0.015084 0.000000 0.000000 0.000000 0.015084 0.000000 0.000000 0.000000 0.014599 0.00000 0.00000 0.00000 Wiesand, U. Sorg, I. Amstutz, M. Wagner, S. Van Den Heuvel, J. Luehrs, T. Cornelis, G.R. Heinz, D.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 66.297 66.297 68.500 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 385 854 10.1016/J.JMB.2008.10.034 18976663 Structure of the Type III Secretion Recognition Protein Yscu from Yersinia Enterocolitica 2009 US J.Bacteriol. JOBAAY 0767 0021-9193 176 4534 8045883 Yscu, a Yersinia Enterocolitica Inner Membrane Protein Involved in Yop Secretion. 1994 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2007-06-26 MARRESEARCH MAD M x-ray 1 0.97854 1.0 X12 EMBL/DESY, HAMBURG 0.97854 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X12 16994.943 YSCU C-TERMINAL DOMAIN, RESIDUES 211-354 YES 1 man polymer 35.453 CHLORIDE ION 1 syn non-polymer 18.015 water 52 nat water no yes IKELK(MSE)SKDEIKREYKE(MSE)EGSPEIKSKRRQFHQEIQSGN(MSE)RENVKRSSVVVAAPTHIAIGILYKRGET PLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNIEKQHSE(MSE)L IKELKMSKDEIKREYKEMEGSPEIKSKRRQFHQEIQSGNMRENVKRSSVVVAAPTHIAIGILYKRGETPLPLVTFKYTDA QVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNIEKQHSEML A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n W22703 sample 630 YERSINIA ENTEROCOLITICA 562 ESCHERICHIA COLI TUNER DE3 PGEX-6-P1 1 2.23 45 NONE VAPOR DIFFUSION, HANGING DROP HANGING DROP METHOD USING 3 UL OF A 8 MG/ML PROTEIN SOLUTION MIXED WITH 3UL RESERVOIR BUFFER (1.6 M (NH4)2SO4, 0.2 M NACL, 0.1 M HEPES PH 7.5) IN THE DROPLET. database_PDB_rev database_PDB_rev_record exptl_crystal_grow pdbx_database_proc pdbx_database_status struct_conn diffrn_source repository Initial release Version format compliance Version format compliance Data collection Derived calculations Experimental preparation Other Data collection 1 0 2008-11-04 1 1 2011-05-08 1 2 2011-07-13 1 3 2019-05-08 1 4 2019-07-24 _exptl_crystal_grow.method _pdbx_database_status.recvd_author_approval _struct_conn.pdbx_leaving_atom_flag _diffrn_source.pdbx_synchrotron_site CRYSTAL STRUCTURE OF THE MUTATED N263D YSCU C-TERMINAL DOMAIN PDBE Y PDBE 2008-10-06 REL CL CHLORIDE ION HOH water ENGINEERED RESIDUE IN CHAIN A, ASN 263 TO ALA CL 1342 2 CL CL 1342 A HOH 2001 3 HOH HOH 2001 A HOH 2002 3 HOH HOH 2002 A HOH 2003 3 HOH HOH 2003 A HOH 2004 3 HOH HOH 2004 A HOH 2005 3 HOH HOH 2005 A HOH 2006 3 HOH HOH 2006 A HOH 2007 3 HOH HOH 2007 A HOH 2008 3 HOH HOH 2008 A HOH 2009 3 HOH HOH 2009 A HOH 2010 3 HOH HOH 2010 A HOH 2011 3 HOH HOH 2011 A HOH 2012 3 HOH HOH 2012 A HOH 2013 3 HOH HOH 2013 A HOH 2014 3 HOH HOH 2014 A HOH 2015 3 HOH HOH 2015 A HOH 2016 3 HOH HOH 2016 A HOH 2017 3 HOH HOH 2017 A HOH 2018 3 HOH HOH 2018 A HOH 2019 3 HOH HOH 2019 A HOH 2020 3 HOH HOH 2020 A HOH 2021 3 HOH HOH 2021 A HOH 2022 3 HOH HOH 2022 A HOH 2023 3 HOH HOH 2023 A HOH 2024 3 HOH HOH 2024 A HOH 2025 3 HOH HOH 2025 A HOH 2026 3 HOH HOH 2026 A HOH 2027 3 HOH HOH 2027 A HOH 2028 3 HOH HOH 2028 A HOH 2029 3 HOH HOH 2029 A HOH 2030 3 HOH HOH 2030 A HOH 2031 3 HOH HOH 2031 A HOH 2032 3 HOH HOH 2032 A HOH 2033 3 HOH HOH 2033 A HOH 2034 3 HOH HOH 2034 A HOH 2035 3 HOH HOH 2035 A HOH 2036 3 HOH HOH 2036 A HOH 2037 3 HOH HOH 2037 A HOH 2038 3 HOH HOH 2038 A HOH 2039 3 HOH HOH 2039 A HOH 2040 3 HOH HOH 2040 A HOH 2041 3 HOH HOH 2041 A HOH 2042 3 HOH HOH 2042 A HOH 2043 3 HOH HOH 2043 A HOH 2044 3 HOH HOH 2044 A HOH 2045 3 HOH HOH 2045 A HOH 2046 3 HOH HOH 2046 A HOH 2047 3 HOH HOH 2047 A HOH 2048 3 HOH HOH 2048 A HOH 2049 3 HOH HOH 2049 A HOH 2050 3 HOH HOH 2050 A HOH 2051 3 HOH HOH 2051 A HOH 2052 3 HOH HOH 2052 A n 1 211 A n 2 212 A n 3 213 A n 4 214 A n 5 215 A n 6 216 A n 7 217 A n 8 218 A n 9 219 A n 10 220 A n 11 221 A LYS 222 n 12 LYS 222 A ARG 223 n 13 ARG 223 A GLU 224 n 14 GLU 224 A TYR 225 n 15 TYR 225 A LYS 226 n 16 LYS 226 A GLU 227 n 17 GLU 227 A MSE 228 n 18 MSE 228 A GLU 229 n 19 GLU 229 A GLY 230 n 20 GLY 230 A SER 231 n 21 SER 231 A PRO 232 n 22 PRO 232 A GLU 233 n 23 GLU 233 A ILE 234 n 24 ILE 234 A LYS 235 n 25 LYS 235 A SER 236 n 26 SER 236 A LYS 237 n 27 LYS 237 A ARG 238 n 28 ARG 238 A ARG 239 n 29 ARG 239 A GLN 240 n 30 GLN 240 A PHE 241 n 31 PHE 241 A HIS 242 n 32 HIS 242 A GLN 243 n 33 GLN 243 A GLU 244 n 34 GLU 244 A ILE 245 n 35 ILE 245 A GLN 246 n 36 GLN 246 A SER 247 n 37 SER 247 A GLY 248 n 38 GLY 248 A ASN 249 n 39 ASN 249 A MSE 250 n 40 MSE 250 A ARG 251 n 41 ARG 251 A GLU 252 n 42 GLU 252 A ASN 253 n 43 ASN 253 A VAL 254 n 44 VAL 254 A LYS 255 n 45 LYS 255 A ARG 256 n 46 ARG 256 A SER 257 n 47 SER 257 A SER 258 n 48 SER 258 A VAL 259 n 49 VAL 259 A VAL 260 n 50 VAL 260 A VAL 261 n 51 VAL 261 A ALA 262 n 52 ALA 262 A ALA 263 n 53 ALA 263 A PRO 264 n 54 PRO 264 A THR 265 n 55 THR 265 A HIS 266 n 56 HIS 266 A ILE 267 n 57 ILE 267 A ALA 268 n 58 ALA 268 A ILE 269 n 59 ILE 269 A GLY 270 n 60 GLY 270 A ILE 271 n 61 ILE 271 A LEU 272 n 62 LEU 272 A TYR 273 n 63 TYR 273 A LYS 274 n 64 LYS 274 A ARG 275 n 65 ARG 275 A GLY 276 n 66 GLY 276 A GLU 277 n 67 GLU 277 A THR 278 n 68 THR 278 A PRO 279 n 69 PRO 279 A LEU 280 n 70 LEU 280 A PRO 281 n 71 PRO 281 A LEU 282 n 72 LEU 282 A VAL 283 n 73 VAL 283 A THR 284 n 74 THR 284 A PHE 285 n 75 PHE 285 A LYS 286 n 76 LYS 286 A TYR 287 n 77 TYR 287 A THR 288 n 78 THR 288 A ASP 289 n 79 ASP 289 A ALA 290 n 80 ALA 290 A GLN 291 n 81 GLN 291 A VAL 292 n 82 VAL 292 A GLN 293 n 83 GLN 293 A THR 294 n 84 THR 294 A VAL 295 n 85 VAL 295 A ARG 296 n 86 ARG 296 A LYS 297 n 87 LYS 297 A ILE 298 n 88 ILE 298 A ALA 299 n 89 ALA 299 A GLU 300 n 90 GLU 300 A GLU 301 n 91 GLU 301 A GLU 302 n 92 GLU 302 A GLY 303 n 93 GLY 303 A VAL 304 n 94 VAL 304 A PRO 305 n 95 PRO 305 A ILE 306 n 96 ILE 306 A LEU 307 n 97 LEU 307 A GLN 308 n 98 GLN 308 A ARG 309 n 99 ARG 309 A ILE 310 n 100 ILE 310 A PRO 311 n 101 PRO 311 A LEU 312 n 102 LEU 312 A ALA 313 n 103 ALA 313 A ARG 314 n 104 ARG 314 A ALA 315 n 105 ALA 315 A LEU 316 n 106 LEU 316 A TYR 317 n 107 TYR 317 A TRP 318 n 108 TRP 318 A ASP 319 n 109 ASP 319 A ALA 320 n 110 ALA 320 A LEU 321 n 111 LEU 321 A VAL 322 n 112 VAL 322 A ASP 323 n 113 ASP 323 A HIS 324 n 114 HIS 324 A TYR 325 n 115 TYR 325 A ILE 326 n 116 ILE 326 A PRO 327 n 117 PRO 327 A ALA 328 n 118 ALA 328 A GLU 329 n 119 GLU 329 A GLN 330 n 120 GLN 330 A ILE 331 n 121 ILE 331 A GLU 332 n 122 GLU 332 A ALA 333 n 123 ALA 333 A THR 334 n 124 THR 334 A ALA 335 n 125 ALA 335 A GLU 336 n 126 GLU 336 A VAL 337 n 127 VAL 337 A LEU 338 n 128 LEU 338 A ARG 339 n 129 ARG 339 A TRP 340 n 130 TRP 340 A LEU 341 n 131 LEU 341 A n 132 342 A n 133 343 A n 134 344 A n 135 345 A n 136 346 A n 137 347 A n 138 348 A n 139 349 A n 140 350 A n 141 351 A n 142 352 A n 143 353 A n 144 354 A author_and_software_defined_assembly PQS 2 dimeric 1880 -10.8 14190 A MSE 228 SELENOMETHIONINE A MSE 18 MET A MSE 250 SELENOMETHIONINE A MSE 40 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 8_555 -y,-x,-z+1/2 crystal symmetry operation 0.0000000000 0.0000000000 34.2500000000 A N TYR 287 A N TYR 77 A O ALA 268 A O ALA 58 A N ILE 271 A N ILE 61 A O VAL 259 A O VAL 49 A N ALA 262 A N ALA 52 A O LEU 307 A O LEU 97 1 A HOH 2041 C HOH 1 A ILE 211 A ILE 1 1 Y 1 A LYS 212 A LYS 2 1 Y 1 A GLU 213 A GLU 3 1 Y 1 A LEU 214 A LEU 4 1 Y 1 A LYS 215 A LYS 5 1 Y 1 A MSE 216 A MSE 6 1 Y 1 A SER 217 A SER 7 1 Y 1 A LYS 218 A LYS 8 1 Y 1 A ASP 219 A ASP 9 1 Y 1 A GLU 220 A GLU 10 1 Y 1 A ILE 221 A ILE 11 1 Y 1 A GLU 342 A GLU 132 1 Y 1 A ARG 343 A ARG 133 1 Y 1 A GLN 344 A GLN 134 1 Y 1 A ASN 345 A ASN 135 1 Y 1 A ILE 346 A ILE 136 1 Y 1 A GLU 347 A GLU 137 1 Y 1 A LYS 348 A LYS 138 1 Y 1 A GLN 349 A GLN 139 1 Y 1 A HIS 350 A HIS 140 1 Y 1 A SER 351 A SER 141 1 Y 1 A GLU 352 A GLU 142 1 Y 1 A MSE 353 A MSE 143 1 Y 1 A LEU 354 A LEU 144 1 Y 1 A A GLY ASN 248 249 68.38 1 A HIS 266 -125.58 -53.17 1 A ASP 289 57.51 -132.24 30.46 -0.33000 0.00000 0.00000 -0.33000 0.00000 0.66000 0.932 0.924 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. MISSING RESIDUES 211-221 AND 343-354 DUE TO WEAK DENSITY 0.253 0.221 0.222 2.00 29.84 328 10436 3.000 99.7 4.549 0.126 RANDOM 1 THROUGHOUT MAD 0.188 0.164 0.80 0.80 1.20 NONE MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 2.00 29.84 52 1029 1 0 976 0.015 0.022 1054 1.756 1.965 1435 5.263 5.000 132 33.443 22.692 52 15.975 15.000 201 14.906 15.000 13 0.114 0.200 158 0.007 0.020 805 0.206 0.200 487 0.291 0.200 716 0.140 0.200 56 0.167 0.200 47 0.144 0.200 13 2.049 2.000 660 3.052 3.000 1031 2.398 2.500 458 3.298 3.000 399 0.2190 0.2330 2.05 18 734 20 2.05 30.00 2V5G 10836 2.2 0.07 1 8.10 13.6 99.9 0.35 2.05 2.11 2.20 1 13.6 99.9 refinement REFMAC 5.2.0019 data reduction MOSFLM data scaling SCALEPACK phasing Auto-Rickshaw YSCU Crystal structure of the mutated N263A YscU C-terminal domain 1 N N 2 N N 3 N N A SER 231 A SER 21 HELX_P A ILE 245 A ILE 35 1 1 15 A ASN 249 A ASN 39 HELX_P A ARG 256 A ARG 46 1 2 8 A ALA 290 A ALA 80 HELX_P A GLY 303 A GLY 93 1 3 14 A ARG 309 A ARG 99 HELX_P A ALA 320 A ALA 110 1 4 12 A PRO 327 A PRO 117 HELX_P A GLU 329 A GLU 119 5 5 3 A GLN 330 A GLN 120 HELX_P A LEU 341 A LEU 131 1 6 12 covale 1.335 both A GLU 227 A C GLU 17 1_555 A MSE 228 A N MSE 18 1_555 covale 1.327 both A MSE 228 A C MSE 18 1_555 A GLU 229 A N GLU 19 1_555 covale 1.316 both A ASN 249 A C ASN 39 1_555 A MSE 250 A N MSE 40 1_555 covale 1.332 both A MSE 250 A C MSE 40 1_555 A ARG 251 A N ARG 41 1_555 MEMBRANE PROTEIN MEMBRANE PROTEIN, PLASMID, AUTOCLEAVAGE, RECOGNITION PROTEIN, TYPE III SECRETION SYSTEM A SER 247 A SER 37 1 A GLY 248 A GLY 38 7.56 Q56844_YEREN UNP 1 Q56844 211 354 2V5G 211 354 Q56844 A 1 1 144 1 ASN engineered mutation ALA 263 2V5G A Q56844 UNP 263 53 4 anti-parallel anti-parallel parallel A LEU 282 A LEU 72 A THR 288 A THR 78 A ILE 267 A ILE 57 A LEU 272 A LEU 62 A VAL 259 A VAL 49 A ALA 263 A ALA 53 A ILE 306 A ILE 96 A GLN 308 A GLN 98 BINDING SITE FOR RESIDUE CL A1342 Software 4 A GLU 224 A GLU 14 4 1_555 A TYR 225 A TYR 15 4 1_555 A LYS 237 A LYS 27 4 1_555 A HOH 2004 C HOH 4 1_555 96 P 43 21 2