0.026940 0.000000 0.011446 0.000000 0.026673 0.000000 0.000000 0.000000 0.035766 0.00000 0.00000 0.00000 Foerster, C. Mankowska, M. Fuerste, J.P. Perbandt, M. Betzel, C. Erdmann, V.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 113.02 90.00 37.120 37.491 30.379 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking H2 O 18.015 WATER non-polymer C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking US Biochem.Biophys.Res.Commun. BBRCA9 0146 0006-291X 368 996 10.1016/J.BBRC.2008.01.175 18279665 Crystal Structure of a Human Trnagly Microhelix at 1.2 A Resolution. 2008 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD MARRESEARCH SINGLE WAVELENGTH M x-ray 1 0.8148 1.0 X13 EMBL/DESY, HAMBURG 0.8148 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 2253.379 HUMAN TRNAGLY MICROHELIX 1 syn polymer 2179.387 HUMAN TRNAGLY MICROHELIX 1 syn polymer 18.015 water 85 nat water no no GCGUUGG GCGUUGG A polyribonucleotide no no CCAACGC CCAACGC B polyribonucleotide n n n n n n n n n n n n n n 2.33 59.4 NONE 40 MM SODIUM CACODYLATE, PH 6.0, 12 MM SPERMINE TETRA-HCL, 12 MM SODIUM CHLORIDE, 80 MM POTASSIUM CHLORIDE, 10% (V/V) MPD, EQUILIBRATED AGAINST 35% (V/V) MPD AT ROOM TEMPERATURE 0.533 1 19 A 1 B 72 -0.607 A_G1:C72_B 1 -5.141 -0.432 0.111 -0.201 6.022 1 19 A 2 B 71 -0.560 A_C2:G71_B 2 -10.743 0.119 -0.050 -0.124 -0.198 1 19 A 3 B 70 3.846 A_G3:C70_B 3 -14.937 -0.147 0.002 -0.156 -2.479 1 20 A 4 B 69 1.119 A_U4:A69_B 4 -21.853 -0.048 -0.042 -0.123 -3.361 1 20 A 5 B 68 -1.104 A_U5:A68_B 5 -10.769 -0.106 0.086 -0.103 -3.594 1 19 A 6 B 67 -2.177 A_G6:C67_B 6 -9.584 -0.246 -0.144 -0.178 -1.950 1 19 A 7 B 66 1.406 A_G7:C66_B 7 -5.622 -0.404 -0.037 -0.208 3.049 34.452 A A 1 2 2.913 B B 72 71 3.141 1.725 -0.289 -1.903 AA_G1C2:G71C72_BB 1 -0.491 0.830 34.407 -3.467 0.416 2.487 33.088 A A 2 3 23.596 B B 71 70 3.284 13.089 -0.306 -1.417 AA_C2G3:C70G71_BB 2 -0.633 1.141 30.450 -4.524 0.439 2.899 33.430 A A 3 4 16.487 B B 70 69 3.301 9.361 0.072 -1.012 AA_G3U4:A69C70_BB 3 1.557 -2.742 32.092 -3.258 0.124 3.032 34.963 A A 4 5 9.204 B B 69 68 3.238 5.507 -0.065 -1.103 AA_U4U5:A68A69_BB 4 -1.191 1.990 34.520 -2.637 -0.064 2.827 30.841 A A 5 6 13.609 B B 68 67 3.269 7.174 -0.381 -1.576 AA_U5G6:C67A68_BB 5 -0.135 0.257 30.014 -4.284 0.691 2.772 29.469 A A 6 7 14.551 B B 67 66 3.307 7.327 0.798 -1.873 AA_G6G7:C66C67_BB 6 0.846 -1.681 28.551 -5.160 -1.399 diffrn_source repository Initial release Version format compliance Version format compliance Data collection 1 0 2008-03-18 1 1 2011-05-08 1 2 2011-07-13 1 3 2019-07-24 _diffrn_source.pdbx_synchrotron_site PDBE Y PDBE 2007-08-01 REL 1 B O HOH 2003 6.66 HOH water 9606 HUMAN HOMO SAPIENS sample 9606 HUMAN HOMO SAPIENS sample HOH 2001 3 HOH HOH 2001 A HOH 2002 3 HOH HOH 2002 A HOH 2003 3 HOH HOH 2003 A HOH 2004 3 HOH HOH 2004 A HOH 2005 3 HOH HOH 2005 A HOH 2006 3 HOH HOH 2006 A HOH 2007 3 HOH HOH 2007 A HOH 2008 3 HOH HOH 2008 A HOH 2009 3 HOH HOH 2009 A HOH 2010 3 HOH HOH 2010 A HOH 2011 3 HOH HOH 2011 A HOH 2012 3 HOH HOH 2012 A HOH 2013 3 HOH HOH 2013 A HOH 2014 3 HOH HOH 2014 A HOH 2015 3 HOH HOH 2015 A HOH 2016 3 HOH HOH 2016 A HOH 2017 3 HOH HOH 2017 A HOH 2018 3 HOH HOH 2018 A HOH 2019 3 HOH HOH 2019 A HOH 2020 3 HOH HOH 2020 A HOH 2021 3 HOH HOH 2021 A HOH 2022 3 HOH HOH 2022 A HOH 2023 3 HOH HOH 2023 A HOH 2024 3 HOH HOH 2024 A HOH 2025 3 HOH HOH 2025 A HOH 2026 3 HOH HOH 2026 A HOH 2027 3 HOH HOH 2027 A HOH 2028 3 HOH HOH 2028 A HOH 2029 3 HOH HOH 2029 A HOH 2030 3 HOH HOH 2030 A HOH 2031 3 HOH HOH 2031 A HOH 2032 3 HOH HOH 2032 A HOH 2033 3 HOH HOH 2033 A HOH 2034 3 HOH HOH 2034 A HOH 2035 3 HOH HOH 2035 A HOH 2036 3 HOH HOH 2036 A HOH 2037 3 HOH HOH 2037 A HOH 2038 3 HOH HOH 2038 A HOH 2039 3 HOH HOH 2039 A HOH 2040 3 HOH HOH 2040 A HOH 2041 3 HOH HOH 2041 A HOH 2042 3 HOH HOH 2042 A HOH 2043 3 HOH HOH 2043 A HOH 2001 3 HOH HOH 2001 B HOH 2002 3 HOH HOH 2002 B HOH 2003 3 HOH HOH 2003 B HOH 2004 3 HOH HOH 2004 B HOH 2005 3 HOH HOH 2005 B HOH 2006 3 HOH HOH 2006 B HOH 2007 3 HOH HOH 2007 B HOH 2008 3 HOH HOH 2008 B HOH 2009 3 HOH HOH 2009 B HOH 2010 3 HOH HOH 2010 B HOH 2011 3 HOH HOH 2011 B HOH 2012 3 HOH HOH 2012 B HOH 2013 3 HOH HOH 2013 B HOH 2014 3 HOH HOH 2014 B HOH 2015 3 HOH HOH 2015 B HOH 2016 3 HOH HOH 2016 B HOH 2017 3 HOH HOH 2017 B HOH 2018 3 HOH HOH 2018 B HOH 2019 3 HOH HOH 2019 B HOH 2020 3 HOH HOH 2020 B HOH 2021 3 HOH HOH 2021 B HOH 2022 3 HOH HOH 2022 B HOH 2023 3 HOH HOH 2023 B HOH 2024 3 HOH HOH 2024 B HOH 2025 3 HOH HOH 2025 B HOH 2026 3 HOH HOH 2026 B HOH 2027 3 HOH HOH 2027 B HOH 2028 3 HOH HOH 2028 B HOH 2029 3 HOH HOH 2029 B HOH 2030 3 HOH HOH 2030 B HOH 2031 3 HOH HOH 2031 B HOH 2032 3 HOH HOH 2032 B HOH 2033 3 HOH HOH 2033 B HOH 2034 3 HOH HOH 2034 B HOH 2035 3 HOH HOH 2035 B HOH 2036 3 HOH HOH 2036 B HOH 2037 3 HOH HOH 2037 B HOH 2038 3 HOH HOH 2038 B HOH 2039 3 HOH HOH 2039 B HOH 2040 3 HOH HOH 2040 B HOH 2041 3 HOH HOH 2041 B HOH 2042 3 HOH HOH 2042 B G 1 n 1 G 1 A C 2 n 2 C 2 A G 3 n 3 G 3 A U 4 n 4 U 4 A U 5 n 5 U 5 A G 6 n 6 G 6 A G 7 n 7 G 7 A C 66 n 1 C 66 B C 67 n 2 C 67 B A 68 n 3 A 68 B A 69 n 4 A 69 B C 70 n 5 C 70 B G 71 n 6 G 71 B C 72 n 7 C 72 B software_defined_assembly PQS 2 dimeric 770 0.0 3130 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 B HOH 2024 D HOH 1 3.88 0.60 125.90 129.78 A A A C5 C4 O4 U U U 4 4 4 N 1 -3.17 0.50 110.60 107.43 B B B C2 N3 C4 A A A 69 69 69 N 1 -3.01 0.50 103.90 100.89 B B B C5 N7 C8 A A A 69 69 69 N 1 2.65 0.40 105.80 108.45 B B B C8 N9 C4 A A A 69 69 69 N 1 -2.47 0.40 105.80 103.33 B B B N9 C4 C5 A A A 69 69 69 N 1 B B C5 N7 A A 69 69 0.039 0.006 1.388 1.427 N 14.82 -0.01000 0.00000 -0.05000 -0.03000 0.00000 0.00000 0.954 0.944 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 0.208 0.187 0.188 1.20 14.08 568 10934 4.900 95.4 1.421 0.029 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.052 0.048 0.80 0.80 1.20 MAXIMUM LIKELIHOOD MASK 1.20 14.08 85 378 0 293 0 0.010 0.021 326 1.712 3.000 505 0.062 0.200 56 0.014 0.020 145 0.165 0.200 126 0.274 0.200 226 0.121 0.200 74 0.113 0.200 38 0.146 0.200 18 2.395 3.000 468 2.604 4.500 505 0.2230 0.1880 1.23 40 775 20 1.20 50.00 2V7R 11547 2.0 0.05 1 18.10 7.2 95.3 0.24 1.20 1.22 1 7.6 93.7 refinement REFMAC 5.2.0019 5'-R(*GP*CP*GP*UP*UP*GP*G)-3' Crystal structure of a human tRNAGly microhelix at 1.2 Angstrom resolution 1 N N 2 N N 3 N N 3 N N hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 B C 72 B N3 C 7 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 B C 72 B O2 C 7 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 B C 72 B N4 C 7 1_555 hydrog WATSON-CRICK A C 2 A N3 C 2 1_555 B G 71 B N1 G 6 1_555 hydrog WATSON-CRICK A C 2 A N4 C 2 1_555 B G 71 B O6 G 6 1_555 hydrog WATSON-CRICK A C 2 A O2 C 2 1_555 B G 71 B N2 G 6 1_555 hydrog WATSON-CRICK A G 3 A N1 G 3 1_555 B C 70 B N3 C 5 1_555 hydrog WATSON-CRICK A G 3 A N2 G 3 1_555 B C 70 B O2 C 5 1_555 hydrog WATSON-CRICK A G 3 A O6 G 3 1_555 B C 70 B N4 C 5 1_555 hydrog WATSON-CRICK A U 4 A N3 U 4 1_555 B A 69 B N1 A 4 1_555 hydrog WATSON-CRICK A U 4 A O4 U 4 1_555 B A 69 B N6 A 4 1_555 hydrog WATSON-CRICK A U 5 A N3 U 5 1_555 B A 68 B N1 A 3 1_555 hydrog WATSON-CRICK A U 5 A O4 U 5 1_555 B A 68 B N6 A 3 1_555 hydrog WATSON-CRICK A G 6 A N1 G 6 1_555 B C 67 B N3 C 2 1_555 hydrog WATSON-CRICK A G 6 A N2 G 6 1_555 B C 67 B O2 C 2 1_555 hydrog WATSON-CRICK A G 6 A O6 G 6 1_555 B C 67 B N4 C 2 1_555 hydrog WATSON-CRICK A G 7 A N1 G 7 1_555 B C 66 B N3 C 1 1_555 hydrog WATSON-CRICK A G 7 A N2 G 7 1_555 B C 66 B O2 C 1 1_555 hydrog WATSON-CRICK A G 7 A O6 G 7 1_555 B C 66 B N4 C 1 1_555 RNA TRNA, ACCEPTOR STEM, GLYCINE, MICROHELIX, IDENTITY, HYDRATION, RNA 2V7R PDB 1 2V7R 2V7R PDB 2 2V7R 1 7 2V7R 1 7 2V7R A 1 1 7 66 72 2V7R 66 72 2V7R B 2 1 7 5 C 1 2 1