2.12 6 A B OP1 O2' G G 7 22 2.12 6 D D O N LYS SER 41 43 2.13 6 B D N7 O G GLN 17 38 2.15 6 A C N7 O G GLN 5 26 2.15 6 B D O6 NE1 G TRP 23 39 2.15 6 B B O6 O6 G G 14 23 2.16 6 B B O6 O6 G G 16 19 2.16 6 A C O6 NE1 G TRP 11 27 2.16 6 A A O6 O6 G G 2 11 2.16 6 A A O6 O6 G G 4 7 2.18 7 C C HZ2 HD21 LYS ASN 32 36 1.19 7 C C HB2 HE1 GLN TRP 26 27 1.22 7 D D HB2 HE1 GLN TRP 38 39 1.24 7 B B HO5' OP1 G G 13 14 1.26 7 A A H21 HO2' G A 4 6 1.30 7 B B O2' H8 A G 18 19 1.34 7 A B N7 HO3' A A 6 24 1.41 7 A A H22 O2' G G 5 7 1.43 7 A B O3' H62 A A 12 18 1.44 7 A A H1 N7 G G 8 11 1.45 7 B B N3 H1' G A 23 24 1.46 7 A A N3 H1' G A 11 12 1.47 7 B B H1 N7 G G 20 23 1.47 7 A B N3 HO2' G A 10 18 1.48 7 B B O4' H61 G A 13 15 1.48 7 A A N3 H62 G A 7 9 1.49 7 A B H1' O4' G G 4 13 1.49 7 B B H22 N7 G A 13 15 1.50 7 A A O2' H8 A G 6 7 1.51 7 A A H22 N7 G A 1 3 1.51 7 A B O4' H1' G G 1 16 1.52 7 A B H62 O3' A A 6 24 1.54 7 A A N7 H21 G G 2 11 1.58 7 B B N7 H21 G G 14 23 1.59 7 B B N3 H62 G A 19 21 1.59 7 A A O6 O6 G G 8 11 2.00 7 B B O6 O6 G G 20 23 2.00 7 D D O N LYS SER 41 43 2.09 7 C C O N LYS SER 29 31 2.11 7 B B O6 O6 G G 16 19 2.14 7 A C N7 O G GLN 5 26 2.15 7 A B N3 O2' G A 10 18 2.15 7 B D N7 O G GLN 17 38 2.16 7 B D O6 NE1 G TRP 23 39 2.16 7 A A O6 O6 G G 2 11 2.17 7 A C O6 NE1 G TRP 11 27 2.17 7 B B O6 O6 G G 14 23 2.17 7 A A O6 O6 G G 4 7 2.18 8 C C HD22 HZ2 ASN LYS 28 32 1.18 8 D D HZ1 H LYS THR 46 47 1.19 8 D D HB2 HE1 GLN TRP 38 39 1.22 8 C C HB2 HE1 GLN TRP 26 27 1.23 8 B B HO2' OP1 A G 21 22 1.23 8 B B H21 HO2' G A 16 18 1.27 8 A A HO5' OP1 G G 1 2 1.29 8 B B H22 O2' G G 17 19 1.41 8 A A H1 N7 G G 8 11 1.43 8 B B H1 N7 G G 20 23 1.44 8 A B O3' H62 A A 12 18 1.44 8 A B H62 O3' A A 6 24 1.44 8 B B O2' H8 A G 18 19 1.45 8 A A H22 O2' G G 5 7 1.46 8 B B N3 H1' G A 23 24 1.47 8 A A N3 H1' G A 11 12 1.47 8 B B H22 N7 G A 13 15 1.49 8 A B HO2' N3 A G 6 22 1.50 8 B B N3 H62 G A 19 21 1.50 8 A A N3 H62 G A 7 9 1.50 8 A A O2' H8 A G 6 7 1.52 8 A B O4' H1' G G 1 16 1.53 8 A B H1' O4' G G 4 13 1.54 8 A A H22 N7 G A 1 3 1.55 8 A A N7 H21 G G 2 11 1.59 8 A A H22 N7 G A 7 9 1.59 8 A B O5' HO2' G G 7 22 1.60 8 B B O6 O6 G G 20 23 1.99 8 A A O6 O6 G G 8 11 1.99 8 C C O N LYS SER 29 31 2.11 8 D D O N LYS SER 41 43 2.13 8 B D O6 NE1 G TRP 23 39 2.15 8 B D N7 O G GLN 17 38 2.15 8 B B O6 O6 G G 14 23 2.15 8 B B O6 O6 G G 16 19 2.16 8 A A O6 O6 G G 4 7 2.17 8 A C N7 O G GLN 5 26 2.17 8 A C O6 NE1 G TRP 11 27 2.18 8 A B N3 O2' G A 10 18 2.18 8 A A O6 O6 G G 2 11 2.19 9 C C HB2 HE1 GLN TRP 26 27 1.24 9 D D HB2 HE1 GLN TRP 38 39 1.25 9 B B HO5' OP1 G G 13 14 1.27 9 B B H22 O2' G G 17 19 1.38 9 A A H22 O2' G G 5 7 1.40 9 A A H1 N7 G G 8 11 1.42 9 B B H1 N7 G G 20 23 1.44 9 A B H62 O3' A A 6 24 1.45 9 B B N3 H1' G A 23 24 1.48 9 A A N3 H1' G A 11 12 1.48 9 A A N3 H62 G A 7 9 1.48 9 A A HO2' OP1 A G 3 4 1.48 9 A A O2' H8 A G 6 7 1.49 9 A B O3' H62 A A 12 18 1.50 9 A B N3 HO2' G A 10 18 1.51 9 A B HO2' N3 A G 6 22 1.51 9 B B O2' H8 A G 18 19 1.52 9 A A H22 N7 G A 1 3 1.54 9 B B H4' OP1 G A 14 15 1.55 9 A A H4' OP1 G A 2 3 1.55 9 B B H22 N7 G A 13 15 1.55 9 A B H1' O4' G G 4 13 1.56 9 B B N3 H62 G A 19 21 1.56 9 A B O4' H1' G G 1 16 1.56 9 B B N7 H21 G G 14 23 1.58 9 A A N7 H21 G G 2 11 1.59 9 B B O6 O6 G G 20 23 1.99 9 A A O6 O6 G G 8 11 1.99 9 D D O N LYS SER 41 43 2.11 9 C C O N LYS SER 29 31 2.11 9 A C O6 NE1 G TRP 11 27 2.15 9 A A O6 O6 G G 4 7 2.16 9 B D O6 NE1 G TRP 23 39 2.17 9 B D N7 O G GLN 17 38 2.18 9 A C N7 O G GLN 5 26 2.18 9 A A O6 O6 G G 2 11 2.18 9 B B O6 O6 G G 14 23 2.18 10 C C HD22 HZ3 ASN LYS 28 32 1.17 10 C C HB2 HE1 GLN TRP 26 27 1.22 10 D D HB2 HE1 GLN TRP 38 39 1.23 10 B B HO5' OP1 G G 13 14 1.24 10 A A H1 N7 G G 8 11 1.42 10 B B H22 O2' G G 17 19 1.42 10 A B O3' H62 A A 12 18 1.44 10 B B H1 N7 G G 20 23 1.44 10 A A H22 O2' G G 5 7 1.45 10 B B N3 H1' G A 23 24 1.47 10 A A N3 H1' G A 11 12 1.48 10 A B H62 O3' A A 6 24 1.49 10 B B H22 N7 G A 13 15 1.49 10 B B O2' H8 A G 18 19 1.49 10 A B HO2' N3 A G 6 22 1.50 10 A B N3 HO2' G A 10 18 1.50 10 A A N3 H62 G A 7 9 1.51 10 A A O2' H8 A G 6 7 1.51 10 B B N3 H62 G A 19 21 1.52 10 A B O4' H1' G G 1 16 1.53 10 B B O4' H61 G A 13 15 1.54 10 A B H1' O4' G G 4 13 1.55 10 A A H4' OP1 G A 2 3 1.55 10 A A H1' OP2 G G 1 2 1.58 10 B B N7 H21 G G 14 23 1.59 10 B B H21 N7 G G 19 22 1.60 10 A A O6 O6 G G 8 11 1.99 10 B B O6 O6 G G 20 23 2.00 10 C C O N LYS SER 29 31 2.11 10 D D O N LYS SER 41 43 2.11 10 B D N7 O G GLN 17 38 2.15 10 B B O6 O6 G G 14 23 2.16 10 B D O6 NE1 G TRP 23 39 2.16 10 B B O6 O6 G G 16 19 2.17 10 A A O6 O6 G G 4 7 2.17 10 A C N7 O G GLN 5 26 2.18 10 A C O2' OD1 G ASN 8 36 2.18 10 A C O6 NE1 G TRP 11 27 2.18 10 A A O6 O6 G G 2 11 2.19 1 A G 7 0.085 SIDE CHAIN 1 A A 12 0.066 SIDE CHAIN 1 B G 19 0.089 SIDE CHAIN 1 B A 24 0.061 SIDE CHAIN 2 A G 7 0.089 SIDE CHAIN 2 A A 12 0.070 SIDE CHAIN 2 B G 19 0.083 SIDE CHAIN 2 B G 22 0.055 SIDE CHAIN 2 B A 24 0.067 SIDE CHAIN 3 A A 6 0.059 SIDE CHAIN 3 A G 7 0.082 SIDE CHAIN 3 A G 10 0.056 SIDE CHAIN 3 A A 12 0.065 SIDE CHAIN 3 B G 19 0.087 SIDE CHAIN 3 B G 22 0.048 SIDE CHAIN 3 B A 24 0.068 SIDE CHAIN 4 A A 6 0.049 SIDE CHAIN 4 A G 7 0.081 SIDE CHAIN 4 A G 10 0.048 SIDE CHAIN 4 A A 12 0.065 SIDE CHAIN 4 B G 19 0.098 SIDE CHAIN 4 B G 22 0.055 SIDE CHAIN 4 B A 24 0.058 SIDE CHAIN 5 A G 7 0.083 SIDE CHAIN 5 A G 10 0.053 SIDE CHAIN 5 A A 12 0.062 SIDE CHAIN 5 B A 18 0.054 SIDE CHAIN 5 B G 19 0.085 SIDE CHAIN 5 B G 22 0.052 SIDE CHAIN 5 B A 24 0.071 SIDE CHAIN 6 A A 6 0.054 SIDE CHAIN 6 A G 7 0.085 SIDE CHAIN 6 A G 10 0.053 SIDE CHAIN 6 A A 12 0.072 SIDE CHAIN 6 B G 19 0.078 SIDE CHAIN 6 B G 22 0.053 SIDE CHAIN 6 B A 24 0.064 SIDE CHAIN 7 A G 7 0.089 SIDE CHAIN 7 A A 12 0.063 SIDE CHAIN 7 B G 19 0.060 SIDE CHAIN 7 B G 22 0.053 SIDE CHAIN 7 B A 24 0.066 SIDE CHAIN 8 A G 7 0.091 SIDE CHAIN 8 A G 10 0.046 SIDE CHAIN 8 A A 12 0.064 SIDE CHAIN 8 B G 19 0.080 SIDE CHAIN 8 B G 22 0.050 SIDE CHAIN 8 B A 24 0.063 SIDE CHAIN 9 A G 7 0.083 SIDE CHAIN 9 A A 12 0.065 SIDE CHAIN 9 B G 19 0.093 SIDE CHAIN 9 B A 24 0.064 SIDE CHAIN 10 A G 7 0.091 SIDE CHAIN 10 A A 12 0.063 SIDE CHAIN 10 B G 19 0.087 SIDE CHAIN 10 B G 22 0.048 SIDE CHAIN 10 B A 24 0.067 SIDE CHAIN 1 2.41 0.40 105.40 107.81 A A A N9 C4 C5 G G G 1 1 1 N 1 -5.76 0.70 109.70 103.94 A A A C1' O4' C4' G G G 11 11 11 N 1 -5.57 0.70 109.70 104.13 B B B C1' O4' C4' G G G 23 23 23 N 1 -11.42 1.80 110.60 99.18 C C C N CA CB LYS LYS LYS 29 29 29 N 1 13.45 2.10 111.70 125.15 C C C CB CA C PRO PRO PRO 30 30 30 N 1 -8.36 1.20 103.30 94.94 C C C N CA CB PRO PRO PRO 30 30 30 N 1 -13.82 2.20 117.20 103.38 C C C CA C N PRO PRO SER 30 30 31 Y 1 -11.52 1.80 110.60 99.08 D D D N CA CB LYS LYS LYS 41 41 41 N 1 13.36 2.10 111.70 125.06 D D D CB CA C PRO PRO PRO 42 42 42 N 1 -8.55 1.20 103.30 94.75 D D D N CA CB PRO PRO PRO 42 42 42 N 1 -13.85 2.20 117.20 103.35 D D D CA C N PRO PRO SER 42 42 43 Y 2 -4.53 0.70 109.70 105.17 A A A C1' O4' C4' G G G 11 11 11 N 2 -5.72 0.70 109.70 103.98 B B B C1' O4' C4' G G G 23 23 23 N 2 -11.53 1.80 110.60 99.07 C C C N CA CB LYS LYS LYS 29 29 29 N 2 13.34 2.10 111.70 125.04 C C C CB CA C PRO PRO PRO 30 30 30 N 2 -8.55 1.20 103.30 94.75 C C C N CA CB PRO PRO PRO 30 30 30 N 2 -13.87 2.20 117.20 103.33 C C C CA C N PRO PRO SER 30 30 31 Y 2 -11.36 1.80 110.60 99.24 D D D N CA CB LYS LYS LYS 41 41 41 N 2 13.54 2.10 111.70 125.24 D D D CB CA C PRO PRO PRO 42 42 42 N 2 -8.29 1.20 103.30 95.01 D D D N CA CB PRO PRO PRO 42 42 42 N 2 -13.88 2.20 117.20 103.32 D D D CA C N PRO PRO SER 42 42 43 Y 3 -5.75 0.70 109.70 103.95 A A A C1' O4' C4' G G G 11 11 11 N 3 -5.63 0.70 109.70 104.07 B B B C1' O4' C4' G G G 23 23 23 N 3 -11.35 1.80 110.60 99.25 C C C N CA CB LYS LYS LYS 29 29 29 N 3 13.41 2.10 111.70 125.11 C C C CB CA C PRO PRO PRO 30 30 30 N 3 -8.38 1.20 103.30 94.92 C C C N CA CB PRO PRO PRO 30 30 30 N 3 -13.72 2.20 117.20 103.48 C C C CA C N PRO PRO SER 30 30 31 Y 3 -11.59 1.80 110.60 99.01 D D D N CA CB LYS LYS LYS 41 41 41 N 3 13.35 2.10 111.70 125.05 D D D CB CA C PRO PRO PRO 42 42 42 N 3 -8.56 1.20 103.30 94.74 D D D N CA CB PRO PRO PRO 42 42 42 N 3 -14.01 2.20 117.20 103.19 D D D CA C N PRO PRO SER 42 42 43 Y 4 -5.70 0.70 109.70 104.00 A A A C1' O4' C4' G G G 11 11 11 N 4 -5.66 0.70 109.70 104.04 B B B C1' O4' C4' G G G 23 23 23 N 4 -11.69 1.80 110.60 98.91 C C C N CA CB LYS LYS LYS 29 29 29 N 4 13.30 2.10 111.70 125.00 C C C CB CA C PRO PRO PRO 30 30 30 N 4 -8.14 1.20 103.30 95.16 C C C N CA CB PRO PRO PRO 30 30 30 N 4 -13.89 2.20 117.20 103.31 C C C CA C N PRO PRO SER 30 30 31 Y 4 -11.42 1.80 110.60 99.18 D D D N CA CB LYS LYS LYS 41 41 41 N 4 13.46 2.10 111.70 125.16 D D D CB CA C PRO PRO PRO 42 42 42 N 4 -8.56 1.20 103.30 94.74 D D D N CA CB PRO PRO PRO 42 42 42 N 4 -13.85 2.20 117.20 103.35 D D D CA C N PRO PRO SER 42 42 43 Y 5 2.42 0.40 105.40 107.82 A A A N9 C4 C5 G G G 1 1 1 N 5 -5.91 0.70 109.70 103.79 A A A C1' O4' C4' G G G 11 11 11 N 5 -4.57 0.70 109.70 105.13 B B B C1' O4' C4' G G G 23 23 23 N 5 -11.53 1.80 110.60 99.07 C C C N CA CB LYS LYS LYS 29 29 29 N 5 13.39 2.10 111.70 125.09 C C C CB CA C PRO PRO PRO 30 30 30 N 5 -8.63 1.20 103.30 94.67 C C C N CA CB PRO PRO PRO 30 30 30 N 5 -13.82 2.20 117.20 103.38 C C C CA C N PRO PRO SER 30 30 31 Y 5 -11.49 1.80 110.60 99.11 D D D N CA CB LYS LYS LYS 41 41 41 N 5 13.32 2.10 111.70 125.02 D D D CB CA C PRO PRO PRO 42 42 42 N 5 -8.47 1.20 103.30 94.83 D D D N CA CB PRO PRO PRO 42 42 42 N 5 -13.81 2.20 117.20 103.39 D D D CA C N PRO PRO SER 42 42 43 Y 6 -4.47 0.70 109.70 105.23 A A A C1' O4' C4' G G G 11 11 11 N 6 -5.92 0.70 109.70 103.78 B B B C1' O4' C4' G G G 23 23 23 N 6 -11.48 1.80 110.60 99.12 C C C N CA CB LYS LYS LYS 29 29 29 N 6 13.35 2.10 111.70 125.05 C C C CB CA C PRO PRO PRO 30 30 30 N 6 -8.51 1.20 103.30 94.79 C C C N CA CB PRO PRO PRO 30 30 30 N 6 -13.82 2.20 117.20 103.38 C C C CA C N PRO PRO SER 30 30 31 Y 6 -11.31 1.80 110.60 99.29 D D D N CA CB LYS LYS LYS 41 41 41 N 6 13.51 2.10 111.70 125.21 D D D CB CA C PRO PRO PRO 42 42 42 N 6 -8.25 1.20 103.30 95.05 D D D N CA CB PRO PRO PRO 42 42 42 N 6 -13.88 2.20 117.20 103.32 D D D CA C N PRO PRO SER 42 42 43 Y 7 -5.44 0.70 109.70 104.26 A A A C1' O4' C4' G G G 11 11 11 N 7 -5.63 0.70 109.70 104.07 B B B C1' O4' C4' G G G 23 23 23 N 7 -11.41 1.80 110.60 99.19 C C C N CA CB LYS LYS LYS 29 29 29 N 7 13.39 2.10 111.70 125.09 C C C CB CA C PRO PRO PRO 30 30 30 N 7 -8.54 1.20 103.30 94.76 C C C N CA CB PRO PRO PRO 30 30 30 N 7 -13.84 2.20 117.20 103.36 C C C CA C N PRO PRO SER 30 30 31 Y 7 -11.53 1.80 110.60 99.07 D D D N CA CB LYS LYS LYS 41 41 41 N 7 13.05 2.10 111.70 124.75 D D D CB CA C PRO PRO PRO 42 42 42 N 7 -8.01 1.20 103.30 95.29 D D D N CA CB PRO PRO PRO 42 42 42 N 7 -13.76 2.20 117.20 103.44 D D D CA C N PRO PRO SER 42 42 43 Y 8 -5.42 0.70 109.70 104.28 A A A C1' O4' C4' G G G 11 11 11 N 8 -5.90 0.70 109.70 103.80 B B B C1' O4' C4' G G G 23 23 23 N 8 -11.14 1.80 110.60 99.46 C C C N CA CB LYS LYS LYS 29 29 29 N 8 13.13 2.10 111.70 124.83 C C C CB CA C PRO PRO PRO 30 30 30 N 8 -8.34 1.20 103.30 94.96 C C C N CA CB PRO PRO PRO 30 30 30 N 8 -13.78 2.20 117.20 103.42 C C C CA C N PRO PRO SER 30 30 31 Y 8 -11.34 1.80 110.60 99.26 D D D N CA CB LYS LYS LYS 41 41 41 N 8 13.51 2.10 111.70 125.21 D D D CB CA C PRO PRO PRO 42 42 42 N 8 -8.28 1.20 103.30 95.02 D D D N CA CB PRO PRO PRO 42 42 42 N 8 -13.85 2.20 117.20 103.35 D D D CA C N PRO PRO SER 42 42 43 Y 9 2.52 0.40 105.40 107.92 A A A N9 C4 C5 G G G 1 1 1 N 9 -5.82 0.70 109.70 103.88 A A A C1' O4' C4' G G G 11 11 11 N 9 2.44 0.40 105.40 107.84 B B B N9 C4 C5 G G G 13 13 13 N 9 -5.61 0.70 109.70 104.09 B B B C1' O4' C4' G G G 23 23 23 N 9 -11.58 1.80 110.60 99.02 C C C N CA CB LYS LYS LYS 29 29 29 N 9 13.22 2.10 111.70 124.92 C C C CB CA C PRO PRO PRO 30 30 30 N 9 -8.21 1.20 103.30 95.09 C C C N CA CB PRO PRO PRO 30 30 30 N 9 -13.95 2.20 117.20 103.25 C C C CA C N PRO PRO SER 30 30 31 Y 9 -11.29 1.80 110.60 99.31 D D D N CA CB LYS LYS LYS 41 41 41 N 9 13.43 2.10 111.70 125.13 D D D CB CA C PRO PRO PRO 42 42 42 N 9 -8.54 1.20 103.30 94.76 D D D N CA CB PRO PRO PRO 42 42 42 N 9 -13.78 2.20 117.20 103.42 D D D CA C N PRO PRO SER 42 42 43 Y 10 -5.55 0.70 109.70 104.15 A A A C1' O4' C4' G G G 11 11 11 N 10 -5.54 0.70 109.70 104.16 B B B C1' O4' C4' G G G 23 23 23 N 10 -11.26 1.80 110.60 99.34 C C C N CA CB LYS LYS LYS 29 29 29 N 10 13.31 2.10 111.70 125.01 C C C CB CA C PRO PRO PRO 30 30 30 N 10 -8.42 1.20 103.30 94.88 C C C N CA CB PRO PRO PRO 30 30 30 N 10 -13.84 2.20 117.20 103.36 C C C CA C N PRO PRO SER 30 30 31 Y 10 -11.64 1.80 110.60 98.96 D D D N CA CB LYS LYS LYS 41 41 41 N 10 13.27 2.10 111.70 124.97 D D D CB CA C PRO PRO PRO 42 42 42 N 10 -8.13 1.20 103.30 95.17 D D D N CA CB PRO PRO PRO 42 42 42 N 10 -13.93 2.20 117.20 103.27 D D D CA C N PRO PRO SER 42 42 43 Y 1 A A N9 C4 G G 5 5 -0.081 0.008 1.375 1.294 N 1 A A C6 N1 G G 8 8 -0.059 0.007 1.391 1.332 N 1 A A C5 N7 G G 8 8 -0.037 0.006 1.388 1.351 N 1 A A N7 C8 G G 8 8 -0.038 0.006 1.305 1.267 N 1 A A C8 N9 A A 12 12 -0.049 0.008 1.373 1.324 N 1 A A N9 C4 A A 12 12 -0.040 0.006 1.374 1.334 N 1 B B N9 C4 G G 17 17 -0.082 0.008 1.375 1.293 N 1 B B C6 N1 G G 20 20 -0.059 0.007 1.391 1.332 N 1 B B C5 N7 G G 20 20 -0.039 0.006 1.388 1.349 N 1 B B N7 C8 G G 20 20 -0.039 0.006 1.305 1.266 N 1 B B C8 N9 A A 24 24 -0.049 0.008 1.373 1.324 N 1 B B N9 C4 A A 24 24 -0.040 0.006 1.374 1.334 N 1 C C CG CD1 TRP TRP 27 27 -0.092 0.014 1.363 1.271 N 1 C C NE1 CE2 TRP TRP 27 27 -0.112 0.013 1.371 1.259 N 1 C C CD2 CE3 TRP TRP 27 27 -0.125 0.015 1.399 1.274 N 1 D D CG CD1 TRP TRP 39 39 -0.093 0.014 1.363 1.270 N 1 D D NE1 CE2 TRP TRP 39 39 -0.115 0.013 1.371 1.256 N 1 D D CD2 CE3 TRP TRP 39 39 -0.124 0.015 1.399 1.275 N 2 A A N9 C4 G G 5 5 -0.082 0.008 1.375 1.293 N 2 A A C6 N1 G G 8 8 -0.060 0.007 1.391 1.331 N 2 A A C5 N7 G G 8 8 -0.039 0.006 1.388 1.349 N 2 A A N7 C8 G G 8 8 -0.039 0.006 1.305 1.266 N 2 A A N9 C4 A A 12 12 -0.043 0.006 1.374 1.331 N 2 B B N9 C4 G G 17 17 -0.080 0.008 1.375 1.295 N 2 B B C6 N1 G G 20 20 -0.059 0.007 1.391 1.332 N 2 B B C5 N7 G G 20 20 -0.037 0.006 1.388 1.351 N 2 B B N7 C8 G G 20 20 -0.037 0.006 1.305 1.268 N 2 B B C8 N9 A A 24 24 -0.048 0.008 1.373 1.325 N 2 B B N9 C4 A A 24 24 -0.041 0.006 1.374 1.333 N 2 C C CG CD1 TRP TRP 27 27 -0.091 0.014 1.363 1.272 N 2 C C NE1 CE2 TRP TRP 27 27 -0.118 0.013 1.371 1.253 N 2 C C CD2 CE3 TRP TRP 27 27 -0.124 0.015 1.399 1.275 N 2 D D CG CD1 TRP TRP 39 39 -0.091 0.014 1.363 1.272 N 2 D D NE1 CE2 TRP TRP 39 39 -0.113 0.013 1.371 1.258 N 2 D D CD2 CE3 TRP TRP 39 39 -0.125 0.015 1.399 1.274 N 3 A A N9 C4 G G 5 5 -0.077 0.008 1.375 1.298 N 3 A A C6 N1 G G 8 8 -0.059 0.007 1.391 1.332 N 3 A A C5 N7 G G 8 8 -0.038 0.006 1.388 1.350 N 3 A A N7 C8 G G 8 8 -0.038 0.006 1.305 1.267 N 3 A A C8 N9 A A 12 12 -0.050 0.008 1.373 1.323 N 3 A A N9 C4 A A 12 12 -0.041 0.006 1.374 1.333 N 3 B B N9 C4 G G 17 17 -0.080 0.008 1.375 1.295 N 3 B B C6 N1 G G 20 20 -0.059 0.007 1.391 1.332 N 3 B B C5 N7 G G 20 20 -0.040 0.006 1.388 1.348 N 3 B B N7 C8 G G 20 20 -0.039 0.006 1.305 1.266 N 3 B B C8 N9 A A 24 24 -0.048 0.008 1.373 1.325 N 3 B B N9 C4 A A 24 24 -0.041 0.006 1.374 1.333 N 3 C C CG CD1 TRP TRP 27 27 -0.091 0.014 1.363 1.272 N 3 C C NE1 CE2 TRP TRP 27 27 -0.114 0.013 1.371 1.257 N 3 C C CD2 CE3 TRP TRP 27 27 -0.124 0.015 1.399 1.275 N 3 D D CG CD1 TRP TRP 39 39 -0.093 0.014 1.363 1.270 N 3 D D NE1 CE2 TRP TRP 39 39 -0.112 0.013 1.371 1.259 N 3 D D CD2 CE3 TRP TRP 39 39 -0.123 0.015 1.399 1.276 N 4 A A N9 C4 G G 5 5 -0.076 0.008 1.375 1.299 N 4 A A C6 N1 G G 8 8 -0.061 0.007 1.391 1.330 N 4 A A C5 N7 G G 8 8 -0.039 0.006 1.388 1.349 N 4 A A N7 C8 G G 8 8 -0.039 0.006 1.305 1.266 N 4 A A C8 N9 A A 12 12 -0.049 0.008 1.373 1.324 N 4 A A N9 C4 A A 12 12 -0.040 0.006 1.374 1.334 N 4 B B N9 C4 G G 17 17 -0.085 0.008 1.375 1.290 N 4 B B C6 N1 G G 20 20 -0.060 0.007 1.391 1.331 N 4 B B C5 N7 G G 20 20 -0.041 0.006 1.388 1.347 N 4 B B N7 C8 G G 20 20 -0.039 0.006 1.305 1.266 N 4 B B C8 N9 A A 24 24 -0.048 0.008 1.373 1.325 N 4 B B N9 C4 A A 24 24 -0.042 0.006 1.374 1.332 N 4 C C CG CD1 TRP TRP 27 27 -0.092 0.014 1.363 1.271 N 4 C C NE1 CE2 TRP TRP 27 27 -0.115 0.013 1.371 1.256 N 4 C C CD2 CE3 TRP TRP 27 27 -0.125 0.015 1.399 1.274 N 4 D D CG CD1 TRP TRP 39 39 -0.092 0.014 1.363 1.271 N 4 D D NE1 CE2 TRP TRP 39 39 -0.114 0.013 1.371 1.257 N 4 D D CD2 CE3 TRP TRP 39 39 -0.124 0.015 1.399 1.275 N 5 A A N9 C4 G G 5 5 -0.081 0.008 1.375 1.294 N 5 A A C6 N1 G G 8 8 -0.060 0.007 1.391 1.331 N 5 A A C5 N7 G G 8 8 -0.037 0.006 1.388 1.351 N 5 A A N7 C8 G G 8 8 -0.038 0.006 1.305 1.267 N 5 A A N9 C4 A A 12 12 -0.040 0.006 1.374 1.334 N 5 B B N9 C4 G G 17 17 -0.081 0.008 1.375 1.294 N 5 B B C6 N1 G G 20 20 -0.059 0.007 1.391 1.332 N 5 B B C5 N7 G G 20 20 -0.039 0.006 1.388 1.349 N 5 B B N7 C8 G G 20 20 -0.039 0.006 1.305 1.266 N 5 B B N9 C4 A A 24 24 -0.044 0.006 1.374 1.330 N 5 C C CG CD1 TRP TRP 27 27 -0.091 0.014 1.363 1.272 N 5 C C NE1 CE2 TRP TRP 27 27 -0.113 0.013 1.371 1.258 N 5 C C CD2 CE3 TRP TRP 27 27 -0.123 0.015 1.399 1.276 N 5 D D CG CD1 TRP TRP 39 39 -0.092 0.014 1.363 1.271 N 5 D D NE1 CE2 TRP TRP 39 39 -0.117 0.013 1.371 1.254 N 5 D D CD2 CE3 TRP TRP 39 39 -0.124 0.015 1.399 1.275 N 6 A A N9 C4 G G 5 5 -0.082 0.008 1.375 1.293 N 6 A A C6 N1 G G 8 8 -0.058 0.007 1.391 1.333 N 6 A A C5 N7 G G 8 8 -0.039 0.006 1.388 1.349 N 6 A A N7 C8 G G 8 8 -0.039 0.006 1.305 1.266 N 6 A A N3 C4 A A 12 12 -0.037 0.006 1.344 1.307 N 6 A A N9 C4 A A 12 12 -0.044 0.006 1.374 1.330 N 6 B B N9 C4 G G 17 17 -0.079 0.008 1.375 1.296 N 6 B B C6 N1 G G 20 20 -0.060 0.007 1.391 1.331 N 6 B B C5 N7 G G 20 20 -0.037 0.006 1.388 1.351 N 6 B B N7 C8 G G 20 20 -0.038 0.006 1.305 1.267 N 6 B B C8 N9 A A 24 24 -0.049 0.008 1.373 1.324 N 6 B B N9 C4 A A 24 24 -0.040 0.006 1.374 1.334 N 6 C C CG CD1 TRP TRP 27 27 -0.092 0.014 1.363 1.271 N 6 C C NE1 CE2 TRP TRP 27 27 -0.117 0.013 1.371 1.254 N 6 C C CD2 CE3 TRP TRP 27 27 -0.123 0.015 1.399 1.276 N 6 D D CG CD1 TRP TRP 39 39 -0.091 0.014 1.363 1.272 N 6 D D NE1 CE2 TRP TRP 39 39 -0.114 0.013 1.371 1.257 N 6 D D CD2 CE3 TRP TRP 39 39 -0.125 0.015 1.399 1.274 N 7 A A N9 C4 G G 5 5 -0.078 0.008 1.375 1.297 N 7 A A C6 N1 G G 8 8 -0.059 0.007 1.391 1.332 N 7 A A C5 N7 G G 8 8 -0.040 0.006 1.388 1.348 N 7 A A N7 C8 G G 8 8 -0.039 0.006 1.305 1.266 N 7 A A C8 N9 A A 12 12 -0.050 0.008 1.373 1.323 N 7 A A N9 C4 A A 12 12 -0.040 0.006 1.374 1.334 N 7 B B N9 C4 G G 17 17 -0.079 0.008 1.375 1.296 N 7 B B C6 N1 G G 20 20 -0.058 0.007 1.391 1.333 N 7 B B C5 N7 G G 20 20 -0.038 0.006 1.388 1.350 N 7 B B N7 C8 G G 20 20 -0.037 0.006 1.305 1.268 N 7 B B C8 N9 A A 24 24 -0.052 0.008 1.373 1.321 N 7 B B N9 C4 A A 24 24 -0.042 0.006 1.374 1.332 N 7 C C CG CD1 TRP TRP 27 27 -0.092 0.014 1.363 1.271 N 7 C C NE1 CE2 TRP TRP 27 27 -0.114 0.013 1.371 1.257 N 7 C C CD2 CE3 TRP TRP 27 27 -0.123 0.015 1.399 1.276 N 7 D D CG CD1 TRP TRP 39 39 -0.092 0.014 1.363 1.271 N 7 D D NE1 CE2 TRP TRP 39 39 -0.113 0.013 1.371 1.258 N 7 D D CD2 CE3 TRP TRP 39 39 -0.126 0.015 1.399 1.273 N 8 A A N9 C4 G G 1 1 -0.049 0.008 1.375 1.326 N 8 A A N9 C4 G G 5 5 -0.082 0.008 1.375 1.293 N 8 A A C6 N1 G G 8 8 -0.060 0.007 1.391 1.331 N 8 A A C5 N7 G G 8 8 -0.039 0.006 1.388 1.349 N 8 A A N7 C8 G G 8 8 -0.038 0.006 1.305 1.267 N 8 A A C8 N9 A A 12 12 -0.049 0.008 1.373 1.324 N 8 A A N9 C4 A A 12 12 -0.041 0.006 1.374 1.333 N 8 B B N9 C4 G G 17 17 -0.081 0.008 1.375 1.294 N 8 B B C6 N1 G G 20 20 -0.059 0.007 1.391 1.332 N 8 B B C5 N7 G G 20 20 -0.038 0.006 1.388 1.350 N 8 B B N7 C8 G G 20 20 -0.038 0.006 1.305 1.267 N 8 B B C8 N9 A A 24 24 -0.050 0.008 1.373 1.323 N 8 B B N9 C4 A A 24 24 -0.040 0.006 1.374 1.334 N 8 C C CG CD1 TRP TRP 27 27 -0.092 0.014 1.363 1.271 N 8 C C NE1 CE2 TRP TRP 27 27 -0.114 0.013 1.371 1.257 N 8 C C CD2 CE3 TRP TRP 27 27 -0.123 0.015 1.399 1.276 N 8 D D CG CD1 TRP TRP 39 39 -0.092 0.014 1.363 1.271 N 8 D D NE1 CE2 TRP TRP 39 39 -0.113 0.013 1.371 1.258 N 8 D D CD2 CE3 TRP TRP 39 39 -0.123 0.015 1.399 1.276 N 9 A A N9 C4 G G 1 1 -0.050 0.008 1.375 1.325 N 9 A A N9 C4 G G 5 5 -0.081 0.008 1.375 1.294 N 9 A A C6 N1 G G 8 8 -0.060 0.007 1.391 1.331 N 9 A A C5 N7 G G 8 8 -0.039 0.006 1.388 1.349 N 9 A A N7 C8 G G 8 8 -0.039 0.006 1.305 1.266 N 9 A A C8 N9 A A 12 12 -0.050 0.008 1.373 1.323 N 9 A A N9 C4 A A 12 12 -0.040 0.006 1.374 1.334 N 9 B B N9 C4 G G 13 13 -0.049 0.008 1.375 1.326 N 9 B B N9 C4 G G 17 17 -0.082 0.008 1.375 1.293 N 9 B B C6 N1 G G 20 20 -0.060 0.007 1.391 1.331 N 9 B B C5 N7 G G 20 20 -0.039 0.006 1.388 1.349 N 9 B B N7 C8 G G 20 20 -0.038 0.006 1.305 1.267 N 9 B B C8 N9 A A 24 24 -0.051 0.008 1.373 1.322 N 9 B B N9 C4 A A 24 24 -0.039 0.006 1.374 1.335 N 9 C C CG CD1 TRP TRP 27 27 -0.092 0.014 1.363 1.271 N 9 C C NE1 CE2 TRP TRP 27 27 -0.112 0.013 1.371 1.259 N 9 C C CD2 CE3 TRP TRP 27 27 -0.123 0.015 1.399 1.276 N 9 D D CG CD1 TRP TRP 39 39 -0.092 0.014 1.363 1.271 N 9 D D NE1 CE2 TRP TRP 39 39 -0.112 0.013 1.371 1.259 N 9 D D CD2 CE3 TRP TRP 39 39 -0.123 0.015 1.399 1.276 N 10 A A N9 C4 G G 5 5 -0.083 0.008 1.375 1.292 N 10 A A C6 N1 G G 8 8 -0.060 0.007 1.391 1.331 N 10 A A C5 N7 G G 8 8 -0.041 0.006 1.388 1.347 N 10 A A N7 C8 G G 8 8 -0.040 0.006 1.305 1.265 N 10 A A C8 N9 A A 12 12 -0.050 0.008 1.373 1.323 N 10 A A N9 C4 A A 12 12 -0.041 0.006 1.374 1.333 N 10 B B N9 C4 G G 17 17 -0.081 0.008 1.375 1.294 N 10 B B C6 N1 G G 20 20 -0.061 0.007 1.391 1.330 N 10 B B C5 N7 G G 20 20 -0.039 0.006 1.388 1.349 N 10 B B N7 C8 G G 20 20 -0.039 0.006 1.305 1.266 N 10 B B C8 N9 A A 24 24 -0.051 0.008 1.373 1.322 N 10 B B N9 C4 A A 24 24 -0.040 0.006 1.374 1.334 N 10 C C CG CD1 TRP TRP 27 27 -0.091 0.014 1.363 1.272 N 10 C C NE1 CE2 TRP TRP 27 27 -0.114 0.013 1.371 1.257 N 10 C C CD2 CE3 TRP TRP 27 27 -0.122 0.015 1.399 1.277 N 10 D D CG CD1 TRP TRP 39 39 -0.093 0.014 1.363 1.270 N 10 D D NE1 CE2 TRP TRP 39 39 -0.113 0.013 1.371 1.258 N 10 D D CD2 CE3 TRP TRP 39 39 -0.125 0.015 1.399 1.274 N 1 C TRP 27 -139.55 -51.79 1 C ASN 28 -144.50 33.29 1 C PRO 30 15.28 44.09 1 C LYS 32 -47.12 94.17 1 C THR 35 78.87 32.75 1 D TRP 39 -140.76 -51.29 1 D ASN 40 -145.14 33.49 1 D PRO 42 15.30 44.58 1 D LYS 44 -47.06 91.23 2 C TRP 27 -141.36 -50.96 2 C ASN 28 -145.40 33.22 2 C PRO 30 15.26 44.62 2 C LYS 32 -47.17 91.26 2 D TRP 39 -139.99 -51.54 2 D ASN 40 -144.30 32.95 2 D PRO 42 15.61 44.57 2 D LYS 44 -47.27 95.59 3 C TRP 27 -140.65 -51.46 3 C ASN 28 -144.54 32.99 3 C PRO 30 15.42 44.53 3 C LYS 32 -47.24 95.53 3 D TRP 39 -138.05 -51.68 3 D ASN 40 -144.38 33.12 3 D PRO 42 15.21 44.66 3 D LYS 44 -47.08 90.81 4 C TRP 27 -140.51 -51.17 4 C ASN 28 -145.03 32.84 4 C PRO 30 15.00 44.41 4 C LYS 32 -47.25 92.53 4 C THR 35 48.75 25.35 4 D TRP 39 -140.06 -51.51 4 D ASN 40 -144.55 33.46 4 D PRO 42 15.39 44.61 4 D LYS 44 -47.08 91.21 5 C TRP 27 -139.63 -51.81 5 C ASN 28 -144.50 33.46 5 C PRO 30 15.32 45.30 5 C LYS 32 -47.19 93.06 5 D TRP 39 -141.05 -51.07 5 D ASN 40 -145.30 33.15 5 D PRO 42 15.23 44.58 5 D LYS 44 -47.19 91.09 6 C TRP 27 -141.06 -51.28 6 C ASN 28 -145.06 33.23 6 C PRO 30 15.31 44.71 6 C LYS 32 -47.05 91.10 6 D TRP 39 -140.08 -51.53 6 D ASN 40 -144.12 32.93 6 D PRO 42 15.53 44.81 6 D LYS 44 -47.28 95.34 7 C TRP 27 -140.45 -51.43 7 C ASN 28 -144.82 33.35 7 C PRO 30 15.29 44.44 7 C LYS 32 -47.03 91.22 7 D TRP 39 -139.35 -51.10 7 D ASN 40 -145.04 33.12 7 D PRO 42 14.74 43.78 7 D LYS 44 -47.20 91.73 8 C TRP 27 -138.69 -51.89 8 C ASN 28 -144.57 34.05 8 C PRO 30 15.05 44.64 8 C LYS 32 -46.89 91.55 8 C THR 35 70.49 34.76 8 D TRP 39 -140.39 -51.27 8 D ASN 40 -144.56 32.98 8 D PRO 42 15.44 44.86 8 D LYS 44 -47.42 95.41 9 C TRP 27 -138.31 -51.60 9 C ASN 28 -144.57 32.82 9 C PRO 30 14.94 44.54 9 C LYS 32 -47.13 91.33 9 D TRP 39 -139.19 -52.23 9 D ASN 40 -144.58 33.71 9 D PRO 42 15.43 44.23 9 D LYS 44 -47.07 91.79 9 D THR 47 75.50 54.99 10 C TRP 27 -138.54 -51.96 10 C ASN 28 -144.48 34.09 10 C PRO 30 15.29 44.47 10 C LYS 32 -46.91 91.80 10 C THR 35 71.07 36.02 10 D TRP 39 -140.18 -51.08 10 D ASN 40 -144.81 32.63 10 D PRO 42 15.08 44.34 10 D LYS 44 -47.27 92.23 10 D THR 47 48.07 25.73 N lowest energy, model 1 RNA aptamer against prion protein in complex with the partial binding peptide 1 N N 1 N N 2 N N 2 N N hydrog TYPE_11_PAIR A G 1 A N2 G 1 1_555 A A 3 A N7 A 3 1_555 hydrog TYPE_11_PAIR A G 1 A N3 G 1 1_555 A A 3 A N6 A 3 1_555 hydrog TYPE_6_PAIR A G 1 A N1 G 1 1_555 A G 4 A O6 G 4 1_555 hydrog TYPE_6_PAIR A G 1 A N2 G 1 1_555 A G 4 A N7 G 4 1_555 hydrog TYPE_6_PAIR A G 1 A N7 G 1 1_555 A G 10 A N2 G 10 1_555 hydrog TYPE_6_PAIR A G 1 A O6 G 1 1_555 A G 10 A N1 G 10 1_555 hydrog G-G MISPAIR A G 2 A N1 G 2 1_555 A G 4 A N7 G 4 1_555 hydrog TYPE_6_PAIR A G 2 A N1 G 2 1_555 A G 5 A O6 G 5 1_555 hydrog TYPE_6_PAIR A G 2 A N2 G 2 1_555 A G 5 A N7 G 5 1_555 hydrog TYPE_6_PAIR A G 2 A N7 G 2 1_555 A G 11 A N2 G 11 1_555 hydrog TYPE_6_PAIR A G 2 A O6 G 2 1_555 A G 11 A N1 G 11 1_555 hydrog A-G MISPAIR A A 3 A N7 A 3 1_555 B G 13 B N2 G 1 1_555 hydrog G-A MISPAIR A G 4 A N2 G 4 1_555 A A 6 A N3 A 6 1_555 hydrog TYPE_6_PAIR A G 4 A N1 G 4 1_555 A G 7 A O6 G 7 1_555 hydrog TYPE_6_PAIR A G 4 A N2 G 4 1_555 A G 7 A N7 G 7 1_555 hydrog TYPE_6_PAIR A G 5 A N1 G 5 1_555 A G 8 A O6 G 8 1_555 hydrog TYPE_6_PAIR A G 5 A N2 G 5 1_555 A G 8 A N7 G 8 1_555 hydrog TYPE_11_PAIR A G 7 A N2 G 7 1_555 A A 9 A N7 A 9 1_555 hydrog TYPE_11_PAIR A G 7 A N3 G 7 1_555 A A 9 A N6 A 9 1_555 hydrog TYPE_6_PAIR A G 7 A N1 G 7 1_555 A G 10 A O6 G 10 1_555 hydrog TYPE_6_PAIR A G 7 A N2 G 7 1_555 A G 10 A N7 G 10 1_555 hydrog TYPE_3_PAIR A G 7 A N1 G 7 1_555 B G 19 B O6 G 7 1_555 hydrog TYPE_3_PAIR A G 7 A O6 G 7 1_555 B G 19 B N1 G 7 1_555 hydrog TYPE_6_PAIR A G 8 A N1 G 8 1_555 A G 10 A O6 G 10 1_555 hydrog TYPE_6_PAIR A G 8 A N2 G 8 1_555 A G 10 A N7 G 10 1_555 hydrog TYPE_6_PAIR A G 8 A N1 G 8 1_555 A G 11 A O6 G 11 1_555 hydrog TYPE_6_PAIR A G 8 A N2 G 8 1_555 A G 11 A N7 G 11 1_555 hydrog TYPE_11_PAIR B G 13 B N2 G 1 1_555 B A 15 B N7 A 3 1_555 hydrog TYPE_11_PAIR B G 13 B N3 G 1 1_555 B A 15 B N6 A 3 1_555 hydrog TYPE_6_PAIR B G 13 B N1 G 1 1_555 B G 16 B O6 G 4 1_555 hydrog TYPE_6_PAIR B G 13 B N2 G 1 1_555 B G 16 B N7 G 4 1_555 hydrog TYPE_6_PAIR B G 13 B N7 G 1 1_555 B G 22 B N2 G 10 1_555 hydrog TYPE_6_PAIR B G 13 B O6 G 1 1_555 B G 22 B N1 G 10 1_555 hydrog G-G MISPAIR B G 14 B N1 G 2 1_555 B G 16 B N7 G 4 1_555 hydrog TYPE_6_PAIR B G 14 B N1 G 2 1_555 B G 17 B O6 G 5 1_555 hydrog TYPE_6_PAIR B G 14 B N2 G 2 1_555 B G 17 B N7 G 5 1_555 hydrog TYPE_6_PAIR B G 14 B N7 G 2 1_555 B G 23 B N2 G 11 1_555 hydrog TYPE_6_PAIR B G 14 B O6 G 2 1_555 B G 23 B N1 G 11 1_555 hydrog G-A MISPAIR B G 16 B N2 G 4 1_555 B A 18 B N3 A 6 1_555 hydrog TYPE_6_PAIR B G 16 B N1 G 4 1_555 B G 19 B O6 G 7 1_555 hydrog TYPE_6_PAIR B G 16 B N2 G 4 1_555 B G 19 B N7 G 7 1_555 hydrog TYPE_6_PAIR B G 17 B N1 G 5 1_555 B G 20 B O6 G 8 1_555 hydrog TYPE_6_PAIR B G 17 B N2 G 5 1_555 B G 20 B N7 G 8 1_555 hydrog TYPE_11_PAIR B G 19 B N2 G 7 1_555 B A 21 B N7 A 9 1_555 hydrog TYPE_11_PAIR B G 19 B N3 G 7 1_555 B A 21 B N6 A 9 1_555 hydrog TYPE_6_PAIR B G 19 B N1 G 7 1_555 B G 22 B O6 G 10 1_555 hydrog TYPE_6_PAIR B G 19 B N2 G 7 1_555 B G 22 B N7 G 10 1_555 hydrog TYPE_6_PAIR B G 20 B N1 G 8 1_555 B G 22 B O6 G 10 1_555 hydrog TYPE_6_PAIR B G 20 B N2 G 8 1_555 B G 22 B N7 G 10 1_555 hydrog TYPE_6_PAIR B G 20 B N1 G 8 1_555 B G 23 B O6 G 11 1_555 hydrog TYPE_6_PAIR B G 20 B N2 G 8 1_555 B G 23 B N7 G 11 1_555 Membrane Protein/RNA Aptamer, Prion, RNA, Alzheimer's disease, Membrane Protein-RNA complex 2RSK PDB 1 1 2RSK GGAGGAGGAGGA PRIO_BOVIN UNP 2 108 P10279 GQWNKPSKPKTN 1 12 2RSK 1 12 2RSK A 1 1 12 13 24 2RSK 13 24 2RSK B 1 1 12 108 119 2RSK 25 36 P10279 C 2 1 12 108 119 2RSK 37 48 P10279 D 2 1 12