0.016260 0.000000 0.000000 0.000000 0.014815 0.000000 0.000070 0.000000 0.006689 0.00000 0.00000 0.00000 Westhof, E. Dumas, P. Moras, D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 61.500 67.500 149.500 C11 H16 N5 O8 P 377.247 n 1N-METHYLGUANOSINE-5'-MONOPHOSPHATE RNA linking C10 H16 N3 O8 P 337.223 n 5-METHYLCYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H15 N2 O9 P 338.208 n 5-METHYLURIDINE 5'-MONOPHOSPHATE RNA linking C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H15 N2 O9 P 326.197 n 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE RNA linking H2 O 18.015 WATER non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer C9 H13 N2 O9 P 324.181 n PSEUDOURIDINE-5'-MONOPHOSPHATE RNA linking C10 H26 N4 202.340 SPERMINE non-polymer C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N P N 2 N O N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C N 18 N C N 19 N O N 20 N N N 21 N C N 22 N C N 23 N N N 24 N N Y 25 N C N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N P N 43 N O N 44 N O N 45 N O N 46 N O N 47 N C N 48 R C N 49 N O N 50 S C N 51 N O N 52 R C N 53 N O N 54 R C N 55 N N N 56 N C N 57 N O N 58 N N N 59 N C N 60 N N N 61 N C N 62 N C N 63 N C N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N N N 81 N C N 82 N N N 83 N C N 84 N C N 85 N C N 86 N C N 87 N O N 88 N O N 89 R C N 90 R C N 91 N O N 92 S C N 93 R C N 94 N O N 95 N O N 96 N C N 97 N O N 98 N P N 99 N O N 100 N O N 101 N O N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N O N 118 N P N 119 N O N 120 N O N 121 N O N 122 N C N 123 R C N 124 N O N 125 S C N 126 N O N 127 R C N 128 N O N 129 R C Y 130 N N Y 131 N C Y 132 N N Y 133 N C Y 134 N C N 135 N N Y 136 N N Y 137 N C Y 138 N N Y 139 N C N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N O N 155 N P N 156 N O N 157 N O N 158 N O N 159 N C N 160 R C N 161 N O N 162 S C N 163 N O N 164 R C N 165 N O N 166 R C N 167 N N N 168 N C N 169 N O N 170 N N N 171 N C N 172 N N N 173 N C N 174 N C N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N O N 190 N P N 191 N O N 192 N O N 193 N O N 194 N C N 195 R C N 196 N O N 197 S C N 198 N O N 199 R C N 200 N O N 201 R C Y 202 N N Y 203 N C Y 204 N N Y 205 N C N 206 N C N 207 N O N 208 N N N 209 N C N 210 N N N 211 N N Y 212 N C N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N P N 228 N O N 229 N O N 230 N O N 231 N O N 232 N C N 233 R C N 234 N O N 235 S C N 236 N O N 237 R C N 238 R C N 239 N O N 240 N N N 241 N C N 242 N O N 243 N N N 244 N C N 245 N O N 246 N C N 247 N C N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N O N 264 N H N 265 N H N 266 N MG N 267 N N N 268 N C N 269 N N N 270 N C N 271 N C N 272 N C N 273 N O N 274 N O N 275 S C N 276 R C N 277 N O N 278 S C N 279 R C N 280 N O N 281 N O N 282 N C N 283 N O N 284 N P N 285 N O N 286 N O N 287 N O N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 N C N 303 N C N 304 N C N 305 N N N 306 N C N 307 N C N 308 N C N 309 N C N 310 N N N 311 N C N 312 N C N 313 N C N 314 N N N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N O N 342 N P N 343 N O N 344 N O N 345 N O N 346 N C N 347 R C N 348 N O N 349 S C N 350 N O N 351 R C N 352 N O N 353 R C N 354 N N N 355 N C N 356 N O N 357 N N N 358 N C N 359 N O N 360 N C N 361 N C N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing N 30 N sing Y 31 N doub N 32 N doub N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N doub N 41 N sing N 42 N sing N 43 N sing N 44 N doub N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N doub N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N doub N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N doub N 88 N sing N 89 N sing N 90 N sing N 91 N doub N 92 N sing N 93 N doub N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing Y 145 N sing Y 146 N sing Y 147 N doub N 148 N sing Y 149 N sing Y 150 N sing Y 151 N doub N 152 N sing Y 153 N doub N 154 N sing N 155 N sing Y 156 N sing Y 157 N doub N 158 N sing Y 159 N sing N 160 N sing N 161 N sing N 162 N doub N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N doub N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N doub N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing Y 220 N sing Y 221 N sing Y 222 N doub N 223 N sing Y 224 N sing N 225 N sing Y 226 N doub N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N doub N 233 N sing N 234 N sing N 235 N sing N 236 N doub N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N doub N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N doub N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N doub N 376 N sing N 377 N sing N 378 N sing N 379 N doub N 380 N sing N 381 N doub N 382 N sing N 383 N sing DK Acta Crystallogr.,Sect.A ACACEQ 0621 0108-7673 44 112 123 10.1107/S010876738700446X 3272146 Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer RNA crystals. 1988 FR Biochimie BICMBE 0466 0300-9084 70 145 Hydration of Transfer RNA Molecules. A Crystallographic Study 1988 DK Acta Crystallogr.,Sect.B ASBSDK 0622 0108-7681 42 272 Thee-Dimensional Structure of Yeast T-RNA-ASP. I. Structure Determination 1986 US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 83 932 Anticodon-Anticodon Interaction Induces Conformational Changes in T-RNA. Yeast T-RNA-ASP, a Model for T-RNA-M-RNA Recognition 1986 UK J.Mol.Biol. JMOBAK 0070 0022-2836 184 119 Crystallographic Refinement of Yeast Aspartic Acid Transfer RNA 1985 FR Biochimie BICMBE 0466 0300-9084 67 597 Crystal Structure of Yeast T-RNA-ASP. Atomic Coordinates 1985 US J.Biomol.Struct.Dyn. JBSDD6 0646 0739-1102 1 337 Loop Stereochemistry and Dynamics in Transfer RNA 1983 UK Nature NATUAS 0006 0028-0836 288 669 Crystal Structure of Yeast T-RNA-ASP 1980 UK J.Mol.Biol. JMOBAK 0070 0022-2836 115 91 Yeast Transfer RNA-ASP. A New High-Resolution X-Ray Diffracting Crystal Form of a Transfer RNA 1977 10.2210/pdb2tra/pdb pdb_00002tra 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 24181.369 TRNAASP 1 nat polymer 202.340 SPERMINE 1 syn non-polymer 24.305 MAGNESIUM ION 1 syn non-polymer 18.015 water 94 nat water no yes UCCGUGAUAGUU(PSU)AA(H2U)GG(H2U)CAGAAUGGGCGC(PSU)UGUC(1MG)CGUGCCAGAU(5MC)GGGG (5MU)(PSU)CAAUUCCCCGUCGCGGAGCCA UCCGUGAUAGUUUAAUGGUCAGAAUGGGCGCUUGUCGCGUGCCAGAUCGGGGUUCAAUUCCCCGUCGCGGAGCCA A polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n baker's yeast sample 4932 Saccharomyces cerevisiae 3.21 61.66 12.574 1 20 A 1 A 71 6.382 A_U1:A71_A 1 1.661 0.438 -0.215 -0.235 5.493 1 19 A 2 A 70 -0.328 A_C2:G70_A 2 -4.604 0.552 0.078 -0.050 8.990 1 19 A 3 A 69 -0.055 A_C3:G69_A 3 6.385 -0.590 -0.281 -0.030 2.725 1 19 A 4 A 68 7.410 A_G4:C68_A 4 -4.422 0.259 0.043 0.047 -1.476 1 28 A 5 A 67 4.469 A_U5:G67_A 5 1.994 2.196 -0.229 -0.474 0.254 1 19 A 6 A 66 -1.120 A_G6:C66_A 6 -10.287 -0.133 0.242 -0.157 -2.216 1 20 A 7 A 65 -10.302 A_A7:U65_A 7 -11.513 0.151 0.401 0.094 10.014 1 19 A 48 A 64 -3.892 A_5MC48:G64_A 8 -5.766 0.073 0.230 -0.153 6.645 1 19 A 49 A 63 1.910 A_G49:C63_A 9 -2.415 -0.164 -0.273 -0.155 -4.536 1 19 A 50 A 62 -0.701 A_G50:C62_A 10 2.017 -0.149 -0.503 -0.214 4.190 1 19 A 51 A 61 -0.488 A_G51:C61_A 11 -3.177 -0.046 -0.081 -0.126 -6.927 1 19 A 52 A 60 -2.189 A_G52:C60_A 12 6.425 -0.134 -0.013 -0.140 8.327 4 24 A 53 A 57 -93.764 A_5MU53:A57_A 13 12.392 4.562 0.358 -2.364 32.638 2 A 54 A 17 -106.615 A_PSU54:G17_A 14 6.876 0.200 0.479 -5.838 6.318 1 19 A 39 A 31 -0.134 A_G39:C31_A 15 -15.428 -0.365 -0.101 -0.135 -6.300 1 28 A 40 A 30 -2.242 A_U40:G30_A 16 -12.792 1.801 0.207 -0.332 4.409 1 19 A 41 A 29 0.474 A_G41:C29_A 17 -8.694 -0.525 0.492 -0.292 2.919 1 19 A 42 A 28 0.716 A_C42:G28_A 18 -7.842 0.105 -0.043 -0.213 -1.535 1 19 A 43 A 27 -4.033 A_C43:G27_A 19 -11.288 -0.581 0.410 -0.143 -18.407 8 A 44 A 26 -20.697 A_A44:G26_A 20 -14.554 0.012 -0.192 1.425 4.945 28 A 10 A 25 -1.994 A_G10:U25_A 21 4.263 -2.338 0.323 -0.558 -1.521 1 20 A 11 A 24 -1.146 A_U11:A24_A 22 -13.459 0.057 0.352 -0.147 -6.231 1 20 A 12 A 23 -6.756 A_U12:A23_A 23 1.193 -0.111 0.100 -0.007 0.940 1 27 A 13 A 22 -2.501 A_PSU13:G22_A 24 -11.931 1.459 0.427 -0.508 2.815 4 24 A 14 A 8 -97.097 A_A14:U8_A 25 6.687 -4.057 0.577 -2.028 3.993 2 21 A 15 A 47 168.947 A_A15:U47_A 26 -1.356 0.294 -0.716 0.894 -5.147 1 19 A 18 A 55 -0.755 A_G18:C55_A 27 -24.495 0.061 -0.114 -0.044 2.678 35.058 A A 1 2 12.273 A A 71 70 3.045 7.341 -0.209 -1.503 AA_U1C2:G70A71_AA 1 -0.272 0.455 34.303 -3.471 0.311 2.613 29.591 A A 2 3 17.860 A A 70 69 3.337 8.978 -0.164 -1.868 AA_C2C3:G69G70_AA 2 1.893 -3.766 28.163 -5.432 0.695 2.595 35.991 A A 3 4 21.818 A A 69 68 3.329 13.169 0.521 -1.543 AA_C3G4:C68G69_AA 3 3.254 -5.391 33.415 -4.262 -0.407 3.563 39.191 A A 4 5 1.315 A A 68 67 3.596 0.882 0.087 -1.557 AA_G4U5:G67C68_AA 4 0.953 -1.421 39.171 -2.436 -0.004 2.038 23.000 A A 5 6 18.339 A A 67 66 2.776 7.150 0.325 -1.998 AA_U5G6:C66G67_AA 5 4.322 -11.086 21.448 -6.929 0.344 2.485 40.852 A A 6 7 33.531 A A 66 65 3.513 22.202 -0.364 -0.867 AA_G6A7:U65C66_AA 6 3.435 -5.187 34.342 -3.696 0.901 2.524 32.466 A A 7 48 10.934 A A 65 64 2.867 6.076 0.197 -1.649 AA_A75MC48:G64U65_AA 7 1.568 -2.821 31.869 -3.837 -0.124 2.272 39.338 A A 48 49 21.249 A A 64 63 3.023 14.014 -0.280 -1.653 AA_5MC48G49:C63G64_AA 8 -0.256 0.388 36.849 -3.851 0.391 2.891 32.248 A A 49 50 22.497 A A 63 62 3.738 12.197 -0.582 -1.507 AA_G49G50:C62C63_AA 9 1.286 -2.372 29.883 -5.000 1.289 2.901 37.459 A A 50 51 7.677 A A 62 61 3.231 4.896 0.297 -1.692 AA_G50G51:C61C62_AA 10 -6.243 9.790 36.638 -3.244 -1.239 3.546 25.594 A A 51 52 -5.514 A A 61 60 3.298 -2.436 0.161 -2.783 AA_G51G52:C60C61_AA 11 2.202 -4.983 25.386 -5.556 0.293 3.137 90.925 A A 52 53 -1.545 A A 60 57 3.154 -2.203 -2.577 -2.181 AA_G525MU53:A57C60_AA 12 2.577 -1.808 90.876 -1.488 1.857 3.476 47.148 A A 53 54 -1.173 A A 57 17 3.433 -0.923 0.603 -1.401 AA_5MU53PSU54:G17A57_AA 13 15.415 -19.595 44.685 -1.669 0.620 3.777 41.129 A A 39 40 -0.642 A A 31 30 3.770 -0.451 0.051 -1.318 AA_G39U40:G30C31_AA 14 -2.044 2.910 41.078 -1.820 -0.328 1.788 18.826 A A 40 41 19.861 A A 30 29 2.825 6.356 0.066 -2.528 AA_U40G41:C29G30_AA 15 -2.140 6.688 17.601 -10.170 -1.024 2.936 38.996 A A 41 42 6.276 A A 29 28 3.161 4.179 -0.992 -1.309 AA_G41C42:G28C29_AA 16 2.708 -4.067 38.689 -2.433 1.792 3.383 34.600 A A 42 43 3.888 A A 28 27 3.508 2.311 0.189 -1.734 AA_C42C43:G27G28_AA 17 -0.717 1.206 34.517 -3.292 -0.435 2.264 35.784 A A 43 44 22.292 A A 27 26 3.357 13.274 -0.640 -1.787 AA_C43A44:G26G27_AA 18 7.903 -13.272 32.377 -4.639 2.071 1.612 55.510 A A 44 10 16.300 A A 26 25 2.746 15.002 -2.847 -3.186 AA_A44G10:U25G26_AA 19 5.033 -5.469 53.379 -4.017 3.257 3.179 47.459 A A 10 11 8.069 A A 25 24 3.370 6.474 -0.605 -1.450 AA_G10U11:A24U25_AA 20 -2.286 2.849 46.988 -2.328 0.566 3.032 35.243 A A 11 12 15.032 A A 24 23 3.404 8.996 -0.801 -1.295 AA_U11U12:A23A24_AA 21 -3.008 5.026 33.982 -3.479 0.876 3.414 22.858 A A 12 13 -8.363 A A 23 22 3.167 -3.295 0.651 -2.654 AA_U12PSU13:G22A23_AA 22 -2.717 6.896 22.460 -5.504 -2.626 3.258 76.885 A A 13 14 -8.509 A A 22 8 3.147 -10.554 -0.741 -1.427 AA_PSU13A14:U8G22_AA 23 3.826 -3.084 76.186 -0.847 0.705 3.985 -92.741 A A 14 15 -12.911 A A 8 47 3.781 18.606 1.156 -2.005 AA_A14A15:U47U8_AA 24 5.983 4.151 -91.121 0.963 0.935 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle pdbx_validate_polymer_linkage struct_conn struct_site repository Initial release Version format compliance Version format compliance Derived calculations Advisory Data collection Database references Derived calculations 1 0 1987-11-06 1 1 2008-05-22 1 2 2011-07-13 1 3 2016-06-22 1 4 2024-02-21 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.value _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y BNL 1987-11-06 REL REL SPM SPERMINE MG MAGNESIUM ION HOH water SPM 76 2 SPM SPM 76 A MO6 77 3 MG MG 77 A HOH 78 4 HOH HOH 78 A HOH 79 4 HOH HOH 79 A HOH 80 4 HOH HOH 80 A HOH 81 4 HOH HOH 81 A HOH 82 4 HOH HOH 82 A HOH 83 4 HOH HOH 83 A HOH 84 4 HOH HOH 84 A HOH 85 4 HOH HOH 85 A HOH 86 4 HOH HOH 86 A HOH 87 4 HOH HOH 87 A HOH 88 4 HOH HOH 88 A HOH 89 4 HOH HOH 89 A HOH 90 4 HOH HOH 90 A HOH 91 4 HOH HOH 91 A HOH 92 4 HOH HOH 92 A HOH 93 4 HOH HOH 93 A HOH 94 4 HOH HOH 94 A HOH 95 4 HOH HOH 95 A HOH 96 4 HOH HOH 96 A HOH 97 4 HOH HOH 97 A HOH 98 4 HOH HOH 98 A HOH 99 4 HOH HOH 99 A HOH 100 4 HOH HOH 100 A HOH 101 4 HOH HOH 101 A HOH 102 4 HOH HOH 102 A HOH 103 4 HOH HOH 103 A HOH 104 4 HOH HOH 104 A HOH 105 4 HOH HOH 105 A HOH 106 4 HOH HOH 106 A HOH 107 4 HOH HOH 107 A HOH 108 4 HOH HOH 108 A HOH 109 4 HOH HOH 109 A HOH 110 4 HOH HOH 110 A HOH 111 4 HOH HOH 111 A HOH 112 4 HOH HOH 112 A HOH 113 4 HOH HOH 113 A HOH 114 4 HOH HOH 114 A HOH 115 4 HOH HOH 115 A HOH 116 4 HOH HOH 116 A HOH 117 4 HOH HOH 117 A HOH 118 4 HOH HOH 118 A HOH 119 4 HOH HOH 119 A HOH 120 4 HOH HOH 120 A HOH 121 4 HOH HOH 121 A HOH 122 4 HOH HOH 122 A HOH 123 4 HOH HOH 123 A HOH 124 4 HOH HOH 124 A HOH 125 4 HOH HOH 125 A HOH 126 4 HOH HOH 126 A HOH 127 4 HOH HOH 127 A HOH 128 4 HOH HOH 128 A HOH 129 4 HOH HOH 129 A HOH 130 4 HOH HOH 130 A HOH 131 4 HOH HOH 131 A HOH 132 4 HOH HOH 132 A HOH 133 4 HOH HOH 133 A HOH 134 4 HOH HOH 134 A HOH 135 4 HOH HOH 135 A HOH 136 4 HOH HOH 136 A HOH 137 4 HOH HOH 137 A HOH 138 4 HOH HOH 138 A HOH 139 4 HOH HOH 139 A HOH 140 4 HOH HOH 140 A HOH 141 4 HOH HOH 141 A HOH 142 4 HOH HOH 142 A HOH 143 4 HOH HOH 143 A HOH 144 4 HOH HOH 144 A HOH 145 4 HOH HOH 145 A HOH 146 4 HOH HOH 146 A HOH 147 4 HOH HOH 147 A HOH 148 4 HOH HOH 148 A HOH 149 4 HOH HOH 149 A HOH 150 4 HOH HOH 150 A HOH 151 4 HOH HOH 151 A HOH 152 4 HOH HOH 152 A HOH 153 4 HOH HOH 153 A HOH 154 4 HOH HOH 154 A HOH 155 4 HOH HOH 155 A HOH 156 4 HOH HOH 156 A HOH 157 4 HOH HOH 157 A HOH 158 4 HOH HOH 158 A HOH 159 4 HOH HOH 159 A HOH 160 4 HOH HOH 160 A HOH 161 4 HOH HOH 161 A HOH 162 4 HOH HOH 162 A HOH 163 4 HOH HOH 163 A HOH 164 4 HOH HOH 164 A HOH 165 4 HOH HOH 165 A MO6 77 4 HOH HOH 166 A MO6 77 4 HOH HOH 167 A MO6 77 4 HOH HOH 168 A MO6 77 4 HOH HOH 169 A MO6 77 4 HOH HOH 170 A MO6 77 4 HOH HOH 171 A U 1 n 1 U 1 A C 2 n 2 C 2 A C 3 n 3 C 3 A G 4 n 4 G 4 A U 5 n 5 U 5 A G 6 n 6 G 6 A A 7 n 7 A 7 A U 8 n 8 U 8 A A 9 n 9 A 9 A G 10 n 10 G 10 A U 11 n 11 U 11 A U 12 n 12 U 12 A PSU 13 n 13 PSU 13 A A 14 n 14 A 14 A A 15 n 15 A 15 A H2U 16 n 16 H2U 16 A G 17 n 17 G 17 A G 18 n 18 G 18 A H2U 19 n 19 H2U 19 A C 20 n 20 C 20 A A 21 n 21 A 21 A G 22 n 22 G 22 A A 23 n 23 A 23 A A 24 n 24 A 24 A U 25 n 25 U 25 A G 26 n 26 G 26 A G 27 n 27 G 27 A G 28 n 28 G 28 A C 29 n 29 C 29 A G 30 n 30 G 30 A C 31 n 31 C 31 A PSU 32 n 32 PSU 32 A U 33 n 33 U 33 A G 34 n 34 G 34 A U 35 n 35 U 35 A C 36 n 36 C 36 A 1MG 37 n 37 1MG 37 A C 38 n 38 C 38 A G 39 n 39 G 39 A U 40 n 40 U 40 A G 41 n 41 G 41 A C 42 n 42 C 42 A C 43 n 43 C 43 A A 44 n 44 A 44 A G 45 n 45 G 45 A A 46 n 46 A 46 A U 47 n 47 U 47 A 5MC 48 n 48 5MC 48 A G 49 n 49 G 49 A G 50 n 50 G 50 A G 51 n 51 G 51 A G 52 n 52 G 52 A 5MU 53 n 53 5MU 53 A PSU 54 n 54 PSU 54 A C 55 n 55 C 55 A A 56 n 56 A 56 A A 57 n 57 A 57 A U 58 n 58 U 58 A U 59 n 59 U 59 A C 60 n 60 C 60 A C 61 n 61 C 61 A C 62 n 62 C 62 A C 63 n 63 C 63 A G 64 n 64 G 64 A U 65 n 65 U 65 A C 66 n 66 C 66 A G 67 n 67 G 67 A C 68 n 68 C 68 A G 69 n 69 G 69 A G 70 n 70 G 70 A A 71 n 71 A 71 A G 72 n 72 G 72 A C 73 n 73 C 73 A n 74 74 A n 75 75 A author_defined_assembly 1 monomeric A HOH 166 D O HOH 1_555 A MG 77 C MG MG 1_555 A HOH 167 D O HOH 1_555 179.8 A HOH 166 D O HOH 1_555 A MG 77 C MG MG 1_555 A HOH 168 D O HOH 1_555 90.0 A HOH 167 D O HOH 1_555 A MG 77 C MG MG 1_555 A HOH 168 D O HOH 1_555 90.1 A HOH 166 D O HOH 1_555 A MG 77 C MG MG 1_555 A HOH 169 D O HOH 1_555 90.1 A HOH 167 D O HOH 1_555 A MG 77 C MG MG 1_555 A HOH 169 D O HOH 1_555 89.8 A HOH 168 D O HOH 1_555 A MG 77 C MG MG 1_555 A HOH 169 D O HOH 1_555 179.5 A HOH 166 D O HOH 1_555 A MG 77 C MG MG 1_555 A HOH 170 D O HOH 1_555 90.0 A HOH 167 D O HOH 1_555 A MG 77 C MG MG 1_555 A HOH 170 D O HOH 1_555 89.9 A HOH 168 D O HOH 1_555 A MG 77 C MG MG 1_555 A HOH 170 D O HOH 1_555 90.1 A HOH 169 D O HOH 1_555 A MG 77 C MG MG 1_555 A HOH 170 D O HOH 1_555 90.4 A HOH 166 D O HOH 1_555 A MG 77 C MG MG 1_555 A HOH 171 D O HOH 1_555 90.1 A HOH 167 D O HOH 1_555 A MG 77 C MG MG 1_555 A HOH 171 D O HOH 1_555 90.0 A HOH 168 D O HOH 1_555 A MG 77 C MG MG 1_555 A HOH 171 D O HOH 1_555 89.7 A HOH 169 D O HOH 1_555 A MG 77 C MG MG 1_555 A HOH 171 D O HOH 1_555 89.8 A HOH 170 D O HOH 1_555 A MG 77 C MG MG 1_555 A HOH 171 D O HOH 1_555 179.8 A PSU 13 PSEUDOURIDINE-5'-MONOPHOSPHATE A PSU 13 U A H2U 16 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE A H2U 16 U A H2U 19 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE A H2U 19 U A PSU 32 PSEUDOURIDINE-5'-MONOPHOSPHATE A PSU 32 U A 1MG 37 1N-METHYLGUANOSINE-5'-MONOPHOSPHATE A 1MG 37 G A 5MC 48 5-METHYLCYTIDINE-5'-MONOPHOSPHATE A 5MC 48 C A 5MU 53 5-METHYLURIDINE 5'-MONOPHOSPHATE A 5MU 53 U A PSU 54 PSEUDOURIDINE-5'-MONOPHOSPHATE A PSU 54 U 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A HOH 124 D HOH 1 A C 74 A C 74 1 Y 1 A A 75 A A 75 1 Y 1 A A C3' OP2 PSU C 54 55 1.44 B 1 A A O3' P U G 33 34 14.39 B 1 A A O3' P 5MU PSU 53 54 1.26 B 1 A A O3' P PSU C 54 55 1.96 B 1 A A O3' P A G 71 72 1.24 B 1 A A O3' P G C 72 73 3.94 B 1 3.82 0.60 114.60 118.42 A A A N3 C4 C5 U U U 1 1 1 N 1 -5.21 0.70 119.40 114.19 A A A N3 C4 O4 U U U 1 1 1 N 1 -9.28 1.50 119.60 110.32 A A A OP1 P OP2 C C C 3 3 3 N 1 -7.43 1.10 112.00 104.57 A A A N1 C1' C2' C C C 3 3 3 N 1 6.39 0.70 108.50 114.89 A A A O4' C1' N1 C C C 3 3 3 N 1 -5.57 0.80 109.40 103.83 A A A O5' C5' C4' G G G 4 4 4 N 1 -7.78 1.20 119.70 111.92 A A A C3' O3' P G G U 4 4 5 Y 1 -4.45 0.60 127.00 122.55 A A A C2 N3 C4 U U U 5 5 5 N 1 3.90 0.60 114.60 118.50 A A A N3 C4 C5 U U U 5 5 5 N 1 4.49 0.70 108.50 112.99 A A A O4' C1' N9 A A A 7 7 7 N 1 3.95 0.60 114.60 118.55 A A A N3 C4 C5 U U U 8 8 8 N 1 -7.17 0.80 109.40 102.23 A A A O5' C5' C4' A A A 9 9 9 N 1 -3.22 0.50 129.30 126.08 A A A N1 C2 N3 A A A 9 9 9 N 1 -11.55 0.80 109.40 97.85 A A A O5' C5' C4' G G G 10 10 10 N 1 6.05 0.70 108.50 114.55 A A A O4' C1' N9 G G G 10 10 10 N 1 -9.44 0.80 109.40 99.96 A A A O5' C5' C4' U U U 11 11 11 N 1 -10.02 1.60 120.90 110.88 A A A P O5' C5' U U U 11 11 11 N 1 -3.81 0.60 127.00 123.19 A A A C2 N3 C4 U U U 11 11 11 N 1 3.82 0.60 114.60 118.42 A A A N3 C4 C5 U U U 11 11 11 N 1 -6.94 0.80 109.40 102.46 A A A O5' C5' C4' U U U 12 12 12 N 1 4.99 0.80 109.90 114.89 A A A C1' O4' C4' U U U 12 12 12 N 1 3.79 0.60 114.90 118.69 A A A N1 C2 N3 U U U 12 12 12 N 1 -5.80 0.60 127.00 121.20 A A A C2 N3 C4 U U U 12 12 12 N 1 4.34 0.60 114.60 118.94 A A A N3 C4 C5 U U U 12 12 12 N 1 -4.34 0.60 125.90 121.56 A A A C5 C4 O4 U U U 12 12 12 N 1 -3.15 0.50 117.70 114.55 A A A C5 C6 N1 A A A 14 14 14 N 1 -10.09 1.50 119.60 109.51 A A A OP1 P OP2 A A A 15 15 15 N 1 3.73 0.60 118.60 122.33 A A A C6 N1 C2 A A A 15 15 15 N 1 -3.80 0.50 129.30 125.50 A A A N1 C2 N3 A A A 15 15 15 N 1 3.88 0.60 118.60 122.48 A A A N1 C6 N6 A A A 15 15 15 N 1 -15.48 2.20 105.20 89.72 A A A O3' P OP2 G G G 17 18 18 B B Y 1 8.91 1.10 110.50 119.41 A A A O3' P OP1 G G G 17 18 18 B B Y 1 3.80 0.50 111.50 115.30 A A A C5 C6 N1 G G G 18 18 18 A A A N 1 3.35 0.50 111.50 114.85 A A A C5 C6 N1 G G G 18 18 18 B B B N 1 7.21 1.20 119.70 126.91 A A A C3' O3' P C C A 20 20 21 Y 1 -9.97 1.50 119.60 109.63 A A A OP1 P OP2 G G G 22 22 22 N 1 5.15 0.70 108.50 113.65 A A A O4' C1' N9 A A A 23 23 23 N 1 5.06 0.70 108.50 113.56 A A A O4' C1' N9 A A A 24 24 24 N 1 3.97 0.60 118.60 122.57 A A A C6 N1 C2 A A A 24 24 24 N 1 -3.22 0.50 129.30 126.08 A A A N1 C2 N3 A A A 24 24 24 N 1 -3.69 0.50 117.70 114.01 A A A C5 C6 N1 A A A 24 24 24 N 1 -5.59 0.80 109.40 103.81 A A A O5' C5' C4' U U U 25 25 25 N 1 -3.71 0.60 127.00 123.29 A A A C2 N3 C4 U U U 25 25 25 N 1 -5.20 0.80 109.40 104.20 A A A O5' C5' C4' G G G 26 26 26 N 1 3.36 0.50 111.50 114.86 A A A C5 C6 N1 G G G 26 26 26 N 1 -7.83 1.20 119.70 111.87 A A A C3' O3' P G G G 26 26 27 Y 1 7.61 1.20 110.70 118.31 A A A O5' P OP2 G G G 27 27 27 N 1 -5.25 0.80 109.40 104.15 A A A O5' C5' C4' G G G 28 28 28 N 1 4.42 0.70 108.50 112.92 A A A O4' C1' N1 C C C 29 29 29 N 1 -2.52 0.40 121.90 119.38 A A A N3 C4 C5 C C C 29 29 29 N 1 -9.14 1.50 119.60 110.46 A A A OP1 P OP2 G G G 30 30 30 N 1 5.50 0.80 109.90 115.40 A A A C1' O4' C4' G G G 30 30 30 N 1 7.61 0.70 108.50 116.11 A A A O4' C1' N9 G G G 30 30 30 N 1 3.29 0.50 111.50 114.79 A A A C5 C6 N1 G G G 30 30 30 N 1 -3.60 0.60 119.90 116.30 A A A N1 C6 O6 G G G 30 30 30 N 1 4.27 0.70 108.50 112.77 A A A O4' C1' N1 C C C 31 31 31 N 1 -4.16 0.60 127.00 122.84 A A A C2 N3 C4 U U U 33 33 33 N 1 4.42 0.60 114.60 119.02 A A A N3 C4 C5 U U U 33 33 33 N 1 3.37 0.50 111.50 114.87 A A A C5 C6 N1 G G G 34 34 34 A A A N 1 5.99 0.70 108.50 114.49 A A A O4' C1' N1 U U U 35 35 35 A A A N 1 -5.49 0.60 127.00 121.51 A A A C2 N3 C4 U U U 35 35 35 A A A N 1 -4.26 0.60 127.00 122.74 A A A C2 N3 C4 U U U 35 35 35 B B B N 1 4.86 0.60 114.60 119.46 A A A N3 C4 C5 U U U 35 35 35 A A A N 1 4.60 0.60 114.60 119.20 A A A N3 C4 C5 U U U 35 35 35 B B B N 1 7.30 1.20 119.70 127.00 A A A C3' O3' P U U C 35 35 36 B B B Y 1 -9.18 1.50 119.60 110.42 A A A OP1 P OP2 C C C 36 36 36 A A A N 1 -9.35 1.50 119.60 110.25 A A A OP1 P OP2 C C C 36 36 36 B B B N 1 -2.45 0.40 121.90 119.45 A A A N3 C4 C5 C C C 36 36 36 A A A N 1 -11.07 1.20 119.70 108.63 A A A C3' O3' P C C 1MG 36 36 37 A A Y 1 -8.14 0.80 109.40 101.26 A A A O5' C5' C4' C C C 38 38 38 N 1 4.93 0.70 108.50 113.43 A A A O4' C1' N1 C C C 38 38 38 N 1 9.98 1.20 110.70 120.68 A A A O5' P OP2 G G G 39 39 39 N 1 -10.29 0.80 109.40 99.11 A A A O5' C5' C4' U U U 40 40 40 N 1 -10.61 1.60 120.90 110.29 A A A P O5' C5' U U U 40 40 40 N 1 -5.13 0.60 127.00 121.87 A A A C2 N3 C4 U U U 40 40 40 N 1 4.51 0.60 114.60 119.11 A A A N3 C4 C5 U U U 40 40 40 N 1 -14.40 1.60 120.90 106.50 A A A P O5' C5' G G G 41 41 41 N 1 -12.46 1.50 119.60 107.14 A A A OP1 P OP2 C C C 42 42 42 N 1 -4.97 0.80 109.40 104.43 A A A O5' C5' C4' C C C 42 42 42 N 1 3.08 0.50 119.90 122.98 A A A C2 N3 C4 C C C 42 42 42 N 1 -10.35 1.20 119.70 109.35 A A A C3' O3' P C C C 42 42 43 Y 1 8.74 1.20 110.70 119.44 A A A O5' P OP2 C C C 43 43 43 N 1 -5.85 0.80 109.40 103.55 A A A O5' C5' C4' A A A 44 44 44 N 1 4.74 0.70 108.50 113.24 A A A O4' C1' N9 A A A 44 44 44 N 1 -8.77 1.10 112.00 103.23 A A A N9 C1' C2' G G G 45 45 45 N 1 10.28 0.70 108.50 118.78 A A A O4' C1' N9 G G G 45 45 45 N 1 -6.87 0.80 109.40 102.53 A A A O5' C5' C4' A A A 46 46 46 N 1 -11.77 1.60 120.90 109.13 A A A P O5' C5' A A A 46 46 46 N 1 -3.22 0.50 129.30 126.08 A A A N1 C2 N3 A A A 46 46 46 N 1 -9.46 1.50 119.60 110.14 A A A OP1 P OP2 U U U 47 47 47 N 1 -5.46 0.80 109.40 103.94 A A A O5' C5' C4' U U U 47 47 47 N 1 -4.54 0.60 127.00 122.46 A A A C2 N3 C4 U U U 47 47 47 N 1 4.12 0.60 114.60 118.72 A A A N3 C4 C5 U U U 47 47 47 N 1 -8.92 0.80 109.40 100.48 A A A O5' C5' C4' G G G 49 49 49 N 1 -7.25 1.10 112.00 104.75 A A A N9 C1' C2' G G G 51 51 51 N 1 4.58 0.70 108.50 113.08 A A A O4' C1' N9 G G G 51 51 51 N 1 3.48 0.50 111.50 114.98 A A A C5 C6 N1 G G G 51 51 51 N 1 3.45 0.50 111.50 114.95 A A A C5 C6 N1 G G G 52 52 52 N 1 -7.93 1.20 119.70 111.77 A A A C3' O3' P 5MU 5MU PSU 53 53 54 B Y 1 19.44 1.10 110.50 129.94 A A A O3' P OP2 5MU PSU PSU 53 54 54 B B Y 1 -16.24 2.20 105.20 88.96 A A A O3' P OP1 5MU PSU PSU 53 54 54 B B Y 1 -9.67 1.20 119.70 110.03 A A A C3' O3' P PSU PSU C 54 54 55 A A Y 1 -9.49 1.50 119.60 110.11 A A A OP1 P OP2 A A A 56 56 56 N 1 -3.05 0.50 117.70 114.65 A A A C5 C6 N1 A A A 56 56 56 N 1 -5.89 0.80 109.40 103.51 A A A O5' C5' C4' A A A 57 57 57 N 1 -3.52 0.50 129.30 125.78 A A A N1 C2 N3 A A A 57 57 57 N 1 -5.03 0.60 127.00 121.97 A A A C2 N3 C4 U U U 58 58 58 N 1 5.28 0.60 114.60 119.88 A A A N3 C4 C5 U U U 58 58 58 N 1 7.22 1.20 110.70 117.92 A A A O5' P OP2 U U U 59 59 59 N 1 -5.30 0.80 109.40 104.10 A A A O5' C5' C4' U U U 59 59 59 N 1 -4.51 0.60 127.00 122.49 A A A C2 N3 C4 U U U 59 59 59 N 1 4.17 0.60 114.60 118.77 A A A N3 C4 C5 U U U 59 59 59 N 1 -19.02 1.20 119.70 100.68 A A A C3' O3' P U U C 59 59 60 Y 1 -6.11 0.80 109.40 103.29 A A A O5' C5' C4' C C C 63 63 63 N 1 5.49 0.70 108.50 113.99 A A A O4' C1' N1 C C C 63 63 63 N 1 -2.77 0.40 121.90 119.13 A A A N3 C4 C5 C C C 63 63 63 N 1 -10.47 1.20 119.70 109.23 A A A C3' O3' P C C G 63 63 64 Y 1 -7.24 0.80 109.40 102.16 A A A O5' C5' C4' U U U 65 65 65 N 1 3.86 0.60 114.90 118.76 A A A N1 C2 N3 U U U 65 65 65 N 1 -5.11 0.60 127.00 121.89 A A A C2 N3 C4 U U U 65 65 65 N 1 4.36 0.60 114.60 118.96 A A A N3 C4 C5 U U U 65 65 65 N 1 -5.72 0.60 125.90 120.18 A A A C5 C4 O4 U U U 65 65 65 N 1 -9.81 1.50 119.60 109.79 A A A OP1 P OP2 C C C 66 66 66 N 1 -8.73 1.20 119.70 110.97 A A A C3' O3' P C C G 68 68 69 Y 1 -12.06 1.50 119.60 107.54 A A A OP1 P OP2 G G G 69 69 69 N 1 8.20 1.20 110.70 118.90 A A A O5' P OP2 G G G 69 69 69 N 1 -8.11 1.10 112.00 103.89 A A A N9 C1' C2' G G G 69 69 69 N 1 4.22 0.70 108.50 112.72 A A A O4' C1' N9 G G G 69 69 69 N 1 -3.69 0.60 125.10 121.41 A A A C6 N1 C2 G G G 69 69 69 N 1 3.26 0.50 111.50 114.76 A A A C5 C6 N1 G G G 69 69 69 N 1 -5.64 0.80 109.40 103.76 A A A O5' C5' C4' G G G 70 70 70 N 1 3.23 0.50 111.50 114.73 A A A C5 C6 N1 G G G 70 70 70 N 1 -8.13 1.20 119.70 111.57 A A A C3' O3' P G G A 70 70 71 Y 1 4.94 0.60 118.60 123.54 A A A C6 N1 C2 A A A 71 71 71 N 1 -3.10 0.50 129.30 126.20 A A A N1 C2 N3 A A A 71 71 71 N 1 -3.80 0.50 117.70 113.90 A A A C5 C6 N1 A A A 71 71 71 N 1 14.80 1.20 119.70 134.50 A A A C3' O3' P A A G 71 71 72 B Y 1 -26.74 1.90 104.00 77.26 A A A O3' P O5' A G G 71 72 72 B B Y 1 20.07 1.10 110.50 130.57 A A A O3' P OP1 A G G 71 72 72 B B Y 1 3.43 0.50 111.50 114.93 A A A C5 C6 N1 G G G 72 72 72 A A A N 1 -2.61 0.40 121.90 119.29 A A A N3 C4 C5 C C C 73 73 73 N 1 A A O3' P G G 17 18 -0.170 0.012 1.607 1.437 B Y 1 A A O3' P 5MU PSU 53 54 -0.347 0.012 1.607 1.260 B Y 1 A A O3' P A G 71 72 -0.370 0.012 1.607 1.237 B Y 1 A A O3' OP1 U G 33 34 1.77 B 1_555 3_554 1 A A N6 N3 A C 56 73 2.17 1_555 5_455 0.193 3.000 10.000 4335 1 2.000 3.000 10.000 94 1669 15 1560 0 0.012 0.022 refinement NUCLSQ RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS 1 N N 2 N N 3 N N 4 N N covale 1.609 both A U 12 A O3' U 12 1_555 A PSU 13 A P PSU 13 1_555 covale 1.611 both A PSU 13 A O3' PSU 13 1_555 A A 14 A P A 14 1_555 covale 1.602 both A A 15 A O3' A 15 1_555 A H2U 16 A P H2U 16 1_555 covale 1.612 both A H2U 16 A O3' H2U 16 1_555 A G 17 A P G 17 1_555 covale 1.608 both A A G 18 A O3' G 18 1_555 A H2U 19 A P H2U 19 1_555 covale 1.602 both A H2U 19 A O3' H2U 19 1_555 A C 20 A P C 20 1_555 covale 1.610 both A C 31 A O3' C 31 1_555 A PSU 32 A P PSU 32 1_555 covale 1.638 both A PSU 32 A O3' PSU 32 1_555 A U 33 A P U 33 1_555 covale 1.637 both A A C 36 A O3' C 36 1_555 A 1MG 37 A P 1MG 37 1_555 covale 1.613 both A 1MG 37 A O3' 1MG 37 1_555 A C 38 A P C 38 1_555 covale 1.613 both A U 47 A O3' U 47 1_555 A 5MC 48 A P 5MC 48 1_555 covale 1.603 both A 5MC 48 A O3' 5MC 48 1_555 A G 49 A P G 49 1_555 covale 1.626 both A G 52 A O3' G 52 1_555 A 5MU 53 A P 5MU 53 1_555 covale 1.623 both A A 5MU 53 A O3' 5MU 53 1_555 A PSU 54 A P PSU 54 1_555 covale 1.260 both B A 5MU 53 A O3' 5MU 53 1_555 A PSU 54 A P PSU 54 1_555 covale 1.623 both A A PSU 54 A O3' PSU 54 1_555 A C 55 A P C 55 1_555 covale 1.955 both B A PSU 54 A O3' PSU 54 1_555 A C 55 A P C 55 1_555 metalc 1.974 A MG 77 C MG MG 1_555 A HOH 166 D O HOH 1_555 metalc 1.978 A MG 77 C MG MG 1_555 A HOH 167 D O HOH 1_555 metalc 1.978 A MG 77 C MG MG 1_555 A HOH 168 D O HOH 1_555 metalc 1.987 A MG 77 C MG MG 1_555 A HOH 169 D O HOH 1_555 metalc 1.989 A MG 77 C MG MG 1_555 A HOH 170 D O HOH 1_555 metalc 1.985 A MG 77 C MG MG 1_555 A HOH 171 D O HOH 1_555 hydrog WATSON-CRICK A U 1 A N3 U 1 1_555 A A 71 A N1 A 71 1_555 hydrog WATSON-CRICK A U 1 A O4 U 1 1_555 A A 71 A N6 A 71 1_555 hydrog WATSON-CRICK A C 2 A N3 C 2 1_555 A G 70 A N1 G 70 1_555 hydrog WATSON-CRICK A C 2 A N4 C 2 1_555 A G 70 A O6 G 70 1_555 hydrog WATSON-CRICK A C 2 A O2 C 2 1_555 A G 70 A N2 G 70 1_555 hydrog WATSON-CRICK A C 3 A N3 C 3 1_555 A G 69 A N1 G 69 1_555 hydrog WATSON-CRICK A C 3 A N4 C 3 1_555 A G 69 A O6 G 69 1_555 hydrog WATSON-CRICK A C 3 A O2 C 3 1_555 A G 69 A N2 G 69 1_555 hydrog WATSON-CRICK A G 4 A N1 G 4 1_555 A C 68 A N3 C 68 1_555 hydrog WATSON-CRICK A G 4 A N2 G 4 1_555 A C 68 A O2 C 68 1_555 hydrog WATSON-CRICK A G 4 A O6 G 4 1_555 A C 68 A N4 C 68 1_555 hydrog TYPE_28_PAIR A U 5 A N3 U 5 1_555 A G 67 A O6 G 67 1_555 hydrog TYPE_28_PAIR A U 5 A O2 U 5 1_555 A G 67 A N1 G 67 1_555 hydrog WATSON-CRICK A G 6 A N1 G 6 1_555 A C 66 A N3 C 66 1_555 hydrog WATSON-CRICK A G 6 A N2 G 6 1_555 A C 66 A O2 C 66 1_555 hydrog WATSON-CRICK A G 6 A O6 G 6 1_555 A C 66 A N4 C 66 1_555 hydrog A-G MISPAIR A A 7 A N6 A 7 1_555 A G 64 A O6 G 64 1_555 hydrog WATSON-CRICK A A 7 A N1 A 7 1_555 A U 65 A N3 U 65 1_555 hydrog WATSON-CRICK A A 7 A N6 A 7 1_555 A U 65 A O4 U 65 1_555 hydrog REVERSED HOOGSTEEN A U 8 A N3 U 8 1_555 A A 14 A N7 A 14 1_555 hydrog REVERSED HOOGSTEEN A U 8 A O2 U 8 1_555 A A 14 A N6 A 14 1_555 hydrog TYPE_2_PAIR A A 9 A N6 A 9 1_555 A A 23 A N7 A 23 1_555 hydrog TYPE_2_PAIR A A 9 A N7 A 9 1_555 A A 23 A N6 A 23 1_555 hydrog TYPE_28_PAIR A G 10 A N1 G 10 1_555 A U 25 A O2 U 25 1_555 hydrog TYPE_28_PAIR A G 10 A O6 G 10 1_555 A U 25 A N3 U 25 1_555 hydrog G-G MISPAIR A G 10 A O6 G 10 1_555 A G 45 A N2 G 45 1_555 hydrog WATSON-CRICK A U 11 A N3 U 11 1_555 A A 24 A N1 A 24 1_555 hydrog WATSON-CRICK A U 11 A O4 U 11 1_555 A A 24 A N6 A 24 1_555 hydrog WATSON-CRICK A U 12 A N3 U 12 1_555 A A 23 A N1 A 23 1_555 hydrog WATSON-CRICK A U 12 A O4 U 12 1_555 A A 23 A N6 A 23 1_555 hydrog TYPE_27_PAIR A PSU 13 A N3 PSU 13 1_555 A G 22 A O6 G 22 1_555 hydrog TYPE_27_PAIR A PSU 13 A O4 PSU 13 1_555 A G 22 A N1 G 22 1_555 hydrog A-A MISPAIR A A 14 A N6 A 14 1_555 A A 21 A N3 A 21 1_555 hydrog REVERSED WATSON-CRICK A A 15 A N1 A 15 1_555 A U 47 A N3 U 47 1_555 hydrog REVERSED WATSON-CRICK A A 15 A N6 A 15 1_555 A U 47 A O2 U 47 1_555 hydrog G-PSU MISPAIR A A G 17 A N1 G 17 1_555 A PSU 54 A O4 PSU 54 1_555 hydrog WATSON-CRICK A A G 18 A N1 G 18 1_555 A C 55 A N3 C 55 1_555 hydrog WATSON-CRICK A A G 18 A N2 G 18 1_555 A C 55 A O2 C 55 1_555 hydrog WATSON-CRICK A A G 18 A O6 G 18 1_555 A C 55 A N4 C 55 1_555 hydrog G-A MISPAIR A G 22 A N7 G 22 1_555 A A 46 A N6 A 46 1_555 hydrog TYPE_8_PAIR A G 26 A N1 G 26 1_555 A A 44 A N1 A 44 1_555 hydrog TYPE_8_PAIR A G 26 A O6 G 26 1_555 A A 44 A N6 A 44 1_555 hydrog WATSON-CRICK A G 27 A N1 G 27 1_555 A C 43 A N3 C 43 1_555 hydrog WATSON-CRICK A G 27 A N2 G 27 1_555 A C 43 A O2 C 43 1_555 hydrog WATSON-CRICK A G 27 A O6 G 27 1_555 A C 43 A N4 C 43 1_555 hydrog WATSON-CRICK A G 28 A N1 G 28 1_555 A C 42 A N3 C 42 1_555 hydrog WATSON-CRICK A G 28 A N2 G 28 1_555 A C 42 A O2 C 42 1_555 hydrog WATSON-CRICK A G 28 A O6 G 28 1_555 A C 42 A N4 C 42 1_555 hydrog WATSON-CRICK A C 29 A N3 C 29 1_555 A G 41 A N1 G 41 1_555 hydrog WATSON-CRICK A C 29 A N4 C 29 1_555 A G 41 A O6 G 41 1_555 hydrog WATSON-CRICK A C 29 A O2 C 29 1_555 A G 41 A N2 G 41 1_555 hydrog TYPE_28_PAIR A G 30 A N1 G 30 1_555 A U 40 A O2 U 40 1_555 hydrog TYPE_28_PAIR A G 30 A O6 G 30 1_555 A U 40 A N3 U 40 1_555 hydrog WATSON-CRICK A C 31 A N3 C 31 1_555 A G 39 A N1 G 39 1_555 hydrog WATSON-CRICK A C 31 A N4 C 31 1_555 A G 39 A O6 G 39 1_555 hydrog WATSON-CRICK A C 31 A O2 C 31 1_555 A G 39 A N2 G 39 1_555 hydrog WATSON-CRICK A 5MC 48 A N3 5MC 48 1_555 A G 64 A N1 G 64 1_555 hydrog WATSON-CRICK A 5MC 48 A N4 5MC 48 1_555 A G 64 A O6 G 64 1_555 hydrog WATSON-CRICK A 5MC 48 A O2 5MC 48 1_555 A G 64 A N2 G 64 1_555 hydrog WATSON-CRICK A G 49 A N1 G 49 1_555 A C 63 A N3 C 63 1_555 hydrog WATSON-CRICK A G 49 A N2 G 49 1_555 A C 63 A O2 C 63 1_555 hydrog WATSON-CRICK A G 49 A O6 G 49 1_555 A C 63 A N4 C 63 1_555 hydrog WATSON-CRICK A G 50 A N1 G 50 1_555 A C 62 A N3 C 62 1_555 hydrog WATSON-CRICK A G 50 A N2 G 50 1_555 A C 62 A O2 C 62 1_555 hydrog WATSON-CRICK A G 50 A O6 G 50 1_555 A C 62 A N4 C 62 1_555 hydrog WATSON-CRICK A G 51 A N1 G 51 1_555 A C 61 A N3 C 61 1_555 hydrog WATSON-CRICK A G 51 A N2 G 51 1_555 A C 61 A O2 C 61 1_555 hydrog WATSON-CRICK A G 51 A O6 G 51 1_555 A C 61 A N4 C 61 1_555 hydrog WATSON-CRICK A G 52 A N1 G 52 1_555 A C 60 A N3 C 60 1_555 hydrog WATSON-CRICK A G 52 A N2 G 52 1_555 A C 60 A O2 C 60 1_555 hydrog WATSON-CRICK A G 52 A O6 G 52 1_555 A C 60 A N4 C 60 1_555 hydrog REVERSED HOOGSTEEN A 5MU 53 A N3 5MU 53 1_555 A A 57 A N7 A 57 1_555 hydrog REVERSED HOOGSTEEN A 5MU 53 A O2 5MU 53 1_555 A A 57 A N6 A 57 1_555 T-RNA T-RNA, SINGLE STRAND, LOOPS 2TRA PDB 1 2TRA 1 75 2TRA 1 75 2TRA A 1 1 75 BINDING SITE FOR RESIDUE SPM A 76 A SPM 76 Software 7 BINDING SITE FOR RESIDUE MG A 77 A MG 77 Software 7 A U 5 A U 5 7 1_555 A G 6 A G 6 7 1_555 A H2U 19 A H2U 19 7 5_545 A G 67 A G 67 7 1_555 A HOH 147 D HOH 7 1_555 A HOH 150 D HOH 7 1_555 A HOH 161 D HOH 7 1_555 A C 31 A C 31 7 1_555 A HOH 166 D HOH 7 1_555 A HOH 167 D HOH 7 1_555 A HOH 168 D HOH 7 1_555 A HOH 169 D HOH 7 1_555 A HOH 170 D HOH 7 1_555 A HOH 171 D HOH 7 1_555 20 C 2 2 21