0.026413 0.000000 0.000000 0.000000 0.023529 0.000000 0.000000 0.000000 0.006653 0.00000 0.00000 0.00000 Cherezov, V. Liu, W. Derrick, J.P. Luan, B. Aksimentiev, A. Katritch, V. Caffrey, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 37.860 42.500 150.300 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C8 H18 114.229 N-OCTANE non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N C N 199 N N N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N C N 217 N C N 218 N C N 219 N C N 220 N C N 221 N C N 222 N C N 223 N C N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N N N 243 S C N 244 N C N 245 N O N 246 N C Y 247 N C Y 248 N C Y 249 N C Y 250 N C Y 251 N C Y 252 N C N 253 N O N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N N N 266 S C N 267 N C N 268 N O N 269 N C N 270 N C N 271 N C N 272 N O N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N N N 283 S C N 284 N C N 285 N O N 286 N C N 287 N O N 288 N O N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N S N 297 N O N 298 N O N 299 N O N 300 N O N 301 N N N 302 S C N 303 N C N 304 N O N 305 R C N 306 N O N 307 N C N 308 N O N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N N N 319 S C N 320 N C N 321 N O N 322 N C Y 323 N C Y 324 N C Y 325 N C Y 326 N N Y 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N C N 332 N O N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N N N 346 S C N 347 N C N 348 N O N 349 N C Y 350 N C Y 351 N C Y 352 N C Y 353 N C Y 354 N C Y 355 N C N 356 N O N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N N N 370 S C N 371 N C N 372 N O N 373 N C N 374 N C N 375 N C N 376 N O N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N doub N 237 N sing N 238 N sing N 239 N sing N 240 N sing Y 241 N doub Y 242 N sing Y 243 N sing N 244 N sing Y 245 N doub N 246 N sing Y 247 N doub N 248 N sing Y 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N doub N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N doub N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N doub N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N doub N 310 N sing N 311 N sing N 312 N sing N 313 N sing Y 314 N doub Y 315 N sing Y 316 N sing N 317 N sing Y 318 N doub Y 319 N sing Y 320 N sing N 321 N sing Y 322 N sing Y 323 N doub N 324 N sing Y 325 N doub N 326 N sing Y 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N doub N 338 N sing N 339 N sing N 340 N sing N 341 N sing Y 342 N doub Y 343 N sing Y 344 N sing N 345 N sing Y 346 N doub N 347 N sing Y 348 N doub N 349 N sing Y 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N doub N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing US Proteins PSFGEY 0867 1097-0134 71 24 34 10.1002/prot.21841 18076035 In meso crystal structure and docking simulations suggest an alternative proteoglycan binding site in the OpcA outer membrane adhesin. 2008 US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 99 3417 10.1073/PNAS.062630899 11891340 Crystal Structure of the Opca Integral Membrane Adhesin from Neisseria Meningitidis. 2002 10.2210/pdb2vdf/pdb pdb_00002vdf 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD ADSC CCD SINGLE WAVELENGTH M x-ray 1 0.9176 1.0 F1 CHESS 0.9176 SYNCHROTRON CHESS BEAMLINE F1 28092.643 OUTER MEMBRANE PROTEIN 1 man polymer 114.229 N-OCTANE 1 syn non-polymer 96.063 SULFATE ION 1 syn non-polymer 18.015 water 120 nat water OPCA no no AQELQTANEFTVHTDLSSISSTRAFLKEKHKAAKHIGVRADIPFDANQGIRLEAGFGRSKKNIINLETDENKLGKTKNVK LPTGVPENRIDLYTGYTYTQTLSDSLNFRVGAGLGFESSKDSIKTTKHTLHSSRQSWLAKVHADLLSQLGNGWYINPWSE VKFDLNSRYKLNTGVTNLKKDINQKTNGWGFGLGANIGKKLGESASIEAGPFYKQRTYKESGEFSVTTKSGDVSLTIPKT SIREYGLRVGIKF AQELQTANEFTVHTDLSSISSTRAFLKEKHKAAKHIGVRADIPFDANQGIRLEAGFGRSKKNIINLETDENKLGKTKNVK LPTGVPENRIDLYTGYTYTQTLSDSLNFRVGAGLGFESSKDSIKTTKHTLHSSRQSWLAKVHADLLSQLGNGWYINPWSE VKFDLNSRYKLNTGVTNLKKDINQKTNGWGFGLGANIGKKLGESASIEAGPFYKQRTYKESGEFSVTTKSGDVSLTIPKT SIREYGLRVGIKF A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 487 NEISSERIA MENINGITIDIS 562 ESCHERICHIA COLI 1 2.16 43 NONE LIPIDIC CUBIC PHASE 18%(V/V) PEG400, 0.1 M POTASSIUM SULFATE, 0.05 M HEPES, PH 7.0 293 citation exptl_crystal_grow reflns chem_comp_atom chem_comp_bond database_2 pdbx_database_status pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Data collection Database references Experimental preparation Data collection Database references Other Refinement description 1 0 2007-10-23 1 1 2011-05-08 1 2 2011-07-13 1 3 2019-09-18 1 4 2023-12-13 _citation.journal_id_ISSN _citation.page_last _citation.pdbx_database_id_DOI _citation.title _exptl_crystal_grow.method _exptl_crystal_grow.temp _reflns.pdbx_Rmerge_I_obs _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_sf STRUCTURE OF THE OPCA ADHESION FROM NEISSERIA MENINGITIDIS DETERMINED BY CRYSTALLIZATION FROM THE CUBIC MESOPHASE CRYSTAL STRUCTURE OF THE OPCA OUTER MEMBRANEADHESIN/INVASIN FROM NEISSERIA MENINGITIDIS SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 10-STRANDED BARREL THIS IS REPRESENTED BY A 11-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. PDBE Y PDBE 2007-10-05 REL REL OCT N-OCTANE SO4 SULFATE ION HOH water SULFATE ION (SO4): FROM CRYSTALLIZATION CONDITIONS N-OCTANE (OCT): ORIGINATES FROM DETERGENT USED IN CRYSTALLIZATION. DENSITY FOR HEADGROUP NOT OBSERVED. 1K24 PDB ENTRY 1K24 PDB experimental model OCT 1254 2 OCT OCT 1254 A SO4 1255 3 SO4 SO4 1255 A HOH 2001 4 HOH HOH 2001 A HOH 2002 4 HOH HOH 2002 A HOH 2003 4 HOH HOH 2003 A HOH 2004 4 HOH HOH 2004 A HOH 2005 4 HOH HOH 2005 A HOH 2006 4 HOH HOH 2006 A HOH 2007 4 HOH HOH 2007 A HOH 2008 4 HOH HOH 2008 A HOH 2009 4 HOH HOH 2009 A HOH 2010 4 HOH HOH 2010 A HOH 2011 4 HOH HOH 2011 A HOH 2012 4 HOH HOH 2012 A HOH 2013 4 HOH HOH 2013 A HOH 2014 4 HOH HOH 2014 A HOH 2015 4 HOH HOH 2015 A HOH 2016 4 HOH HOH 2016 A HOH 2017 4 HOH HOH 2017 A HOH 2018 4 HOH HOH 2018 A HOH 2019 4 HOH HOH 2019 A HOH 2020 4 HOH HOH 2020 A HOH 2021 4 HOH HOH 2021 A HOH 2022 4 HOH HOH 2022 A HOH 2023 4 HOH HOH 2023 A HOH 2024 4 HOH HOH 2024 A HOH 2025 4 HOH HOH 2025 A HOH 2026 4 HOH HOH 2026 A HOH 2027 4 HOH HOH 2027 A HOH 2028 4 HOH HOH 2028 A HOH 2029 4 HOH HOH 2029 A HOH 2030 4 HOH HOH 2030 A HOH 2031 4 HOH HOH 2031 A HOH 2032 4 HOH HOH 2032 A HOH 2033 4 HOH HOH 2033 A HOH 2034 4 HOH HOH 2034 A HOH 2035 4 HOH HOH 2035 A HOH 2036 4 HOH HOH 2036 A HOH 2037 4 HOH HOH 2037 A HOH 2038 4 HOH HOH 2038 A HOH 2039 4 HOH HOH 2039 A HOH 2040 4 HOH HOH 2040 A HOH 2041 4 HOH HOH 2041 A HOH 2042 4 HOH HOH 2042 A HOH 2043 4 HOH HOH 2043 A HOH 2044 4 HOH HOH 2044 A HOH 2045 4 HOH HOH 2045 A HOH 2046 4 HOH HOH 2046 A HOH 2047 4 HOH HOH 2047 A HOH 2048 4 HOH HOH 2048 A HOH 2049 4 HOH HOH 2049 A HOH 2050 4 HOH HOH 2050 A HOH 2051 4 HOH HOH 2051 A HOH 2052 4 HOH HOH 2052 A HOH 2053 4 HOH HOH 2053 A HOH 2054 4 HOH HOH 2054 A HOH 2055 4 HOH HOH 2055 A HOH 2056 4 HOH HOH 2056 A HOH 2057 4 HOH HOH 2057 A HOH 2058 4 HOH HOH 2058 A HOH 2059 4 HOH HOH 2059 A HOH 2060 4 HOH HOH 2060 A HOH 2061 4 HOH HOH 2061 A HOH 2062 4 HOH HOH 2062 A HOH 2063 4 HOH HOH 2063 A HOH 2064 4 HOH HOH 2064 A HOH 2065 4 HOH HOH 2065 A HOH 2066 4 HOH HOH 2066 A HOH 2067 4 HOH HOH 2067 A HOH 2068 4 HOH HOH 2068 A HOH 2069 4 HOH HOH 2069 A HOH 2070 4 HOH HOH 2070 A HOH 2071 4 HOH HOH 2071 A HOH 2072 4 HOH HOH 2072 A HOH 2073 4 HOH HOH 2073 A HOH 2074 4 HOH HOH 2074 A HOH 2075 4 HOH HOH 2075 A HOH 2076 4 HOH HOH 2076 A HOH 2077 4 HOH HOH 2077 A HOH 2078 4 HOH HOH 2078 A HOH 2079 4 HOH HOH 2079 A HOH 2080 4 HOH HOH 2080 A HOH 2081 4 HOH HOH 2081 A HOH 2082 4 HOH HOH 2082 A HOH 2083 4 HOH HOH 2083 A HOH 2084 4 HOH HOH 2084 A HOH 2085 4 HOH HOH 2085 A HOH 2086 4 HOH HOH 2086 A HOH 2087 4 HOH HOH 2087 A HOH 2088 4 HOH HOH 2088 A HOH 2089 4 HOH HOH 2089 A HOH 2090 4 HOH HOH 2090 A HOH 2091 4 HOH HOH 2091 A HOH 2092 4 HOH HOH 2092 A HOH 2093 4 HOH HOH 2093 A HOH 2094 4 HOH HOH 2094 A HOH 2095 4 HOH HOH 2095 A HOH 2096 4 HOH HOH 2096 A HOH 2097 4 HOH HOH 2097 A HOH 2098 4 HOH HOH 2098 A HOH 2099 4 HOH HOH 2099 A HOH 2100 4 HOH HOH 2100 A HOH 2101 4 HOH HOH 2101 A HOH 2102 4 HOH HOH 2102 A HOH 2103 4 HOH HOH 2103 A HOH 2104 4 HOH HOH 2104 A HOH 2105 4 HOH HOH 2105 A HOH 2106 4 HOH HOH 2106 A HOH 2107 4 HOH HOH 2107 A HOH 2108 4 HOH HOH 2108 A HOH 2109 4 HOH HOH 2109 A HOH 2110 4 HOH HOH 2110 A HOH 2111 4 HOH HOH 2111 A HOH 2112 4 HOH HOH 2112 A HOH 2113 4 HOH HOH 2113 A HOH 2114 4 HOH HOH 2114 A HOH 2115 4 HOH HOH 2115 A HOH 2116 4 HOH HOH 2116 A HOH 2117 4 HOH HOH 2117 A HOH 2118 4 HOH HOH 2118 A HOH 2119 4 HOH HOH 2119 A HOH 2120 4 HOH HOH 2120 A n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A ALA 7 n 7 ALA 7 A ASN 8 n 8 ASN 8 A GLU 9 n 9 GLU 9 A PHE 10 n 10 PHE 10 A THR 11 n 11 THR 11 A VAL 12 n 12 VAL 12 A HIS 13 n 13 HIS 13 A THR 14 n 14 THR 14 A ASP 15 n 15 ASP 15 A LEU 16 n 16 LEU 16 A SER 17 n 17 SER 17 A SER 18 n 18 SER 18 A ILE 19 n 19 ILE 19 A SER 20 n 20 SER 20 A SER 21 n 21 SER 21 A THR 22 n 22 THR 22 A ARG 23 n 23 ARG 23 A ALA 24 n 24 ALA 24 A PHE 25 n 25 PHE 25 A LEU 26 n 26 LEU 26 A LYS 27 n 27 LYS 27 A GLU 28 n 28 GLU 28 A LYS 29 n 29 LYS 29 A HIS 30 n 30 HIS 30 A LYS 31 n 31 LYS 31 A ALA 32 n 32 ALA 32 A ALA 33 n 33 ALA 33 A LYS 34 n 34 LYS 34 A HIS 35 n 35 HIS 35 A ILE 36 n 36 ILE 36 A GLY 37 n 37 GLY 37 A VAL 38 n 38 VAL 38 A ARG 39 n 39 ARG 39 A ALA 40 n 40 ALA 40 A ASP 41 n 41 ASP 41 A ILE 42 n 42 ILE 42 A PRO 43 n 43 PRO 43 A PHE 44 n 44 PHE 44 A ASP 45 n 45 ASP 45 A ALA 46 n 46 ALA 46 A ASN 47 n 47 ASN 47 A GLN 48 n 48 GLN 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A ARG 51 n 51 ARG 51 A LEU 52 n 52 LEU 52 A GLU 53 n 53 GLU 53 A ALA 54 n 54 ALA 54 A GLY 55 n 55 GLY 55 A PHE 56 n 56 PHE 56 A GLY 57 n 57 GLY 57 A ARG 58 n 58 ARG 58 A SER 59 n 59 SER 59 A LYS 60 n 60 LYS 60 A LYS 61 n 61 LYS 61 A ASN 62 n 62 ASN 62 A ILE 63 n 63 ILE 63 A ILE 64 n 64 ILE 64 A ASN 65 n 65 ASN 65 A LEU 66 n 66 LEU 66 A GLU 67 n 67 GLU 67 A THR 68 n 68 THR 68 A ASP 69 n 69 ASP 69 A GLU 70 n 70 GLU 70 A ASN 71 n 71 ASN 71 A LYS 72 n 72 LYS 72 A LEU 73 n 73 LEU 73 A GLY 74 n 74 GLY 74 A LYS 75 n 75 LYS 75 A THR 76 n 76 THR 76 A LYS 77 n 77 LYS 77 A ASN 78 n 78 ASN 78 A VAL 79 n 79 VAL 79 A LYS 80 n 80 LYS 80 A LEU 81 n 81 LEU 81 A PRO 82 n 82 PRO 82 A THR 83 n 83 THR 83 A GLY 84 n 84 GLY 84 A VAL 85 n 85 VAL 85 A PRO 86 n 86 PRO 86 A GLU 87 n 87 GLU 87 A ASN 88 n 88 ASN 88 A ARG 89 n 89 ARG 89 A ILE 90 n 90 ILE 90 A ASP 91 n 91 ASP 91 A LEU 92 n 92 LEU 92 A TYR 93 n 93 TYR 93 A THR 94 n 94 THR 94 A GLY 95 n 95 GLY 95 A TYR 96 n 96 TYR 96 A THR 97 n 97 THR 97 A TYR 98 n 98 TYR 98 A THR 99 n 99 THR 99 A GLN 100 n 100 GLN 100 A THR 101 n 101 THR 101 A LEU 102 n 102 LEU 102 A SER 103 n 103 SER 103 A ASP 104 n 104 ASP 104 A SER 105 n 105 SER 105 A LEU 106 n 106 LEU 106 A ASN 107 n 107 ASN 107 A PHE 108 n 108 PHE 108 A ARG 109 n 109 ARG 109 A VAL 110 n 110 VAL 110 A GLY 111 n 111 GLY 111 A ALA 112 n 112 ALA 112 A GLY 113 n 113 GLY 113 A LEU 114 n 114 LEU 114 A GLY 115 n 115 GLY 115 A PHE 116 n 116 PHE 116 A GLU 117 n 117 GLU 117 A SER 118 n 118 SER 118 A SER 119 n 119 SER 119 A LYS 120 n 120 LYS 120 A ASP 121 n 121 ASP 121 A SER 122 n 122 SER 122 A ILE 123 n 123 ILE 123 A n 124 124 A n 125 125 A n 126 126 A n 127 127 A n 128 128 A n 129 129 A LEU 130 n 130 LEU 130 A HIS 131 n 131 HIS 131 A SER 132 n 132 SER 132 A SER 133 n 133 SER 133 A ARG 134 n 134 ARG 134 A GLN 135 n 135 GLN 135 A SER 136 n 136 SER 136 A TRP 137 n 137 TRP 137 A LEU 138 n 138 LEU 138 A ALA 139 n 139 ALA 139 A LYS 140 n 140 LYS 140 A VAL 141 n 141 VAL 141 A HIS 142 n 142 HIS 142 A ALA 143 n 143 ALA 143 A ASP 144 n 144 ASP 144 A LEU 145 n 145 LEU 145 A LEU 146 n 146 LEU 146 A SER 147 n 147 SER 147 A GLN 148 n 148 GLN 148 A LEU 149 n 149 LEU 149 A GLY 150 n 150 GLY 150 A ASN 151 n 151 ASN 151 A GLY 152 n 152 GLY 152 A TRP 153 n 153 TRP 153 A TYR 154 n 154 TYR 154 A ILE 155 n 155 ILE 155 A ASN 156 n 156 ASN 156 A PRO 157 n 157 PRO 157 A TRP 158 n 158 TRP 158 A SER 159 n 159 SER 159 A GLU 160 n 160 GLU 160 A VAL 161 n 161 VAL 161 A LYS 162 n 162 LYS 162 A PHE 163 n 163 PHE 163 A ASP 164 n 164 ASP 164 A LEU 165 n 165 LEU 165 A ASN 166 n 166 ASN 166 A SER 167 n 167 SER 167 A ARG 168 n 168 ARG 168 A TYR 169 n 169 TYR 169 A LYS 170 n 170 LYS 170 A LEU 171 n 171 LEU 171 A ASN 172 n 172 ASN 172 A THR 173 n 173 THR 173 A n 174 174 A n 175 175 A n 176 176 A n 177 177 A n 178 178 A n 179 179 A n 180 180 A ASP 181 n 181 ASP 181 A ILE 182 n 182 ILE 182 A ASN 183 n 183 ASN 183 A GLN 184 n 184 GLN 184 A LYS 185 n 185 LYS 185 A THR 186 n 186 THR 186 A ASN 187 n 187 ASN 187 A GLY 188 n 188 GLY 188 A TRP 189 n 189 TRP 189 A GLY 190 n 190 GLY 190 A PHE 191 n 191 PHE 191 A GLY 192 n 192 GLY 192 A LEU 193 n 193 LEU 193 A GLY 194 n 194 GLY 194 A ALA 195 n 195 ALA 195 A ASN 196 n 196 ASN 196 A ILE 197 n 197 ILE 197 A GLY 198 n 198 GLY 198 A LYS 199 n 199 LYS 199 A LYS 200 n 200 LYS 200 A LEU 201 n 201 LEU 201 A GLY 202 n 202 GLY 202 A n 203 203 A n 204 204 A ALA 205 n 205 ALA 205 A SER 206 n 206 SER 206 A ILE 207 n 207 ILE 207 A GLU 208 n 208 GLU 208 A ALA 209 n 209 ALA 209 A GLY 210 n 210 GLY 210 A PRO 211 n 211 PRO 211 A PHE 212 n 212 PHE 212 A TYR 213 n 213 TYR 213 A LYS 214 n 214 LYS 214 A GLN 215 n 215 GLN 215 A ARG 216 n 216 ARG 216 A THR 217 n 217 THR 217 A TYR 218 n 218 TYR 218 A LYS 219 n 219 LYS 219 A GLU 220 n 220 GLU 220 A SER 221 n 221 SER 221 A GLY 222 n 222 GLY 222 A GLU 223 n 223 GLU 223 A PHE 224 n 224 PHE 224 A SER 225 n 225 SER 225 A n 226 226 A n 227 227 A n 228 228 A n 229 229 A n 230 230 A n 231 231 A n 232 232 A VAL 233 n 233 VAL 233 A SER 234 n 234 SER 234 A LEU 235 n 235 LEU 235 A THR 236 n 236 THR 236 A ILE 237 n 237 ILE 237 A PRO 238 n 238 PRO 238 A LYS 239 n 239 LYS 239 A THR 240 n 240 THR 240 A SER 241 n 241 SER 241 A ILE 242 n 242 ILE 242 A ARG 243 n 243 ARG 243 A GLU 244 n 244 GLU 244 A TYR 245 n 245 TYR 245 A GLY 246 n 246 GLY 246 A LEU 247 n 247 LEU 247 A ARG 248 n 248 ARG 248 A VAL 249 n 249 VAL 249 A GLY 250 n 250 GLY 250 A ILE 251 n 251 ILE 251 A LYS 252 n 252 LYS 252 A PHE 253 n 253 PHE 253 A software_defined_assembly PQS 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ARG 23 A N ARG 23 A O LEU 26 A O LEU 26 A N ILE 42 A N ILE 42 A O ILE 50 A O ILE 50 A N LYS 61 A N LYS 61 A O VAL 85 A O VAL 85 A N LEU 102 A N LEU 102 A O LEU 106 A O LEU 106 A N ASP 121 A N ASP 121 A O SER 132 A O SER 132 A N LEU 149 A N LEU 149 A O TRP 153 A O TRP 153 A N LEU 171 A N LEU 171 A O ILE 182 A O ILE 182 A N ASP 41 A N ASP 41 A O GLU 9 A O GLU 9 A N ILE 64 A N ILE 64 A O LYS 27 A O LYS 27 A N THR 97 A N THR 97 A O GLY 49 A O GLY 49 A N SER 122 A N SER 122 A O PRO 86 A O PRO 86 A N LEU 146 A N LEU 146 A O ASN 107 A O ASN 107 A N LYS 170 A N LYS 170 A O SER 133 A O SER 133 A N GLN 184 A N GLN 184 A O TYR 169 A O TYR 169 A N ASP 164 A N ASP 164 A O GLY 188 A O GLY 188 A N GLY 198 A N GLY 198 A O TYR 154 A O TYR 154 A N THR 217 A N THR 217 A O TRP 189 A O TRP 189 A N PHE 253 A N PHE 253 A O PHE 10 A O PHE 10 1 A CG LYS 80 A CG LYS 80 1 Y 1 A CD LYS 80 A CD LYS 80 1 Y 1 A CE LYS 80 A CE LYS 80 1 Y 1 A NZ LYS 80 A NZ LYS 80 1 Y 1 A OG1 THR 173 A OG1 THR 173 1 Y 1 A CG2 THR 173 A CG2 THR 173 1 Y 1 A ALA 1 A ALA 1 1 Y 1 A GLN 2 A GLN 2 1 Y 1 A GLU 3 A GLU 3 1 Y 1 A LEU 4 A LEU 4 1 Y 1 A GLN 5 A GLN 5 1 Y 1 A THR 6 A THR 6 1 Y 1 A LYS 124 A LYS 124 1 Y 1 A THR 125 A THR 125 1 Y 1 A THR 126 A THR 126 1 Y 1 A LYS 127 A LYS 127 1 Y 1 A HIS 128 A HIS 128 1 Y 1 A THR 129 A THR 129 1 Y 1 A GLY 174 A GLY 174 1 Y 1 A VAL 175 A VAL 175 1 Y 1 A THR 176 A THR 176 1 Y 1 A ASN 177 A ASN 177 1 Y 1 A LEU 178 A LEU 178 1 Y 1 A LYS 179 A LYS 179 1 Y 1 A LYS 180 A LYS 180 1 Y 1 A GLU 203 A GLU 203 1 Y 1 A SER 204 A SER 204 1 Y 1 A VAL 226 A VAL 226 1 Y 1 A THR 227 A THR 227 1 Y 1 A THR 228 A THR 228 1 Y 1 A LYS 229 A LYS 229 1 Y 1 A SER 230 A SER 230 1 Y 1 A GLY 231 A GLY 231 1 Y 1 A ASP 232 A ASP 232 1 Y 1 A A O O HOH HOH 2107 2109 1.99 1 A A O O HOH HOH 2005 2006 2.11 1 A A O O HOH HOH 2065 2075 2.12 1 A A O O HOH HOH 2082 2114 2.18 1 A A O O HOH HOH 2105 2106 2.18 1 A A GLY LYS 74 75 -112.27 1 A ALA 24 58.02 -121.20 1 A LEU 201 -105.02 75.99 20.83 -0.11000 0.00000 0.00000 0.71000 0.00000 -0.60000 0.933 0.899 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 0.272 0.224 0.227 1.95 10.00 927 17043 5.200 98.2 8.889 0.135 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.201 0.181 0.80 0.80 1.20 PDB ENTRY 1K24 MAXIMUM LIKELIHOOD MASK 1.95 10.00 120 1900 13 0 1767 0.007 0.022 1811 1.150 1.953 2432 9.423 5.000 220 34.545 23.902 82 13.391 15.000 318 13.721 15.000 11 0.093 0.200 262 0.004 0.020 1346 0.236 0.300 690 0.314 0.500 1202 0.228 0.500 226 0.300 0.300 73 0.440 0.500 11 4.985 1.500 1131 6.208 2.000 1762 9.647 3.000 769 12.061 4.500 670 0.3050 0.2240 2.00 59 1218 20 1.95 20.00 2VDF 18131 2.0 0.099 1 13.10 4.8 98.8 0.49 1.95 2.06 2.70 1 4.7 99.8 refinement REFMAC 5.2.0019 data reduction MOSFLM data scaling SCALA phasing MOLREP Structure of the OpcA adhesion from Neisseria meningitidis determined by crystallization from the cubic mesophase 1 N N 2 N N 3 N N 4 N N A THR 68 A THR 68 HELX_P A LEU 73 A LEU 73 1 1 6 MEMBRANE PROTEIN INVASIN, ADHESIN, BETA BARREL, OUTER MEMBRANE, MEMBRANE PROTEIN Q9AE79_NEIME UNP 1 Q9AE79 2VDF PDB 1 2VDF 1 252 2VDF 1 252 Q9AE79 A 1 1 252 253 253 2VDF 253 253 2VDF A 2 253 253 1 SER conflict GLY 37 2VDF A Q9AE79 UNP 37 37 28 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A GLU 9 A GLU 9 A ARG 23 A ARG 23 A LEU 26 A LEU 26 A PRO 43 A PRO 43 A GLN 48 A GLN 48 A ASN 65 A ASN 65 A VAL 85 A VAL 85 A SER 103 A SER 103 A LEU 106 A LEU 106 A SER 122 A SER 122 A HIS 131 A HIS 131 A GLY 150 A GLY 150 A TRP 153 A TRP 153 A LEU 171 A LEU 171 A ILE 182 A ILE 182 A LYS 185 A LYS 185 A LEU 26 A LEU 26 A PRO 43 A PRO 43 A GLU 9 A GLU 9 A ARG 23 A ARG 23 A GLN 48 A GLN 48 A ASN 65 A ASN 65 A LEU 26 A LEU 26 A PRO 43 A PRO 43 A VAL 85 A VAL 85 A SER 103 A SER 103 A GLN 48 A GLN 48 A ASN 65 A ASN 65 A LEU 106 A LEU 106 A SER 122 A SER 122 A VAL 85 A VAL 85 A SER 103 A SER 103 A HIS 131 A HIS 131 A GLY 150 A GLY 150 A LEU 106 A LEU 106 A SER 122 A SER 122 A TRP 153 A TRP 153 A LEU 171 A LEU 171 A HIS 131 A HIS 131 A GLY 150 A GLY 150 A ILE 182 A ILE 182 A LYS 185 A LYS 185 A TRP 153 A TRP 153 A LEU 171 A LEU 171 A GLY 188 A GLY 188 A LYS 200 A LYS 200 A TRP 153 A TRP 153 A LEU 171 A LEU 171 A SER 206 A SER 206 A TYR 218 A TYR 218 A GLY 188 A GLY 188 A LYS 200 A LYS 200 A THR 240 A THR 240 A PHE 253 A PHE 253 A GLU 9 A GLU 9 A ARG 23 A ARG 23 BINDING SITE FOR RESIDUE OCT A1254 Software 2 BINDING SITE FOR RESIDUE SO4 A1255 Software 5 A ILE 207 A ILE 207 2 1_555 A ILE 251 A ILE 251 2 1_555 A ASN 47 A ASN 47 5 1_555 A GLN 100 A GLN 100 5 1_555 A THR 101 A THR 101 5 1_555 A LYS 120 A LYS 120 5 1_555 A HOH 2120 D HOH 5 1_555 19 P 21 21 21