0.026940
0.000000
0.011446
0.000000
0.026673
0.000000
0.000000
0.000000
0.035766
0.00000
0.00000
0.00000
Foerster, C.
Mankowska, M.
Fuerste, J.P.
Perbandt, M.
Betzel, C.
Erdmann, V.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
113.02
90.00
37.120
37.491
30.379
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
H2 O
18.015
WATER
non-polymer
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
US
Biochem.Biophys.Res.Commun.
BBRCA9
0146
0006-291X
368
996
10.1016/J.BBRC.2008.01.175
18279665
Crystal Structure of a Human Trnagly Microhelix at 1.2 A Resolution.
2008
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
0.8148
1.0
X13
EMBL/DESY, HAMBURG
0.8148
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE X13
2253.379
HUMAN TRNAGLY MICROHELIX
1
syn
polymer
2179.387
HUMAN TRNAGLY MICROHELIX
1
syn
polymer
18.015
water
85
nat
water
no
no
GCGUUGG
GCGUUGG
A
polyribonucleotide
no
no
CCAACGC
CCAACGC
B
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
2.33
59.4
NONE
40 MM SODIUM CACODYLATE, PH 6.0, 12 MM SPERMINE TETRA-HCL, 12 MM SODIUM CHLORIDE, 80 MM POTASSIUM CHLORIDE, 10% (V/V) MPD, EQUILIBRATED AGAINST 35% (V/V) MPD AT ROOM TEMPERATURE
0.533
1
19
A
1
B
72
-0.607
A_G1:C72_B
1
-5.141
-0.432
0.111
-0.201
6.022
1
19
A
2
B
71
-0.560
A_C2:G71_B
2
-10.743
0.119
-0.050
-0.124
-0.198
1
19
A
3
B
70
3.846
A_G3:C70_B
3
-14.937
-0.147
0.002
-0.156
-2.479
1
20
A
4
B
69
1.119
A_U4:A69_B
4
-21.853
-0.048
-0.042
-0.123
-3.361
1
20
A
5
B
68
-1.104
A_U5:A68_B
5
-10.769
-0.106
0.086
-0.103
-3.594
1
19
A
6
B
67
-2.177
A_G6:C67_B
6
-9.584
-0.246
-0.144
-0.178
-1.950
1
19
A
7
B
66
1.406
A_G7:C66_B
7
-5.622
-0.404
-0.037
-0.208
3.049
34.452
A
A
1
2
2.913
B
B
72
71
3.141
1.725
-0.289
-1.903
AA_G1C2:G71C72_BB
1
-0.491
0.830
34.407
-3.467
0.416
2.487
33.088
A
A
2
3
23.596
B
B
71
70
3.284
13.089
-0.306
-1.417
AA_C2G3:C70G71_BB
2
-0.633
1.141
30.450
-4.524
0.439
2.899
33.430
A
A
3
4
16.487
B
B
70
69
3.301
9.361
0.072
-1.012
AA_G3U4:A69C70_BB
3
1.557
-2.742
32.092
-3.258
0.124
3.032
34.963
A
A
4
5
9.204
B
B
69
68
3.238
5.507
-0.065
-1.103
AA_U4U5:A68A69_BB
4
-1.191
1.990
34.520
-2.637
-0.064
2.827
30.841
A
A
5
6
13.609
B
B
68
67
3.269
7.174
-0.381
-1.576
AA_U5G6:C67A68_BB
5
-0.135
0.257
30.014
-4.284
0.691
2.772
29.469
A
A
6
7
14.551
B
B
67
66
3.307
7.327
0.798
-1.873
AA_G6G7:C66C67_BB
6
0.846
-1.681
28.551
-5.160
-1.399
diffrn_source
repository
Initial release
Version format compliance
Version format compliance
Data collection
1
0
2008-03-18
1
1
2011-05-08
1
2
2011-07-13
1
3
2019-07-24
_diffrn_source.pdbx_synchrotron_site
PDBE
Y
PDBE
2007-08-01
REL
1
B
O
HOH
2003
6.66
HOH
water
9606
HUMAN
HOMO SAPIENS
sample
9606
HUMAN
HOMO SAPIENS
sample
HOH
2001
3
HOH
HOH
2001
A
HOH
2002
3
HOH
HOH
2002
A
HOH
2003
3
HOH
HOH
2003
A
HOH
2004
3
HOH
HOH
2004
A
HOH
2005
3
HOH
HOH
2005
A
HOH
2006
3
HOH
HOH
2006
A
HOH
2007
3
HOH
HOH
2007
A
HOH
2008
3
HOH
HOH
2008
A
HOH
2009
3
HOH
HOH
2009
A
HOH
2010
3
HOH
HOH
2010
A
HOH
2011
3
HOH
HOH
2011
A
HOH
2012
3
HOH
HOH
2012
A
HOH
2013
3
HOH
HOH
2013
A
HOH
2014
3
HOH
HOH
2014
A
HOH
2015
3
HOH
HOH
2015
A
HOH
2016
3
HOH
HOH
2016
A
HOH
2017
3
HOH
HOH
2017
A
HOH
2018
3
HOH
HOH
2018
A
HOH
2019
3
HOH
HOH
2019
A
HOH
2020
3
HOH
HOH
2020
A
HOH
2021
3
HOH
HOH
2021
A
HOH
2022
3
HOH
HOH
2022
A
HOH
2023
3
HOH
HOH
2023
A
HOH
2024
3
HOH
HOH
2024
A
HOH
2025
3
HOH
HOH
2025
A
HOH
2026
3
HOH
HOH
2026
A
HOH
2027
3
HOH
HOH
2027
A
HOH
2028
3
HOH
HOH
2028
A
HOH
2029
3
HOH
HOH
2029
A
HOH
2030
3
HOH
HOH
2030
A
HOH
2031
3
HOH
HOH
2031
A
HOH
2032
3
HOH
HOH
2032
A
HOH
2033
3
HOH
HOH
2033
A
HOH
2034
3
HOH
HOH
2034
A
HOH
2035
3
HOH
HOH
2035
A
HOH
2036
3
HOH
HOH
2036
A
HOH
2037
3
HOH
HOH
2037
A
HOH
2038
3
HOH
HOH
2038
A
HOH
2039
3
HOH
HOH
2039
A
HOH
2040
3
HOH
HOH
2040
A
HOH
2041
3
HOH
HOH
2041
A
HOH
2042
3
HOH
HOH
2042
A
HOH
2043
3
HOH
HOH
2043
A
HOH
2001
3
HOH
HOH
2001
B
HOH
2002
3
HOH
HOH
2002
B
HOH
2003
3
HOH
HOH
2003
B
HOH
2004
3
HOH
HOH
2004
B
HOH
2005
3
HOH
HOH
2005
B
HOH
2006
3
HOH
HOH
2006
B
HOH
2007
3
HOH
HOH
2007
B
HOH
2008
3
HOH
HOH
2008
B
HOH
2009
3
HOH
HOH
2009
B
HOH
2010
3
HOH
HOH
2010
B
HOH
2011
3
HOH
HOH
2011
B
HOH
2012
3
HOH
HOH
2012
B
HOH
2013
3
HOH
HOH
2013
B
HOH
2014
3
HOH
HOH
2014
B
HOH
2015
3
HOH
HOH
2015
B
HOH
2016
3
HOH
HOH
2016
B
HOH
2017
3
HOH
HOH
2017
B
HOH
2018
3
HOH
HOH
2018
B
HOH
2019
3
HOH
HOH
2019
B
HOH
2020
3
HOH
HOH
2020
B
HOH
2021
3
HOH
HOH
2021
B
HOH
2022
3
HOH
HOH
2022
B
HOH
2023
3
HOH
HOH
2023
B
HOH
2024
3
HOH
HOH
2024
B
HOH
2025
3
HOH
HOH
2025
B
HOH
2026
3
HOH
HOH
2026
B
HOH
2027
3
HOH
HOH
2027
B
HOH
2028
3
HOH
HOH
2028
B
HOH
2029
3
HOH
HOH
2029
B
HOH
2030
3
HOH
HOH
2030
B
HOH
2031
3
HOH
HOH
2031
B
HOH
2032
3
HOH
HOH
2032
B
HOH
2033
3
HOH
HOH
2033
B
HOH
2034
3
HOH
HOH
2034
B
HOH
2035
3
HOH
HOH
2035
B
HOH
2036
3
HOH
HOH
2036
B
HOH
2037
3
HOH
HOH
2037
B
HOH
2038
3
HOH
HOH
2038
B
HOH
2039
3
HOH
HOH
2039
B
HOH
2040
3
HOH
HOH
2040
B
HOH
2041
3
HOH
HOH
2041
B
HOH
2042
3
HOH
HOH
2042
B
G
1
n
1
G
1
A
C
2
n
2
C
2
A
G
3
n
3
G
3
A
U
4
n
4
U
4
A
U
5
n
5
U
5
A
G
6
n
6
G
6
A
G
7
n
7
G
7
A
C
66
n
1
C
66
B
C
67
n
2
C
67
B
A
68
n
3
A
68
B
A
69
n
4
A
69
B
C
70
n
5
C
70
B
G
71
n
6
G
71
B
C
72
n
7
C
72
B
software_defined_assembly
PQS
2
dimeric
770
0.0
3130
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
B
HOH
2024
D
HOH
1
3.88
0.60
125.90
129.78
A
A
A
C5
C4
O4
U
U
U
4
4
4
N
1
-3.17
0.50
110.60
107.43
B
B
B
C2
N3
C4
A
A
A
69
69
69
N
1
-3.01
0.50
103.90
100.89
B
B
B
C5
N7
C8
A
A
A
69
69
69
N
1
2.65
0.40
105.80
108.45
B
B
B
C8
N9
C4
A
A
A
69
69
69
N
1
-2.47
0.40
105.80
103.33
B
B
B
N9
C4
C5
A
A
A
69
69
69
N
1
B
B
C5
N7
A
A
69
69
0.039
0.006
1.388
1.427
N
14.82
-0.01000
0.00000
-0.05000
-0.03000
0.00000
0.00000
0.954
0.944
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
0.208
0.187
0.188
1.20
14.08
568
10934
4.900
95.4
1.421
0.029
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.052
0.048
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
MASK
1.20
14.08
85
378
0
293
0
0.010
0.021
326
1.712
3.000
505
0.062
0.200
56
0.014
0.020
145
0.165
0.200
126
0.274
0.200
226
0.121
0.200
74
0.113
0.200
38
0.146
0.200
18
2.395
3.000
468
2.604
4.500
505
0.2230
0.1880
1.23
40
775
20
1.20
50.00
2V7R
11547
2.0
0.05
1
18.10
7.2
95.3
0.24
1.20
1.22
1
7.6
93.7
refinement
REFMAC
5.2.0019
5'-R(*GP*CP*GP*UP*UP*GP*G)-3'
Crystal structure of a human tRNAGly microhelix at 1.2 Angstrom resolution
1
N
N
2
N
N
3
N
N
3
N
N
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
B
C
72
B
N3
C
7
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
B
C
72
B
O2
C
7
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
B
C
72
B
N4
C
7
1_555
hydrog
WATSON-CRICK
A
C
2
A
N3
C
2
1_555
B
G
71
B
N1
G
6
1_555
hydrog
WATSON-CRICK
A
C
2
A
N4
C
2
1_555
B
G
71
B
O6
G
6
1_555
hydrog
WATSON-CRICK
A
C
2
A
O2
C
2
1_555
B
G
71
B
N2
G
6
1_555
hydrog
WATSON-CRICK
A
G
3
A
N1
G
3
1_555
B
C
70
B
N3
C
5
1_555
hydrog
WATSON-CRICK
A
G
3
A
N2
G
3
1_555
B
C
70
B
O2
C
5
1_555
hydrog
WATSON-CRICK
A
G
3
A
O6
G
3
1_555
B
C
70
B
N4
C
5
1_555
hydrog
WATSON-CRICK
A
U
4
A
N3
U
4
1_555
B
A
69
B
N1
A
4
1_555
hydrog
WATSON-CRICK
A
U
4
A
O4
U
4
1_555
B
A
69
B
N6
A
4
1_555
hydrog
WATSON-CRICK
A
U
5
A
N3
U
5
1_555
B
A
68
B
N1
A
3
1_555
hydrog
WATSON-CRICK
A
U
5
A
O4
U
5
1_555
B
A
68
B
N6
A
3
1_555
hydrog
WATSON-CRICK
A
G
6
A
N1
G
6
1_555
B
C
67
B
N3
C
2
1_555
hydrog
WATSON-CRICK
A
G
6
A
N2
G
6
1_555
B
C
67
B
O2
C
2
1_555
hydrog
WATSON-CRICK
A
G
6
A
O6
G
6
1_555
B
C
67
B
N4
C
2
1_555
hydrog
WATSON-CRICK
A
G
7
A
N1
G
7
1_555
B
C
66
B
N3
C
1
1_555
hydrog
WATSON-CRICK
A
G
7
A
N2
G
7
1_555
B
C
66
B
O2
C
1
1_555
hydrog
WATSON-CRICK
A
G
7
A
O6
G
7
1_555
B
C
66
B
N4
C
1
1_555
RNA
TRNA, ACCEPTOR STEM, GLYCINE, MICROHELIX, IDENTITY, HYDRATION, RNA
2V7R
PDB
1
2V7R
2V7R
PDB
2
2V7R
1
7
2V7R
1
7
2V7R
A
1
1
7
66
72
2V7R
66
72
2V7R
B
2
1
7
5
C 1 2 1