0.019685
0.000000
0.000000
0.000000
0.037313
0.000000
0.000000
0.000000
0.012392
0.00000
0.00000
0.00000
CIS PROLINE - PRO 76
THE BINDING OF THE CUPRIC ION IS PROBLEMATIC. CLEARLY THE RESIDUES INDICATED DO PARTICIPATE IN THE BINDING. THIS PART OF THE STRUCTURE IS BEING IMPROVED. (CU 109)
Nikkola, M.
Gleason, F.K.
Fuchs, J.A.
Eklund, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
50.800
26.800
80.700
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cu 2
63.546
COPPER (II) ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
32
5093
5098
10.1021/bi00070a017
8098620
Crystal structure analysis of a mutant Escherichia coli thioredoxin in which lysine 36 is replaced by glutamic acid.
1993
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
212
167
The Refined Structure of Coli Thioredoxin
1990
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
11687.321
THIOREDOXIN
1
man
polymer
63.546
COPPER (II) ION
1
syn
non-polymer
18.015
water
80
nat
water
no
no
SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL
FKNGEVAATKVGALSKGQLKEFLDANLA
SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL
FKNGEVAATKVGALSKGQLKEFLDANLA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
sample
562
Escherichia coli
2.35
47.64
repository
Initial release
Version format compliance
Version format compliance
1
0
1993-10-31
1
1
2008-03-25
1
2
2011-07-13
Y
1993-01-10
REL
CU
COPPER (II) ION
HOH
water
CU
109
2
CU
CU
109
A
HOH
110
3
HOH
HOH
110
A
HOH
111
3
HOH
HOH
111
A
HOH
112
3
HOH
HOH
112
A
HOH
113
3
HOH
HOH
113
A
HOH
114
3
HOH
HOH
114
A
HOH
115
3
HOH
HOH
115
A
HOH
116
3
HOH
HOH
116
A
HOH
117
3
HOH
HOH
117
A
HOH
118
3
HOH
HOH
118
A
HOH
119
3
HOH
HOH
119
A
HOH
120
3
HOH
HOH
120
A
HOH
121
3
HOH
HOH
121
A
HOH
122
3
HOH
HOH
122
A
HOH
123
3
HOH
HOH
123
A
HOH
124
3
HOH
HOH
124
A
HOH
125
3
HOH
HOH
125
A
HOH
126
3
HOH
HOH
126
A
HOH
127
3
HOH
HOH
127
A
HOH
128
3
HOH
HOH
128
A
HOH
129
3
HOH
HOH
129
A
HOH
130
3
HOH
HOH
130
A
HOH
131
3
HOH
HOH
131
A
HOH
132
3
HOH
HOH
132
A
HOH
133
3
HOH
HOH
133
A
HOH
134
3
HOH
HOH
134
A
HOH
135
3
HOH
HOH
135
A
HOH
136
3
HOH
HOH
136
A
HOH
137
3
HOH
HOH
137
A
HOH
138
3
HOH
HOH
138
A
HOH
139
3
HOH
HOH
139
A
HOH
140
3
HOH
HOH
140
A
HOH
141
3
HOH
HOH
141
A
HOH
142
3
HOH
HOH
142
A
HOH
143
3
HOH
HOH
143
A
HOH
144
3
HOH
HOH
144
A
HOH
145
3
HOH
HOH
145
A
HOH
146
3
HOH
HOH
146
A
HOH
147
3
HOH
HOH
147
A
HOH
148
3
HOH
HOH
148
A
HOH
149
3
HOH
HOH
149
A
HOH
150
3
HOH
HOH
150
A
HOH
151
3
HOH
HOH
151
A
HOH
152
3
HOH
HOH
152
A
HOH
153
3
HOH
HOH
153
A
HOH
154
3
HOH
HOH
154
A
HOH
155
3
HOH
HOH
155
A
HOH
156
3
HOH
HOH
156
A
HOH
157
3
HOH
HOH
157
A
HOH
158
3
HOH
HOH
158
A
HOH
159
3
HOH
HOH
159
A
HOH
160
3
HOH
HOH
160
A
HOH
161
3
HOH
HOH
161
A
HOH
162
3
HOH
HOH
162
A
HOH
163
3
HOH
HOH
163
A
HOH
164
3
HOH
HOH
164
A
HOH
165
3
HOH
HOH
165
A
HOH
166
3
HOH
HOH
166
A
HOH
167
3
HOH
HOH
167
A
HOH
168
3
HOH
HOH
168
A
HOH
169
3
HOH
HOH
169
A
HOH
170
3
HOH
HOH
170
A
HOH
171
3
HOH
HOH
171
A
HOH
172
3
HOH
HOH
172
A
HOH
173
3
HOH
HOH
173
A
HOH
174
3
HOH
HOH
174
A
HOH
175
3
HOH
HOH
175
A
HOH
176
3
HOH
HOH
176
A
HOH
177
3
HOH
HOH
177
A
HOH
178
3
HOH
HOH
178
A
HOH
179
3
HOH
HOH
179
A
HOH
180
3
HOH
HOH
180
A
HOH
181
3
HOH
HOH
181
A
HOH
182
3
HOH
HOH
182
A
HOH
183
3
HOH
HOH
183
A
HOH
184
3
HOH
HOH
184
A
HOH
185
3
HOH
HOH
185
A
HOH
186
3
HOH
HOH
186
A
HOH
187
3
HOH
HOH
187
A
HOH
188
3
HOH
HOH
188
A
HOH
189
3
HOH
HOH
189
A
SER
1
n
1
SER
1
A
ASP
2
n
2
ASP
2
A
LYS
3
n
3
LYS
3
A
ILE
4
n
4
ILE
4
A
ILE
5
n
5
ILE
5
A
HIS
6
n
6
HIS
6
A
LEU
7
n
7
LEU
7
A
THR
8
n
8
THR
8
A
ASP
9
n
9
ASP
9
A
ASP
10
n
10
ASP
10
A
SER
11
n
11
SER
11
A
PHE
12
n
12
PHE
12
A
ASP
13
n
13
ASP
13
A
THR
14
n
14
THR
14
A
ASP
15
n
15
ASP
15
A
VAL
16
n
16
VAL
16
A
LEU
17
n
17
LEU
17
A
LYS
18
n
18
LYS
18
A
ALA
19
n
19
ALA
19
A
ASP
20
n
20
ASP
20
A
GLY
21
n
21
GLY
21
A
ALA
22
n
22
ALA
22
A
ILE
23
n
23
ILE
23
A
LEU
24
n
24
LEU
24
A
VAL
25
n
25
VAL
25
A
ASP
26
n
26
ASP
26
A
PHE
27
n
27
PHE
27
A
TRP
28
n
28
TRP
28
A
ALA
29
n
29
ALA
29
A
GLU
30
n
30
GLU
30
A
TRP
31
n
31
TRP
31
A
CYS
32
n
32
CYS
32
A
GLY
33
n
33
GLY
33
A
PRO
34
n
34
PRO
34
A
CYS
35
n
35
CYS
35
A
GLU
36
n
36
GLU
36
A
MET
37
n
37
MET
37
A
ILE
38
n
38
ILE
38
A
ALA
39
n
39
ALA
39
A
PRO
40
n
40
PRO
40
A
ILE
41
n
41
ILE
41
A
LEU
42
n
42
LEU
42
A
ASP
43
n
43
ASP
43
A
GLU
44
n
44
GLU
44
A
ILE
45
n
45
ILE
45
A
ALA
46
n
46
ALA
46
A
ASP
47
n
47
ASP
47
A
GLU
48
n
48
GLU
48
A
TYR
49
n
49
TYR
49
A
GLN
50
n
50
GLN
50
A
GLY
51
n
51
GLY
51
A
LYS
52
n
52
LYS
52
A
LEU
53
n
53
LEU
53
A
THR
54
n
54
THR
54
A
VAL
55
n
55
VAL
55
A
ALA
56
n
56
ALA
56
A
LYS
57
n
57
LYS
57
A
LEU
58
n
58
LEU
58
A
ASN
59
n
59
ASN
59
A
ILE
60
n
60
ILE
60
A
ASP
61
n
61
ASP
61
A
GLN
62
n
62
GLN
62
A
ASN
63
n
63
ASN
63
A
PRO
64
n
64
PRO
64
A
GLY
65
n
65
GLY
65
A
THR
66
n
66
THR
66
A
ALA
67
n
67
ALA
67
A
PRO
68
n
68
PRO
68
A
LYS
69
n
69
LYS
69
A
TYR
70
n
70
TYR
70
A
GLY
71
n
71
GLY
71
A
ILE
72
n
72
ILE
72
A
ARG
73
n
73
ARG
73
A
GLY
74
n
74
GLY
74
A
ILE
75
n
75
ILE
75
A
PRO
76
n
76
PRO
76
A
THR
77
n
77
THR
77
A
LEU
78
n
78
LEU
78
A
LEU
79
n
79
LEU
79
A
LEU
80
n
80
LEU
80
A
PHE
81
n
81
PHE
81
A
LYS
82
n
82
LYS
82
A
ASN
83
n
83
ASN
83
A
GLY
84
n
84
GLY
84
A
GLU
85
n
85
GLU
85
A
VAL
86
n
86
VAL
86
A
ALA
87
n
87
ALA
87
A
ALA
88
n
88
ALA
88
A
THR
89
n
89
THR
89
A
LYS
90
n
90
LYS
90
A
VAL
91
n
91
VAL
91
A
GLY
92
n
92
GLY
92
A
ALA
93
n
93
ALA
93
A
LEU
94
n
94
LEU
94
A
SER
95
n
95
SER
95
A
LYS
96
n
96
LYS
96
A
GLY
97
n
97
GLY
97
A
GLN
98
n
98
GLN
98
A
LEU
99
n
99
LEU
99
A
LYS
100
n
100
LYS
100
A
GLU
101
n
101
GLU
101
A
PHE
102
n
102
PHE
102
A
LEU
103
n
103
LEU
103
A
ASP
104
n
104
ASP
104
A
ALA
105
n
105
ALA
105
A
ASN
106
n
106
ASN
106
A
LEU
107
n
107
LEU
107
A
ALA
108
n
108
ALA
108
A
author_defined_assembly
1
monomeric
A
ASP
2
A
OD2
ASP
2
1_555
A
CU
109
B
CU
CU
1_555
A
ASP
10
A
OD1
ASP
10
4_575
86.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
-6.93
0.90
118.30
111.37
A
A
A
CB
CG
OD1
ASP
ASP
ASP
2
2
2
N
1
4.95
0.80
106.30
111.25
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
31
31
31
N
1
-4.90
0.80
107.30
102.40
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
31
31
31
N
1
A
ASP
2
-12.19
-37.97
1
A
ARG
73
-119.89
-82.95
0.199
0.199
2.0
1
2.0
80
903
1
0
822
0.017
2.95
model building
X-PLOR
refinement
X-PLOR
phasing
X-PLOR
THIOREDOXIN MUTANT WITH LYS 36 REPLACED BY GLU (K36E)
CRYSTAL STRUCTURE ANALYSIS OF A MUTANT ESCHERICHIA COLI THIOREDOXIN IN WHICH LYSINE 36 IS REPLACED BY GLUTAMIC ACID
1
N
N
2
N
N
3
N
N
A
SER
11
A
SER
11
HELX_P
A
LEU
17
A
LEU
17
1
A1
7
A
CYS
32
A
CYS
32
HELX_P
A
TYR
49
A
TYR
49
1
A2
18
A
ASN
59
A
ASN
59
HELX_P
A
ASN
63
A
ASN
63
1
A3
5
A
SER
95
A
SER
95
HELX_P
A
LEU
107
A
LEU
107
1
A4
13
disulf
2.040
A
CYS
32
A
SG
CYS
32
1_555
A
CYS
35
A
SG
CYS
35
1_555
metalc
2.270
A
CU
109
B
CU
CU
1_555
A
ASP
2
A
OD2
ASP
2
1_555
metalc
2.670
A
CU
109
B
CU
CU
1_555
A
ASP
10
A
OD1
ASP
10
4_575
ELECTRON TRANSPORT
ELECTRON TRANSPORT
A
ILE
75
A
ILE
75
1
A
PRO
76
A
PRO
76
3.18
THIO_ECOLI
UNP
1
1
P0AA25
SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL
FKNGEVAATKVGALSKGQLKEFLDANLA
1
108
2TIR
1
108
P0AA25
A
1
1
108
1
LYS
CONFLICT
GLU
36
2TIR
A
P0AA25
UNP
36
36
5
parallel
parallel
anti-parallel
anti-parallel
A
LYS
3
A
LYS
3
A
THR
8
A
THR
8
A
LEU
53
A
LEU
53
A
ASN
59
A
ASN
59
A
GLY
21
A
GLY
21
A
TRP
28
A
TRP
28
A
PRO
76
A
PRO
76
A
LYS
82
A
LYS
82
A
VAL
86
A
VAL
86
A
GLY
92
A
GLY
92
BINDING SITE FOR RESIDUE CU A 109
Software
3
A
SER
1
A
SER
1
3
1_555
A
ASP
2
A
ASP
2
3
1_555
A
ASP
10
A
ASP
10
3
4_575
19
P 21 21 21