0.016260
0.000000
0.000000
0.000000
0.014815
0.000000
0.000070
0.000000
0.006689
0.00000
0.00000
0.00000
Westhof, E.
Dumas, P.
Moras, D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
61.500
67.500
149.500
C11 H16 N5 O8 P
377.247
n
1N-METHYLGUANOSINE-5'-MONOPHOSPHATE
RNA linking
C10 H16 N3 O8 P
337.223
n
5-METHYLCYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H15 N2 O9 P
338.208
n
5-METHYLURIDINE 5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H15 N2 O9 P
326.197
n
5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
RNA linking
H2 O
18.015
WATER
non-polymer
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H13 N2 O9 P
324.181
n
PSEUDOURIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H26 N4
202.340
SPERMINE
non-polymer
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
N
18
N
C
N
19
N
O
N
20
N
N
N
21
N
C
N
22
N
C
N
23
N
N
N
24
N
N
Y
25
N
C
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
P
N
43
N
O
N
44
N
O
N
45
N
O
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
O
N
50
S
C
N
51
N
O
N
52
R
C
N
53
N
O
N
54
R
C
N
55
N
N
N
56
N
C
N
57
N
O
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
C
N
62
N
C
N
63
N
C
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
N
N
81
N
C
N
82
N
N
N
83
N
C
N
84
N
C
N
85
N
C
N
86
N
C
N
87
N
O
N
88
N
O
N
89
R
C
N
90
R
C
N
91
N
O
N
92
S
C
N
93
R
C
N
94
N
O
N
95
N
O
N
96
N
C
N
97
N
O
N
98
N
P
N
99
N
O
N
100
N
O
N
101
N
O
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
O
N
118
N
P
N
119
N
O
N
120
N
O
N
121
N
O
N
122
N
C
N
123
R
C
N
124
N
O
N
125
S
C
N
126
N
O
N
127
R
C
N
128
N
O
N
129
R
C
Y
130
N
N
Y
131
N
C
Y
132
N
N
Y
133
N
C
Y
134
N
C
N
135
N
N
Y
136
N
N
Y
137
N
C
Y
138
N
N
Y
139
N
C
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
O
N
155
N
P
N
156
N
O
N
157
N
O
N
158
N
O
N
159
N
C
N
160
R
C
N
161
N
O
N
162
S
C
N
163
N
O
N
164
R
C
N
165
N
O
N
166
R
C
N
167
N
N
N
168
N
C
N
169
N
O
N
170
N
N
N
171
N
C
N
172
N
N
N
173
N
C
N
174
N
C
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
O
N
190
N
P
N
191
N
O
N
192
N
O
N
193
N
O
N
194
N
C
N
195
R
C
N
196
N
O
N
197
S
C
N
198
N
O
N
199
R
C
N
200
N
O
N
201
R
C
Y
202
N
N
Y
203
N
C
Y
204
N
N
Y
205
N
C
N
206
N
C
N
207
N
O
N
208
N
N
N
209
N
C
N
210
N
N
N
211
N
N
Y
212
N
C
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
P
N
228
N
O
N
229
N
O
N
230
N
O
N
231
N
O
N
232
N
C
N
233
R
C
N
234
N
O
N
235
S
C
N
236
N
O
N
237
R
C
N
238
R
C
N
239
N
O
N
240
N
N
N
241
N
C
N
242
N
O
N
243
N
N
N
244
N
C
N
245
N
O
N
246
N
C
N
247
N
C
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
MG
N
267
N
N
N
268
N
C
N
269
N
N
N
270
N
C
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
O
N
275
S
C
N
276
R
C
N
277
N
O
N
278
S
C
N
279
R
C
N
280
N
O
N
281
N
O
N
282
N
C
N
283
N
O
N
284
N
P
N
285
N
O
N
286
N
O
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
N
C
N
303
N
C
N
304
N
C
N
305
N
N
N
306
N
C
N
307
N
C
N
308
N
C
N
309
N
C
N
310
N
N
N
311
N
C
N
312
N
C
N
313
N
C
N
314
N
N
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
O
N
342
N
P
N
343
N
O
N
344
N
O
N
345
N
O
N
346
N
C
N
347
R
C
N
348
N
O
N
349
S
C
N
350
N
O
N
351
R
C
N
352
N
O
N
353
R
C
N
354
N
N
N
355
N
C
N
356
N
O
N
357
N
N
N
358
N
C
N
359
N
O
N
360
N
C
N
361
N
C
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
N
30
N
sing
Y
31
N
doub
N
32
N
doub
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
doub
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
doub
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
doub
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
Y
145
N
sing
Y
146
N
sing
Y
147
N
doub
N
148
N
sing
Y
149
N
sing
Y
150
N
sing
Y
151
N
doub
N
152
N
sing
Y
153
N
doub
N
154
N
sing
N
155
N
sing
Y
156
N
sing
Y
157
N
doub
N
158
N
sing
Y
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
doub
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
Y
220
N
sing
Y
221
N
sing
Y
222
N
doub
N
223
N
sing
Y
224
N
sing
N
225
N
sing
Y
226
N
doub
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
doub
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
doub
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
doub
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
DK
Acta Crystallogr.,Sect.A
ACACEQ
0621
0108-7673
44
112
123
10.1107/S010876738700446X
3272146
Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer RNA crystals.
1988
FR
Biochimie
BICMBE
0466
0300-9084
70
145
Hydration of Transfer RNA Molecules. A Crystallographic Study
1988
DK
Acta Crystallogr.,Sect.B
ASBSDK
0622
0108-7681
42
272
Thee-Dimensional Structure of Yeast T-RNA-ASP. I. Structure Determination
1986
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
83
932
Anticodon-Anticodon Interaction Induces Conformational Changes in T-RNA. Yeast T-RNA-ASP, a Model for T-RNA-M-RNA Recognition
1986
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
184
119
Crystallographic Refinement of Yeast Aspartic Acid Transfer RNA
1985
FR
Biochimie
BICMBE
0466
0300-9084
67
597
Crystal Structure of Yeast T-RNA-ASP. Atomic Coordinates
1985
US
J.Biomol.Struct.Dyn.
JBSDD6
0646
0739-1102
1
337
Loop Stereochemistry and Dynamics in Transfer RNA
1983
UK
Nature
NATUAS
0006
0028-0836
288
669
Crystal Structure of Yeast T-RNA-ASP
1980
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
115
91
Yeast Transfer RNA-ASP. A New High-Resolution X-Ray Diffracting Crystal Form of a Transfer RNA
1977
10.2210/pdb2tra/pdb
pdb_00002tra
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
24181.369
TRNAASP
1
nat
polymer
202.340
SPERMINE
1
syn
non-polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
18.015
water
94
nat
water
no
yes
UCCGUGAUAGUU(PSU)AA(H2U)GG(H2U)CAGAAUGGGCGC(PSU)UGUC(1MG)CGUGCCAGAU(5MC)GGGG
(5MU)(PSU)CAAUUCCCCGUCGCGGAGCCA
UCCGUGAUAGUUUAAUGGUCAGAAUGGGCGCUUGUCGCGUGCCAGAUCGGGGUUCAAUUCCCCGUCGCGGAGCCA
A
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
baker's yeast
sample
4932
Saccharomyces cerevisiae
3.21
61.66
12.574
1
20
A
1
A
71
6.382
A_U1:A71_A
1
1.661
0.438
-0.215
-0.235
5.493
1
19
A
2
A
70
-0.328
A_C2:G70_A
2
-4.604
0.552
0.078
-0.050
8.990
1
19
A
3
A
69
-0.055
A_C3:G69_A
3
6.385
-0.590
-0.281
-0.030
2.725
1
19
A
4
A
68
7.410
A_G4:C68_A
4
-4.422
0.259
0.043
0.047
-1.476
1
28
A
5
A
67
4.469
A_U5:G67_A
5
1.994
2.196
-0.229
-0.474
0.254
1
19
A
6
A
66
-1.120
A_G6:C66_A
6
-10.287
-0.133
0.242
-0.157
-2.216
1
20
A
7
A
65
-10.302
A_A7:U65_A
7
-11.513
0.151
0.401
0.094
10.014
1
19
A
48
A
64
-3.892
A_5MC48:G64_A
8
-5.766
0.073
0.230
-0.153
6.645
1
19
A
49
A
63
1.910
A_G49:C63_A
9
-2.415
-0.164
-0.273
-0.155
-4.536
1
19
A
50
A
62
-0.701
A_G50:C62_A
10
2.017
-0.149
-0.503
-0.214
4.190
1
19
A
51
A
61
-0.488
A_G51:C61_A
11
-3.177
-0.046
-0.081
-0.126
-6.927
1
19
A
52
A
60
-2.189
A_G52:C60_A
12
6.425
-0.134
-0.013
-0.140
8.327
4
24
A
53
A
57
-93.764
A_5MU53:A57_A
13
12.392
4.562
0.358
-2.364
32.638
2
A
54
A
17
-106.615
A_PSU54:G17_A
14
6.876
0.200
0.479
-5.838
6.318
1
19
A
39
A
31
-0.134
A_G39:C31_A
15
-15.428
-0.365
-0.101
-0.135
-6.300
1
28
A
40
A
30
-2.242
A_U40:G30_A
16
-12.792
1.801
0.207
-0.332
4.409
1
19
A
41
A
29
0.474
A_G41:C29_A
17
-8.694
-0.525
0.492
-0.292
2.919
1
19
A
42
A
28
0.716
A_C42:G28_A
18
-7.842
0.105
-0.043
-0.213
-1.535
1
19
A
43
A
27
-4.033
A_C43:G27_A
19
-11.288
-0.581
0.410
-0.143
-18.407
8
A
44
A
26
-20.697
A_A44:G26_A
20
-14.554
0.012
-0.192
1.425
4.945
28
A
10
A
25
-1.994
A_G10:U25_A
21
4.263
-2.338
0.323
-0.558
-1.521
1
20
A
11
A
24
-1.146
A_U11:A24_A
22
-13.459
0.057
0.352
-0.147
-6.231
1
20
A
12
A
23
-6.756
A_U12:A23_A
23
1.193
-0.111
0.100
-0.007
0.940
1
27
A
13
A
22
-2.501
A_PSU13:G22_A
24
-11.931
1.459
0.427
-0.508
2.815
4
24
A
14
A
8
-97.097
A_A14:U8_A
25
6.687
-4.057
0.577
-2.028
3.993
2
21
A
15
A
47
168.947
A_A15:U47_A
26
-1.356
0.294
-0.716
0.894
-5.147
1
19
A
18
A
55
-0.755
A_G18:C55_A
27
-24.495
0.061
-0.114
-0.044
2.678
35.058
A
A
1
2
12.273
A
A
71
70
3.045
7.341
-0.209
-1.503
AA_U1C2:G70A71_AA
1
-0.272
0.455
34.303
-3.471
0.311
2.613
29.591
A
A
2
3
17.860
A
A
70
69
3.337
8.978
-0.164
-1.868
AA_C2C3:G69G70_AA
2
1.893
-3.766
28.163
-5.432
0.695
2.595
35.991
A
A
3
4
21.818
A
A
69
68
3.329
13.169
0.521
-1.543
AA_C3G4:C68G69_AA
3
3.254
-5.391
33.415
-4.262
-0.407
3.563
39.191
A
A
4
5
1.315
A
A
68
67
3.596
0.882
0.087
-1.557
AA_G4U5:G67C68_AA
4
0.953
-1.421
39.171
-2.436
-0.004
2.038
23.000
A
A
5
6
18.339
A
A
67
66
2.776
7.150
0.325
-1.998
AA_U5G6:C66G67_AA
5
4.322
-11.086
21.448
-6.929
0.344
2.485
40.852
A
A
6
7
33.531
A
A
66
65
3.513
22.202
-0.364
-0.867
AA_G6A7:U65C66_AA
6
3.435
-5.187
34.342
-3.696
0.901
2.524
32.466
A
A
7
48
10.934
A
A
65
64
2.867
6.076
0.197
-1.649
AA_A75MC48:G64U65_AA
7
1.568
-2.821
31.869
-3.837
-0.124
2.272
39.338
A
A
48
49
21.249
A
A
64
63
3.023
14.014
-0.280
-1.653
AA_5MC48G49:C63G64_AA
8
-0.256
0.388
36.849
-3.851
0.391
2.891
32.248
A
A
49
50
22.497
A
A
63
62
3.738
12.197
-0.582
-1.507
AA_G49G50:C62C63_AA
9
1.286
-2.372
29.883
-5.000
1.289
2.901
37.459
A
A
50
51
7.677
A
A
62
61
3.231
4.896
0.297
-1.692
AA_G50G51:C61C62_AA
10
-6.243
9.790
36.638
-3.244
-1.239
3.546
25.594
A
A
51
52
-5.514
A
A
61
60
3.298
-2.436
0.161
-2.783
AA_G51G52:C60C61_AA
11
2.202
-4.983
25.386
-5.556
0.293
3.137
90.925
A
A
52
53
-1.545
A
A
60
57
3.154
-2.203
-2.577
-2.181
AA_G525MU53:A57C60_AA
12
2.577
-1.808
90.876
-1.488
1.857
3.476
47.148
A
A
53
54
-1.173
A
A
57
17
3.433
-0.923
0.603
-1.401
AA_5MU53PSU54:G17A57_AA
13
15.415
-19.595
44.685
-1.669
0.620
3.777
41.129
A
A
39
40
-0.642
A
A
31
30
3.770
-0.451
0.051
-1.318
AA_G39U40:G30C31_AA
14
-2.044
2.910
41.078
-1.820
-0.328
1.788
18.826
A
A
40
41
19.861
A
A
30
29
2.825
6.356
0.066
-2.528
AA_U40G41:C29G30_AA
15
-2.140
6.688
17.601
-10.170
-1.024
2.936
38.996
A
A
41
42
6.276
A
A
29
28
3.161
4.179
-0.992
-1.309
AA_G41C42:G28C29_AA
16
2.708
-4.067
38.689
-2.433
1.792
3.383
34.600
A
A
42
43
3.888
A
A
28
27
3.508
2.311
0.189
-1.734
AA_C42C43:G27G28_AA
17
-0.717
1.206
34.517
-3.292
-0.435
2.264
35.784
A
A
43
44
22.292
A
A
27
26
3.357
13.274
-0.640
-1.787
AA_C43A44:G26G27_AA
18
7.903
-13.272
32.377
-4.639
2.071
1.612
55.510
A
A
44
10
16.300
A
A
26
25
2.746
15.002
-2.847
-3.186
AA_A44G10:U25G26_AA
19
5.033
-5.469
53.379
-4.017
3.257
3.179
47.459
A
A
10
11
8.069
A
A
25
24
3.370
6.474
-0.605
-1.450
AA_G10U11:A24U25_AA
20
-2.286
2.849
46.988
-2.328
0.566
3.032
35.243
A
A
11
12
15.032
A
A
24
23
3.404
8.996
-0.801
-1.295
AA_U11U12:A23A24_AA
21
-3.008
5.026
33.982
-3.479
0.876
3.414
22.858
A
A
12
13
-8.363
A
A
23
22
3.167
-3.295
0.651
-2.654
AA_U12PSU13:G22A23_AA
22
-2.717
6.896
22.460
-5.504
-2.626
3.258
76.885
A
A
13
14
-8.509
A
A
22
8
3.147
-10.554
-0.741
-1.427
AA_PSU13A14:U8G22_AA
23
3.826
-3.084
76.186
-0.847
0.705
3.985
-92.741
A
A
14
15
-12.911
A
A
8
47
3.781
18.606
1.156
-2.005
AA_A14A15:U47U8_AA
24
5.983
4.151
-91.121
0.963
0.935
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
pdbx_validate_polymer_linkage
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Derived calculations
Advisory
Data collection
Database references
Derived calculations
1
0
1987-11-06
1
1
2008-05-22
1
2
2011-07-13
1
3
2016-06-22
1
4
2024-02-21
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
BNL
1987-11-06
REL
REL
SPM
SPERMINE
MG
MAGNESIUM ION
HOH
water
SPM
76
2
SPM
SPM
76
A
MO6
77
3
MG
MG
77
A
HOH
78
4
HOH
HOH
78
A
HOH
79
4
HOH
HOH
79
A
HOH
80
4
HOH
HOH
80
A
HOH
81
4
HOH
HOH
81
A
HOH
82
4
HOH
HOH
82
A
HOH
83
4
HOH
HOH
83
A
HOH
84
4
HOH
HOH
84
A
HOH
85
4
HOH
HOH
85
A
HOH
86
4
HOH
HOH
86
A
HOH
87
4
HOH
HOH
87
A
HOH
88
4
HOH
HOH
88
A
HOH
89
4
HOH
HOH
89
A
HOH
90
4
HOH
HOH
90
A
HOH
91
4
HOH
HOH
91
A
HOH
92
4
HOH
HOH
92
A
HOH
93
4
HOH
HOH
93
A
HOH
94
4
HOH
HOH
94
A
HOH
95
4
HOH
HOH
95
A
HOH
96
4
HOH
HOH
96
A
HOH
97
4
HOH
HOH
97
A
HOH
98
4
HOH
HOH
98
A
HOH
99
4
HOH
HOH
99
A
HOH
100
4
HOH
HOH
100
A
HOH
101
4
HOH
HOH
101
A
HOH
102
4
HOH
HOH
102
A
HOH
103
4
HOH
HOH
103
A
HOH
104
4
HOH
HOH
104
A
HOH
105
4
HOH
HOH
105
A
HOH
106
4
HOH
HOH
106
A
HOH
107
4
HOH
HOH
107
A
HOH
108
4
HOH
HOH
108
A
HOH
109
4
HOH
HOH
109
A
HOH
110
4
HOH
HOH
110
A
HOH
111
4
HOH
HOH
111
A
HOH
112
4
HOH
HOH
112
A
HOH
113
4
HOH
HOH
113
A
HOH
114
4
HOH
HOH
114
A
HOH
115
4
HOH
HOH
115
A
HOH
116
4
HOH
HOH
116
A
HOH
117
4
HOH
HOH
117
A
HOH
118
4
HOH
HOH
118
A
HOH
119
4
HOH
HOH
119
A
HOH
120
4
HOH
HOH
120
A
HOH
121
4
HOH
HOH
121
A
HOH
122
4
HOH
HOH
122
A
HOH
123
4
HOH
HOH
123
A
HOH
124
4
HOH
HOH
124
A
HOH
125
4
HOH
HOH
125
A
HOH
126
4
HOH
HOH
126
A
HOH
127
4
HOH
HOH
127
A
HOH
128
4
HOH
HOH
128
A
HOH
129
4
HOH
HOH
129
A
HOH
130
4
HOH
HOH
130
A
HOH
131
4
HOH
HOH
131
A
HOH
132
4
HOH
HOH
132
A
HOH
133
4
HOH
HOH
133
A
HOH
134
4
HOH
HOH
134
A
HOH
135
4
HOH
HOH
135
A
HOH
136
4
HOH
HOH
136
A
HOH
137
4
HOH
HOH
137
A
HOH
138
4
HOH
HOH
138
A
HOH
139
4
HOH
HOH
139
A
HOH
140
4
HOH
HOH
140
A
HOH
141
4
HOH
HOH
141
A
HOH
142
4
HOH
HOH
142
A
HOH
143
4
HOH
HOH
143
A
HOH
144
4
HOH
HOH
144
A
HOH
145
4
HOH
HOH
145
A
HOH
146
4
HOH
HOH
146
A
HOH
147
4
HOH
HOH
147
A
HOH
148
4
HOH
HOH
148
A
HOH
149
4
HOH
HOH
149
A
HOH
150
4
HOH
HOH
150
A
HOH
151
4
HOH
HOH
151
A
HOH
152
4
HOH
HOH
152
A
HOH
153
4
HOH
HOH
153
A
HOH
154
4
HOH
HOH
154
A
HOH
155
4
HOH
HOH
155
A
HOH
156
4
HOH
HOH
156
A
HOH
157
4
HOH
HOH
157
A
HOH
158
4
HOH
HOH
158
A
HOH
159
4
HOH
HOH
159
A
HOH
160
4
HOH
HOH
160
A
HOH
161
4
HOH
HOH
161
A
HOH
162
4
HOH
HOH
162
A
HOH
163
4
HOH
HOH
163
A
HOH
164
4
HOH
HOH
164
A
HOH
165
4
HOH
HOH
165
A
MO6
77
4
HOH
HOH
166
A
MO6
77
4
HOH
HOH
167
A
MO6
77
4
HOH
HOH
168
A
MO6
77
4
HOH
HOH
169
A
MO6
77
4
HOH
HOH
170
A
MO6
77
4
HOH
HOH
171
A
U
1
n
1
U
1
A
C
2
n
2
C
2
A
C
3
n
3
C
3
A
G
4
n
4
G
4
A
U
5
n
5
U
5
A
G
6
n
6
G
6
A
A
7
n
7
A
7
A
U
8
n
8
U
8
A
A
9
n
9
A
9
A
G
10
n
10
G
10
A
U
11
n
11
U
11
A
U
12
n
12
U
12
A
PSU
13
n
13
PSU
13
A
A
14
n
14
A
14
A
A
15
n
15
A
15
A
H2U
16
n
16
H2U
16
A
G
17
n
17
G
17
A
G
18
n
18
G
18
A
H2U
19
n
19
H2U
19
A
C
20
n
20
C
20
A
A
21
n
21
A
21
A
G
22
n
22
G
22
A
A
23
n
23
A
23
A
A
24
n
24
A
24
A
U
25
n
25
U
25
A
G
26
n
26
G
26
A
G
27
n
27
G
27
A
G
28
n
28
G
28
A
C
29
n
29
C
29
A
G
30
n
30
G
30
A
C
31
n
31
C
31
A
PSU
32
n
32
PSU
32
A
U
33
n
33
U
33
A
G
34
n
34
G
34
A
U
35
n
35
U
35
A
C
36
n
36
C
36
A
1MG
37
n
37
1MG
37
A
C
38
n
38
C
38
A
G
39
n
39
G
39
A
U
40
n
40
U
40
A
G
41
n
41
G
41
A
C
42
n
42
C
42
A
C
43
n
43
C
43
A
A
44
n
44
A
44
A
G
45
n
45
G
45
A
A
46
n
46
A
46
A
U
47
n
47
U
47
A
5MC
48
n
48
5MC
48
A
G
49
n
49
G
49
A
G
50
n
50
G
50
A
G
51
n
51
G
51
A
G
52
n
52
G
52
A
5MU
53
n
53
5MU
53
A
PSU
54
n
54
PSU
54
A
C
55
n
55
C
55
A
A
56
n
56
A
56
A
A
57
n
57
A
57
A
U
58
n
58
U
58
A
U
59
n
59
U
59
A
C
60
n
60
C
60
A
C
61
n
61
C
61
A
C
62
n
62
C
62
A
C
63
n
63
C
63
A
G
64
n
64
G
64
A
U
65
n
65
U
65
A
C
66
n
66
C
66
A
G
67
n
67
G
67
A
C
68
n
68
C
68
A
G
69
n
69
G
69
A
G
70
n
70
G
70
A
A
71
n
71
A
71
A
G
72
n
72
G
72
A
C
73
n
73
C
73
A
n
74
74
A
n
75
75
A
author_defined_assembly
1
monomeric
A
HOH
166
D
O
HOH
1_555
A
MG
77
C
MG
MG
1_555
A
HOH
167
D
O
HOH
1_555
179.8
A
HOH
166
D
O
HOH
1_555
A
MG
77
C
MG
MG
1_555
A
HOH
168
D
O
HOH
1_555
90.0
A
HOH
167
D
O
HOH
1_555
A
MG
77
C
MG
MG
1_555
A
HOH
168
D
O
HOH
1_555
90.1
A
HOH
166
D
O
HOH
1_555
A
MG
77
C
MG
MG
1_555
A
HOH
169
D
O
HOH
1_555
90.1
A
HOH
167
D
O
HOH
1_555
A
MG
77
C
MG
MG
1_555
A
HOH
169
D
O
HOH
1_555
89.8
A
HOH
168
D
O
HOH
1_555
A
MG
77
C
MG
MG
1_555
A
HOH
169
D
O
HOH
1_555
179.5
A
HOH
166
D
O
HOH
1_555
A
MG
77
C
MG
MG
1_555
A
HOH
170
D
O
HOH
1_555
90.0
A
HOH
167
D
O
HOH
1_555
A
MG
77
C
MG
MG
1_555
A
HOH
170
D
O
HOH
1_555
89.9
A
HOH
168
D
O
HOH
1_555
A
MG
77
C
MG
MG
1_555
A
HOH
170
D
O
HOH
1_555
90.1
A
HOH
169
D
O
HOH
1_555
A
MG
77
C
MG
MG
1_555
A
HOH
170
D
O
HOH
1_555
90.4
A
HOH
166
D
O
HOH
1_555
A
MG
77
C
MG
MG
1_555
A
HOH
171
D
O
HOH
1_555
90.1
A
HOH
167
D
O
HOH
1_555
A
MG
77
C
MG
MG
1_555
A
HOH
171
D
O
HOH
1_555
90.0
A
HOH
168
D
O
HOH
1_555
A
MG
77
C
MG
MG
1_555
A
HOH
171
D
O
HOH
1_555
89.7
A
HOH
169
D
O
HOH
1_555
A
MG
77
C
MG
MG
1_555
A
HOH
171
D
O
HOH
1_555
89.8
A
HOH
170
D
O
HOH
1_555
A
MG
77
C
MG
MG
1_555
A
HOH
171
D
O
HOH
1_555
179.8
A
PSU
13
PSEUDOURIDINE-5'-MONOPHOSPHATE
A
PSU
13
U
A
H2U
16
5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
A
H2U
16
U
A
H2U
19
5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
A
H2U
19
U
A
PSU
32
PSEUDOURIDINE-5'-MONOPHOSPHATE
A
PSU
32
U
A
1MG
37
1N-METHYLGUANOSINE-5'-MONOPHOSPHATE
A
1MG
37
G
A
5MC
48
5-METHYLCYTIDINE-5'-MONOPHOSPHATE
A
5MC
48
C
A
5MU
53
5-METHYLURIDINE 5'-MONOPHOSPHATE
A
5MU
53
U
A
PSU
54
PSEUDOURIDINE-5'-MONOPHOSPHATE
A
PSU
54
U
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
HOH
124
D
HOH
1
A
C
74
A
C
74
1
Y
1
A
A
75
A
A
75
1
Y
1
A
A
C3'
OP2
PSU
C
54
55
1.44
B
1
A
A
O3'
P
U
G
33
34
14.39
B
1
A
A
O3'
P
5MU
PSU
53
54
1.26
B
1
A
A
O3'
P
PSU
C
54
55
1.96
B
1
A
A
O3'
P
A
G
71
72
1.24
B
1
A
A
O3'
P
G
C
72
73
3.94
B
1
3.82
0.60
114.60
118.42
A
A
A
N3
C4
C5
U
U
U
1
1
1
N
1
-5.21
0.70
119.40
114.19
A
A
A
N3
C4
O4
U
U
U
1
1
1
N
1
-9.28
1.50
119.60
110.32
A
A
A
OP1
P
OP2
C
C
C
3
3
3
N
1
-7.43
1.10
112.00
104.57
A
A
A
N1
C1'
C2'
C
C
C
3
3
3
N
1
6.39
0.70
108.50
114.89
A
A
A
O4'
C1'
N1
C
C
C
3
3
3
N
1
-5.57
0.80
109.40
103.83
A
A
A
O5'
C5'
C4'
G
G
G
4
4
4
N
1
-7.78
1.20
119.70
111.92
A
A
A
C3'
O3'
P
G
G
U
4
4
5
Y
1
-4.45
0.60
127.00
122.55
A
A
A
C2
N3
C4
U
U
U
5
5
5
N
1
3.90
0.60
114.60
118.50
A
A
A
N3
C4
C5
U
U
U
5
5
5
N
1
4.49
0.70
108.50
112.99
A
A
A
O4'
C1'
N9
A
A
A
7
7
7
N
1
3.95
0.60
114.60
118.55
A
A
A
N3
C4
C5
U
U
U
8
8
8
N
1
-7.17
0.80
109.40
102.23
A
A
A
O5'
C5'
C4'
A
A
A
9
9
9
N
1
-3.22
0.50
129.30
126.08
A
A
A
N1
C2
N3
A
A
A
9
9
9
N
1
-11.55
0.80
109.40
97.85
A
A
A
O5'
C5'
C4'
G
G
G
10
10
10
N
1
6.05
0.70
108.50
114.55
A
A
A
O4'
C1'
N9
G
G
G
10
10
10
N
1
-9.44
0.80
109.40
99.96
A
A
A
O5'
C5'
C4'
U
U
U
11
11
11
N
1
-10.02
1.60
120.90
110.88
A
A
A
P
O5'
C5'
U
U
U
11
11
11
N
1
-3.81
0.60
127.00
123.19
A
A
A
C2
N3
C4
U
U
U
11
11
11
N
1
3.82
0.60
114.60
118.42
A
A
A
N3
C4
C5
U
U
U
11
11
11
N
1
-6.94
0.80
109.40
102.46
A
A
A
O5'
C5'
C4'
U
U
U
12
12
12
N
1
4.99
0.80
109.90
114.89
A
A
A
C1'
O4'
C4'
U
U
U
12
12
12
N
1
3.79
0.60
114.90
118.69
A
A
A
N1
C2
N3
U
U
U
12
12
12
N
1
-5.80
0.60
127.00
121.20
A
A
A
C2
N3
C4
U
U
U
12
12
12
N
1
4.34
0.60
114.60
118.94
A
A
A
N3
C4
C5
U
U
U
12
12
12
N
1
-4.34
0.60
125.90
121.56
A
A
A
C5
C4
O4
U
U
U
12
12
12
N
1
-3.15
0.50
117.70
114.55
A
A
A
C5
C6
N1
A
A
A
14
14
14
N
1
-10.09
1.50
119.60
109.51
A
A
A
OP1
P
OP2
A
A
A
15
15
15
N
1
3.73
0.60
118.60
122.33
A
A
A
C6
N1
C2
A
A
A
15
15
15
N
1
-3.80
0.50
129.30
125.50
A
A
A
N1
C2
N3
A
A
A
15
15
15
N
1
3.88
0.60
118.60
122.48
A
A
A
N1
C6
N6
A
A
A
15
15
15
N
1
-15.48
2.20
105.20
89.72
A
A
A
O3'
P
OP2
G
G
G
17
18
18
B
B
Y
1
8.91
1.10
110.50
119.41
A
A
A
O3'
P
OP1
G
G
G
17
18
18
B
B
Y
1
3.80
0.50
111.50
115.30
A
A
A
C5
C6
N1
G
G
G
18
18
18
A
A
A
N
1
3.35
0.50
111.50
114.85
A
A
A
C5
C6
N1
G
G
G
18
18
18
B
B
B
N
1
7.21
1.20
119.70
126.91
A
A
A
C3'
O3'
P
C
C
A
20
20
21
Y
1
-9.97
1.50
119.60
109.63
A
A
A
OP1
P
OP2
G
G
G
22
22
22
N
1
5.15
0.70
108.50
113.65
A
A
A
O4'
C1'
N9
A
A
A
23
23
23
N
1
5.06
0.70
108.50
113.56
A
A
A
O4'
C1'
N9
A
A
A
24
24
24
N
1
3.97
0.60
118.60
122.57
A
A
A
C6
N1
C2
A
A
A
24
24
24
N
1
-3.22
0.50
129.30
126.08
A
A
A
N1
C2
N3
A
A
A
24
24
24
N
1
-3.69
0.50
117.70
114.01
A
A
A
C5
C6
N1
A
A
A
24
24
24
N
1
-5.59
0.80
109.40
103.81
A
A
A
O5'
C5'
C4'
U
U
U
25
25
25
N
1
-3.71
0.60
127.00
123.29
A
A
A
C2
N3
C4
U
U
U
25
25
25
N
1
-5.20
0.80
109.40
104.20
A
A
A
O5'
C5'
C4'
G
G
G
26
26
26
N
1
3.36
0.50
111.50
114.86
A
A
A
C5
C6
N1
G
G
G
26
26
26
N
1
-7.83
1.20
119.70
111.87
A
A
A
C3'
O3'
P
G
G
G
26
26
27
Y
1
7.61
1.20
110.70
118.31
A
A
A
O5'
P
OP2
G
G
G
27
27
27
N
1
-5.25
0.80
109.40
104.15
A
A
A
O5'
C5'
C4'
G
G
G
28
28
28
N
1
4.42
0.70
108.50
112.92
A
A
A
O4'
C1'
N1
C
C
C
29
29
29
N
1
-2.52
0.40
121.90
119.38
A
A
A
N3
C4
C5
C
C
C
29
29
29
N
1
-9.14
1.50
119.60
110.46
A
A
A
OP1
P
OP2
G
G
G
30
30
30
N
1
5.50
0.80
109.90
115.40
A
A
A
C1'
O4'
C4'
G
G
G
30
30
30
N
1
7.61
0.70
108.50
116.11
A
A
A
O4'
C1'
N9
G
G
G
30
30
30
N
1
3.29
0.50
111.50
114.79
A
A
A
C5
C6
N1
G
G
G
30
30
30
N
1
-3.60
0.60
119.90
116.30
A
A
A
N1
C6
O6
G
G
G
30
30
30
N
1
4.27
0.70
108.50
112.77
A
A
A
O4'
C1'
N1
C
C
C
31
31
31
N
1
-4.16
0.60
127.00
122.84
A
A
A
C2
N3
C4
U
U
U
33
33
33
N
1
4.42
0.60
114.60
119.02
A
A
A
N3
C4
C5
U
U
U
33
33
33
N
1
3.37
0.50
111.50
114.87
A
A
A
C5
C6
N1
G
G
G
34
34
34
A
A
A
N
1
5.99
0.70
108.50
114.49
A
A
A
O4'
C1'
N1
U
U
U
35
35
35
A
A
A
N
1
-5.49
0.60
127.00
121.51
A
A
A
C2
N3
C4
U
U
U
35
35
35
A
A
A
N
1
-4.26
0.60
127.00
122.74
A
A
A
C2
N3
C4
U
U
U
35
35
35
B
B
B
N
1
4.86
0.60
114.60
119.46
A
A
A
N3
C4
C5
U
U
U
35
35
35
A
A
A
N
1
4.60
0.60
114.60
119.20
A
A
A
N3
C4
C5
U
U
U
35
35
35
B
B
B
N
1
7.30
1.20
119.70
127.00
A
A
A
C3'
O3'
P
U
U
C
35
35
36
B
B
B
Y
1
-9.18
1.50
119.60
110.42
A
A
A
OP1
P
OP2
C
C
C
36
36
36
A
A
A
N
1
-9.35
1.50
119.60
110.25
A
A
A
OP1
P
OP2
C
C
C
36
36
36
B
B
B
N
1
-2.45
0.40
121.90
119.45
A
A
A
N3
C4
C5
C
C
C
36
36
36
A
A
A
N
1
-11.07
1.20
119.70
108.63
A
A
A
C3'
O3'
P
C
C
1MG
36
36
37
A
A
Y
1
-8.14
0.80
109.40
101.26
A
A
A
O5'
C5'
C4'
C
C
C
38
38
38
N
1
4.93
0.70
108.50
113.43
A
A
A
O4'
C1'
N1
C
C
C
38
38
38
N
1
9.98
1.20
110.70
120.68
A
A
A
O5'
P
OP2
G
G
G
39
39
39
N
1
-10.29
0.80
109.40
99.11
A
A
A
O5'
C5'
C4'
U
U
U
40
40
40
N
1
-10.61
1.60
120.90
110.29
A
A
A
P
O5'
C5'
U
U
U
40
40
40
N
1
-5.13
0.60
127.00
121.87
A
A
A
C2
N3
C4
U
U
U
40
40
40
N
1
4.51
0.60
114.60
119.11
A
A
A
N3
C4
C5
U
U
U
40
40
40
N
1
-14.40
1.60
120.90
106.50
A
A
A
P
O5'
C5'
G
G
G
41
41
41
N
1
-12.46
1.50
119.60
107.14
A
A
A
OP1
P
OP2
C
C
C
42
42
42
N
1
-4.97
0.80
109.40
104.43
A
A
A
O5'
C5'
C4'
C
C
C
42
42
42
N
1
3.08
0.50
119.90
122.98
A
A
A
C2
N3
C4
C
C
C
42
42
42
N
1
-10.35
1.20
119.70
109.35
A
A
A
C3'
O3'
P
C
C
C
42
42
43
Y
1
8.74
1.20
110.70
119.44
A
A
A
O5'
P
OP2
C
C
C
43
43
43
N
1
-5.85
0.80
109.40
103.55
A
A
A
O5'
C5'
C4'
A
A
A
44
44
44
N
1
4.74
0.70
108.50
113.24
A
A
A
O4'
C1'
N9
A
A
A
44
44
44
N
1
-8.77
1.10
112.00
103.23
A
A
A
N9
C1'
C2'
G
G
G
45
45
45
N
1
10.28
0.70
108.50
118.78
A
A
A
O4'
C1'
N9
G
G
G
45
45
45
N
1
-6.87
0.80
109.40
102.53
A
A
A
O5'
C5'
C4'
A
A
A
46
46
46
N
1
-11.77
1.60
120.90
109.13
A
A
A
P
O5'
C5'
A
A
A
46
46
46
N
1
-3.22
0.50
129.30
126.08
A
A
A
N1
C2
N3
A
A
A
46
46
46
N
1
-9.46
1.50
119.60
110.14
A
A
A
OP1
P
OP2
U
U
U
47
47
47
N
1
-5.46
0.80
109.40
103.94
A
A
A
O5'
C5'
C4'
U
U
U
47
47
47
N
1
-4.54
0.60
127.00
122.46
A
A
A
C2
N3
C4
U
U
U
47
47
47
N
1
4.12
0.60
114.60
118.72
A
A
A
N3
C4
C5
U
U
U
47
47
47
N
1
-8.92
0.80
109.40
100.48
A
A
A
O5'
C5'
C4'
G
G
G
49
49
49
N
1
-7.25
1.10
112.00
104.75
A
A
A
N9
C1'
C2'
G
G
G
51
51
51
N
1
4.58
0.70
108.50
113.08
A
A
A
O4'
C1'
N9
G
G
G
51
51
51
N
1
3.48
0.50
111.50
114.98
A
A
A
C5
C6
N1
G
G
G
51
51
51
N
1
3.45
0.50
111.50
114.95
A
A
A
C5
C6
N1
G
G
G
52
52
52
N
1
-7.93
1.20
119.70
111.77
A
A
A
C3'
O3'
P
5MU
5MU
PSU
53
53
54
B
Y
1
19.44
1.10
110.50
129.94
A
A
A
O3'
P
OP2
5MU
PSU
PSU
53
54
54
B
B
Y
1
-16.24
2.20
105.20
88.96
A
A
A
O3'
P
OP1
5MU
PSU
PSU
53
54
54
B
B
Y
1
-9.67
1.20
119.70
110.03
A
A
A
C3'
O3'
P
PSU
PSU
C
54
54
55
A
A
Y
1
-9.49
1.50
119.60
110.11
A
A
A
OP1
P
OP2
A
A
A
56
56
56
N
1
-3.05
0.50
117.70
114.65
A
A
A
C5
C6
N1
A
A
A
56
56
56
N
1
-5.89
0.80
109.40
103.51
A
A
A
O5'
C5'
C4'
A
A
A
57
57
57
N
1
-3.52
0.50
129.30
125.78
A
A
A
N1
C2
N3
A
A
A
57
57
57
N
1
-5.03
0.60
127.00
121.97
A
A
A
C2
N3
C4
U
U
U
58
58
58
N
1
5.28
0.60
114.60
119.88
A
A
A
N3
C4
C5
U
U
U
58
58
58
N
1
7.22
1.20
110.70
117.92
A
A
A
O5'
P
OP2
U
U
U
59
59
59
N
1
-5.30
0.80
109.40
104.10
A
A
A
O5'
C5'
C4'
U
U
U
59
59
59
N
1
-4.51
0.60
127.00
122.49
A
A
A
C2
N3
C4
U
U
U
59
59
59
N
1
4.17
0.60
114.60
118.77
A
A
A
N3
C4
C5
U
U
U
59
59
59
N
1
-19.02
1.20
119.70
100.68
A
A
A
C3'
O3'
P
U
U
C
59
59
60
Y
1
-6.11
0.80
109.40
103.29
A
A
A
O5'
C5'
C4'
C
C
C
63
63
63
N
1
5.49
0.70
108.50
113.99
A
A
A
O4'
C1'
N1
C
C
C
63
63
63
N
1
-2.77
0.40
121.90
119.13
A
A
A
N3
C4
C5
C
C
C
63
63
63
N
1
-10.47
1.20
119.70
109.23
A
A
A
C3'
O3'
P
C
C
G
63
63
64
Y
1
-7.24
0.80
109.40
102.16
A
A
A
O5'
C5'
C4'
U
U
U
65
65
65
N
1
3.86
0.60
114.90
118.76
A
A
A
N1
C2
N3
U
U
U
65
65
65
N
1
-5.11
0.60
127.00
121.89
A
A
A
C2
N3
C4
U
U
U
65
65
65
N
1
4.36
0.60
114.60
118.96
A
A
A
N3
C4
C5
U
U
U
65
65
65
N
1
-5.72
0.60
125.90
120.18
A
A
A
C5
C4
O4
U
U
U
65
65
65
N
1
-9.81
1.50
119.60
109.79
A
A
A
OP1
P
OP2
C
C
C
66
66
66
N
1
-8.73
1.20
119.70
110.97
A
A
A
C3'
O3'
P
C
C
G
68
68
69
Y
1
-12.06
1.50
119.60
107.54
A
A
A
OP1
P
OP2
G
G
G
69
69
69
N
1
8.20
1.20
110.70
118.90
A
A
A
O5'
P
OP2
G
G
G
69
69
69
N
1
-8.11
1.10
112.00
103.89
A
A
A
N9
C1'
C2'
G
G
G
69
69
69
N
1
4.22
0.70
108.50
112.72
A
A
A
O4'
C1'
N9
G
G
G
69
69
69
N
1
-3.69
0.60
125.10
121.41
A
A
A
C6
N1
C2
G
G
G
69
69
69
N
1
3.26
0.50
111.50
114.76
A
A
A
C5
C6
N1
G
G
G
69
69
69
N
1
-5.64
0.80
109.40
103.76
A
A
A
O5'
C5'
C4'
G
G
G
70
70
70
N
1
3.23
0.50
111.50
114.73
A
A
A
C5
C6
N1
G
G
G
70
70
70
N
1
-8.13
1.20
119.70
111.57
A
A
A
C3'
O3'
P
G
G
A
70
70
71
Y
1
4.94
0.60
118.60
123.54
A
A
A
C6
N1
C2
A
A
A
71
71
71
N
1
-3.10
0.50
129.30
126.20
A
A
A
N1
C2
N3
A
A
A
71
71
71
N
1
-3.80
0.50
117.70
113.90
A
A
A
C5
C6
N1
A
A
A
71
71
71
N
1
14.80
1.20
119.70
134.50
A
A
A
C3'
O3'
P
A
A
G
71
71
72
B
Y
1
-26.74
1.90
104.00
77.26
A
A
A
O3'
P
O5'
A
G
G
71
72
72
B
B
Y
1
20.07
1.10
110.50
130.57
A
A
A
O3'
P
OP1
A
G
G
71
72
72
B
B
Y
1
3.43
0.50
111.50
114.93
A
A
A
C5
C6
N1
G
G
G
72
72
72
A
A
A
N
1
-2.61
0.40
121.90
119.29
A
A
A
N3
C4
C5
C
C
C
73
73
73
N
1
A
A
O3'
P
G
G
17
18
-0.170
0.012
1.607
1.437
B
Y
1
A
A
O3'
P
5MU
PSU
53
54
-0.347
0.012
1.607
1.260
B
Y
1
A
A
O3'
P
A
G
71
72
-0.370
0.012
1.607
1.237
B
Y
1
A
A
O3'
OP1
U
G
33
34
1.77
B
1_555
3_554
1
A
A
N6
N3
A
C
56
73
2.17
1_555
5_455
0.193
3.000
10.000
4335
1
2.000
3.000
10.000
94
1669
15
1560
0
0.012
0.022
refinement
NUCLSQ
RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS
1
N
N
2
N
N
3
N
N
4
N
N
covale
1.609
both
A
U
12
A
O3'
U
12
1_555
A
PSU
13
A
P
PSU
13
1_555
covale
1.611
both
A
PSU
13
A
O3'
PSU
13
1_555
A
A
14
A
P
A
14
1_555
covale
1.602
both
A
A
15
A
O3'
A
15
1_555
A
H2U
16
A
P
H2U
16
1_555
covale
1.612
both
A
H2U
16
A
O3'
H2U
16
1_555
A
G
17
A
P
G
17
1_555
covale
1.608
both
A
A
G
18
A
O3'
G
18
1_555
A
H2U
19
A
P
H2U
19
1_555
covale
1.602
both
A
H2U
19
A
O3'
H2U
19
1_555
A
C
20
A
P
C
20
1_555
covale
1.610
both
A
C
31
A
O3'
C
31
1_555
A
PSU
32
A
P
PSU
32
1_555
covale
1.638
both
A
PSU
32
A
O3'
PSU
32
1_555
A
U
33
A
P
U
33
1_555
covale
1.637
both
A
A
C
36
A
O3'
C
36
1_555
A
1MG
37
A
P
1MG
37
1_555
covale
1.613
both
A
1MG
37
A
O3'
1MG
37
1_555
A
C
38
A
P
C
38
1_555
covale
1.613
both
A
U
47
A
O3'
U
47
1_555
A
5MC
48
A
P
5MC
48
1_555
covale
1.603
both
A
5MC
48
A
O3'
5MC
48
1_555
A
G
49
A
P
G
49
1_555
covale
1.626
both
A
G
52
A
O3'
G
52
1_555
A
5MU
53
A
P
5MU
53
1_555
covale
1.623
both
A
A
5MU
53
A
O3'
5MU
53
1_555
A
PSU
54
A
P
PSU
54
1_555
covale
1.260
both
B
A
5MU
53
A
O3'
5MU
53
1_555
A
PSU
54
A
P
PSU
54
1_555
covale
1.623
both
A
A
PSU
54
A
O3'
PSU
54
1_555
A
C
55
A
P
C
55
1_555
covale
1.955
both
B
A
PSU
54
A
O3'
PSU
54
1_555
A
C
55
A
P
C
55
1_555
metalc
1.974
A
MG
77
C
MG
MG
1_555
A
HOH
166
D
O
HOH
1_555
metalc
1.978
A
MG
77
C
MG
MG
1_555
A
HOH
167
D
O
HOH
1_555
metalc
1.978
A
MG
77
C
MG
MG
1_555
A
HOH
168
D
O
HOH
1_555
metalc
1.987
A
MG
77
C
MG
MG
1_555
A
HOH
169
D
O
HOH
1_555
metalc
1.989
A
MG
77
C
MG
MG
1_555
A
HOH
170
D
O
HOH
1_555
metalc
1.985
A
MG
77
C
MG
MG
1_555
A
HOH
171
D
O
HOH
1_555
hydrog
WATSON-CRICK
A
U
1
A
N3
U
1
1_555
A
A
71
A
N1
A
71
1_555
hydrog
WATSON-CRICK
A
U
1
A
O4
U
1
1_555
A
A
71
A
N6
A
71
1_555
hydrog
WATSON-CRICK
A
C
2
A
N3
C
2
1_555
A
G
70
A
N1
G
70
1_555
hydrog
WATSON-CRICK
A
C
2
A
N4
C
2
1_555
A
G
70
A
O6
G
70
1_555
hydrog
WATSON-CRICK
A
C
2
A
O2
C
2
1_555
A
G
70
A
N2
G
70
1_555
hydrog
WATSON-CRICK
A
C
3
A
N3
C
3
1_555
A
G
69
A
N1
G
69
1_555
hydrog
WATSON-CRICK
A
C
3
A
N4
C
3
1_555
A
G
69
A
O6
G
69
1_555
hydrog
WATSON-CRICK
A
C
3
A
O2
C
3
1_555
A
G
69
A
N2
G
69
1_555
hydrog
WATSON-CRICK
A
G
4
A
N1
G
4
1_555
A
C
68
A
N3
C
68
1_555
hydrog
WATSON-CRICK
A
G
4
A
N2
G
4
1_555
A
C
68
A
O2
C
68
1_555
hydrog
WATSON-CRICK
A
G
4
A
O6
G
4
1_555
A
C
68
A
N4
C
68
1_555
hydrog
TYPE_28_PAIR
A
U
5
A
N3
U
5
1_555
A
G
67
A
O6
G
67
1_555
hydrog
TYPE_28_PAIR
A
U
5
A
O2
U
5
1_555
A
G
67
A
N1
G
67
1_555
hydrog
WATSON-CRICK
A
G
6
A
N1
G
6
1_555
A
C
66
A
N3
C
66
1_555
hydrog
WATSON-CRICK
A
G
6
A
N2
G
6
1_555
A
C
66
A
O2
C
66
1_555
hydrog
WATSON-CRICK
A
G
6
A
O6
G
6
1_555
A
C
66
A
N4
C
66
1_555
hydrog
A-G MISPAIR
A
A
7
A
N6
A
7
1_555
A
G
64
A
O6
G
64
1_555
hydrog
WATSON-CRICK
A
A
7
A
N1
A
7
1_555
A
U
65
A
N3
U
65
1_555
hydrog
WATSON-CRICK
A
A
7
A
N6
A
7
1_555
A
U
65
A
O4
U
65
1_555
hydrog
REVERSED HOOGSTEEN
A
U
8
A
N3
U
8
1_555
A
A
14
A
N7
A
14
1_555
hydrog
REVERSED HOOGSTEEN
A
U
8
A
O2
U
8
1_555
A
A
14
A
N6
A
14
1_555
hydrog
TYPE_2_PAIR
A
A
9
A
N6
A
9
1_555
A
A
23
A
N7
A
23
1_555
hydrog
TYPE_2_PAIR
A
A
9
A
N7
A
9
1_555
A
A
23
A
N6
A
23
1_555
hydrog
TYPE_28_PAIR
A
G
10
A
N1
G
10
1_555
A
U
25
A
O2
U
25
1_555
hydrog
TYPE_28_PAIR
A
G
10
A
O6
G
10
1_555
A
U
25
A
N3
U
25
1_555
hydrog
G-G MISPAIR
A
G
10
A
O6
G
10
1_555
A
G
45
A
N2
G
45
1_555
hydrog
WATSON-CRICK
A
U
11
A
N3
U
11
1_555
A
A
24
A
N1
A
24
1_555
hydrog
WATSON-CRICK
A
U
11
A
O4
U
11
1_555
A
A
24
A
N6
A
24
1_555
hydrog
WATSON-CRICK
A
U
12
A
N3
U
12
1_555
A
A
23
A
N1
A
23
1_555
hydrog
WATSON-CRICK
A
U
12
A
O4
U
12
1_555
A
A
23
A
N6
A
23
1_555
hydrog
TYPE_27_PAIR
A
PSU
13
A
N3
PSU
13
1_555
A
G
22
A
O6
G
22
1_555
hydrog
TYPE_27_PAIR
A
PSU
13
A
O4
PSU
13
1_555
A
G
22
A
N1
G
22
1_555
hydrog
A-A MISPAIR
A
A
14
A
N6
A
14
1_555
A
A
21
A
N3
A
21
1_555
hydrog
REVERSED WATSON-CRICK
A
A
15
A
N1
A
15
1_555
A
U
47
A
N3
U
47
1_555
hydrog
REVERSED WATSON-CRICK
A
A
15
A
N6
A
15
1_555
A
U
47
A
O2
U
47
1_555
hydrog
G-PSU MISPAIR
A
A
G
17
A
N1
G
17
1_555
A
PSU
54
A
O4
PSU
54
1_555
hydrog
WATSON-CRICK
A
A
G
18
A
N1
G
18
1_555
A
C
55
A
N3
C
55
1_555
hydrog
WATSON-CRICK
A
A
G
18
A
N2
G
18
1_555
A
C
55
A
O2
C
55
1_555
hydrog
WATSON-CRICK
A
A
G
18
A
O6
G
18
1_555
A
C
55
A
N4
C
55
1_555
hydrog
G-A MISPAIR
A
G
22
A
N7
G
22
1_555
A
A
46
A
N6
A
46
1_555
hydrog
TYPE_8_PAIR
A
G
26
A
N1
G
26
1_555
A
A
44
A
N1
A
44
1_555
hydrog
TYPE_8_PAIR
A
G
26
A
O6
G
26
1_555
A
A
44
A
N6
A
44
1_555
hydrog
WATSON-CRICK
A
G
27
A
N1
G
27
1_555
A
C
43
A
N3
C
43
1_555
hydrog
WATSON-CRICK
A
G
27
A
N2
G
27
1_555
A
C
43
A
O2
C
43
1_555
hydrog
WATSON-CRICK
A
G
27
A
O6
G
27
1_555
A
C
43
A
N4
C
43
1_555
hydrog
WATSON-CRICK
A
G
28
A
N1
G
28
1_555
A
C
42
A
N3
C
42
1_555
hydrog
WATSON-CRICK
A
G
28
A
N2
G
28
1_555
A
C
42
A
O2
C
42
1_555
hydrog
WATSON-CRICK
A
G
28
A
O6
G
28
1_555
A
C
42
A
N4
C
42
1_555
hydrog
WATSON-CRICK
A
C
29
A
N3
C
29
1_555
A
G
41
A
N1
G
41
1_555
hydrog
WATSON-CRICK
A
C
29
A
N4
C
29
1_555
A
G
41
A
O6
G
41
1_555
hydrog
WATSON-CRICK
A
C
29
A
O2
C
29
1_555
A
G
41
A
N2
G
41
1_555
hydrog
TYPE_28_PAIR
A
G
30
A
N1
G
30
1_555
A
U
40
A
O2
U
40
1_555
hydrog
TYPE_28_PAIR
A
G
30
A
O6
G
30
1_555
A
U
40
A
N3
U
40
1_555
hydrog
WATSON-CRICK
A
C
31
A
N3
C
31
1_555
A
G
39
A
N1
G
39
1_555
hydrog
WATSON-CRICK
A
C
31
A
N4
C
31
1_555
A
G
39
A
O6
G
39
1_555
hydrog
WATSON-CRICK
A
C
31
A
O2
C
31
1_555
A
G
39
A
N2
G
39
1_555
hydrog
WATSON-CRICK
A
5MC
48
A
N3
5MC
48
1_555
A
G
64
A
N1
G
64
1_555
hydrog
WATSON-CRICK
A
5MC
48
A
N4
5MC
48
1_555
A
G
64
A
O6
G
64
1_555
hydrog
WATSON-CRICK
A
5MC
48
A
O2
5MC
48
1_555
A
G
64
A
N2
G
64
1_555
hydrog
WATSON-CRICK
A
G
49
A
N1
G
49
1_555
A
C
63
A
N3
C
63
1_555
hydrog
WATSON-CRICK
A
G
49
A
N2
G
49
1_555
A
C
63
A
O2
C
63
1_555
hydrog
WATSON-CRICK
A
G
49
A
O6
G
49
1_555
A
C
63
A
N4
C
63
1_555
hydrog
WATSON-CRICK
A
G
50
A
N1
G
50
1_555
A
C
62
A
N3
C
62
1_555
hydrog
WATSON-CRICK
A
G
50
A
N2
G
50
1_555
A
C
62
A
O2
C
62
1_555
hydrog
WATSON-CRICK
A
G
50
A
O6
G
50
1_555
A
C
62
A
N4
C
62
1_555
hydrog
WATSON-CRICK
A
G
51
A
N1
G
51
1_555
A
C
61
A
N3
C
61
1_555
hydrog
WATSON-CRICK
A
G
51
A
N2
G
51
1_555
A
C
61
A
O2
C
61
1_555
hydrog
WATSON-CRICK
A
G
51
A
O6
G
51
1_555
A
C
61
A
N4
C
61
1_555
hydrog
WATSON-CRICK
A
G
52
A
N1
G
52
1_555
A
C
60
A
N3
C
60
1_555
hydrog
WATSON-CRICK
A
G
52
A
N2
G
52
1_555
A
C
60
A
O2
C
60
1_555
hydrog
WATSON-CRICK
A
G
52
A
O6
G
52
1_555
A
C
60
A
N4
C
60
1_555
hydrog
REVERSED HOOGSTEEN
A
5MU
53
A
N3
5MU
53
1_555
A
A
57
A
N7
A
57
1_555
hydrog
REVERSED HOOGSTEEN
A
5MU
53
A
O2
5MU
53
1_555
A
A
57
A
N6
A
57
1_555
T-RNA
T-RNA, SINGLE STRAND, LOOPS
2TRA
PDB
1
2TRA
1
75
2TRA
1
75
2TRA
A
1
1
75
BINDING SITE FOR RESIDUE SPM A 76
A
SPM
76
Software
7
BINDING SITE FOR RESIDUE MG A 77
A
MG
77
Software
7
A
U
5
A
U
5
7
1_555
A
G
6
A
G
6
7
1_555
A
H2U
19
A
H2U
19
7
5_545
A
G
67
A
G
67
7
1_555
A
HOH
147
D
HOH
7
1_555
A
HOH
150
D
HOH
7
1_555
A
HOH
161
D
HOH
7
1_555
A
C
31
A
C
31
7
1_555
A
HOH
166
D
HOH
7
1_555
A
HOH
167
D
HOH
7
1_555
A
HOH
168
D
HOH
7
1_555
A
HOH
169
D
HOH
7
1_555
A
HOH
170
D
HOH
7
1_555
A
HOH
171
D
HOH
7
1_555
20
C 2 2 21