0.025114
0.000000
0.000000
0.000000
0.024757
0.000000
0.000000
0.000000
0.022374
0.00000
0.00000
0.00000
Debreczeni, J.E.
Pal, A.
Kahle, B.
Zeeck, A.
Sheldrick, G.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
39.819
40.392
44.694
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
DK
Acta Crystallogr. D Biol. Crystallogr.
ABCRE6
0766
0907-4449
64
985
992
10.1107/S0907444908022646
18703848
Structures of viscotoxins A1 and B2 from European mistletoe solved using native data alone.
2008
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2003-05-15
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
0.98
1.0
X13
EMBL/DESY, HAMBURG
0.98
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE X13
4865.536
VISCOTOXIN-B
YES
2
nat
polymer
96.063
SULFATE ION
6
syn
non-polymer
18.015
water
106
nat
water
VISCOTOXIN B2
no
no
KSCCPNTTGRDIYNTCRLGGGSRERCASLSGCKIISASTCPSDYPK
KSCCPNTTGRDIYNTCRLGGGSRERCASLSGCKIISASTCPSDYPK
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
EUROPEAN MISTLETOE
sample
3972
VISCUM ALBUM
1
1.7
30
NONE
VAPOR DIFFUSION, HANGING DROP
6.5
1UL HANGING DROP, 30 MG/ML PROTEIN, 0.2M AMSO4, 0.08M CACODYLATE PH 6.5, 25% PEG20000
citation
diffrn_source
struct
struct_ref_seq_dif
database_PDB_rev
database_PDB_rev_record
exptl_crystal_grow
diffrn_source
diffrn_source
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Structure summary
Data collection
Experimental preparation
Data collection
Data collection
1
0
2008-06-17
1
1
2011-05-08
1
2
2011-07-13
1
3
2018-10-24
1
4
2019-05-08
1
5
2019-07-10
1
6
2019-07-24
_citation.journal_abbrev
_citation.page_last
_citation.title
_diffrn_source.pdbx_synchrotron_site
_struct.title
_struct_ref_seq_dif.details
_exptl_crystal_grow.method
_diffrn_source.pdbx_synchrotron_site
_diffrn_source.pdbx_synchrotron_site
SOLUTION STRUCTURE OF THE VISCOTOXIN B
1H NMR STRUCTURE DETERMINATION OF VISCOTOXIN C1
PDBE
Y
PDBE
2007-08-23
REL
SO4
SULFATE ION
HOH
water
ENGINEERED RESIDUE IN CHAIN A, ASN 17 TO ASP
ENGINEERED RESIDUE IN CHAIN B, ASN 17 TO ASP
N11D KNOWN ISOFORM MUTATION
SO4
1047
2
SO4
SO4
1047
A
SO4
1048
2
SO4
SO4
1048
A
SO4
1049
2
SO4
SO4
1049
A
SO4
1050
2
SO4
SO4
1050
A
SO4
1047
2
SO4
SO4
1047
B
SO4
1048
2
SO4
SO4
1048
B
HOH
2001
3
HOH
HOH
2001
A
HOH
2002
3
HOH
HOH
2002
A
HOH
2003
3
HOH
HOH
2003
A
HOH
2004
3
HOH
HOH
2004
A
HOH
2005
3
HOH
HOH
2005
A
HOH
2006
3
HOH
HOH
2006
A
HOH
2007
3
HOH
HOH
2007
A
HOH
2008
3
HOH
HOH
2008
A
HOH
2009
3
HOH
HOH
2009
A
HOH
2010
3
HOH
HOH
2010
A
HOH
2011
3
HOH
HOH
2011
A
HOH
2012
3
HOH
HOH
2012
A
HOH
2013
3
HOH
HOH
2013
A
HOH
2014
3
HOH
HOH
2014
A
HOH
2015
3
HOH
HOH
2015
A
HOH
2016
3
HOH
HOH
2016
A
HOH
2017
3
HOH
HOH
2017
A
HOH
2018
3
HOH
HOH
2018
A
HOH
2019
3
HOH
HOH
2019
A
HOH
2020
3
HOH
HOH
2020
A
HOH
2021
3
HOH
HOH
2021
A
HOH
2022
3
HOH
HOH
2022
A
HOH
2023
3
HOH
HOH
2023
A
HOH
2024
3
HOH
HOH
2024
A
HOH
2025
3
HOH
HOH
2025
A
HOH
2026
3
HOH
HOH
2026
A
HOH
2027
3
HOH
HOH
2027
A
HOH
2028
3
HOH
HOH
2028
A
HOH
2029
3
HOH
HOH
2029
A
HOH
2030
3
HOH
HOH
2030
A
HOH
2031
3
HOH
HOH
2031
A
HOH
2032
3
HOH
HOH
2032
A
HOH
2033
3
HOH
HOH
2033
A
HOH
2034
3
HOH
HOH
2034
A
HOH
2035
3
HOH
HOH
2035
A
HOH
2036
3
HOH
HOH
2036
A
HOH
2037
3
HOH
HOH
2037
A
HOH
2038
3
HOH
HOH
2038
A
HOH
2039
3
HOH
HOH
2039
A
HOH
2040
3
HOH
HOH
2040
A
HOH
2041
3
HOH
HOH
2041
A
HOH
2042
3
HOH
HOH
2042
A
HOH
2043
3
HOH
HOH
2043
A
HOH
2044
3
HOH
HOH
2044
A
HOH
2045
3
HOH
HOH
2045
A
HOH
2046
3
HOH
HOH
2046
A
HOH
2047
3
HOH
HOH
2047
A
HOH
2048
3
HOH
HOH
2048
A
HOH
2049
3
HOH
HOH
2049
A
HOH
2050
3
HOH
HOH
2050
A
HOH
2051
3
HOH
HOH
2051
A
HOH
2052
3
HOH
HOH
2052
A
HOH
2053
3
HOH
HOH
2053
A
HOH
2054
3
HOH
HOH
2054
A
HOH
2001
3
HOH
HOH
2001
B
HOH
2002
3
HOH
HOH
2002
B
HOH
2003
3
HOH
HOH
2003
B
HOH
2004
3
HOH
HOH
2004
B
HOH
2005
3
HOH
HOH
2005
B
HOH
2006
3
HOH
HOH
2006
B
HOH
2007
3
HOH
HOH
2007
B
HOH
2008
3
HOH
HOH
2008
B
HOH
2009
3
HOH
HOH
2009
B
HOH
2010
3
HOH
HOH
2010
B
HOH
2011
3
HOH
HOH
2011
B
HOH
2012
3
HOH
HOH
2012
B
HOH
2013
3
HOH
HOH
2013
B
HOH
2014
3
HOH
HOH
2014
B
HOH
2015
3
HOH
HOH
2015
B
HOH
2016
3
HOH
HOH
2016
B
HOH
2017
3
HOH
HOH
2017
B
HOH
2018
3
HOH
HOH
2018
B
HOH
2019
3
HOH
HOH
2019
B
HOH
2020
3
HOH
HOH
2020
B
HOH
2021
3
HOH
HOH
2021
B
HOH
2022
3
HOH
HOH
2022
B
HOH
2023
3
HOH
HOH
2023
B
HOH
2024
3
HOH
HOH
2024
B
HOH
2025
3
HOH
HOH
2025
B
HOH
2026
3
HOH
HOH
2026
B
HOH
2027
3
HOH
HOH
2027
B
HOH
2028
3
HOH
HOH
2028
B
HOH
2029
3
HOH
HOH
2029
B
HOH
2030
3
HOH
HOH
2030
B
HOH
2031
3
HOH
HOH
2031
B
HOH
2032
3
HOH
HOH
2032
B
HOH
2033
3
HOH
HOH
2033
B
HOH
2034
3
HOH
HOH
2034
B
HOH
2035
3
HOH
HOH
2035
B
HOH
2036
3
HOH
HOH
2036
B
HOH
2037
3
HOH
HOH
2037
B
HOH
2038
3
HOH
HOH
2038
B
HOH
2039
3
HOH
HOH
2039
B
HOH
2040
3
HOH
HOH
2040
B
HOH
2041
3
HOH
HOH
2041
B
HOH
2042
3
HOH
HOH
2042
B
HOH
2043
3
HOH
HOH
2043
B
HOH
2044
3
HOH
HOH
2044
B
HOH
2045
3
HOH
HOH
2045
B
HOH
2046
3
HOH
HOH
2046
B
HOH
2047
3
HOH
HOH
2047
B
HOH
2048
3
HOH
HOH
2048
B
HOH
2049
3
HOH
HOH
2049
B
HOH
2050
3
HOH
HOH
2050
B
HOH
2051
3
HOH
HOH
2051
B
HOH
2052
3
HOH
HOH
2052
B
LYS
1
n
1
LYS
1
A
SER
2
n
2
SER
2
A
CYS
3
n
3
CYS
3
A
CYS
4
n
4
CYS
4
A
PRO
5
n
5
PRO
5
A
ASN
6
n
6
ASN
6
A
THR
7
n
7
THR
7
A
THR
8
n
8
THR
8
A
GLY
9
n
9
GLY
9
A
ARG
10
n
10
ARG
10
A
ASP
11
n
11
ASP
11
A
ILE
12
n
12
ILE
12
A
TYR
13
n
13
TYR
13
A
ASN
14
n
14
ASN
14
A
THR
15
n
15
THR
15
A
CYS
16
n
16
CYS
16
A
ARG
17
n
17
ARG
17
A
LEU
18
n
18
LEU
18
A
GLY
19
n
19
GLY
19
A
GLY
20
n
20
GLY
20
A
GLY
21
n
21
GLY
21
A
SER
22
n
22
SER
22
A
ARG
23
n
23
ARG
23
A
GLU
24
n
24
GLU
24
A
ARG
25
n
25
ARG
25
A
CYS
26
n
26
CYS
26
A
ALA
27
n
27
ALA
27
A
SER
28
n
28
SER
28
A
LEU
29
n
29
LEU
29
A
SER
30
n
30
SER
30
A
GLY
31
n
31
GLY
31
A
CYS
32
n
32
CYS
32
A
LYS
33
n
33
LYS
33
A
ILE
34
n
34
ILE
34
A
ILE
35
n
35
ILE
35
A
SER
36
n
36
SER
36
A
ALA
37
n
37
ALA
37
A
SER
38
n
38
SER
38
A
THR
39
n
39
THR
39
A
CYS
40
n
40
CYS
40
A
PRO
41
n
41
PRO
41
A
SER
42
n
42
SER
42
A
ASP
43
n
43
ASP
43
A
TYR
44
n
44
TYR
44
A
PRO
45
n
45
PRO
45
A
LYS
46
n
46
LYS
46
A
LYS
1
n
1
LYS
1
B
SER
2
n
2
SER
2
B
CYS
3
n
3
CYS
3
B
CYS
4
n
4
CYS
4
B
PRO
5
n
5
PRO
5
B
ASN
6
n
6
ASN
6
B
THR
7
n
7
THR
7
B
THR
8
n
8
THR
8
B
GLY
9
n
9
GLY
9
B
ARG
10
n
10
ARG
10
B
ASP
11
n
11
ASP
11
B
ILE
12
n
12
ILE
12
B
TYR
13
n
13
TYR
13
B
ASN
14
n
14
ASN
14
B
THR
15
n
15
THR
15
B
CYS
16
n
16
CYS
16
B
ARG
17
n
17
ARG
17
B
LEU
18
n
18
LEU
18
B
GLY
19
n
19
GLY
19
B
GLY
20
n
20
GLY
20
B
GLY
21
n
21
GLY
21
B
SER
22
n
22
SER
22
B
ARG
23
n
23
ARG
23
B
GLU
24
n
24
GLU
24
B
ARG
25
n
25
ARG
25
B
CYS
26
n
26
CYS
26
B
ALA
27
n
27
ALA
27
B
SER
28
n
28
SER
28
B
LEU
29
n
29
LEU
29
B
SER
30
n
30
SER
30
B
GLY
31
n
31
GLY
31
B
CYS
32
n
32
CYS
32
B
LYS
33
n
33
LYS
33
B
ILE
34
n
34
ILE
34
B
ILE
35
n
35
ILE
35
B
SER
36
n
36
SER
36
B
ALA
37
n
37
ALA
37
B
SER
38
n
38
SER
38
B
THR
39
n
39
THR
39
B
CYS
40
n
40
CYS
40
B
PRO
41
n
41
PRO
41
B
SER
42
n
42
SER
42
B
ASP
43
n
43
ASP
43
B
TYR
44
n
44
TYR
44
B
PRO
45
n
45
PRO
45
B
LYS
46
n
46
LYS
46
B
0.1223
0.1277
0.1649
0.1703
1619
1833
5
5
31043
author_and_software_defined_assembly
PQS
2
dimeric
970
-8.9
6550
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
CYS
3
A
N
CYS
3
A
O
LYS
33
A
O
LYS
33
B
N
CYS
3
B
N
CYS
3
B
O
LYS
33
B
O
LYS
33
1
B
CG
GLU
24
B
CG
GLU
24
1
Y
1
B
CD
GLU
24
B
CD
GLU
24
1
Y
1
B
OE1
GLU
24
B
OE1
GLU
24
1
Y
1
B
OE2
GLU
24
B
OE2
GLU
24
1
Y
1
6.80
1.10
119.40
126.20
A
A
A
NH1
CZ
NH2
ARG
ARG
ARG
10
10
10
N
1
-4.25
0.50
120.30
116.05
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
10
10
10
N
1
11.73
1.10
114.20
125.93
A
A
A
CA
CB
SG
CYS
CYS
CYS
16
16
16
B
N
1
-4.03
0.50
120.30
116.27
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
17
17
17
N
1
-12.18
1.80
114.00
101.82
A
A
A
CA
CB
SG
CYS
CYS
CYS
26
26
26
B
N
1
9.19
0.90
118.30
127.49
A
A
A
CB
CG
OD2
ASP
ASP
ASP
43
43
43
N
1
11.33
1.10
114.20
125.53
B
B
B
CA
CB
SG
CYS
CYS
CYS
16
16
16
B
N
1
4.37
0.50
120.30
124.67
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
17
17
17
N
1
-4.82
0.50
120.30
115.48
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
17
17
17
N
1
3.14
0.50
120.30
123.44
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
23
23
23
N
1
-5.20
0.50
120.30
115.10
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
23
23
23
N
1
6.75
0.90
118.30
125.05
B
B
B
CB
CG
OD1
ASP
ASP
ASP
43
43
43
N
1
A
A
CB
SG
CYS
CYS
16
16
-0.183
0.016
1.812
1.629
B
N
1
A
A
CB
SG
CYS
CYS
26
26
0.232
0.017
1.818
2.050
B
N
1
B
B
CB
SG
CYS
CYS
16
16
-0.163
0.016
1.812
1.649
B
N
1
B
B
CB
SG
CYS
CYS
32
32
0.117
0.017
1.818
1.935
B
N
1
B
SER
36
-96.69
44.24
HYDROGEN ATOMS WERE ADDED IN RIDING POSITIONS
0.1703
0.1277
1.05
40
7604
1833
35151
10158
5
99.8
RANDOM
1
THROUGHOUT
12
DIRECT METHODS
NONE
ENGH AND HUBER
14
646
795
1.05
40
106
800
30
0
664
0.019
0.034
0.016
0.0285
0.080
0.106
0.114
0.006
0.044
0.092
1.15
20.00
2V9B
34317
3.0
0.06
1
25.80
21.34
99.8
0.22
1.05
1.15
12.60
1
21
99.6
refinement
SHELXL-97
data reduction
DENZO
data scaling
SADABS
phasing
SHELXD
VISCOTOXIN-B
X-ray structure of viscotoxin B2 from Viscum album
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
A
ASN
6
A
ASN
6
HELX_P
A
GLY
19
A
GLY
19
1
1
14
A
SER
22
A
SER
22
HELX_P
A
GLY
31
A
GLY
31
1
2
10
B
ASN
6
B
ASN
6
HELX_P
B
GLY
19
B
GLY
19
1
3
14
B
SER
22
B
SER
22
HELX_P
B
GLY
31
B
GLY
31
1
4
10
disulf
2.025
A
CYS
3
A
SG
CYS
3
1_555
A
CYS
40
A
SG
CYS
40
1_555
disulf
2.039
A
CYS
4
A
SG
CYS
4
1_555
A
CYS
32
A
SG
CYS
32
1_555
disulf
2.085
A
CYS
16
A
SG
CYS
16
1_555
A
CYS
26
A
SG
CYS
26
1_555
disulf
1.984
B
CYS
3
B
SG
CYS
3
1_555
B
CYS
40
B
SG
CYS
40
1_555
disulf
2.039
B
CYS
4
B
SG
CYS
4
1_555
B
CYS
32
B
SG
CYS
32
1_555
disulf
2.006
B
CYS
16
B
SG
CYS
16
1_555
B
CYS
26
B
SG
CYS
26
1_555
TOXIN
TOXIN, THIONIN, SECRETED, PLANT TOXIN, PLANT DEFENSE
given
0.000009
0.991300
-0.131500
0.982700
0.024270
0.183700
0.185300
-0.129200
-0.974200
7.41900
-11.22000
5.43300
THNB_VISAL
UNP
1
P08943
7
52
2V9B
1
46
P08943
A
1
1
46
7
52
2V9B
1
46
P08943
B
1
1
46
1
ASN
variant
ASP
11
2V9B
A
P08943
UNP
17
11
2
ASN
variant
ASP
11
2V9B
B
P08943
UNP
17
11
2
2
anti-parallel
anti-parallel
A
SER
2
A
SER
2
A
CYS
3
A
CYS
3
A
LYS
33
A
LYS
33
A
ILE
34
A
ILE
34
B
SER
2
B
SER
2
B
CYS
3
B
CYS
3
B
LYS
33
B
LYS
33
B
ILE
34
B
ILE
34
BINDING SITE FOR RESIDUE SO4 A1047
Software
6
BINDING SITE FOR RESIDUE SO4 B1047
Software
4
BINDING SITE FOR RESIDUE SO4 A1048
Software
10
BINDING SITE FOR RESIDUE SO4 A1049
Software
11
BINDING SITE FOR RESIDUE SO4 B1048
Software
10
BINDING SITE FOR RESIDUE SO4 A1050
Software
7
A
GLY
21
A
GLY
21
6
1_555
A
SER
22
A
SER
22
6
1_555
A
ARG
25
A
ARG
25
6
1_555
A
HOH
2045
I
HOH
6
1_555
B
ARG
25
B
ARG
25
6
1_555
B
HOH
2040
J
HOH
6
1_555
B
GLY
21
B
GLY
21
4
1_555
B
SER
22
B
SER
22
4
1_555
B
ARG
25
B
ARG
25
4
1_555
B
HOH
2046
J
HOH
4
1_555
A
LYS
1
A
LYS
1
10
1_555
A
SER
2
A
SER
2
10
1_555
A
THR
7
A
THR
7
10
1_555
A
TYR
13
A
TYR
13
10
1_555
A
ARG
23
A
ARG
23
10
1_555
A
HOH
2011
I
HOH
10
1_555
A
HOH
2021
I
HOH
10
1_555
A
HOH
2046
I
HOH
10
1_555
A
HOH
2047
I
HOH
10
1_555
A
HOH
2048
I
HOH
10
1_555
A
ASN
6
A
ASN
6
11
1_555
A
THR
7
A
THR
7
11
1_555
A
ARG
23
A
ARG
23
11
1_555
A
LYS
46
A
LYS
46
11
1_555
A
HOH
2004
I
HOH
11
1_555
A
HOH
2009
I
HOH
11
1_555
A
HOH
2049
I
HOH
11
1_555
A
HOH
2050
I
HOH
11
1_555
A
HOH
2051
I
HOH
11
1_555
A
HOH
2052
I
HOH
11
1_555
B
HOH
2001
J
HOH
11
1_555
B
SER
2
B
SER
2
10
1_555
B
TYR
13
B
TYR
13
10
1_555
B
ARG
17
B
ARG
17
10
1_555
B
ARG
23
B
ARG
23
10
1_555
B
HOH
2023
J
HOH
10
1_555
B
HOH
2048
J
HOH
10
1_555
B
HOH
2049
J
HOH
10
1_555
B
HOH
2050
J
HOH
10
1_555
B
HOH
2051
J
HOH
10
1_555
B
HOH
2052
J
HOH
10
1_555
A
ARG
17
A
ARG
17
7
1_555
A
SER
22
A
SER
22
7
1_555
A
ARG
23
A
ARG
23
7
1_555
A
HOH
2023
I
HOH
7
1_555
A
HOH
2044
I
HOH
7
1_555
A
HOH
2053
I
HOH
7
1_555
A
HOH
2054
I
HOH
7
1_555
19
P 21 21 21