0.010558
0.000000
0.000000
0.000000
0.009597
0.000000
0.000000
0.000000
0.018967
0.00000
0.00000
0.00000
Irimia, A.
Egli, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
94.719
104.197
52.723
C10 H14 N5 O8 P
363.221
n
8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE
8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE
DNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H16 N5 O13 P3
507.181
2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
non-polymer
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
N
13
N
N
N
14
N
C
N
15
N
N
N
16
N
C
N
17
N
C
N
18
N
O
N
19
N
N
N
20
N
C
N
21
N
N
N
22
N
N
N
23
N
C
N
24
N
O
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
N
N
40
S
C
N
41
N
C
N
42
N
O
N
43
N
C
N
44
N
O
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
N
N
53
S
C
N
54
N
C
N
55
N
O
N
56
N
C
N
57
N
C
N
58
N
C
N
59
N
N
N
60
N
C
N
61
N
N
N
62
N
N
N
63
N
O
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
N
N
80
S
C
N
81
N
C
N
82
N
O
N
83
N
C
N
84
N
C
N
85
N
O
N
86
N
N
N
87
N
O
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
N
N
97
S
C
N
98
N
C
N
99
N
O
N
100
N
C
N
101
N
C
N
102
N
O
N
103
N
O
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
CA
N
113
N
N
N
114
R
C
N
115
N
C
N
116
N
O
N
117
N
C
N
118
N
S
N
119
N
O
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
O
N
128
N
P
N
129
N
O
N
130
N
O
N
131
N
O
N
132
N
C
N
133
R
C
N
134
N
O
N
135
S
C
N
136
N
O
N
137
N
C
N
138
R
C
Y
139
N
N
Y
140
N
C
Y
141
N
N
Y
142
N
C
Y
143
N
C
N
144
N
N
Y
145
N
N
Y
146
N
C
Y
147
N
N
Y
148
N
C
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
O
N
164
N
P
N
165
N
O
N
166
N
O
N
167
N
O
N
168
N
C
N
169
R
C
N
170
N
O
N
171
S
C
N
172
N
O
N
173
N
C
N
174
R
C
N
175
N
N
N
176
N
C
N
177
N
O
N
178
N
N
N
179
N
C
N
180
N
N
N
181
N
C
N
182
N
C
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
O
N
198
N
P
N
199
N
O
N
200
N
O
N
201
N
O
N
202
N
C
N
203
R
C
N
204
N
O
N
205
S
C
N
206
N
O
N
207
N
C
N
208
R
C
Y
209
N
N
Y
210
N
C
Y
211
N
N
Y
212
N
C
N
213
N
C
N
214
N
O
N
215
N
N
N
216
N
C
N
217
N
N
N
218
N
N
Y
219
N
C
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
P
N
235
N
O
N
236
N
O
N
237
N
O
N
238
N
O
N
239
S
P
N
240
N
O
N
241
N
O
N
242
N
O
N
243
R
P
N
244
N
O
N
245
N
O
N
246
N
O
N
247
N
C
N
248
R
C
N
249
N
O
N
250
S
C
N
251
N
O
N
252
N
C
N
253
R
C
Y
254
N
N
Y
255
N
C
Y
256
N
N
Y
257
N
C
N
258
N
C
N
259
N
O
N
260
N
N
N
261
N
C
N
262
N
N
N
263
N
N
Y
264
N
C
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
O
N
282
N
P
N
283
N
O
N
284
N
O
N
285
N
O
N
286
N
C
N
287
R
C
N
288
N
O
N
289
S
C
N
290
N
O
N
291
N
C
N
292
R
C
N
293
N
N
N
294
N
C
N
295
N
O
N
296
N
N
N
297
N
C
N
298
N
O
N
299
N
C
N
300
N
C
N
301
N
C
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
N
N
318
S
C
N
319
N
C
N
320
N
O
N
321
N
C
N
322
N
C
N
323
N
C
N
324
N
O
N
325
N
N
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
N
N
338
S
C
N
339
N
C
N
340
N
O
N
341
N
C
N
342
N
C
N
343
N
C
N
344
N
O
N
345
N
O
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
N
N
357
N
C
N
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
N
N
367
S
C
N
368
N
C
N
369
N
O
N
370
N
C
Y
371
N
C
Y
372
N
N
Y
373
N
C
Y
374
N
C
Y
375
N
N
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
O
N
388
N
H
N
389
N
H
N
390
N
N
N
391
S
C
N
392
N
C
N
393
N
O
N
394
S
C
N
395
N
C
N
396
N
C
N
397
N
C
N
398
N
O
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
N
N
413
S
C
N
414
N
C
N
415
N
O
N
416
N
C
N
417
N
C
N
418
N
C
N
419
N
C
N
420
N
O
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
N
N
435
S
C
N
436
N
C
N
437
N
O
N
438
N
C
N
439
N
C
N
440
N
C
N
441
N
C
N
442
N
N
N
443
N
O
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
N
N
460
S
C
N
461
N
C
N
462
N
O
N
463
N
C
N
464
N
C
N
465
N
S
N
466
N
C
N
467
N
O
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
N
N
480
S
C
N
481
N
C
N
482
N
O
N
483
N
C
Y
484
N
C
Y
485
N
C
Y
486
N
C
Y
487
N
C
Y
488
N
C
Y
489
N
C
N
490
N
O
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
N
N
503
S
C
N
504
N
C
N
505
N
O
N
506
N
C
N
507
N
C
N
508
N
C
N
509
N
O
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
N
N
520
S
C
N
521
N
C
N
522
N
O
N
523
N
C
N
524
N
O
N
525
N
O
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
N
N
534
S
C
N
535
N
C
N
536
N
O
N
537
R
C
N
538
N
O
N
539
N
C
N
540
N
O
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
N
N
551
S
C
N
552
N
C
N
553
N
O
N
554
N
C
Y
555
N
C
Y
556
N
C
Y
557
N
C
Y
558
N
C
Y
559
N
C
Y
560
N
C
N
561
N
O
N
562
N
O
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
H
N
568
N
H
N
569
N
H
N
570
N
H
N
571
N
H
N
572
N
H
N
573
N
H
N
574
N
N
N
575
S
C
N
576
N
C
N
577
N
O
N
578
N
C
N
579
N
C
N
580
N
C
N
581
N
O
N
582
N
H
N
583
N
H
N
584
N
H
N
585
N
H
N
586
N
H
N
587
N
H
N
588
N
H
N
589
N
H
N
590
N
H
N
591
N
H
N
592
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
doub
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
doub
N
32
N
doub
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
doub
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
doub
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
doub
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
Y
146
N
sing
Y
147
N
sing
Y
148
N
doub
N
149
N
sing
Y
150
N
sing
Y
151
N
sing
Y
152
N
doub
N
153
N
sing
Y
154
N
doub
N
155
N
sing
N
156
N
sing
Y
157
N
sing
Y
158
N
doub
N
159
N
sing
Y
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
doub
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
Y
219
N
sing
Y
220
N
sing
Y
221
N
doub
N
222
N
sing
Y
223
N
sing
N
224
N
sing
Y
225
N
doub
N
226
N
doub
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
doub
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
doub
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
doub
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
Y
268
N
sing
Y
269
N
sing
N
270
N
sing
Y
271
N
doub
Y
272
N
sing
N
273
N
sing
Y
274
N
doub
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
doub
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
Y
378
N
sing
Y
379
N
doub
Y
380
N
doub
N
381
N
sing
Y
382
N
sing
N
383
N
sing
Y
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
doub
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
doub
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
doub
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
doub
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
doub
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
Y
486
N
doub
Y
487
N
sing
Y
488
N
sing
N
489
N
sing
Y
490
N
doub
N
491
N
sing
Y
492
N
doub
N
493
N
sing
Y
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
doub
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
doub
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
doub
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
doub
N
551
N
sing
N
552
N
sing
N
553
N
sing
N
554
N
sing
Y
555
N
doub
Y
556
N
sing
Y
557
N
sing
N
558
N
sing
Y
559
N
doub
N
560
N
sing
Y
561
N
doub
N
562
N
sing
Y
563
N
sing
N
564
N
sing
N
565
N
sing
N
566
N
sing
N
567
N
sing
N
568
N
sing
N
569
N
sing
N
570
N
sing
N
571
N
sing
N
572
N
sing
N
573
N
sing
N
574
N
doub
N
575
N
sing
N
576
N
sing
N
577
N
sing
N
578
N
sing
N
579
N
sing
N
580
N
sing
N
581
N
sing
N
582
N
sing
N
583
N
sing
N
584
N
sing
N
585
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
282
19831
10.1074/JBC.M702290200
17468100
Hydrogen Bonding of 7,8-Dihydro-8-Oxodeoxyguanosine with a Charged Residue in the Little Finger Domain Determines Miscoding Events in Sulfolobus Solfataricus DNA Polymerase Dpo4.
2007
10.2210/pdb2uvr/pdb
pdb_00002uvr
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
110.0
1
CCD
2006-08-08
ADSC CCD
SINGLE WAVELENGTH
M
x-ray
1
1.00
1.0
17-ID
APS
1.00
SYNCHROTRON
APS BEAMLINE 17-ID
R332A MUTANT OF DPO4
41000.637
DNA POLYMERASE IV
2.7.7.7
YES
1
man
polymer
4385.852
5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*C)-3'
1
syn
polymer
T C A C 8OG G A A T C C T T C C C C C
5388.480
5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3'
1
syn
polymer
507.181
2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
1
syn
non-polymer
40.078
CALCIUM ION
3
syn
non-polymer
18.015
water
71
nat
water
POL IV
14-MER PRIMER
18-MER TEMPLATE
no
no
HHHHHHMIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYL
PMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIA
ADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYN
EPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSE
SVKLLQKILEEDERKIRAIGVRFSKFIEAIGLDKFFDT
HHHHHHMIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYL
PMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIA
ADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYN
EPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSE
SVKLLQKILEEDERKIRAIGVRFSKFIEAIGLDKFFDT
A
polypeptide(L)
no
no
(DG)(DG)(DG)(DG)(DG)(DA)(DA)(DG)(DG)(DA)(DT)(DT)(DC)(DC)
GGGGGAAGGATTCC
P
polydeoxyribonucleotide
no
yes
(DT)(DC)(DA)(DC)(8OG)(DG)(DA)(DA)(DT)(DC)(DC)(DT)(DT)(DC)(DC)(DC)(DC)(DC)
TCACGGAATCCTTCCCCC
T
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
n
n
n
n
n
n
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n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
n
n
n
n
n
n
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n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
P2
sample
GENE DPO4
273057
SULFOLOBUS SOLFATARICUS
469008
ESCHERICHIA COLI
BL21(DE3)
PLASMID
PET22B/DPO4-NHIS
1
2.54
55.5
THE MODEL POSITION WAS OPTIMIZED BY SEVERAL ROUNDS OF RIGID BODY REFINEMENT.
7.50
8% PEG 3350, 10 MM TRIS-HCL PH 7.5, 50 MM CA(CH3CO2)2, 50MM NACL, 3.5% GLYCEROL
-4.040
1
19
P
1
T
18
2.583
P_DG1:DC18_T
1
-1.226
-0.309
-0.064
-0.191
-2.433
1
19
P
2
T
17
-3.557
P_DG2:DC17_T
2
-1.227
0.145
-0.316
-0.241
-2.179
1
19
P
3
T
16
-8.427
P_DG3:DC16_T
3
-3.247
0.429
-0.168
-0.135
7.941
1
19
P
4
T
15
4.654
P_DG4:DC15_T
4
-4.094
-0.407
-0.181
-0.309
10.120
1
19
P
5
T
14
1.109
P_DG5:DC14_T
5
-0.121
0.486
-0.105
-0.368
7.335
1
20
P
6
T
13
1.521
P_DA6:DT13_T
6
-10.424
-0.169
0.054
-0.359
1.534
1
20
P
7
T
12
-4.082
P_DA7:DT12_T
7
-3.944
0.105
-0.107
-0.210
5.896
1
19
P
8
T
11
-4.016
P_DG8:DC11_T
8
-5.512
-0.567
0.123
-0.330
1.672
1
19
P
9
T
10
-3.214
P_DG9:DC10_T
9
-9.269
-0.405
0.077
-0.232
-9.871
1
20
P
10
T
9
2.730
P_DA10:DT9_T
10
-10.909
0.480
-0.061
-0.122
2.701
1
20
P
11
T
8
0.632
P_DT11:DA8_T
11
-7.808
0.258
-0.695
-0.235
4.015
1
20
P
12
T
7
-6.556
P_DT12:DA7_T
12
3.346
-0.508
-0.395
-0.260
10.973
1
19
P
13
T
6
4.162
P_DC13:DG6_T
13
-0.423
0.155
-0.295
-0.132
-5.224
1
19
P
14
T
5
9.749
P_DC14:8OG5_T
14
-9.580
-0.078
0.012
-0.226
3.344
34.413
P
P
1
2
9.653
T
T
18
17
3.351
5.684
0.575
0.087
PP_DG1DG2:DC17DC18_TT
1
1.592
-2.703
33.918
-0.767
-0.716
3.476
32.583
P
P
2
3
8.732
T
T
17
16
3.392
4.869
-1.540
-0.279
PP_DG2DG3:DC16DC17_TT
2
-4.029
7.224
31.980
-1.397
2.000
2.610
28.474
P
P
3
4
16.068
T
T
16
15
3.048
7.802
0.969
-0.993
PP_DG3DG4:DC15DC16_TT
3
-1.633
3.364
27.358
-3.596
-2.299
3.195
35.302
P
P
4
5
13.422
T
T
15
14
3.331
8.072
0.008
-0.239
PP_DG4DG5:DC14DC15_TT
4
0.138
-0.229
34.395
-1.603
0.007
3.342
31.018
P
P
5
6
4.980
T
T
14
13
3.358
2.660
-0.073
-0.060
PP_DG5DA6:DT13DC14_TT
5
-0.254
0.475
30.906
-0.637
0.087
3.076
33.828
P
P
6
7
17.635
T
T
13
12
3.341
10.109
-0.677
-0.510
PP_DA6DA7:DT12DT13_TT
6
-1.661
2.898
32.282
-2.517
0.893
3.234
32.914
P
P
7
8
-0.696
T
T
12
11
3.236
-0.394
0.023
-0.097
PP_DA7DG8:DC11DT12_TT
7
-1.298
2.291
32.887
-0.104
-0.259
3.312
31.814
P
P
8
9
6.433
T
T
11
10
3.449
3.519
0.424
-1.101
PP_DG8DG9:DC10DC11_TT
8
0.189
-0.345
31.623
-2.675
-0.737
3.649
42.608
P
P
9
10
-3.812
T
T
10
9
3.668
-2.768
-0.229
0.040
PP_DG9DA10:DT9DC10_TT
9
1.376
-1.895
42.501
0.368
0.471
2.876
30.020
P
P
10
11
8.551
T
T
9
8
3.043
4.391
0.007
-0.619
PP_DA10DT11:DA8DT9_TT
10
5.414
-10.545
29.217
-2.023
1.008
3.234
30.395
P
P
11
12
8.457
T
T
8
7
3.331
4.417
0.483
-0.259
PP_DT11DT12:DA7DA8_TT
11
-1.446
2.768
30.045
-1.388
-1.214
2.852
27.846
P
P
12
13
18.829
T
T
7
6
3.319
8.907
0.687
-0.894
PP_DT12DC13:DG6DA7_TT
12
-0.727
1.537
26.400
-3.925
-1.596
3.492
31.012
P
P
13
14
12.591
T
T
6
5
3.661
6.681
-0.093
-0.421
PP_DC13DC14:8OG5DG6_TT
13
-0.626
1.181
30.294
-2.211
0.040
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_conn_type
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2007-05-08
1
1
2011-05-08
1
2
2011-07-13
1
3
2023-12-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
CRYSTAL STRUCTURE OF A Y-FAMILY DNA POLYMERASE IN A TERNARYCOMPLEX WITH DNA SUBSTRATES AND AN INCOMING NUCLEOTIDE
CRYSTAL STRUCTURE OF A Y-FAMILY DNA POLYMERASE IN A TERNARYCOMPLEX WITH DNA SUBSTRATES AND AN INCOMING NUCLEOTIDE
Y-FAMILY DNA POLYMERASE DPO4 IN COMPLEX WITH DNA CONTAININGABASIC LESION
Y-FAMILY DNA POLYMERASE DPO4 IN COMPLEX WITH DNA CONTAININGABASIC LESION
REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION
REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION
CRYSTAL STRUCTURE OF A BENZO[A]PYRENE DIOL EPOXIDE ADDUCTIN A TERNARY COMPLEX WITH A DNA POLYMERASE
SNAPSHOTS OF REPLICATION THROUGH AN ABASIC LESION:STRUCTURAL BASIS FOR BASE SUBSTITUTION AND FRAMESHIFT
SNAPSHOTS OF REPLICATION THROUGH AN ABASIC LESION:STRUCTURAL BASIS FOR BASE SUBSTITUTION AND FRAMESHIFT
SNAPSHOTS OF REPLICATION THROUGH AN ABASIC LESION:STRUCTURAL BASIS FOR BASE SUBSTITUTION AND FRAMESHIFT
DPO4 WITH GT MISMATCH
DPO WITH AT MATCHED
FIDELITY OF DPO4: EFFECT OF METAL IONS, NUCLEOTIDESELECTION AND PYROPHOSPHOROLYSIS
FIDELITY OF DPO4: EFFECT OF METAL IONS, NUCLEOTIDESELECTION AND PYROPHOSPHOROLYSIS
FIDELITY OF DPO4: EFFECT OF METAL IONS, NUCLEOTIDESELECTION AND PYROPHOSPHOROLYSIS
OXOG-MODIFIED INSERTION TERNARY COMPLEX
OXOG-MODIFIED PREINSERTION BINARY COMPLEX
OXOG-MODIFIED POSTINSERTION BINARY COMPLEX
UNMODIFIED INSERTION TERNARY COMPLEX
UNMODIFIED PREINSERTION BINARY COMPLEX
DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1 ,N2-ETHENOGUANINE
DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1 ,N2-ETHENOGUANINE
DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1 ,N2-ETHENOGUANINE
DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1 ,N2-ETHENOGUANINE
EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8-DIHYDRO-8- OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4
EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8-DIHYDRO-8- OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4
EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8-DIHYDRO-8- OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4
EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8-DIHYDRO-8- OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4
EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8-DIHYDRO-8- OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4
TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, O6-METHYLGUANINE MODIFIED DNA, AND DATP.
TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, O6-METHYLGUANINE MODIFIED DNA, AND DATP.
TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, O6-METHYLGUANINE MODIFIED DNA, AND DGTP.
THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOTIDE TRIPHOSPHATE INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE IV: STEADY-STATE AND PRE- STEADY-STATE AND X-RAY CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING
THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE IV: STEADY-STATE AND PRE- STEADY-STATE KINETICS AND X-RAY CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING
THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE IV: STEADY-STATE AND PRE- STEADY-STATE KINETICS AND X-RAY CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING
THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS DNA POLYMERASE IV: STEADY-STATE AND PRE- STEADY-STATE KINETICS AND X-RAY CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING
PDBE
Y
PDBE
2007-03-13
REL
REL
DGT
2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
CA
CALCIUM ION
HOH
water
ENGINEERED RESIDUE IN CHAIN A, ARG 332 TO ALA
2C22
PDB ENTRY 2C22
PDB
experimental model
DGT
1000
4
DGT
DGT
1000
A
CA
3000
5
CA
CA
3000
A
CA
3001
5
CA
CA
3001
A
CA
3002
5
CA
CA
3002
A
HOH
2001
6
HOH
HOH
2001
A
HOH
2002
6
HOH
HOH
2002
A
HOH
2003
6
HOH
HOH
2003
A
HOH
2004
6
HOH
HOH
2004
A
HOH
2005
6
HOH
HOH
2005
A
HOH
2006
6
HOH
HOH
2006
A
HOH
2007
6
HOH
HOH
2007
A
HOH
2008
6
HOH
HOH
2008
A
HOH
2009
6
HOH
HOH
2009
A
HOH
2010
6
HOH
HOH
2010
A
HOH
2011
6
HOH
HOH
2011
A
HOH
2012
6
HOH
HOH
2012
A
HOH
2013
6
HOH
HOH
2013
A
HOH
2014
6
HOH
HOH
2014
A
HOH
2015
6
HOH
HOH
2015
A
HOH
2016
6
HOH
HOH
2016
A
HOH
2017
6
HOH
HOH
2017
A
HOH
2018
6
HOH
HOH
2018
A
HOH
2019
6
HOH
HOH
2019
A
HOH
2020
6
HOH
HOH
2020
A
HOH
2021
6
HOH
HOH
2021
A
HOH
2022
6
HOH
HOH
2022
A
HOH
2023
6
HOH
HOH
2023
A
HOH
2024
6
HOH
HOH
2024
A
HOH
2025
6
HOH
HOH
2025
A
HOH
2026
6
HOH
HOH
2026
A
HOH
2027
6
HOH
HOH
2027
A
HOH
2028
6
HOH
HOH
2028
A
HOH
2029
6
HOH
HOH
2029
A
HOH
2030
6
HOH
HOH
2030
A
HOH
2031
6
HOH
HOH
2031
A
HOH
2032
6
HOH
HOH
2032
A
HOH
2033
6
HOH
HOH
2033
A
HOH
2034
6
HOH
HOH
2034
A
HOH
2035
6
HOH
HOH
2035
A
HOH
2036
6
HOH
HOH
2036
A
HOH
2037
6
HOH
HOH
2037
A
HOH
2038
6
HOH
HOH
2038
A
HOH
2039
6
HOH
HOH
2039
A
HOH
2040
6
HOH
HOH
2040
A
HOH
2041
6
HOH
HOH
2041
A
HOH
2042
6
HOH
HOH
2042
A
HOH
2043
6
HOH
HOH
2043
A
HOH
2044
6
HOH
HOH
2044
A
HOH
2045
6
HOH
HOH
2045
A
HOH
2046
6
HOH
HOH
2046
A
HOH
2001
6
HOH
HOH
2001
P
HOH
2002
6
HOH
HOH
2002
P
HOH
2003
6
HOH
HOH
2003
P
HOH
2004
6
HOH
HOH
2004
P
HOH
2005
6
HOH
HOH
2005
P
HOH
2006
6
HOH
HOH
2006
P
HOH
2007
6
HOH
HOH
2007
P
HOH
2008
6
HOH
HOH
2008
P
HOH
2009
6
HOH
HOH
2009
P
HOH
2010
6
HOH
HOH
2010
P
HOH
2011
6
HOH
HOH
2011
P
HOH
2012
6
HOH
HOH
2012
P
HOH
2013
6
HOH
HOH
2013
P
HOH
2001
6
HOH
HOH
2001
T
HOH
2002
6
HOH
HOH
2002
T
HOH
2003
6
HOH
HOH
2003
T
HOH
2004
6
HOH
HOH
2004
T
HOH
2005
6
HOH
HOH
2005
T
HOH
2006
6
HOH
HOH
2006
T
HOH
2007
6
HOH
HOH
2007
T
HOH
2008
6
HOH
HOH
2008
T
HOH
2009
6
HOH
HOH
2009
T
HOH
2010
6
HOH
HOH
2010
T
HOH
2011
6
HOH
HOH
2011
T
HOH
2012
6
HOH
HOH
2012
T
n
1
-5
A
n
2
-4
A
n
3
-3
A
n
4
-2
A
n
5
-1
A
n
6
0
A
MET
1
n
7
MET
1
A
ILE
2
n
8
ILE
2
A
VAL
3
n
9
VAL
3
A
LEU
4
n
10
LEU
4
A
PHE
5
n
11
PHE
5
A
VAL
6
n
12
VAL
6
A
ASP
7
n
13
ASP
7
A
PHE
8
n
14
PHE
8
A
ASP
9
n
15
ASP
9
A
TYR
10
n
16
TYR
10
A
PHE
11
n
17
PHE
11
A
TYR
12
n
18
TYR
12
A
ALA
13
n
19
ALA
13
A
GLN
14
n
20
GLN
14
A
VAL
15
n
21
VAL
15
A
GLU
16
n
22
GLU
16
A
GLU
17
n
23
GLU
17
A
VAL
18
n
24
VAL
18
A
LEU
19
n
25
LEU
19
A
ASN
20
n
26
ASN
20
A
PRO
21
n
27
PRO
21
A
SER
22
n
28
SER
22
A
LEU
23
n
29
LEU
23
A
LYS
24
n
30
LYS
24
A
GLY
25
n
31
GLY
25
A
LYS
26
n
32
LYS
26
A
PRO
27
n
33
PRO
27
A
VAL
28
n
34
VAL
28
A
VAL
29
n
35
VAL
29
A
VAL
30
n
36
VAL
30
A
CYS
31
n
37
CYS
31
A
VAL
32
n
38
VAL
32
A
PHE
33
n
39
PHE
33
A
SER
34
n
40
SER
34
A
GLY
35
n
41
GLY
35
A
ARG
36
n
42
ARG
36
A
PHE
37
n
43
PHE
37
A
GLU
38
n
44
GLU
38
A
ASP
39
n
45
ASP
39
A
SER
40
n
46
SER
40
A
GLY
41
n
47
GLY
41
A
ALA
42
n
48
ALA
42
A
VAL
43
n
49
VAL
43
A
ALA
44
n
50
ALA
44
A
THR
45
n
51
THR
45
A
ALA
46
n
52
ALA
46
A
ASN
47
n
53
ASN
47
A
TYR
48
n
54
TYR
48
A
GLU
49
n
55
GLU
49
A
ALA
50
n
56
ALA
50
A
ARG
51
n
57
ARG
51
A
LYS
52
n
58
LYS
52
A
PHE
53
n
59
PHE
53
A
GLY
54
n
60
GLY
54
A
VAL
55
n
61
VAL
55
A
LYS
56
n
62
LYS
56
A
ALA
57
n
63
ALA
57
A
GLY
58
n
64
GLY
58
A
ILE
59
n
65
ILE
59
A
PRO
60
n
66
PRO
60
A
ILE
61
n
67
ILE
61
A
VAL
62
n
68
VAL
62
A
GLU
63
n
69
GLU
63
A
ALA
64
n
70
ALA
64
A
LYS
65
n
71
LYS
65
A
LYS
66
n
72
LYS
66
A
ILE
67
n
73
ILE
67
A
LEU
68
n
74
LEU
68
A
PRO
69
n
75
PRO
69
A
ASN
70
n
76
ASN
70
A
ALA
71
n
77
ALA
71
A
VAL
72
n
78
VAL
72
A
TYR
73
n
79
TYR
73
A
LEU
74
n
80
LEU
74
A
PRO
75
n
81
PRO
75
A
MET
76
n
82
MET
76
A
ARG
77
n
83
ARG
77
A
LYS
78
n
84
LYS
78
A
GLU
79
n
85
GLU
79
A
VAL
80
n
86
VAL
80
A
TYR
81
n
87
TYR
81
A
GLN
82
n
88
GLN
82
A
GLN
83
n
89
GLN
83
A
VAL
84
n
90
VAL
84
A
SER
85
n
91
SER
85
A
SER
86
n
92
SER
86
A
ARG
87
n
93
ARG
87
A
ILE
88
n
94
ILE
88
A
MET
89
n
95
MET
89
A
ASN
90
n
96
ASN
90
A
LEU
91
n
97
LEU
91
A
LEU
92
n
98
LEU
92
A
ARG
93
n
99
ARG
93
A
GLU
94
n
100
GLU
94
A
TYR
95
n
101
TYR
95
A
SER
96
n
102
SER
96
A
GLU
97
n
103
GLU
97
A
LYS
98
n
104
LYS
98
A
ILE
99
n
105
ILE
99
A
GLU
100
n
106
GLU
100
A
ILE
101
n
107
ILE
101
A
ALA
102
n
108
ALA
102
A
SER
103
n
109
SER
103
A
ILE
104
n
110
ILE
104
A
ASP
105
n
111
ASP
105
A
GLU
106
n
112
GLU
106
A
ALA
107
n
113
ALA
107
A
TYR
108
n
114
TYR
108
A
LEU
109
n
115
LEU
109
A
ASP
110
n
116
ASP
110
A
ILE
111
n
117
ILE
111
A
SER
112
n
118
SER
112
A
ASP
113
n
119
ASP
113
A
LYS
114
n
120
LYS
114
A
VAL
115
n
121
VAL
115
A
ARG
116
n
122
ARG
116
A
ASP
117
n
123
ASP
117
A
TYR
118
n
124
TYR
118
A
ARG
119
n
125
ARG
119
A
GLU
120
n
126
GLU
120
A
ALA
121
n
127
ALA
121
A
TYR
122
n
128
TYR
122
A
ASN
123
n
129
ASN
123
A
LEU
124
n
130
LEU
124
A
GLY
125
n
131
GLY
125
A
LEU
126
n
132
LEU
126
A
GLU
127
n
133
GLU
127
A
ILE
128
n
134
ILE
128
A
LYS
129
n
135
LYS
129
A
ASN
130
n
136
ASN
130
A
LYS
131
n
137
LYS
131
A
ILE
132
n
138
ILE
132
A
LEU
133
n
139
LEU
133
A
GLU
134
n
140
GLU
134
A
LYS
135
n
141
LYS
135
A
GLU
136
n
142
GLU
136
A
LYS
137
n
143
LYS
137
A
ILE
138
n
144
ILE
138
A
THR
139
n
145
THR
139
A
VAL
140
n
146
VAL
140
A
THR
141
n
147
THR
141
A
VAL
142
n
148
VAL
142
A
GLY
143
n
149
GLY
143
A
ILE
144
n
150
ILE
144
A
SER
145
n
151
SER
145
A
LYS
146
n
152
LYS
146
A
ASN
147
n
153
ASN
147
A
LYS
148
n
154
LYS
148
A
VAL
149
n
155
VAL
149
A
PHE
150
n
156
PHE
150
A
ALA
151
n
157
ALA
151
A
LYS
152
n
158
LYS
152
A
ILE
153
n
159
ILE
153
A
ALA
154
n
160
ALA
154
A
ALA
155
n
161
ALA
155
A
ASP
156
n
162
ASP
156
A
MET
157
n
163
MET
157
A
ALA
158
n
164
ALA
158
A
LYS
159
n
165
LYS
159
A
PRO
160
n
166
PRO
160
A
ASN
161
n
167
ASN
161
A
GLY
162
n
168
GLY
162
A
ILE
163
n
169
ILE
163
A
LYS
164
n
170
LYS
164
A
VAL
165
n
171
VAL
165
A
ILE
166
n
172
ILE
166
A
ASP
167
n
173
ASP
167
A
ASP
168
n
174
ASP
168
A
GLU
169
n
175
GLU
169
A
GLU
170
n
176
GLU
170
A
VAL
171
n
177
VAL
171
A
LYS
172
n
178
LYS
172
A
ARG
173
n
179
ARG
173
A
LEU
174
n
180
LEU
174
A
ILE
175
n
181
ILE
175
A
ARG
176
n
182
ARG
176
A
GLU
177
n
183
GLU
177
A
LEU
178
n
184
LEU
178
A
ASP
179
n
185
ASP
179
A
ILE
180
n
186
ILE
180
A
ALA
181
n
187
ALA
181
A
ASP
182
n
188
ASP
182
A
VAL
183
n
189
VAL
183
A
PRO
184
n
190
PRO
184
A
GLY
185
n
191
GLY
185
A
ILE
186
n
192
ILE
186
A
GLY
187
n
193
GLY
187
A
ASN
188
n
194
ASN
188
A
ILE
189
n
195
ILE
189
A
THR
190
n
196
THR
190
A
ALA
191
n
197
ALA
191
A
GLU
192
n
198
GLU
192
A
LYS
193
n
199
LYS
193
A
LEU
194
n
200
LEU
194
A
LYS
195
n
201
LYS
195
A
LYS
196
n
202
LYS
196
A
LEU
197
n
203
LEU
197
A
GLY
198
n
204
GLY
198
A
ILE
199
n
205
ILE
199
A
ASN
200
n
206
ASN
200
A
LYS
201
n
207
LYS
201
A
LEU
202
n
208
LEU
202
A
VAL
203
n
209
VAL
203
A
ASP
204
n
210
ASP
204
A
THR
205
n
211
THR
205
A
LEU
206
n
212
LEU
206
A
SER
207
n
213
SER
207
A
ILE
208
n
214
ILE
208
A
GLU
209
n
215
GLU
209
A
PHE
210
n
216
PHE
210
A
ASP
211
n
217
ASP
211
A
LYS
212
n
218
LYS
212
A
LEU
213
n
219
LEU
213
A
LYS
214
n
220
LYS
214
A
GLY
215
n
221
GLY
215
A
MET
216
n
222
MET
216
A
ILE
217
n
223
ILE
217
A
GLY
218
n
224
GLY
218
A
GLU
219
n
225
GLU
219
A
ALA
220
n
226
ALA
220
A
LYS
221
n
227
LYS
221
A
ALA
222
n
228
ALA
222
A
LYS
223
n
229
LYS
223
A
TYR
224
n
230
TYR
224
A
LEU
225
n
231
LEU
225
A
ILE
226
n
232
ILE
226
A
SER
227
n
233
SER
227
A
LEU
228
n
234
LEU
228
A
ALA
229
n
235
ALA
229
A
ARG
230
n
236
ARG
230
A
ASP
231
n
237
ASP
231
A
GLU
232
n
238
GLU
232
A
TYR
233
n
239
TYR
233
A
ASN
234
n
240
ASN
234
A
GLU
235
n
241
GLU
235
A
PRO
236
n
242
PRO
236
A
ILE
237
n
243
ILE
237
A
ARG
238
n
244
ARG
238
A
THR
239
n
245
THR
239
A
ARG
240
n
246
ARG
240
A
VAL
241
n
247
VAL
241
A
ARG
242
n
248
ARG
242
A
LYS
243
n
249
LYS
243
A
SER
244
n
250
SER
244
A
ILE
245
n
251
ILE
245
A
GLY
246
n
252
GLY
246
A
ARG
247
n
253
ARG
247
A
ILE
248
n
254
ILE
248
A
VAL
249
n
255
VAL
249
A
THR
250
n
256
THR
250
A
MET
251
n
257
MET
251
A
LYS
252
n
258
LYS
252
A
ARG
253
n
259
ARG
253
A
ASN
254
n
260
ASN
254
A
SER
255
n
261
SER
255
A
ARG
256
n
262
ARG
256
A
ASN
257
n
263
ASN
257
A
LEU
258
n
264
LEU
258
A
GLU
259
n
265
GLU
259
A
GLU
260
n
266
GLU
260
A
ILE
261
n
267
ILE
261
A
LYS
262
n
268
LYS
262
A
PRO
263
n
269
PRO
263
A
TYR
264
n
270
TYR
264
A
LEU
265
n
271
LEU
265
A
PHE
266
n
272
PHE
266
A
ARG
267
n
273
ARG
267
A
ALA
268
n
274
ALA
268
A
ILE
269
n
275
ILE
269
A
GLU
270
n
276
GLU
270
A
GLU
271
n
277
GLU
271
A
SER
272
n
278
SER
272
A
TYR
273
n
279
TYR
273
A
TYR
274
n
280
TYR
274
A
LYS
275
n
281
LYS
275
A
LEU
276
n
282
LEU
276
A
ASP
277
n
283
ASP
277
A
LYS
278
n
284
LYS
278
A
ARG
279
n
285
ARG
279
A
ILE
280
n
286
ILE
280
A
PRO
281
n
287
PRO
281
A
LYS
282
n
288
LYS
282
A
ALA
283
n
289
ALA
283
A
ILE
284
n
290
ILE
284
A
HIS
285
n
291
HIS
285
A
VAL
286
n
292
VAL
286
A
VAL
287
n
293
VAL
287
A
ALA
288
n
294
ALA
288
A
VAL
289
n
295
VAL
289
A
THR
290
n
296
THR
290
A
GLU
291
n
297
GLU
291
A
ASP
292
n
298
ASP
292
A
LEU
293
n
299
LEU
293
A
ASP
294
n
300
ASP
294
A
ILE
295
n
301
ILE
295
A
VAL
296
n
302
VAL
296
A
SER
297
n
303
SER
297
A
ARG
298
n
304
ARG
298
A
GLY
299
n
305
GLY
299
A
ARG
300
n
306
ARG
300
A
THR
301
n
307
THR
301
A
PHE
302
n
308
PHE
302
A
PRO
303
n
309
PRO
303
A
HIS
304
n
310
HIS
304
A
GLY
305
n
311
GLY
305
A
ILE
306
n
312
ILE
306
A
SER
307
n
313
SER
307
A
LYS
308
n
314
LYS
308
A
GLU
309
n
315
GLU
309
A
THR
310
n
316
THR
310
A
ALA
311
n
317
ALA
311
A
TYR
312
n
318
TYR
312
A
SER
313
n
319
SER
313
A
GLU
314
n
320
GLU
314
A
SER
315
n
321
SER
315
A
VAL
316
n
322
VAL
316
A
LYS
317
n
323
LYS
317
A
LEU
318
n
324
LEU
318
A
LEU
319
n
325
LEU
319
A
GLN
320
n
326
GLN
320
A
LYS
321
n
327
LYS
321
A
ILE
322
n
328
ILE
322
A
LEU
323
n
329
LEU
323
A
GLU
324
n
330
GLU
324
A
GLU
325
n
331
GLU
325
A
ASP
326
n
332
ASP
326
A
GLU
327
n
333
GLU
327
A
ARG
328
n
334
ARG
328
A
LYS
329
n
335
LYS
329
A
ILE
330
n
336
ILE
330
A
ARG
331
n
337
ARG
331
A
ALA
332
n
338
ALA
332
A
ILE
333
n
339
ILE
333
A
GLY
334
n
340
GLY
334
A
VAL
335
n
341
VAL
335
A
ARG
336
n
342
ARG
336
A
PHE
337
n
343
PHE
337
A
SER
338
n
344
SER
338
A
LYS
339
n
345
LYS
339
A
PHE
340
n
346
PHE
340
A
ILE
341
n
347
ILE
341
A
GLU
342
n
348
GLU
342
A
n
349
343
A
n
350
344
A
n
351
345
A
n
352
346
A
n
353
347
A
n
354
348
A
n
355
349
A
n
356
350
A
n
357
351
A
n
358
352
A
DG
1
n
1
DG
1
P
DG
2
n
2
DG
2
P
DG
3
n
3
DG
3
P
DG
4
n
4
DG
4
P
DG
5
n
5
DG
5
P
DA
6
n
6
DA
6
P
DA
7
n
7
DA
7
P
DG
8
n
8
DG
8
P
DG
9
n
9
DG
9
P
DA
10
n
10
DA
10
P
DT
11
n
11
DT
11
P
DT
12
n
12
DT
12
P
DC
13
n
13
DC
13
P
DC
14
n
14
DC
14
P
n
1
1
T
DC
2
n
2
DC
2
T
DA
3
n
3
DA
3
T
DC
4
n
4
DC
4
T
8OG
5
n
5
8OG
5
T
DG
6
n
6
DG
6
T
DA
7
n
7
DA
7
T
DA
8
n
8
DA
8
T
DT
9
n
9
DT
9
T
DC
10
n
10
DC
10
T
DC
11
n
11
DC
11
T
DT
12
n
12
DT
12
T
DT
13
n
13
DT
13
T
DC
14
n
14
DC
14
T
DC
15
n
15
DC
15
T
DC
16
n
16
DC
16
T
DC
17
n
17
DC
17
T
DC
18
n
18
DC
18
T
author_and_software_defined_assembly
PQS
3
trimeric
A
ASP
7
A
OD1
ASP
13
1_555
A
CA
3000
E
CA
CA
1_555
A
ASP
7
A
OD2
ASP
13
1_555
41.1
A
ASP
7
A
OD1
ASP
13
1_555
A
CA
3000
E
CA
CA
1_555
A
ASP
105
A
OD2
ASP
111
1_555
90.0
A
ASP
7
A
OD2
ASP
13
1_555
A
CA
3000
E
CA
CA
1_555
A
ASP
105
A
OD2
ASP
111
1_555
50.8
A
ASP
7
A
OD1
ASP
13
1_555
A
CA
3000
E
CA
CA
1_555
A
ASP
105
A
OD1
ASP
111
1_555
124.6
A
ASP
7
A
OD2
ASP
13
1_555
A
CA
3000
E
CA
CA
1_555
A
ASP
105
A
OD1
ASP
111
1_555
83.6
A
ASP
105
A
OD2
ASP
111
1_555
A
CA
3000
E
CA
CA
1_555
A
ASP
105
A
OD1
ASP
111
1_555
39.0
A
ASP
7
A
OD1
ASP
13
1_555
A
CA
3000
E
CA
CA
1_555
A
GLU
106
A
OE2
GLU
112
1_555
81.6
A
ASP
7
A
OD2
ASP
13
1_555
A
CA
3000
E
CA
CA
1_555
A
GLU
106
A
OE2
GLU
112
1_555
102.7
A
ASP
105
A
OD2
ASP
111
1_555
A
CA
3000
E
CA
CA
1_555
A
GLU
106
A
OE2
GLU
112
1_555
135.9
A
ASP
105
A
OD1
ASP
111
1_555
A
CA
3000
E
CA
CA
1_555
A
GLU
106
A
OE2
GLU
112
1_555
117.3
A
ASP
7
A
OD1
ASP
13
1_555
A
CA
3000
E
CA
CA
1_555
A
DGT
1000
D
O1A
DGT
1_555
93.8
A
ASP
7
A
OD2
ASP
13
1_555
A
CA
3000
E
CA
CA
1_555
A
DGT
1000
D
O1A
DGT
1_555
79.8
A
ASP
105
A
OD2
ASP
111
1_555
A
CA
3000
E
CA
CA
1_555
A
DGT
1000
D
O1A
DGT
1_555
53.8
A
ASP
105
A
OD1
ASP
111
1_555
A
CA
3000
E
CA
CA
1_555
A
DGT
1000
D
O1A
DGT
1_555
73.7
A
GLU
106
A
OE2
GLU
112
1_555
A
CA
3000
E
CA
CA
1_555
A
DGT
1000
D
O1A
DGT
1_555
168.9
A
ASP
7
A
OD1
ASP
13
1_555
A
CA
3000
E
CA
CA
1_555
A
HOH
2015
H
O
HOH
1_555
57.2
A
ASP
7
A
OD2
ASP
13
1_555
A
CA
3000
E
CA
CA
1_555
A
HOH
2015
H
O
HOH
1_555
98.3
A
ASP
105
A
OD2
ASP
111
1_555
A
CA
3000
E
CA
CA
1_555
A
HOH
2015
H
O
HOH
1_555
143.8
A
ASP
105
A
OD1
ASP
111
1_555
A
CA
3000
E
CA
CA
1_555
A
HOH
2015
H
O
HOH
1_555
177.1
A
GLU
106
A
OE2
GLU
112
1_555
A
CA
3000
E
CA
CA
1_555
A
HOH
2015
H
O
HOH
1_555
60.2
A
DGT
1000
D
O1A
DGT
1_555
A
CA
3000
E
CA
CA
1_555
A
HOH
2015
H
O
HOH
1_555
108.8
A
ASP
7
A
OD1
ASP
13
1_555
A
CA
3000
E
CA
CA
1_555
A
HOH
2045
H
O
HOH
1_555
71.5
A
ASP
7
A
OD2
ASP
13
1_555
A
CA
3000
E
CA
CA
1_555
A
HOH
2045
H
O
HOH
1_555
88.1
A
ASP
105
A
OD2
ASP
111
1_555
A
CA
3000
E
CA
CA
1_555
A
HOH
2045
H
O
HOH
1_555
93.0
A
ASP
105
A
OD1
ASP
111
1_555
A
CA
3000
E
CA
CA
1_555
A
HOH
2045
H
O
HOH
1_555
118.4
A
GLU
106
A
OE2
GLU
112
1_555
A
CA
3000
E
CA
CA
1_555
A
HOH
2045
H
O
HOH
1_555
124.0
A
DGT
1000
D
O1A
DGT
1_555
A
CA
3000
E
CA
CA
1_555
A
HOH
2045
H
O
HOH
1_555
44.9
A
HOH
2015
H
O
HOH
1_555
A
CA
3000
E
CA
CA
1_555
A
HOH
2045
H
O
HOH
1_555
64.0
A
ASP
7
A
OD2
ASP
13
1_555
A
CA
3001
F
CA
CA
1_555
A
PHE
8
A
O
PHE
14
1_555
99.0
A
ASP
7
A
OD2
ASP
13
1_555
A
CA
3001
F
CA
CA
1_555
A
ASP
105
A
OD2
ASP
111
1_555
62.7
A
PHE
8
A
O
PHE
14
1_555
A
CA
3001
F
CA
CA
1_555
A
ASP
105
A
OD2
ASP
111
1_555
93.4
A
ASP
7
A
OD2
ASP
13
1_555
A
CA
3001
F
CA
CA
1_555
A
DGT
1000
D
O1A
DGT
1_555
89.6
A
PHE
8
A
O
PHE
14
1_555
A
CA
3001
F
CA
CA
1_555
A
DGT
1000
D
O1A
DGT
1_555
152.9
A
ASP
105
A
OD2
ASP
111
1_555
A
CA
3001
F
CA
CA
1_555
A
DGT
1000
D
O1A
DGT
1_555
67.8
A
ASP
7
A
OD2
ASP
13
1_555
A
CA
3001
F
CA
CA
1_555
A
DGT
1000
D
O3B
DGT
1_555
137.3
A
PHE
8
A
O
PHE
14
1_555
A
CA
3001
F
CA
CA
1_555
A
DGT
1000
D
O3B
DGT
1_555
120.8
A
ASP
105
A
OD2
ASP
111
1_555
A
CA
3001
F
CA
CA
1_555
A
DGT
1000
D
O3B
DGT
1_555
123.6
A
DGT
1000
D
O1A
DGT
1_555
A
CA
3001
F
CA
CA
1_555
A
DGT
1000
D
O3B
DGT
1_555
62.2
A
ASP
7
A
OD2
ASP
13
1_555
A
CA
3001
F
CA
CA
1_555
A
DGT
1000
D
O2G
DGT
1_555
109.6
A
PHE
8
A
O
PHE
14
1_555
A
CA
3001
F
CA
CA
1_555
A
DGT
1000
D
O2G
DGT
1_555
100.8
A
ASP
105
A
OD2
ASP
111
1_555
A
CA
3001
F
CA
CA
1_555
A
DGT
1000
D
O2G
DGT
1_555
165.0
A
DGT
1000
D
O1A
DGT
1_555
A
CA
3001
F
CA
CA
1_555
A
DGT
1000
D
O2G
DGT
1_555
100.4
A
DGT
1000
D
O3B
DGT
1_555
A
CA
3001
F
CA
CA
1_555
A
DGT
1000
D
O2G
DGT
1_555
52.2
A
ALA
181
A
O
ALA
187
1_555
A
CA
3002
G
CA
CA
1_555
A
ILE
186
A
O
ILE
192
1_555
79.6
A
ALA
181
A
O
ALA
187
1_555
A
CA
3002
G
CA
CA
1_555
A
HOH
2027
H
O
HOH
1_555
97.5
A
ILE
186
A
O
ILE
192
1_555
A
CA
3002
G
CA
CA
1_555
A
HOH
2027
H
O
HOH
1_555
152.2
A
ALA
181
A
O
ALA
187
1_555
A
CA
3002
G
CA
CA
1_555
A
HOH
2028
H
O
HOH
1_555
78.6
A
ILE
186
A
O
ILE
192
1_555
A
CA
3002
G
CA
CA
1_555
A
HOH
2028
H
O
HOH
1_555
71.2
A
HOH
2027
H
O
HOH
1_555
A
CA
3002
G
CA
CA
1_555
A
HOH
2028
H
O
HOH
1_555
81.1
A
ALA
181
A
O
ALA
187
1_555
A
CA
3002
G
CA
CA
1_555
P
HOH
2011
I
O
HOH
1_555
169.8
A
ILE
186
A
O
ILE
192
1_555
A
CA
3002
G
CA
CA
1_555
P
HOH
2011
I
O
HOH
1_555
92.9
A
HOH
2027
H
O
HOH
1_555
A
CA
3002
G
CA
CA
1_555
P
HOH
2011
I
O
HOH
1_555
92.3
A
HOH
2028
H
O
HOH
1_555
A
CA
3002
G
CA
CA
1_555
P
HOH
2011
I
O
HOH
1_555
105.7
A
ALA
181
A
O
ALA
187
1_555
A
CA
3002
G
CA
CA
1_555
P
HOH
2012
I
O
HOH
1_555
71.7
A
ILE
186
A
O
ILE
192
1_555
A
CA
3002
G
CA
CA
1_555
P
HOH
2012
I
O
HOH
1_555
83.7
A
HOH
2027
H
O
HOH
1_555
A
CA
3002
G
CA
CA
1_555
P
HOH
2012
I
O
HOH
1_555
122.0
A
HOH
2028
H
O
HOH
1_555
A
CA
3002
G
CA
CA
1_555
P
HOH
2012
I
O
HOH
1_555
144.0
P
HOH
2011
I
O
HOH
1_555
A
CA
3002
G
CA
CA
1_555
P
HOH
2012
I
O
HOH
1_555
100.9
T
8OG
5
C
8OG
5
DG
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
100
A
N
GLU
106
A
O
TYR
108
A
O
TYR
114
A
N
LEU
109
A
N
LEU
115
A
O
LEU
4
A
O
LEU
10
A
N
ASP
7
A
N
ASP
13
A
O
THR
141
A
O
THR
147
A
N
ILE
144
A
N
ILE
150
A
O
LYS
164
A
O
LYS
170
A
N
ALA
44
A
N
ALA
50
A
O
VAL
30
A
O
VAL
36
A
N
VAL
29
A
N
VAL
35
A
O
VAL
72
A
O
VAL
78
A
N
SER
255
A
N
SER
261
A
O
ILE
330
A
O
ILE
336
A
O
SER
338
A
O
SER
344
A
N
LYS
282
A
N
LYS
288
A
N
ALA
288
A
N
ALA
294
A
O
VAL
296
A
O
VAL
302
1
A
CA
GLU
342
A
CA
GLU
348
1
Y
1
A
C
GLU
342
A
C
GLU
348
1
Y
1
A
O
GLU
342
A
O
GLU
348
1
Y
1
A
CB
GLU
342
A
CB
GLU
348
1
Y
1
A
CG
GLU
342
A
CG
GLU
348
1
Y
1
A
CD
GLU
342
A
CD
GLU
348
1
Y
1
A
OE1
GLU
342
A
OE1
GLU
348
1
Y
1
A
OE2
GLU
342
A
OE2
GLU
348
1
Y
1
T
P
DC
2
C
P
DC
2
1
Y
1
T
OP1
DC
2
C
OP1
DC
2
1
Y
1
T
OP2
DC
2
C
OP2
DC
2
1
Y
1
A
HIS
-5
A
HIS
1
1
Y
1
A
HIS
-4
A
HIS
2
1
Y
1
A
HIS
-3
A
HIS
3
1
Y
1
A
HIS
-2
A
HIS
4
1
Y
1
A
HIS
-1
A
HIS
5
1
Y
1
A
HIS
0
A
HIS
6
1
Y
1
A
ALA
343
A
ALA
349
1
Y
1
A
ILE
344
A
ILE
350
1
Y
1
A
GLY
345
A
GLY
351
1
Y
1
A
LEU
346
A
LEU
352
1
Y
1
A
ASP
347
A
ASP
353
1
Y
1
A
LYS
348
A
LYS
354
1
Y
1
A
PHE
349
A
PHE
355
1
Y
1
A
PHE
350
A
PHE
356
1
Y
1
A
ASP
351
A
ASP
357
1
Y
1
A
THR
352
A
THR
358
1
Y
1
T
DT
1
C
DT
1
1
Y
1
A
ARG
51
0.165
SIDE CHAIN
1
A
ARG
253
0.116
SIDE CHAIN
1
-3.67
0.50
120.30
116.63
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
253
253
253
N
1
A
PHE
8
-39.14
138.05
1
A
TYR
10
19.53
42.34
1
A
PHE
11
-15.41
-88.39
1
A
PRO
21
-49.06
-18.17
1
A
LYS
24
-32.47
141.32
1
A
ARG
36
-48.41
-72.95
1
A
GLU
38
-31.65
119.37
1
A
VAL
55
-63.91
96.98
1
A
ARG
77
-116.13
61.22
1
A
GLU
94
-71.21
25.04
1
A
SER
96
-178.53
137.43
1
A
SER
103
-168.20
-160.10
1
A
ASP
105
-153.34
26.64
1
A
LYS
114
-138.60
-39.60
1
A
ASP
117
69.17
148.39
1
A
ASN
161
27.38
67.21
1
A
ASP
182
-64.73
5.36
1
A
PRO
184
-36.23
130.81
1
A
ILE
186
-117.41
77.90
1
A
LEU
197
-57.67
-9.12
1
A
THR
205
-65.98
4.29
1
A
ASN
234
-162.12
49.63
1
A
ASN
254
-43.23
163.18
1
A
ASP
277
60.05
-94.06
PROTEIN_REP.PARAM
PROTEIN.TOP
DNA-RNA1.PARAM
DNA-RNA1.TOP
WATER_REP.PARAM
WATER_REP.TOP
DGTP.PARAM
DGTP.TOP
ION.PARAM
ION.TOP
49.4
23.35
0.00
0.00
-9.52
0.00
-13.82
0.265
0.011
0.232
0.232
2.90
46.07
602
11732
5.1
96.9
RANDOM
658925.99
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 2C22
FLAT MODEL
33.141
0.323306
0.50
0.42
46.08
0.44
0.42
2.90
46.07
71
3471
34
628
2738
0.007
1.1
21.8
1.48
1.21
1.50
2.13
2.00
1.69
2.00
2.78
2.50
0.481
0.048
0.437
3.08
100
1629
6
5.8
87.1
35.3
2.900
46.080
2UVR
11732
1.000
0.14000
1
8.7200
4.300
98.3
0.61000
2.90
3.00
1.800
1
3.50
89.0
refinement
CNS
1.1
data reduction
HKL-2000
data scaling
HKL-2000
phasing
CNS
Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructs
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
6
N
N
6
N
N
6
N
N
A
TYR
10
A
TYR
16
HELX_P
A
ASN
20
A
ASN
26
1
1
11
A
PRO
21
A
PRO
27
HELX_P
A
LYS
24
A
LYS
30
5
2
4
A
ASN
47
A
ASN
53
HELX_P
A
LYS
52
A
LYS
58
1
3
6
A
PRO
60
A
PRO
66
HELX_P
A
LEU
68
A
LEU
74
1
4
9
A
ARG
77
A
ARG
83
HELX_P
A
GLU
94
A
GLU
100
1
5
18
A
ARG
116
A
ARG
122
HELX_P
A
LYS
137
A
LYS
143
1
6
22
A
ASN
147
A
ASN
153
HELX_P
A
LYS
159
A
LYS
165
1
7
13
A
ASP
167
A
ASP
173
HELX_P
A
LEU
178
A
LEU
184
1
8
12
A
GLY
187
A
GLY
193
HELX_P
A
GLY
198
A
GLY
204
1
9
12
A
LEU
202
A
LEU
208
HELX_P
A
SER
207
A
SER
213
5
10
6
A
GLU
209
A
GLU
215
HELX_P
A
GLY
218
A
GLY
224
1
11
10
A
GLY
218
A
GLY
224
HELX_P
A
ARG
230
A
ARG
236
1
12
13
A
ASN
257
A
ASN
263
HELX_P
A
LEU
276
A
LEU
282
1
13
20
A
SER
307
A
SER
313
HELX_P
A
GLU
324
A
GLU
330
1
14
18
covale
1.610
both
T
DC
4
C
O3'
DC
4
1_555
T
8OG
5
C
P
8OG
5
1_555
covale
1.610
both
T
8OG
5
C
O3'
8OG
5
1_555
T
DG
6
C
P
DG
6
1_555
metalc
3.267
A
ASP
7
A
OD1
ASP
13
1_555
A
CA
3000
E
CA
CA
1_555
metalc
2.858
A
ASP
7
A
OD2
ASP
13
1_555
A
CA
3000
E
CA
CA
1_555
metalc
2.681
A
ASP
7
A
OD2
ASP
13
1_555
A
CA
3001
F
CA
CA
1_555
metalc
2.124
A
PHE
8
A
O
PHE
14
1_555
A
CA
3001
F
CA
CA
1_555
metalc
3.372
A
ASP
105
A
OD2
ASP
111
1_555
A
CA
3000
E
CA
CA
1_555
metalc
3.104
A
ASP
105
A
OD1
ASP
111
1_555
A
CA
3000
E
CA
CA
1_555
metalc
2.526
A
ASP
105
A
OD2
ASP
111
1_555
A
CA
3001
F
CA
CA
1_555
metalc
2.767
A
GLU
106
A
OE2
GLU
112
1_555
A
CA
3000
E
CA
CA
1_555
metalc
2.763
A
ALA
181
A
O
ALA
187
1_555
A
CA
3002
G
CA
CA
1_555
metalc
2.595
A
ILE
186
A
O
ILE
192
1_555
A
CA
3002
G
CA
CA
1_555
metalc
3.041
A
DGT
1000
D
O1A
DGT
1_555
A
CA
3000
E
CA
CA
1_555
metalc
2.692
A
DGT
1000
D
O1A
DGT
1_555
A
CA
3001
F
CA
CA
1_555
metalc
2.677
A
DGT
1000
D
O3B
DGT
1_555
A
CA
3001
F
CA
CA
1_555
metalc
3.091
A
DGT
1000
D
O2G
DGT
1_555
A
CA
3001
F
CA
CA
1_555
metalc
2.711
A
HOH
2015
H
O
HOH
1_555
A
CA
3000
E
CA
CA
1_555
metalc
2.462
A
HOH
2027
H
O
HOH
1_555
A
CA
3002
G
CA
CA
1_555
metalc
2.109
A
HOH
2028
H
O
HOH
1_555
A
CA
3002
G
CA
CA
1_555
metalc
3.343
A
HOH
2045
H
O
HOH
1_555
A
CA
3000
E
CA
CA
1_555
metalc
2.234
A
CA
3002
G
CA
CA
1_555
P
HOH
2011
I
O
HOH
1_555
metalc
2.936
A
CA
3002
G
CA
CA
1_555
P
HOH
2012
I
O
HOH
1_555
hydrog
WATSON-CRICK
P
DG
1
B
N1
DG
1
1_555
T
DC
18
C
N3
DC
18
1_555
hydrog
WATSON-CRICK
P
DG
1
B
N2
DG
1
1_555
T
DC
18
C
O2
DC
18
1_555
hydrog
WATSON-CRICK
P
DG
1
B
O6
DG
1
1_555
T
DC
18
C
N4
DC
18
1_555
hydrog
WATSON-CRICK
P
DG
2
B
N1
DG
2
1_555
T
DC
17
C
N3
DC
17
1_555
hydrog
WATSON-CRICK
P
DG
2
B
N2
DG
2
1_555
T
DC
17
C
O2
DC
17
1_555
hydrog
WATSON-CRICK
P
DG
2
B
O6
DG
2
1_555
T
DC
17
C
N4
DC
17
1_555
hydrog
WATSON-CRICK
P
DG
3
B
N1
DG
3
1_555
T
DC
16
C
N3
DC
16
1_555
hydrog
WATSON-CRICK
P
DG
3
B
N2
DG
3
1_555
T
DC
16
C
O2
DC
16
1_555
hydrog
WATSON-CRICK
P
DG
3
B
O6
DG
3
1_555
T
DC
16
C
N4
DC
16
1_555
hydrog
WATSON-CRICK
P
DG
4
B
N1
DG
4
1_555
T
DC
15
C
N3
DC
15
1_555
hydrog
WATSON-CRICK
P
DG
4
B
N2
DG
4
1_555
T
DC
15
C
O2
DC
15
1_555
hydrog
WATSON-CRICK
P
DG
4
B
O6
DG
4
1_555
T
DC
15
C
N4
DC
15
1_555
hydrog
WATSON-CRICK
P
DG
5
B
N1
DG
5
1_555
T
DC
14
C
N3
DC
14
1_555
hydrog
WATSON-CRICK
P
DG
5
B
N2
DG
5
1_555
T
DC
14
C
O2
DC
14
1_555
hydrog
WATSON-CRICK
P
DG
5
B
O6
DG
5
1_555
T
DC
14
C
N4
DC
14
1_555
hydrog
WATSON-CRICK
P
DA
6
B
N1
DA
6
1_555
T
DT
13
C
N3
DT
13
1_555
hydrog
WATSON-CRICK
P
DA
6
B
N6
DA
6
1_555
T
DT
13
C
O4
DT
13
1_555
hydrog
WATSON-CRICK
P
DA
7
B
N1
DA
7
1_555
T
DT
12
C
N3
DT
12
1_555
hydrog
WATSON-CRICK
P
DA
7
B
N6
DA
7
1_555
T
DT
12
C
O4
DT
12
1_555
hydrog
WATSON-CRICK
P
DG
8
B
N1
DG
8
1_555
T
DC
11
C
N3
DC
11
1_555
hydrog
WATSON-CRICK
P
DG
8
B
N2
DG
8
1_555
T
DC
11
C
O2
DC
11
1_555
hydrog
WATSON-CRICK
P
DG
8
B
O6
DG
8
1_555
T
DC
11
C
N4
DC
11
1_555
hydrog
WATSON-CRICK
P
DG
9
B
N1
DG
9
1_555
T
DC
10
C
N3
DC
10
1_555
hydrog
WATSON-CRICK
P
DG
9
B
N2
DG
9
1_555
T
DC
10
C
O2
DC
10
1_555
hydrog
WATSON-CRICK
P
DG
9
B
O6
DG
9
1_555
T
DC
10
C
N4
DC
10
1_555
hydrog
WATSON-CRICK
P
DA
10
B
N1
DA
10
1_555
T
DT
9
C
N3
DT
9
1_555
hydrog
WATSON-CRICK
P
DA
10
B
N6
DA
10
1_555
T
DT
9
C
O4
DT
9
1_555
hydrog
WATSON-CRICK
P
DT
11
B
N3
DT
11
1_555
T
DA
8
C
N1
DA
8
1_555
hydrog
WATSON-CRICK
P
DT
11
B
O4
DT
11
1_555
T
DA
8
C
N6
DA
8
1_555
hydrog
WATSON-CRICK
P
DT
12
B
N3
DT
12
1_555
T
DA
7
C
N1
DA
7
1_555
hydrog
WATSON-CRICK
P
DT
12
B
O4
DT
12
1_555
T
DA
7
C
N6
DA
7
1_555
hydrog
WATSON-CRICK
P
DC
13
B
N3
DC
13
1_555
T
DG
6
C
N1
DG
6
1_555
hydrog
WATSON-CRICK
P
DC
13
B
N4
DC
13
1_555
T
DG
6
C
O6
DG
6
1_555
hydrog
WATSON-CRICK
P
DC
13
B
O2
DC
13
1_555
T
DG
6
C
N2
DG
6
1_555
hydrog
WATSON-CRICK
P
DC
14
B
N3
DC
14
1_555
T
8OG
5
C
N1
8OG
5
1_555
hydrog
WATSON-CRICK
P
DC
14
B
N4
DC
14
1_555
T
8OG
5
C
O6
8OG
5
1_555
hydrog
WATSON-CRICK
P
DC
14
B
O2
DC
14
1_555
T
8OG
5
C
N2
8OG
5
1_555
TRANSFERASE
TRANSFERASE, DNA-DIRECTED DNA POLYMERASE, P2 DNA POLYMERASE IV, NUCLEOTIDYLTRANSFERASE, 7, MAGNESIUM, DNA DAMAGE, DNA REPAIR, DNA-BINDING, TRANSLESION DNA POLYMERASE, METAL-BINDING, 8-DIHYDRO-8- OXODEOXYGUANOSINE, METAL- BINDING, MUTATOR PROTEIN, DNA REPLICATION
A
LYS
159
A
LYS
165
1
A
PRO
160
A
PRO
166
-0.16
2UVR
PDB
1
2UVR
DPO42_SULSO
UNP
1
Q97W02
2UVR
PDB
2
2UVR
2UVR
PDB
3
2UVR
-5
0
2UVR
-5
0
2UVR
A
1
1
6
1
352
2UVR
1
352
Q97W02
A
2
7
358
1
14
2UVR
1
14
2UVR
P
3
1
14
1
18
2UVR
1
18
2UVR
T
4
1
18
1
ARG
engineered mutation
ALA
332
2UVR
A
Q97W02
UNP
332
338
5
3
4
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
99
A
ILE
105
A
ILE
101
A
ILE
107
A
GLU
106
A
GLU
112
A
ASP
110
A
ASP
116
A
VAL
3
A
VAL
9
A
PHE
8
A
PHE
14
A
VAL
140
A
VAL
146
A
SER
145
A
SER
151
A
ILE
163
A
ILE
169
A
VAL
165
A
VAL
171
A
GLY
41
A
GLY
47
A
ALA
46
A
ALA
52
A
VAL
28
A
VAL
34
A
PHE
33
A
PHE
39
A
VAL
72
A
VAL
78
A
PRO
75
A
PRO
81
A
SER
244
A
SER
250
A
SER
255
A
SER
261
A
ILE
330
A
ILE
336
A
PHE
340
A
PHE
346
A
PRO
281
A
PRO
287
A
THR
290
A
THR
296
A
ILE
295
A
ILE
301
A
THR
301
A
THR
307
BINDING SITE FOR RESIDUE CA A3000
Software
6
BINDING SITE FOR RESIDUE CA A3001
Software
4
BINDING SITE FOR RESIDUE CA A3002
Software
6
BINDING SITE FOR RESIDUE DGT A1000
Software
17
A
ASP
7
A
ASP
13
6
1_555
A
ASP
105
A
ASP
111
6
1_555
A
GLU
106
A
GLU
112
6
1_555
A
DGT
1000
D
DGT
6
1_555
A
HOH
2015
H
HOH
6
1_555
P
DC
14
B
DC
14
6
1_555
A
ASP
7
A
ASP
13
4
1_555
A
PHE
8
A
PHE
14
4
1_555
A
ASP
105
A
ASP
111
4
1_555
A
DGT
1000
D
DGT
4
1_555
A
ALA
181
A
ALA
187
6
1_555
A
ILE
186
A
ILE
192
6
1_555
A
HOH
2027
H
HOH
6
1_555
A
HOH
2028
H
HOH
6
1_555
P
HOH
2011
I
HOH
6
1_555
P
HOH
2012
I
HOH
6
1_555
A
ASP
9
A
ASP
15
17
1_555
A
TYR
10
A
TYR
16
17
1_555
A
PHE
11
A
PHE
17
17
1_555
A
TYR
12
A
TYR
18
17
1_555
A
ALA
44
A
ALA
50
17
1_555
A
THR
45
A
THR
51
17
1_555
A
TYR
48
A
TYR
54
17
1_555
A
ARG
51
A
ARG
57
17
1_555
A
ASP
105
A
ASP
111
17
1_555
A
LYS
159
A
LYS
165
17
1_555
A
HOH
2045
H
HOH
17
1_555
A
HOH
2046
H
HOH
17
1_555
A
CA
3000
E
CA
17
1_555
A
CA
3001
F
CA
17
1_555
P
DC
14
B
DC
14
17
1_555
T
DC
4
C
DC
4
17
1_555
T
8OG
5
C
8OG
5
17
1_555
18
P 21 21 2