0.029404 0.000000 0.000000 0.000000 0.014913 0.000000 0.000000 0.000000 0.014749 0.00000 0.00000 0.00000 Komander, D. Bayascas, J.R. Deak, M. Alessi, D.R. van Aalten, D.M.F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 34.009 67.057 67.802 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N C N 138 N O N 139 N C N 140 N O N 141 N C N 142 N O N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N N N 152 S C N 153 N C N 154 N O N 155 N C Y 156 N C Y 157 N N Y 158 N C Y 159 N C Y 160 N N N 161 N O N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N O N 173 N H N 174 N H N 175 N N N 176 S C N 177 N C N 178 N O N 179 S C N 180 N C N 181 N C N 182 N C N 183 N O N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N N N 198 S C N 199 N C N 200 N O N 201 N C N 202 N C N 203 N C N 204 N C N 205 N O N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N N N 220 S C N 221 N C N 222 N O N 223 N C N 224 N C N 225 N C N 226 N C N 227 N N N 228 N O N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N N N 245 S C N 246 N C N 247 N O N 248 N C N 249 N C N 250 N S N 251 N C N 252 N O N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N N N 265 S C N 266 N C N 267 N O N 268 N C Y 269 N C Y 270 N C Y 271 N C Y 272 N C Y 273 N C Y 274 N C N 275 N O N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C N 292 N C N 293 N C N 294 N O N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 N C N 309 N O N 310 N O N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N S N 319 N O N 320 N O N 321 N O N 322 N O N 323 N N N 324 S C N 325 N C N 326 N O N 327 R C N 328 N O N 329 N C N 330 N O N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N N N 341 S C N 342 N C N 343 N O N 344 N C Y 345 N C Y 346 N C Y 347 N C Y 348 N N Y 349 N C Y 350 N C Y 351 N C Y 352 N C Y 353 N C N 354 N O N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N N N 368 S C N 369 N C N 370 N O N 371 N C Y 372 N C Y 373 N C Y 374 N C Y 375 N C Y 376 N C Y 377 N C N 378 N O N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N N N 392 S C N 393 N C N 394 N O N 395 N C N 396 N C N 397 N C N 398 N O N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing Y 153 N sing Y 154 N doub Y 155 N doub N 156 N sing Y 157 N sing N 158 N sing Y 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N doub N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N doub N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N doub N 257 N sing N 258 N sing N 259 N sing N 260 N sing Y 261 N doub Y 262 N sing Y 263 N sing N 264 N sing Y 265 N doub N 266 N sing Y 267 N doub N 268 N sing Y 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N doub N 304 N doub N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N doub N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N doub N 330 N sing N 331 N sing N 332 N sing N 333 N sing Y 334 N doub Y 335 N sing Y 336 N sing N 337 N sing Y 338 N doub Y 339 N sing Y 340 N sing N 341 N sing Y 342 N sing Y 343 N doub N 344 N sing Y 345 N doub N 346 N sing Y 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N doub N 358 N sing N 359 N sing N 360 N sing N 361 N sing Y 362 N doub Y 363 N sing Y 364 N sing N 365 N sing Y 366 N doub N 367 N sing Y 368 N doub N 369 N sing Y 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N doub N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing US Mol.Cell.Biol. MCEBD4 2044 0270-7306 28 3258 10.1128/MCB.02032-07 18347057 Mutation of the Pdk1 Ph Domain Inhibits Protein Kinase B/Akt, Leading to Small Size and Insulin Resistance. 2008 10.2210/pdb2vki/pdb pdb_00002vki 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE 2004-06-30 RIGAKU IMAGE PLATE SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU MICROMAX-007 17548.791 3-PHOPSHOINOSITIDE DEPENDENT PROTEIN KINASE 1 2.7.11.1 PLECKSTRIN HOMOLOGY (PH) DOMAIN, RESIDUES 409-556 YES 1 man polymer 92.094 GLYCEROL 1 syn non-polymer 96.063 SULFATE ION 1 syn non-polymer 18.015 water 112 nat water HPDK1 no no GSNIEQYIHDLDSNSFELDLQFSEDEKRLLLEKQAGGNPWHQFVENNLILKMGPVDERKGLFARRRQLLLTEGPHLYYVD PVNKVLKGEIPWSQELRPEAKNFKTFFVHTPNRTYYLMDPSGNAHKWCRKIQEVWRQRYQSHPDAAVQ GSNIEQYIHDLDSNSFELDLQFSEDEKRLLLEKQAGGNPWHQFVENNLILKMGPVDERKGLFARRRQLLLTEGPHLYYVD PVNKVLKGEIPWSQELRPEAKNFKTFFVHTPNRTYYLMDPSGNAHKWCRKIQEVWRQRYQSHPDAAVQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n HUMAN sample 9606 HOMO SAPIENS 469008 ESCHERICHIA COLI BL21(DE3) PGEX6P1 1 2.2 44 NONE 8.5 0.2 M LITHIUM SULPHATE, 0.1 M TRIS HYDROCHLORIDE [PH 8.5] 30 % (W/V) PEG 4000 chem_comp_atom chem_comp_bond database_2 pdbx_database_status pdbx_initial_refinement_model repository Initial release Advisory Refinement description Version format compliance Data collection Database references Other Refinement description 1 0 2008-05-13 1 1 2011-07-13 1 2 2023-12-13 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_sf STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-1 STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH STAUROSPORINE CRYSTAL STRUCTURE OF N1-[3-[[5-BROMO-2-[[ 3-[(1-PYRROLIDINYLCARBONYL)AMINO]PHENYL]AMINO ]-4-PYRIMIDINYL]AMINO]PROPYL]-2,2- DIMETHYLPROPANEDIAMIDECOMPLEXED WITH HUMAN PDK1 STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-3 STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH UCN-01 CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN HOMOLOGY (PH) DOMAIN BOUND TO INOSITOL (1, 3,4,5)-TETRAKISPHOSPHATE HIGH RESOLUTION CRYSTAL STRUCTURE OF THE HUMAN PDK1 CATALYTIC DOMAIN STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH LY333531 CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN HOMOLOGY (PH) DOMAIN BOUND TO DIC4- PHOSPHATIDYLINOSITOL (3,4,5)-TRISPHOSPHATE STRUCTURE OF PDK1-S241A MUTANT KINASE DOMAIN CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN HOMOLOGY (PH) DOMAIN STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-2 STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-8 SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED. PDBE Y PDBE 2007-12-19 REL REL GOL GLYCEROL SO4 SULFATE ION HOH water ENGINEERED RESIDUE IN CHAIN A, LYS 465 TO GLU POINT MUTATION K465E 1W1D PDB ENTRY 1W1D PDB experimental model GOL 1549 2 GOL GOL 1549 A SO4 1550 3 SO4 SO4 1550 A HOH 2001 4 HOH HOH 2001 A HOH 2002 4 HOH HOH 2002 A HOH 2003 4 HOH HOH 2003 A HOH 2004 4 HOH HOH 2004 A HOH 2005 4 HOH HOH 2005 A HOH 2006 4 HOH HOH 2006 A HOH 2007 4 HOH HOH 2007 A HOH 2008 4 HOH HOH 2008 A HOH 2009 4 HOH HOH 2009 A HOH 2010 4 HOH HOH 2010 A HOH 2011 4 HOH HOH 2011 A HOH 2012 4 HOH HOH 2012 A HOH 2013 4 HOH HOH 2013 A HOH 2014 4 HOH HOH 2014 A HOH 2015 4 HOH HOH 2015 A HOH 2016 4 HOH HOH 2016 A HOH 2017 4 HOH HOH 2017 A HOH 2018 4 HOH HOH 2018 A HOH 2019 4 HOH HOH 2019 A HOH 2020 4 HOH HOH 2020 A HOH 2021 4 HOH HOH 2021 A HOH 2022 4 HOH HOH 2022 A HOH 2023 4 HOH HOH 2023 A HOH 2024 4 HOH HOH 2024 A HOH 2025 4 HOH HOH 2025 A HOH 2026 4 HOH HOH 2026 A HOH 2027 4 HOH HOH 2027 A HOH 2028 4 HOH HOH 2028 A HOH 2029 4 HOH HOH 2029 A HOH 2030 4 HOH HOH 2030 A HOH 2031 4 HOH HOH 2031 A HOH 2032 4 HOH HOH 2032 A HOH 2033 4 HOH HOH 2033 A HOH 2034 4 HOH HOH 2034 A HOH 2035 4 HOH HOH 2035 A HOH 2036 4 HOH HOH 2036 A HOH 2037 4 HOH HOH 2037 A HOH 2038 4 HOH HOH 2038 A HOH 2039 4 HOH HOH 2039 A HOH 2040 4 HOH HOH 2040 A HOH 2041 4 HOH HOH 2041 A HOH 2042 4 HOH HOH 2042 A HOH 2043 4 HOH HOH 2043 A HOH 2044 4 HOH HOH 2044 A HOH 2045 4 HOH HOH 2045 A HOH 2046 4 HOH HOH 2046 A HOH 2047 4 HOH HOH 2047 A HOH 2048 4 HOH HOH 2048 A HOH 2049 4 HOH HOH 2049 A HOH 2050 4 HOH HOH 2050 A HOH 2051 4 HOH HOH 2051 A HOH 2052 4 HOH HOH 2052 A HOH 2053 4 HOH HOH 2053 A HOH 2054 4 HOH HOH 2054 A HOH 2055 4 HOH HOH 2055 A HOH 2056 4 HOH HOH 2056 A HOH 2057 4 HOH HOH 2057 A HOH 2058 4 HOH HOH 2058 A HOH 2059 4 HOH HOH 2059 A HOH 2060 4 HOH HOH 2060 A HOH 2061 4 HOH HOH 2061 A HOH 2062 4 HOH HOH 2062 A HOH 2063 4 HOH HOH 2063 A HOH 2064 4 HOH HOH 2064 A HOH 2065 4 HOH HOH 2065 A HOH 2066 4 HOH HOH 2066 A HOH 2067 4 HOH HOH 2067 A HOH 2068 4 HOH HOH 2068 A HOH 2069 4 HOH HOH 2069 A HOH 2070 4 HOH HOH 2070 A HOH 2071 4 HOH HOH 2071 A HOH 2072 4 HOH HOH 2072 A HOH 2073 4 HOH HOH 2073 A HOH 2074 4 HOH HOH 2074 A HOH 2075 4 HOH HOH 2075 A HOH 2076 4 HOH HOH 2076 A HOH 2077 4 HOH HOH 2077 A HOH 2078 4 HOH HOH 2078 A HOH 2079 4 HOH HOH 2079 A HOH 2080 4 HOH HOH 2080 A HOH 2081 4 HOH HOH 2081 A HOH 2082 4 HOH HOH 2082 A HOH 2083 4 HOH HOH 2083 A HOH 2084 4 HOH HOH 2084 A HOH 2085 4 HOH HOH 2085 A HOH 2086 4 HOH HOH 2086 A HOH 2087 4 HOH HOH 2087 A HOH 2088 4 HOH HOH 2088 A HOH 2089 4 HOH HOH 2089 A HOH 2090 4 HOH HOH 2090 A HOH 2091 4 HOH HOH 2091 A HOH 2092 4 HOH HOH 2092 A HOH 2093 4 HOH HOH 2093 A HOH 2094 4 HOH HOH 2094 A HOH 2095 4 HOH HOH 2095 A HOH 2096 4 HOH HOH 2096 A HOH 2097 4 HOH HOH 2097 A HOH 2098 4 HOH HOH 2098 A HOH 2099 4 HOH HOH 2099 A HOH 2100 4 HOH HOH 2100 A HOH 2101 4 HOH HOH 2101 A HOH 2102 4 HOH HOH 2102 A HOH 2103 4 HOH HOH 2103 A HOH 2104 4 HOH HOH 2104 A HOH 2105 4 HOH HOH 2105 A HOH 2106 4 HOH HOH 2106 A HOH 2107 4 HOH HOH 2107 A HOH 2108 4 HOH HOH 2108 A HOH 2109 4 HOH HOH 2109 A HOH 2110 4 HOH HOH 2110 A HOH 2111 4 HOH HOH 2111 A HOH 2112 4 HOH HOH 2112 A n 1 409 A SER 410 n 2 SER 410 A ASN 411 n 3 ASN 411 A ILE 412 n 4 ILE 412 A GLU 413 n 5 GLU 413 A GLN 414 n 6 GLN 414 A TYR 415 n 7 TYR 415 A ILE 416 n 8 ILE 416 A HIS 417 n 9 HIS 417 A ASP 418 n 10 ASP 418 A LEU 419 n 11 LEU 419 A ASP 420 n 12 ASP 420 A SER 421 n 13 SER 421 A ASN 422 n 14 ASN 422 A SER 423 n 15 SER 423 A PHE 424 n 16 PHE 424 A GLU 425 n 17 GLU 425 A LEU 426 n 18 LEU 426 A ASP 427 n 19 ASP 427 A LEU 428 n 20 LEU 428 A GLN 429 n 21 GLN 429 A PHE 430 n 22 PHE 430 A SER 431 n 23 SER 431 A GLU 432 n 24 GLU 432 A ASP 433 n 25 ASP 433 A GLU 434 n 26 GLU 434 A LYS 435 n 27 LYS 435 A ARG 436 n 28 ARG 436 A LEU 437 n 29 LEU 437 A LEU 438 n 30 LEU 438 A LEU 439 n 31 LEU 439 A GLU 440 n 32 GLU 440 A LYS 441 n 33 LYS 441 A GLN 442 n 34 GLN 442 A ALA 443 n 35 ALA 443 A GLY 444 n 36 GLY 444 A GLY 445 n 37 GLY 445 A ASN 446 n 38 ASN 446 A PRO 447 n 39 PRO 447 A TRP 448 n 40 TRP 448 A HIS 449 n 41 HIS 449 A GLN 450 n 42 GLN 450 A PHE 451 n 43 PHE 451 A VAL 452 n 44 VAL 452 A GLU 453 n 45 GLU 453 A ASN 454 n 46 ASN 454 A ASN 455 n 47 ASN 455 A LEU 456 n 48 LEU 456 A ILE 457 n 49 ILE 457 A LEU 458 n 50 LEU 458 A LYS 459 n 51 LYS 459 A MET 460 n 52 MET 460 A GLY 461 n 53 GLY 461 A PRO 462 n 54 PRO 462 A VAL 463 n 55 VAL 463 A ASP 464 n 56 ASP 464 A GLU 465 n 57 GLU 465 A ARG 466 n 58 ARG 466 A LYS 467 n 59 LYS 467 A GLY 468 n 60 GLY 468 A LEU 469 n 61 LEU 469 A PHE 470 n 62 PHE 470 A ALA 471 n 63 ALA 471 A ARG 472 n 64 ARG 472 A ARG 473 n 65 ARG 473 A ARG 474 n 66 ARG 474 A GLN 475 n 67 GLN 475 A LEU 476 n 68 LEU 476 A LEU 477 n 69 LEU 477 A LEU 478 n 70 LEU 478 A THR 479 n 71 THR 479 A GLU 480 n 72 GLU 480 A GLY 481 n 73 GLY 481 A PRO 482 n 74 PRO 482 A HIS 483 n 75 HIS 483 A LEU 484 n 76 LEU 484 A TYR 485 n 77 TYR 485 A TYR 486 n 78 TYR 486 A VAL 487 n 79 VAL 487 A ASP 488 n 80 ASP 488 A PRO 489 n 81 PRO 489 A VAL 490 n 82 VAL 490 A ASN 491 n 83 ASN 491 A LYS 492 n 84 LYS 492 A VAL 493 n 85 VAL 493 A LEU 494 n 86 LEU 494 A LYS 495 n 87 LYS 495 A GLY 496 n 88 GLY 496 A GLU 497 n 89 GLU 497 A ILE 498 n 90 ILE 498 A PRO 499 n 91 PRO 499 A TRP 500 n 92 TRP 500 A SER 501 n 93 SER 501 A GLN 502 n 94 GLN 502 A GLU 503 n 95 GLU 503 A LEU 504 n 96 LEU 504 A ARG 505 n 97 ARG 505 A PRO 506 n 98 PRO 506 A GLU 507 n 99 GLU 507 A ALA 508 n 100 ALA 508 A LYS 509 n 101 LYS 509 A ASN 510 n 102 ASN 510 A PHE 511 n 103 PHE 511 A LYS 512 n 104 LYS 512 A THR 513 n 105 THR 513 A PHE 514 n 106 PHE 514 A PHE 515 n 107 PHE 515 A VAL 516 n 108 VAL 516 A HIS 517 n 109 HIS 517 A THR 518 n 110 THR 518 A PRO 519 n 111 PRO 519 A ASN 520 n 112 ASN 520 A ARG 521 n 113 ARG 521 A THR 522 n 114 THR 522 A TYR 523 n 115 TYR 523 A TYR 524 n 116 TYR 524 A LEU 525 n 117 LEU 525 A MET 526 n 118 MET 526 A ASP 527 n 119 ASP 527 A PRO 528 n 120 PRO 528 A SER 529 n 121 SER 529 A GLY 530 n 122 GLY 530 A ASN 531 n 123 ASN 531 A ALA 532 n 124 ALA 532 A HIS 533 n 125 HIS 533 A LYS 534 n 126 LYS 534 A TRP 535 n 127 TRP 535 A CYS 536 n 128 CYS 536 A ARG 537 n 129 ARG 537 A LYS 538 n 130 LYS 538 A ILE 539 n 131 ILE 539 A GLN 540 n 132 GLN 540 A GLU 541 n 133 GLU 541 A VAL 542 n 134 VAL 542 A TRP 543 n 135 TRP 543 A ARG 544 n 136 ARG 544 A GLN 545 n 137 GLN 545 A ARG 546 n 138 ARG 546 A TYR 547 n 139 TYR 547 A GLN 548 n 140 GLN 548 A SER 549 n 141 SER 549 A n 142 550 A n 143 551 A n 144 552 A n 145 553 A n 146 554 A n 147 555 A n 148 556 A 0.3314 -0.1515 0.1228 1.1483 -0.1352 0.8004 -0.0030 -0.0485 -0.0011 0.0306 0.0445 -0.0373 -0.0251 0.0218 -0.0415 0.0395 -0.0056 -0.0072 0.0345 -0.0087 0.0428 refined 1.9703 17.6963 11.1860 X-RAY DIFFRACTION 0.5356 -0.2601 0.1261 0.2234 -0.0010 1.0095 -0.0394 -0.0679 0.0286 0.0022 0.0407 0.0228 0.0028 -0.0211 -0.0013 0.0117 0.0080 -0.0076 0.0128 -0.0209 0.0388 refined -0.7469 16.3049 12.3078 X-RAY DIFFRACTION A 414 A 466 X-RAY DIFFRACTION 1 A 472 A 487 X-RAY DIFFRACTION 1 A 494 A 543 X-RAY DIFFRACTION 1 A 410 A 413 X-RAY DIFFRACTION 2 A 467 A 471 X-RAY DIFFRACTION 2 A 544 A 549 X-RAY DIFFRACTION 2 A 488 A 493 X-RAY DIFFRACTION 2 author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 419 A N LEU 11 A O SER 423 A O SER 15 A N LEU 426 A N LEU 18 A O LEU 458 A O LEU 50 A N GLU 465 A N GLU 57 A O ARG 472 A O ARG 64 A N THR 479 A N THR 71 A O HIS 483 A O HIS 75 A N ASP 488 A N ASP 80 A O VAL 493 A O VAL 85 A N LEU 419 A N LEU 11 A O SER 423 A O SER 15 A N LEU 426 A N LEU 18 A O LEU 458 A O LEU 50 A N ASP 464 A N ASP 56 A O MET 526 A O MET 118 A N LEU 525 A N LEU 117 A O PHE 514 A O PHE 106 A N HIS 517 A N HIS 109 A O ARG 505 A O ARG 97 1 A CG GLN 429 A CG GLN 21 1 Y 1 A CD GLN 429 A CD GLN 21 1 Y 1 A OE1 GLN 429 A OE1 GLN 21 1 Y 1 A NE2 GLN 429 A NE2 GLN 21 1 Y 1 A CG GLN 548 A CG GLN 140 1 Y 1 A CD GLN 548 A CD GLN 140 1 Y 1 A OE1 GLN 548 A OE1 GLN 140 1 Y 1 A NE2 GLN 548 A NE2 GLN 140 1 Y 1 A CA SER 549 A CA SER 141 1 Y 1 A C SER 549 A C SER 141 1 Y 1 A O SER 549 A O SER 141 1 Y 1 A CB SER 549 A CB SER 141 1 Y 1 A OG SER 549 A OG SER 141 1 Y 1 A GLY 409 A GLY 1 1 Y 1 A HIS 550 A HIS 142 1 Y 1 A PRO 551 A PRO 143 1 Y 1 A ASP 552 A ASP 144 1 Y 1 A ALA 553 A ALA 145 1 Y 1 A ALA 554 A ALA 146 1 Y 1 A VAL 555 A VAL 147 1 Y 1 A GLN 556 A GLN 148 1 Y 1 5.42 0.90 118.30 123.72 A A A CB CG OD1 ASP ASP ASP 464 464 464 N 1 -3.60 0.50 120.30 116.70 A A A NE CZ NH2 ARG ARG ARG 472 472 472 N 1 A GLN 429 -99.73 52.95 1 A GLU 480 -39.20 143.53 1 A GLN 548 121.69 -70.98 21.05 0.12000 0.00000 0.00000 -0.64000 0.00000 0.52000 0.966 0.952 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. DISORDERED RESIDUES WERE MODELLED AS ALA OR WITH OCCU 0.01. THE C-TERMINUS IS DISORDERED. 0.215 0.173 0.175 1.80 25.00 609 14309 4.100 99.5 2.765 0.084 RANDOM LIKELY RESIDUAL 1 THROUGHOUT MOLECULAR REPLACEMENT 0.121 0.120 0.80 0.80 1.40 PDB ENTRY 1W1D MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 1.80 25.00 112 1295 11 0 1172 0.016 0.021 1242 0.002 0.020 1101 1.681 1.944 1677 0.904 3.000 2566 7.298 5.000 138 0.106 0.200 170 0.010 0.020 1354 0.011 0.020 271 0.216 0.200 215 0.253 0.200 1257 0.086 0.200 730 0.160 0.200 89 0.190 0.200 17 0.312 0.200 79 0.117 0.200 12 0.983 1.500 700 1.780 2.000 1137 2.542 3.000 542 4.059 4.500 540 0.3480 0.2680 1.84 45 1000 20 1.80 25.00 2VKI 14950 2.0 0.06 1 10.00 4.5 100.0 0.55 1.80 1.86 2.30 1 4.3 100.0 refinement REFMAC 5.1.24 data reduction DENZO data scaling SCALEPACK phasing AMoRE Structure of the PDK1 PH domain K465E mutant 1 N N 2 N N 3 N N 4 N N A ASN 411 A ASN 3 HELX_P A GLN 414 A GLN 6 5 1 4 A SER 431 A SER 23 HELX_P A ASN 446 A ASN 38 1 2 16 A TRP 448 A TRP 40 HELX_P A VAL 452 A VAL 44 5 3 5 A ASN 531 A ASN 123 HELX_P A GLN 548 A GLN 140 1 4 18 TRANSFERASE PLECKSTRIN HOMOLOGY, TRANSFERASE, CANCER, DIABETES A GLY 481 A GLY 73 1 A PRO 482 A PRO 74 -4.30 PDPK1_HUMAN UNP 1 O15530 409 556 2VKI 409 556 O15530 A 1 1 148 1 LYS engineered mutation GLU 465 2VKI A O15530 UNP 465 57 6 6 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ILE 416 A ILE 8 A ASP 420 A ASP 12 A SER 423 A SER 15 A LEU 426 A LEU 18 A ILE 457 A ILE 49 A GLU 465 A GLU 57 A ARG 472 A ARG 64 A THR 479 A THR 71 A HIS 483 A HIS 75 A ASP 488 A ASP 80 A VAL 493 A VAL 85 A ILE 498 A ILE 90 A ILE 416 A ILE 8 A ASP 420 A ASP 12 A SER 423 A SER 15 A LEU 426 A LEU 18 A ILE 457 A ILE 49 A GLU 465 A GLU 57 A ARG 521 A ARG 113 A MET 526 A MET 118 A THR 513 A THR 105 A THR 518 A THR 110 A ARG 505 A ARG 97 A ALA 508 A ALA 100 BINDING SITE FOR RESIDUE GOL A1549 Software 4 BINDING SITE FOR RESIDUE SO4 A1550 Software 3 A SER 431 A SER 23 4 1_555 A GLU 432 A GLU 24 4 1_555 A ASP 433 A ASP 25 4 1_555 A ARG 521 A ARG 113 4 1_555 A LYS 467 A LYS 59 3 1_555 A ARG 472 A ARG 64 3 1_555 A ARG 474 A ARG 66 3 1_555 19 P 21 21 21