0.019685 0.000000 0.000000 0.000000 0.037313 0.000000 0.000000 0.000000 0.012392 0.00000 0.00000 0.00000 CIS PROLINE - PRO 76 THE BINDING OF THE CUPRIC ION IS PROBLEMATIC. CLEARLY THE RESIDUES INDICATED DO PARTICIPATE IN THE BINDING. THIS PART OF THE STRUCTURE IS BEING IMPROVED. (CU 109) Nikkola, M. Gleason, F.K. Fuchs, J.A. Eklund, H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 50.800 26.800 80.700 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cu 2 63.546 COPPER (II) ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 32 5093 5098 10.1021/bi00070a017 8098620 Crystal structure analysis of a mutant Escherichia coli thioredoxin in which lysine 36 is replaced by glutamic acid. 1993 UK J.Mol.Biol. JMOBAK 0070 0022-2836 212 167 The Refined Structure of Coli Thioredoxin 1990 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 11687.321 THIOREDOXIN 1 man polymer 63.546 COPPER (II) ION 1 syn non-polymer 18.015 water 80 nat water no no SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL FKNGEVAATKVGALSKGQLKEFLDANLA SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL FKNGEVAATKVGALSKGQLKEFLDANLA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia sample 562 Escherichia coli 2.35 47.64 repository Initial release Version format compliance Version format compliance 1 0 1993-10-31 1 1 2008-03-25 1 2 2011-07-13 Y 1993-01-10 REL CU COPPER (II) ION HOH water CU 109 2 CU CU 109 A HOH 110 3 HOH HOH 110 A HOH 111 3 HOH HOH 111 A HOH 112 3 HOH HOH 112 A HOH 113 3 HOH HOH 113 A HOH 114 3 HOH HOH 114 A HOH 115 3 HOH HOH 115 A HOH 116 3 HOH HOH 116 A HOH 117 3 HOH HOH 117 A HOH 118 3 HOH HOH 118 A HOH 119 3 HOH HOH 119 A HOH 120 3 HOH HOH 120 A HOH 121 3 HOH HOH 121 A HOH 122 3 HOH HOH 122 A HOH 123 3 HOH HOH 123 A HOH 124 3 HOH HOH 124 A HOH 125 3 HOH HOH 125 A HOH 126 3 HOH HOH 126 A HOH 127 3 HOH HOH 127 A HOH 128 3 HOH HOH 128 A HOH 129 3 HOH HOH 129 A HOH 130 3 HOH HOH 130 A HOH 131 3 HOH HOH 131 A HOH 132 3 HOH HOH 132 A HOH 133 3 HOH HOH 133 A HOH 134 3 HOH HOH 134 A HOH 135 3 HOH HOH 135 A HOH 136 3 HOH HOH 136 A HOH 137 3 HOH HOH 137 A HOH 138 3 HOH HOH 138 A HOH 139 3 HOH HOH 139 A HOH 140 3 HOH HOH 140 A HOH 141 3 HOH HOH 141 A HOH 142 3 HOH HOH 142 A HOH 143 3 HOH HOH 143 A HOH 144 3 HOH HOH 144 A HOH 145 3 HOH HOH 145 A HOH 146 3 HOH HOH 146 A HOH 147 3 HOH HOH 147 A HOH 148 3 HOH HOH 148 A HOH 149 3 HOH HOH 149 A HOH 150 3 HOH HOH 150 A HOH 151 3 HOH HOH 151 A HOH 152 3 HOH HOH 152 A HOH 153 3 HOH HOH 153 A HOH 154 3 HOH HOH 154 A HOH 155 3 HOH HOH 155 A HOH 156 3 HOH HOH 156 A HOH 157 3 HOH HOH 157 A HOH 158 3 HOH HOH 158 A HOH 159 3 HOH HOH 159 A HOH 160 3 HOH HOH 160 A HOH 161 3 HOH HOH 161 A HOH 162 3 HOH HOH 162 A HOH 163 3 HOH HOH 163 A HOH 164 3 HOH HOH 164 A HOH 165 3 HOH HOH 165 A HOH 166 3 HOH HOH 166 A HOH 167 3 HOH HOH 167 A HOH 168 3 HOH HOH 168 A HOH 169 3 HOH HOH 169 A HOH 170 3 HOH HOH 170 A HOH 171 3 HOH HOH 171 A HOH 172 3 HOH HOH 172 A HOH 173 3 HOH HOH 173 A HOH 174 3 HOH HOH 174 A HOH 175 3 HOH HOH 175 A HOH 176 3 HOH HOH 176 A HOH 177 3 HOH HOH 177 A HOH 178 3 HOH HOH 178 A HOH 179 3 HOH HOH 179 A HOH 180 3 HOH HOH 180 A HOH 181 3 HOH HOH 181 A HOH 182 3 HOH HOH 182 A HOH 183 3 HOH HOH 183 A HOH 184 3 HOH HOH 184 A HOH 185 3 HOH HOH 185 A HOH 186 3 HOH HOH 186 A HOH 187 3 HOH HOH 187 A HOH 188 3 HOH HOH 188 A HOH 189 3 HOH HOH 189 A SER 1 n 1 SER 1 A ASP 2 n 2 ASP 2 A LYS 3 n 3 LYS 3 A ILE 4 n 4 ILE 4 A ILE 5 n 5 ILE 5 A HIS 6 n 6 HIS 6 A LEU 7 n 7 LEU 7 A THR 8 n 8 THR 8 A ASP 9 n 9 ASP 9 A ASP 10 n 10 ASP 10 A SER 11 n 11 SER 11 A PHE 12 n 12 PHE 12 A ASP 13 n 13 ASP 13 A THR 14 n 14 THR 14 A ASP 15 n 15 ASP 15 A VAL 16 n 16 VAL 16 A LEU 17 n 17 LEU 17 A LYS 18 n 18 LYS 18 A ALA 19 n 19 ALA 19 A ASP 20 n 20 ASP 20 A GLY 21 n 21 GLY 21 A ALA 22 n 22 ALA 22 A ILE 23 n 23 ILE 23 A LEU 24 n 24 LEU 24 A VAL 25 n 25 VAL 25 A ASP 26 n 26 ASP 26 A PHE 27 n 27 PHE 27 A TRP 28 n 28 TRP 28 A ALA 29 n 29 ALA 29 A GLU 30 n 30 GLU 30 A TRP 31 n 31 TRP 31 A CYS 32 n 32 CYS 32 A GLY 33 n 33 GLY 33 A PRO 34 n 34 PRO 34 A CYS 35 n 35 CYS 35 A GLU 36 n 36 GLU 36 A MET 37 n 37 MET 37 A ILE 38 n 38 ILE 38 A ALA 39 n 39 ALA 39 A PRO 40 n 40 PRO 40 A ILE 41 n 41 ILE 41 A LEU 42 n 42 LEU 42 A ASP 43 n 43 ASP 43 A GLU 44 n 44 GLU 44 A ILE 45 n 45 ILE 45 A ALA 46 n 46 ALA 46 A ASP 47 n 47 ASP 47 A GLU 48 n 48 GLU 48 A TYR 49 n 49 TYR 49 A GLN 50 n 50 GLN 50 A GLY 51 n 51 GLY 51 A LYS 52 n 52 LYS 52 A LEU 53 n 53 LEU 53 A THR 54 n 54 THR 54 A VAL 55 n 55 VAL 55 A ALA 56 n 56 ALA 56 A LYS 57 n 57 LYS 57 A LEU 58 n 58 LEU 58 A ASN 59 n 59 ASN 59 A ILE 60 n 60 ILE 60 A ASP 61 n 61 ASP 61 A GLN 62 n 62 GLN 62 A ASN 63 n 63 ASN 63 A PRO 64 n 64 PRO 64 A GLY 65 n 65 GLY 65 A THR 66 n 66 THR 66 A ALA 67 n 67 ALA 67 A PRO 68 n 68 PRO 68 A LYS 69 n 69 LYS 69 A TYR 70 n 70 TYR 70 A GLY 71 n 71 GLY 71 A ILE 72 n 72 ILE 72 A ARG 73 n 73 ARG 73 A GLY 74 n 74 GLY 74 A ILE 75 n 75 ILE 75 A PRO 76 n 76 PRO 76 A THR 77 n 77 THR 77 A LEU 78 n 78 LEU 78 A LEU 79 n 79 LEU 79 A LEU 80 n 80 LEU 80 A PHE 81 n 81 PHE 81 A LYS 82 n 82 LYS 82 A ASN 83 n 83 ASN 83 A GLY 84 n 84 GLY 84 A GLU 85 n 85 GLU 85 A VAL 86 n 86 VAL 86 A ALA 87 n 87 ALA 87 A ALA 88 n 88 ALA 88 A THR 89 n 89 THR 89 A LYS 90 n 90 LYS 90 A VAL 91 n 91 VAL 91 A GLY 92 n 92 GLY 92 A ALA 93 n 93 ALA 93 A LEU 94 n 94 LEU 94 A SER 95 n 95 SER 95 A LYS 96 n 96 LYS 96 A GLY 97 n 97 GLY 97 A GLN 98 n 98 GLN 98 A LEU 99 n 99 LEU 99 A LYS 100 n 100 LYS 100 A GLU 101 n 101 GLU 101 A PHE 102 n 102 PHE 102 A LEU 103 n 103 LEU 103 A ASP 104 n 104 ASP 104 A ALA 105 n 105 ALA 105 A ASN 106 n 106 ASN 106 A LEU 107 n 107 LEU 107 A ALA 108 n 108 ALA 108 A author_defined_assembly 1 monomeric A ASP 2 A OD2 ASP 2 1_555 A CU 109 B CU CU 1_555 A ASP 10 A OD1 ASP 10 4_575 86.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 -6.93 0.90 118.30 111.37 A A A CB CG OD1 ASP ASP ASP 2 2 2 N 1 4.95 0.80 106.30 111.25 A A A CD1 CG CD2 TRP TRP TRP 31 31 31 N 1 -4.90 0.80 107.30 102.40 A A A CE2 CD2 CG TRP TRP TRP 31 31 31 N 1 A ASP 2 -12.19 -37.97 1 A ARG 73 -119.89 -82.95 0.199 0.199 2.0 1 2.0 80 903 1 0 822 0.017 2.95 model building X-PLOR refinement X-PLOR phasing X-PLOR THIOREDOXIN MUTANT WITH LYS 36 REPLACED BY GLU (K36E) CRYSTAL STRUCTURE ANALYSIS OF A MUTANT ESCHERICHIA COLI THIOREDOXIN IN WHICH LYSINE 36 IS REPLACED BY GLUTAMIC ACID 1 N N 2 N N 3 N N A SER 11 A SER 11 HELX_P A LEU 17 A LEU 17 1 A1 7 A CYS 32 A CYS 32 HELX_P A TYR 49 A TYR 49 1 A2 18 A ASN 59 A ASN 59 HELX_P A ASN 63 A ASN 63 1 A3 5 A SER 95 A SER 95 HELX_P A LEU 107 A LEU 107 1 A4 13 disulf 2.040 A CYS 32 A SG CYS 32 1_555 A CYS 35 A SG CYS 35 1_555 metalc 2.270 A CU 109 B CU CU 1_555 A ASP 2 A OD2 ASP 2 1_555 metalc 2.670 A CU 109 B CU CU 1_555 A ASP 10 A OD1 ASP 10 4_575 ELECTRON TRANSPORT ELECTRON TRANSPORT A ILE 75 A ILE 75 1 A PRO 76 A PRO 76 3.18 THIO_ECOLI UNP 1 1 P0AA25 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL FKNGEVAATKVGALSKGQLKEFLDANLA 1 108 2TIR 1 108 P0AA25 A 1 1 108 1 LYS CONFLICT GLU 36 2TIR A P0AA25 UNP 36 36 5 parallel parallel anti-parallel anti-parallel A LYS 3 A LYS 3 A THR 8 A THR 8 A LEU 53 A LEU 53 A ASN 59 A ASN 59 A GLY 21 A GLY 21 A TRP 28 A TRP 28 A PRO 76 A PRO 76 A LYS 82 A LYS 82 A VAL 86 A VAL 86 A GLY 92 A GLY 92 BINDING SITE FOR RESIDUE CU A 109 Software 3 A SER 1 A SER 1 3 1_555 A ASP 2 A ASP 2 3 1_555 A ASP 10 A ASP 10 3 4_575 19 P 21 21 21