0.015940 0.009203 0.000000 0.000000 0.018406 0.000000 0.000000 0.000000 0.010808 0.00000 0.00000 0.00000 Kvansakul, M. Huang, D.C.S. Colman, P.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 62.736 62.736 92.523 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Br -1 79.904 BROMIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Plos Pathog. 1553-7366 6 1236 10.1371/JOURNAL.PPAT.1001236 21203485 Structural Basis for Apoptosis Inhibition by Epstein-Barr Virus Bhrf1. 2010 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2007-06-22 ADSC QUANTUM 210r SINGLE WAVELENGTH M x-ray 1 1.5479 1.0 MX1 Australian Synchrotron 1.5479 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 19848.367 BHRF1 PROTEIN RESIDUES 1-160 1 nat polymer 3274.691 BCL-2-LIKE PROTEIN 11 RESIDUES 141-166 1 nat polymer 79.904 BROMIDE ION 5 syn non-polymer 18.015 water 27 nat water BHRF1, EA-R, NUCLEAR ANTIGEN, BHRF-1, EARLY ANTIGEN PROTEIN R BCL2-INTERACTING MEDIATOR OF CELL DEATH, BCL2-L-11, BCL2-LIKE 11 TRANSCRIPT VARIANT 9, BIM no no MGSHHHHHHSQDPMAYSTREILLALCIRDSRVHGNGTLHPVLELAARETPLRLSPEDTVVLRYHVLLEEIIERNSETFTE TWNRFITHTEHVDLDFNSVFLEIFHRGDPSLGRALAWMAWCMHACRTLCCNQSTPYYVVDLSVRGMLEASEGLDGWIHQQ GGWSTLIEDNIPG MGSHHHHHHSQDPMAYSTREILLALCIRDSRVHGNGTLHPVLELAARETPLRLSPEDTVVLRYHVLLEEIIERNSETFTE TWNRFITHTEHVDLDFNSVFLEIFHRGDPSLGRALAWMAWCMHACRTLCCNQSTPYYVVDLSVRGMLEASEGLDGWIHQQ GGWSTLIEDNIPG A polypeptide(L) no no DMRPEIWIAQELRRIGDEFNAYYARR DMRPEIWIAQELRRIGDEFNAYYARR B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n EPSTEIN-BARR VIRUS sample 10376 HUMAN HERPESVIRUS 4 GD1 HUMAN sample 9606 HOMO SAPIENS 2 2.28 46 NONE 4 0.1 M MALIC ACID PH 4.0, 1.7 M NABR, 0.1 M GUANIDINE HCL repository Initial release Version format compliance Version format compliance 1 0 2008-08-19 1 1 2011-05-08 1 2 2011-07-13 HUMAN BCL-2A1 IN COMPLEX WITH BIM CRYSTAL STRUCTURE OF ANTI-APOPTOTIC BHRF1 IN COMPLEX WITH THE BIM BH3 DOMAIN PDBE Y PDBE 2007-07-20 REL BR BROMIDE ION HOH water BR 1157 3 BR BR 1157 A BR 1158 3 BR BR 1158 A BR 1159 3 BR BR 1159 A BR 1160 3 BR BR 1160 A BR 1161 3 BR BR 1161 A HOH 2001 4 HOH HOH 2001 A HOH 2002 4 HOH HOH 2002 A HOH 2003 4 HOH HOH 2003 A HOH 2004 4 HOH HOH 2004 A HOH 2005 4 HOH HOH 2005 A HOH 2006 4 HOH HOH 2006 A HOH 2007 4 HOH HOH 2007 A HOH 2008 4 HOH HOH 2008 A HOH 2009 4 HOH HOH 2009 A HOH 2010 4 HOH HOH 2010 A HOH 2011 4 HOH HOH 2011 A HOH 2012 4 HOH HOH 2012 A HOH 2013 4 HOH HOH 2013 A HOH 2014 4 HOH HOH 2014 A HOH 2015 4 HOH HOH 2015 A HOH 2016 4 HOH HOH 2016 A HOH 2017 4 HOH HOH 2017 A HOH 2018 4 HOH HOH 2018 A HOH 2019 4 HOH HOH 2019 A HOH 2020 4 HOH HOH 2020 A HOH 2021 4 HOH HOH 2021 A HOH 2022 4 HOH HOH 2022 A HOH 2023 4 HOH HOH 2023 A HOH 2024 4 HOH HOH 2024 A HOH 2025 4 HOH HOH 2025 A HOH 2026 4 HOH HOH 2026 A HOH 2001 4 HOH HOH 2001 B n 1 -12 A n 2 -11 A n 3 -10 A n 4 -9 A n 5 -8 A n 6 -7 A n 7 -6 A n 8 -5 A n 9 -4 A n 10 -3 A n 11 -2 A n 12 -1 A n 13 0 A MET 1 n 14 MET 1 A ALA 2 n 15 ALA 2 A TYR 3 n 16 TYR 3 A SER 4 n 17 SER 4 A THR 5 n 18 THR 5 A ARG 6 n 19 ARG 6 A GLU 7 n 20 GLU 7 A ILE 8 n 21 ILE 8 A LEU 9 n 22 LEU 9 A LEU 10 n 23 LEU 10 A ALA 11 n 24 ALA 11 A LEU 12 n 25 LEU 12 A CYS 13 n 26 CYS 13 A ILE 14 n 27 ILE 14 A ARG 15 n 28 ARG 15 A ASP 16 n 29 ASP 16 A SER 17 n 30 SER 17 A ARG 18 n 31 ARG 18 A VAL 19 n 32 VAL 19 A HIS 20 n 33 HIS 20 A GLY 21 n 34 GLY 21 A ASN 22 n 35 ASN 22 A GLY 23 n 36 GLY 23 A THR 24 n 37 THR 24 A LEU 25 n 38 LEU 25 A HIS 26 n 39 HIS 26 A PRO 27 n 40 PRO 27 A VAL 28 n 41 VAL 28 A LEU 29 n 42 LEU 29 A GLU 30 n 43 GLU 30 A LEU 31 n 44 LEU 31 A ALA 32 n 45 ALA 32 A ALA 33 n 46 ALA 33 A ARG 34 n 47 ARG 34 A GLU 35 n 48 GLU 35 A THR 36 n 49 THR 36 A PRO 37 n 50 PRO 37 A LEU 38 n 51 LEU 38 A ARG 39 n 52 ARG 39 A LEU 40 n 53 LEU 40 A SER 41 n 54 SER 41 A PRO 42 n 55 PRO 42 A GLU 43 n 56 GLU 43 A ASP 44 n 57 ASP 44 A THR 45 n 58 THR 45 A VAL 46 n 59 VAL 46 A VAL 47 n 60 VAL 47 A LEU 48 n 61 LEU 48 A ARG 49 n 62 ARG 49 A TYR 50 n 63 TYR 50 A HIS 51 n 64 HIS 51 A VAL 52 n 65 VAL 52 A LEU 53 n 66 LEU 53 A LEU 54 n 67 LEU 54 A GLU 55 n 68 GLU 55 A GLU 56 n 69 GLU 56 A ILE 57 n 70 ILE 57 A ILE 58 n 71 ILE 58 A GLU 59 n 72 GLU 59 A ARG 60 n 73 ARG 60 A ASN 61 n 74 ASN 61 A SER 62 n 75 SER 62 A GLU 63 n 76 GLU 63 A THR 64 n 77 THR 64 A PHE 65 n 78 PHE 65 A THR 66 n 79 THR 66 A GLU 67 n 80 GLU 67 A THR 68 n 81 THR 68 A TRP 69 n 82 TRP 69 A ASN 70 n 83 ASN 70 A ARG 71 n 84 ARG 71 A PHE 72 n 85 PHE 72 A ILE 73 n 86 ILE 73 A THR 74 n 87 THR 74 A HIS 75 n 88 HIS 75 A THR 76 n 89 THR 76 A GLU 77 n 90 GLU 77 A HIS 78 n 91 HIS 78 A VAL 79 n 92 VAL 79 A ASP 80 n 93 ASP 80 A LEU 81 n 94 LEU 81 A ASP 82 n 95 ASP 82 A PHE 83 n 96 PHE 83 A ASN 84 n 97 ASN 84 A SER 85 n 98 SER 85 A VAL 86 n 99 VAL 86 A PHE 87 n 100 PHE 87 A LEU 88 n 101 LEU 88 A GLU 89 n 102 GLU 89 A ILE 90 n 103 ILE 90 A PHE 91 n 104 PHE 91 A HIS 92 n 105 HIS 92 A ARG 93 n 106 ARG 93 A GLY 94 n 107 GLY 94 A ASP 95 n 108 ASP 95 A PRO 96 n 109 PRO 96 A SER 97 n 110 SER 97 A LEU 98 n 111 LEU 98 A GLY 99 n 112 GLY 99 A ARG 100 n 113 ARG 100 A ALA 101 n 114 ALA 101 A LEU 102 n 115 LEU 102 A ALA 103 n 116 ALA 103 A TRP 104 n 117 TRP 104 A MET 105 n 118 MET 105 A ALA 106 n 119 ALA 106 A TRP 107 n 120 TRP 107 A CYS 108 n 121 CYS 108 A MET 109 n 122 MET 109 A HIS 110 n 123 HIS 110 A ALA 111 n 124 ALA 111 A CYS 112 n 125 CYS 112 A ARG 113 n 126 ARG 113 A THR 114 n 127 THR 114 A LEU 115 n 128 LEU 115 A CYS 116 n 129 CYS 116 A CYS 117 n 130 CYS 117 A ASN 118 n 131 ASN 118 A GLN 119 n 132 GLN 119 A SER 120 n 133 SER 120 A THR 121 n 134 THR 121 A PRO 122 n 135 PRO 122 A TYR 123 n 136 TYR 123 A TYR 124 n 137 TYR 124 A VAL 125 n 138 VAL 125 A VAL 126 n 139 VAL 126 A ASP 127 n 140 ASP 127 A LEU 128 n 141 LEU 128 A SER 129 n 142 SER 129 A VAL 130 n 143 VAL 130 A ARG 131 n 144 ARG 131 A GLY 132 n 145 GLY 132 A MET 133 n 146 MET 133 A LEU 134 n 147 LEU 134 A GLU 135 n 148 GLU 135 A ALA 136 n 149 ALA 136 A SER 137 n 150 SER 137 A GLU 138 n 151 GLU 138 A GLY 139 n 152 GLY 139 A LEU 140 n 153 LEU 140 A ASP 141 n 154 ASP 141 A GLY 142 n 155 GLY 142 A TRP 143 n 156 TRP 143 A ILE 144 n 157 ILE 144 A HIS 145 n 158 HIS 145 A GLN 146 n 159 GLN 146 A GLN 147 n 160 GLN 147 A GLY 148 n 161 GLY 148 A GLY 149 n 162 GLY 149 A TRP 150 n 163 TRP 150 A SER 151 n 164 SER 151 A THR 152 n 165 THR 152 A LEU 153 n 166 LEU 153 A ILE 154 n 167 ILE 154 A GLU 155 n 168 GLU 155 A ASP 156 n 169 ASP 156 A n 170 157 A n 171 158 A n 172 159 A n 173 160 A ASP 51 n 1 ASP 51 B MET 52 n 2 MET 52 B ARG 53 n 3 ARG 53 B PRO 54 n 4 PRO 54 B GLU 55 n 5 GLU 55 B ILE 56 n 6 ILE 56 B TRP 57 n 7 TRP 57 B ILE 58 n 8 ILE 58 B ALA 59 n 9 ALA 59 B GLN 60 n 10 GLN 60 B GLU 61 n 11 GLU 61 B LEU 62 n 12 LEU 62 B ARG 63 n 13 ARG 63 B ARG 64 n 14 ARG 64 B ILE 65 n 15 ILE 65 B GLY 66 n 16 GLY 66 B ASP 67 n 17 ASP 67 B GLU 68 n 18 GLU 68 B PHE 69 n 19 PHE 69 B ASN 70 n 20 ASN 70 B ALA 71 n 21 ALA 71 B TYR 72 n 22 TYR 72 B TYR 73 n 23 TYR 73 B n 24 74 B n 25 75 B n 26 76 B 0.8183 0.0787 -0.2800 1.3949 -0.4793 1.3121 -0.0281 -0.0098 0.0120 -0.0523 0.0722 0.0263 -0.0929 -0.0302 -0.0441 0.1007 -0.0329 -0.0058 0.0823 0.0055 0.0557 refined 32.0440 12.7015 5.7113 X-RAY DIFFRACTION A 1 A 156 X-RAY DIFFRACTION 1 A 1157 A 1160 X-RAY DIFFRACTION 1 A 2002 A 2026 X-RAY DIFFRACTION 1 B 2001 B 2001 X-RAY DIFFRACTION 1 B 51 B 72 X-RAY DIFFRACTION 1 author_and_software_defined_assembly PISA 2 dimeric 2540 -16.3 8570 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A CG ARG 39 A CG ARG 52 1 Y 1 A CD ARG 39 A CD ARG 52 1 Y 1 A NE ARG 39 A NE ARG 52 1 Y 1 A CZ ARG 39 A CZ ARG 52 1 Y 1 A NH1 ARG 39 A NH1 ARG 52 1 Y 1 A NH2 ARG 39 A NH2 ARG 52 1 Y 1 A CG ASP 95 A CG ASP 108 1 Y 1 A OD1 ASP 95 A OD1 ASP 108 1 Y 1 A OD2 ASP 95 A OD2 ASP 108 1 Y 1 A CG GLN 119 A CG GLN 132 1 Y 1 A CD GLN 119 A CD GLN 132 1 Y 1 A OE1 GLN 119 A OE1 GLN 132 1 Y 1 A NE2 GLN 119 A NE2 GLN 132 1 Y 1 B CG TYR 73 B CG TYR 23 1 Y 1 B CD1 TYR 73 B CD1 TYR 23 1 Y 1 B CD2 TYR 73 B CD2 TYR 23 1 Y 1 B CE1 TYR 73 B CE1 TYR 23 1 Y 1 B CE2 TYR 73 B CE2 TYR 23 1 Y 1 B CZ TYR 73 B CZ TYR 23 1 Y 1 B OH TYR 73 B OH TYR 23 1 Y 1 A MET -12 A MET 1 1 Y 1 A GLY -11 A GLY 2 1 Y 1 A SER -10 A SER 3 1 Y 1 A HIS -9 A HIS 4 1 Y 1 A HIS -8 A HIS 5 1 Y 1 A HIS -7 A HIS 6 1 Y 1 A HIS -6 A HIS 7 1 Y 1 A HIS -5 A HIS 8 1 Y 1 A HIS -4 A HIS 9 1 Y 1 A SER -3 A SER 10 1 Y 1 A GLN -2 A GLN 11 1 Y 1 A ASP -1 A ASP 12 1 Y 1 A PRO 0 A PRO 13 1 Y 1 A ASN 157 A ASN 170 1 Y 1 A ILE 158 A ILE 171 1 Y 1 A PRO 159 A PRO 172 1 Y 1 A GLY 160 A GLY 173 1 Y 1 B ALA 74 B ALA 24 1 Y 1 B ARG 75 B ARG 25 1 Y 1 B ARG 76 B ARG 26 1 Y 1 B B ASP MET 51 52 -147.92 1 -9.03 1.50 119.30 110.27 A A A C N CA THR PRO PRO 36 37 37 Y 1 A A CB CG GLU GLU 43 43 0.120 0.019 1.517 1.637 N 1 A ALA 2 55.07 72.06 1 A PRO 37 -68.79 82.04 1 A LEU 38 -58.97 100.07 1 A HIS 92 -103.14 45.55 1 A ASP 95 67.51 170.85 1 B MET 52 108.00 -4.65 1 B TYR 72 150.67 33.70 36.80 1.01000 0.51000 0.00000 1.01000 0.00000 -1.52000 0.922 0.886 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 0.249 0.206 0.208 2.70 35.22 296 5792 4.900 99.1 29.204 0.265 RANDOM 1 THROUGHOUT SIRAS 0.346 0.80 0.80 1.40 NONE MAXIMUM LIKELIHOOD MASK 2.70 35.22 27 1473 5 0 1441 0.015 0.021 1476 1.663 1.933 2008 7.064 5.000 177 35.120 22.838 74 20.367 15.000 238 21.532 15.000 14 0.110 0.200 223 0.005 0.020 1132 0.248 0.200 749 0.303 0.200 1008 0.174 0.200 49 0.228 0.200 63 0.194 0.200 6 0.860 1.500 889 1.589 2.000 1432 1.741 3.000 587 2.885 4.500 576 0.3600 0.2940 2.77 24 375 20 92.58 2.70 35.22 2V6Q 6089 3.0 0.09 1 27.80 7.2 99.1 0.35 2.70 2.80 3.00 1 5.5 94.3 refinement REFMAC 5.2.0019 data reduction HKL-2000 data scaling HKL-2000 phasing HKL2MAP BHRF1 PROTEIN, BCL-2-LIKE PROTEIN 11 Crystal Structure of a BHRF-1 : Bim BH3 complex 1 N N 2 N N 3 N N 3 N N 3 N N 3 N N 3 N N 4 N N 4 N N A SER 4 A SER 17 HELX_P A VAL 19 A VAL 32 1 1 16 A HIS 26 A HIS 39 HELX_P A THR 36 A THR 49 1 2 11 A ASP 44 A ASP 57 HELX_P A ASN 61 A ASN 74 1 3 18 A ASN 61 A ASN 74 HELX_P A THR 76 A THR 89 1 4 16 A HIS 78 A HIS 91 HELX_P A HIS 92 A HIS 105 1 5 15 A SER 97 A SER 110 HELX_P A ASN 118 A ASN 131 1 6 22 A PRO 122 A PRO 135 HELX_P A GLU 138 A GLU 151 1 7 17 A LEU 140 A LEU 153 HELX_P A GLN 147 A GLN 160 1 8 8 A GLY 149 A GLY 162 HELX_P A ASP 156 A ASP 169 1 9 8 B ARG 53 B ARG 3 HELX_P B ALA 71 B ALA 21 1 10 19 APOPTOSIS ALTERNATIVE SPLICING, BCL-2, MEMBRANE, APOPTOSIS EAR_EBVB9 UNP 1 P03182 B2L11_HUMAN UNP 2 O43521 1 160 2V6Q 1 160 P03182 A 1 14 173 141 166 2V6Q 51 76 O43521 B 2 1 26 1 expression tag MET -12 2V6Q A P03182 UNP 1 1 expression tag GLY -11 2V6Q A P03182 UNP 2 1 expression tag SER -10 2V6Q A P03182 UNP 3 1 expression tag HIS -9 2V6Q A P03182 UNP 4 1 expression tag HIS -8 2V6Q A P03182 UNP 5 1 expression tag HIS -7 2V6Q A P03182 UNP 6 1 expression tag HIS -6 2V6Q A P03182 UNP 7 1 expression tag HIS -5 2V6Q A P03182 UNP 8 1 expression tag HIS -4 2V6Q A P03182 UNP 9 1 expression tag SER -3 2V6Q A P03182 UNP 10 1 expression tag GLN -2 2V6Q A P03182 UNP 11 1 expression tag ASP -1 2V6Q A P03182 UNP 12 1 expression tag PRO 0 2V6Q A P03182 UNP 13 BINDING SITE FOR RESIDUE BR A 1157 Software 3 BINDING SITE FOR RESIDUE BR A 1158 Software 2 BINDING SITE FOR RESIDUE BR A 1159 Software 2 BINDING SITE FOR RESIDUE BR A 1161 Software 3 BINDING SITE FOR RESIDUE BR A 1160 Software 3 A GLU 77 A GLU 90 3 1_555 A VAL 79 A VAL 92 3 1_555 A LEU 128 A LEU 141 3 1_555 A ARG 34 A ARG 47 2 4_655 A SER 62 A SER 75 2 1_555 A SER 41 A SER 54 2 1_555 A GLU 67 A GLU 80 2 4_545 A HIS 20 A HIS 33 3 3_665 A HIS 51 A HIS 64 3 3_665 A GLU 55 A GLU 68 3 3_665 A ARG 60 A ARG 73 3 1_555 A ASN 61 A ASN 74 3 1_555 B ILE 65 B ILE 15 3 1_555 154 P 32 2 1