0.015084
0.000000
0.000000
0.000000
0.015084
0.000000
0.000000
0.000000
0.014599
0.00000
0.00000
0.00000
Wiesand, U.
Sorg, I.
Amstutz, M.
Wagner, S.
Van Den Heuvel, J.
Luehrs, T.
Cornelis, G.R.
Heinz, D.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
66.297
66.297
68.500
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
385
854
10.1016/J.JMB.2008.10.034
18976663
Structure of the Type III Secretion Recognition Protein Yscu from Yersinia Enterocolitica
2009
US
J.Bacteriol.
JOBAAY
0767
0021-9193
176
4534
8045883
Yscu, a Yersinia Enterocolitica Inner Membrane Protein Involved in Yop Secretion.
1994
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2007-06-26
MARRESEARCH
MAD
M
x-ray
1
0.97854
1.0
X12
EMBL/DESY, HAMBURG
0.97854
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE X12
16994.943
YSCU
C-TERMINAL DOMAIN, RESIDUES 211-354
YES
1
man
polymer
35.453
CHLORIDE ION
1
syn
non-polymer
18.015
water
52
nat
water
no
yes
IKELK(MSE)SKDEIKREYKE(MSE)EGSPEIKSKRRQFHQEIQSGN(MSE)RENVKRSSVVVAAPTHIAIGILYKRGET
PLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNIEKQHSE(MSE)L
IKELKMSKDEIKREYKEMEGSPEIKSKRRQFHQEIQSGNMRENVKRSSVVVAAPTHIAIGILYKRGETPLPLVTFKYTDA
QVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNIEKQHSEML
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
W22703
sample
630
YERSINIA ENTEROCOLITICA
562
ESCHERICHIA COLI
TUNER DE3
PGEX-6-P1
1
2.23
45
NONE
VAPOR DIFFUSION, HANGING DROP
HANGING DROP METHOD USING 3 UL OF A 8 MG/ML PROTEIN SOLUTION MIXED WITH 3UL RESERVOIR BUFFER (1.6 M (NH4)2SO4, 0.2 M NACL, 0.1 M HEPES PH 7.5) IN THE DROPLET.
database_PDB_rev
database_PDB_rev_record
exptl_crystal_grow
pdbx_database_proc
pdbx_database_status
struct_conn
diffrn_source
repository
Initial release
Version format compliance
Version format compliance
Data collection
Derived calculations
Experimental preparation
Other
Data collection
1
0
2008-11-04
1
1
2011-05-08
1
2
2011-07-13
1
3
2019-05-08
1
4
2019-07-24
_exptl_crystal_grow.method
_pdbx_database_status.recvd_author_approval
_struct_conn.pdbx_leaving_atom_flag
_diffrn_source.pdbx_synchrotron_site
CRYSTAL STRUCTURE OF THE MUTATED N263D YSCU C-TERMINAL DOMAIN
PDBE
Y
PDBE
2008-10-06
REL
CL
CHLORIDE ION
HOH
water
ENGINEERED RESIDUE IN CHAIN A, ASN 263 TO ALA
CL
1342
2
CL
CL
1342
A
HOH
2001
3
HOH
HOH
2001
A
HOH
2002
3
HOH
HOH
2002
A
HOH
2003
3
HOH
HOH
2003
A
HOH
2004
3
HOH
HOH
2004
A
HOH
2005
3
HOH
HOH
2005
A
HOH
2006
3
HOH
HOH
2006
A
HOH
2007
3
HOH
HOH
2007
A
HOH
2008
3
HOH
HOH
2008
A
HOH
2009
3
HOH
HOH
2009
A
HOH
2010
3
HOH
HOH
2010
A
HOH
2011
3
HOH
HOH
2011
A
HOH
2012
3
HOH
HOH
2012
A
HOH
2013
3
HOH
HOH
2013
A
HOH
2014
3
HOH
HOH
2014
A
HOH
2015
3
HOH
HOH
2015
A
HOH
2016
3
HOH
HOH
2016
A
HOH
2017
3
HOH
HOH
2017
A
HOH
2018
3
HOH
HOH
2018
A
HOH
2019
3
HOH
HOH
2019
A
HOH
2020
3
HOH
HOH
2020
A
HOH
2021
3
HOH
HOH
2021
A
HOH
2022
3
HOH
HOH
2022
A
HOH
2023
3
HOH
HOH
2023
A
HOH
2024
3
HOH
HOH
2024
A
HOH
2025
3
HOH
HOH
2025
A
HOH
2026
3
HOH
HOH
2026
A
HOH
2027
3
HOH
HOH
2027
A
HOH
2028
3
HOH
HOH
2028
A
HOH
2029
3
HOH
HOH
2029
A
HOH
2030
3
HOH
HOH
2030
A
HOH
2031
3
HOH
HOH
2031
A
HOH
2032
3
HOH
HOH
2032
A
HOH
2033
3
HOH
HOH
2033
A
HOH
2034
3
HOH
HOH
2034
A
HOH
2035
3
HOH
HOH
2035
A
HOH
2036
3
HOH
HOH
2036
A
HOH
2037
3
HOH
HOH
2037
A
HOH
2038
3
HOH
HOH
2038
A
HOH
2039
3
HOH
HOH
2039
A
HOH
2040
3
HOH
HOH
2040
A
HOH
2041
3
HOH
HOH
2041
A
HOH
2042
3
HOH
HOH
2042
A
HOH
2043
3
HOH
HOH
2043
A
HOH
2044
3
HOH
HOH
2044
A
HOH
2045
3
HOH
HOH
2045
A
HOH
2046
3
HOH
HOH
2046
A
HOH
2047
3
HOH
HOH
2047
A
HOH
2048
3
HOH
HOH
2048
A
HOH
2049
3
HOH
HOH
2049
A
HOH
2050
3
HOH
HOH
2050
A
HOH
2051
3
HOH
HOH
2051
A
HOH
2052
3
HOH
HOH
2052
A
n
1
211
A
n
2
212
A
n
3
213
A
n
4
214
A
n
5
215
A
n
6
216
A
n
7
217
A
n
8
218
A
n
9
219
A
n
10
220
A
n
11
221
A
LYS
222
n
12
LYS
222
A
ARG
223
n
13
ARG
223
A
GLU
224
n
14
GLU
224
A
TYR
225
n
15
TYR
225
A
LYS
226
n
16
LYS
226
A
GLU
227
n
17
GLU
227
A
MSE
228
n
18
MSE
228
A
GLU
229
n
19
GLU
229
A
GLY
230
n
20
GLY
230
A
SER
231
n
21
SER
231
A
PRO
232
n
22
PRO
232
A
GLU
233
n
23
GLU
233
A
ILE
234
n
24
ILE
234
A
LYS
235
n
25
LYS
235
A
SER
236
n
26
SER
236
A
LYS
237
n
27
LYS
237
A
ARG
238
n
28
ARG
238
A
ARG
239
n
29
ARG
239
A
GLN
240
n
30
GLN
240
A
PHE
241
n
31
PHE
241
A
HIS
242
n
32
HIS
242
A
GLN
243
n
33
GLN
243
A
GLU
244
n
34
GLU
244
A
ILE
245
n
35
ILE
245
A
GLN
246
n
36
GLN
246
A
SER
247
n
37
SER
247
A
GLY
248
n
38
GLY
248
A
ASN
249
n
39
ASN
249
A
MSE
250
n
40
MSE
250
A
ARG
251
n
41
ARG
251
A
GLU
252
n
42
GLU
252
A
ASN
253
n
43
ASN
253
A
VAL
254
n
44
VAL
254
A
LYS
255
n
45
LYS
255
A
ARG
256
n
46
ARG
256
A
SER
257
n
47
SER
257
A
SER
258
n
48
SER
258
A
VAL
259
n
49
VAL
259
A
VAL
260
n
50
VAL
260
A
VAL
261
n
51
VAL
261
A
ALA
262
n
52
ALA
262
A
ALA
263
n
53
ALA
263
A
PRO
264
n
54
PRO
264
A
THR
265
n
55
THR
265
A
HIS
266
n
56
HIS
266
A
ILE
267
n
57
ILE
267
A
ALA
268
n
58
ALA
268
A
ILE
269
n
59
ILE
269
A
GLY
270
n
60
GLY
270
A
ILE
271
n
61
ILE
271
A
LEU
272
n
62
LEU
272
A
TYR
273
n
63
TYR
273
A
LYS
274
n
64
LYS
274
A
ARG
275
n
65
ARG
275
A
GLY
276
n
66
GLY
276
A
GLU
277
n
67
GLU
277
A
THR
278
n
68
THR
278
A
PRO
279
n
69
PRO
279
A
LEU
280
n
70
LEU
280
A
PRO
281
n
71
PRO
281
A
LEU
282
n
72
LEU
282
A
VAL
283
n
73
VAL
283
A
THR
284
n
74
THR
284
A
PHE
285
n
75
PHE
285
A
LYS
286
n
76
LYS
286
A
TYR
287
n
77
TYR
287
A
THR
288
n
78
THR
288
A
ASP
289
n
79
ASP
289
A
ALA
290
n
80
ALA
290
A
GLN
291
n
81
GLN
291
A
VAL
292
n
82
VAL
292
A
GLN
293
n
83
GLN
293
A
THR
294
n
84
THR
294
A
VAL
295
n
85
VAL
295
A
ARG
296
n
86
ARG
296
A
LYS
297
n
87
LYS
297
A
ILE
298
n
88
ILE
298
A
ALA
299
n
89
ALA
299
A
GLU
300
n
90
GLU
300
A
GLU
301
n
91
GLU
301
A
GLU
302
n
92
GLU
302
A
GLY
303
n
93
GLY
303
A
VAL
304
n
94
VAL
304
A
PRO
305
n
95
PRO
305
A
ILE
306
n
96
ILE
306
A
LEU
307
n
97
LEU
307
A
GLN
308
n
98
GLN
308
A
ARG
309
n
99
ARG
309
A
ILE
310
n
100
ILE
310
A
PRO
311
n
101
PRO
311
A
LEU
312
n
102
LEU
312
A
ALA
313
n
103
ALA
313
A
ARG
314
n
104
ARG
314
A
ALA
315
n
105
ALA
315
A
LEU
316
n
106
LEU
316
A
TYR
317
n
107
TYR
317
A
TRP
318
n
108
TRP
318
A
ASP
319
n
109
ASP
319
A
ALA
320
n
110
ALA
320
A
LEU
321
n
111
LEU
321
A
VAL
322
n
112
VAL
322
A
ASP
323
n
113
ASP
323
A
HIS
324
n
114
HIS
324
A
TYR
325
n
115
TYR
325
A
ILE
326
n
116
ILE
326
A
PRO
327
n
117
PRO
327
A
ALA
328
n
118
ALA
328
A
GLU
329
n
119
GLU
329
A
GLN
330
n
120
GLN
330
A
ILE
331
n
121
ILE
331
A
GLU
332
n
122
GLU
332
A
ALA
333
n
123
ALA
333
A
THR
334
n
124
THR
334
A
ALA
335
n
125
ALA
335
A
GLU
336
n
126
GLU
336
A
VAL
337
n
127
VAL
337
A
LEU
338
n
128
LEU
338
A
ARG
339
n
129
ARG
339
A
TRP
340
n
130
TRP
340
A
LEU
341
n
131
LEU
341
A
n
132
342
A
n
133
343
A
n
134
344
A
n
135
345
A
n
136
346
A
n
137
347
A
n
138
348
A
n
139
349
A
n
140
350
A
n
141
351
A
n
142
352
A
n
143
353
A
n
144
354
A
author_and_software_defined_assembly
PQS
2
dimeric
1880
-10.8
14190
A
MSE
228
SELENOMETHIONINE
A
MSE
18
MET
A
MSE
250
SELENOMETHIONINE
A
MSE
40
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_555
-y,-x,-z+1/2
crystal symmetry operation
0.0000000000
0.0000000000
34.2500000000
A
N
TYR
287
A
N
TYR
77
A
O
ALA
268
A
O
ALA
58
A
N
ILE
271
A
N
ILE
61
A
O
VAL
259
A
O
VAL
49
A
N
ALA
262
A
N
ALA
52
A
O
LEU
307
A
O
LEU
97
1
A
HOH
2041
C
HOH
1
A
ILE
211
A
ILE
1
1
Y
1
A
LYS
212
A
LYS
2
1
Y
1
A
GLU
213
A
GLU
3
1
Y
1
A
LEU
214
A
LEU
4
1
Y
1
A
LYS
215
A
LYS
5
1
Y
1
A
MSE
216
A
MSE
6
1
Y
1
A
SER
217
A
SER
7
1
Y
1
A
LYS
218
A
LYS
8
1
Y
1
A
ASP
219
A
ASP
9
1
Y
1
A
GLU
220
A
GLU
10
1
Y
1
A
ILE
221
A
ILE
11
1
Y
1
A
GLU
342
A
GLU
132
1
Y
1
A
ARG
343
A
ARG
133
1
Y
1
A
GLN
344
A
GLN
134
1
Y
1
A
ASN
345
A
ASN
135
1
Y
1
A
ILE
346
A
ILE
136
1
Y
1
A
GLU
347
A
GLU
137
1
Y
1
A
LYS
348
A
LYS
138
1
Y
1
A
GLN
349
A
GLN
139
1
Y
1
A
HIS
350
A
HIS
140
1
Y
1
A
SER
351
A
SER
141
1
Y
1
A
GLU
352
A
GLU
142
1
Y
1
A
MSE
353
A
MSE
143
1
Y
1
A
LEU
354
A
LEU
144
1
Y
1
A
A
GLY
ASN
248
249
68.38
1
A
HIS
266
-125.58
-53.17
1
A
ASP
289
57.51
-132.24
30.46
-0.33000
0.00000
0.00000
-0.33000
0.00000
0.66000
0.932
0.924
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. MISSING RESIDUES 211-221 AND 343-354 DUE TO WEAK DENSITY
0.253
0.221
0.222
2.00
29.84
328
10436
3.000
99.7
4.549
0.126
RANDOM
1
THROUGHOUT
MAD
0.188
0.164
0.80
0.80
1.20
NONE
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
2.00
29.84
52
1029
1
0
976
0.015
0.022
1054
1.756
1.965
1435
5.263
5.000
132
33.443
22.692
52
15.975
15.000
201
14.906
15.000
13
0.114
0.200
158
0.007
0.020
805
0.206
0.200
487
0.291
0.200
716
0.140
0.200
56
0.167
0.200
47
0.144
0.200
13
2.049
2.000
660
3.052
3.000
1031
2.398
2.500
458
3.298
3.000
399
0.2190
0.2330
2.05
18
734
20
2.05
30.00
2V5G
10836
2.2
0.07
1
8.10
13.6
99.9
0.35
2.05
2.11
2.20
1
13.6
99.9
refinement
REFMAC
5.2.0019
data reduction
MOSFLM
data scaling
SCALEPACK
phasing
Auto-Rickshaw
YSCU
Crystal structure of the mutated N263A YscU C-terminal domain
1
N
N
2
N
N
3
N
N
A
SER
231
A
SER
21
HELX_P
A
ILE
245
A
ILE
35
1
1
15
A
ASN
249
A
ASN
39
HELX_P
A
ARG
256
A
ARG
46
1
2
8
A
ALA
290
A
ALA
80
HELX_P
A
GLY
303
A
GLY
93
1
3
14
A
ARG
309
A
ARG
99
HELX_P
A
ALA
320
A
ALA
110
1
4
12
A
PRO
327
A
PRO
117
HELX_P
A
GLU
329
A
GLU
119
5
5
3
A
GLN
330
A
GLN
120
HELX_P
A
LEU
341
A
LEU
131
1
6
12
covale
1.335
both
A
GLU
227
A
C
GLU
17
1_555
A
MSE
228
A
N
MSE
18
1_555
covale
1.327
both
A
MSE
228
A
C
MSE
18
1_555
A
GLU
229
A
N
GLU
19
1_555
covale
1.316
both
A
ASN
249
A
C
ASN
39
1_555
A
MSE
250
A
N
MSE
40
1_555
covale
1.332
both
A
MSE
250
A
C
MSE
40
1_555
A
ARG
251
A
N
ARG
41
1_555
MEMBRANE PROTEIN
MEMBRANE PROTEIN, PLASMID, AUTOCLEAVAGE, RECOGNITION PROTEIN, TYPE III SECRETION SYSTEM
A
SER
247
A
SER
37
1
A
GLY
248
A
GLY
38
7.56
Q56844_YEREN
UNP
1
Q56844
211
354
2V5G
211
354
Q56844
A
1
1
144
1
ASN
engineered mutation
ALA
263
2V5G
A
Q56844
UNP
263
53
4
anti-parallel
anti-parallel
parallel
A
LEU
282
A
LEU
72
A
THR
288
A
THR
78
A
ILE
267
A
ILE
57
A
LEU
272
A
LEU
62
A
VAL
259
A
VAL
49
A
ALA
263
A
ALA
53
A
ILE
306
A
ILE
96
A
GLN
308
A
GLN
98
BINDING SITE FOR RESIDUE CL A1342
Software
4
A
GLU
224
A
GLU
14
4
1_555
A
TYR
225
A
TYR
15
4
1_555
A
LYS
237
A
LYS
27
4
1_555
A
HOH
2004
C
HOH
4
1_555
96
P 43 21 2