0.009459
0.000000
0.000000
0.000000
0.009459
0.000000
0.000000
0.000000
0.019444
0.00000
0.00000
0.00000
Fiedler, M.
Sanchez-Barrena, M.J.
Nekrasov, M.
Mieszczanek, J.
Rybin, V.
Muller, J.
Evans, P.
Bienz, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
105.720
105.720
51.430
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H18 N2 O2
174.241
n
N-DIMETHYL-LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
C
N
138
N
O
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
N
N
152
S
C
N
153
N
C
N
154
N
O
N
155
N
C
Y
156
N
C
Y
157
N
N
Y
158
N
C
Y
159
N
C
Y
160
N
N
N
161
N
O
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
N
N
176
S
C
N
177
N
C
N
178
N
O
N
179
S
C
N
180
N
C
N
181
N
C
N
182
N
C
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
N
N
198
S
C
N
199
N
C
N
200
N
O
N
201
N
C
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
N
N
220
S
C
N
221
N
C
N
222
N
O
N
223
N
C
N
224
N
C
N
225
N
C
N
226
N
C
N
227
N
N
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
N
N
245
S
C
N
246
N
C
N
247
N
O
N
248
N
C
N
249
N
C
N
250
N
S
N
251
N
C
N
252
N
O
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
N
N
265
S
C
N
266
N
C
N
267
N
C
N
268
N
C
N
269
N
C
N
270
N
N
N
271
N
C
N
272
N
C
N
273
N
C
N
274
N
O
N
275
N
O
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
N
N
295
S
C
N
296
N
C
N
297
N
O
N
298
N
C
Y
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
Y
304
N
C
N
305
N
O
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
N
N
318
S
C
N
319
N
C
N
320
N
O
N
321
N
C
N
322
N
C
N
323
N
C
N
324
N
O
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
N
339
N
O
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
R
C
N
353
N
O
N
354
N
C
N
355
N
O
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
N
N
366
S
C
N
367
N
C
N
368
N
O
N
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
N
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
N
N
393
S
C
N
394
N
C
N
395
N
O
N
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
N
403
N
O
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
N
C
N
421
N
C
N
422
N
C
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
Y
153
N
sing
Y
154
N
doub
Y
155
N
doub
N
156
N
sing
Y
157
N
sing
N
158
N
sing
Y
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
doub
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
Y
290
N
doub
Y
291
N
sing
Y
292
N
sing
N
293
N
sing
Y
294
N
doub
N
295
N
sing
Y
296
N
doub
N
297
N
sing
Y
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
doub
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
doub
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
Y
359
N
doub
Y
360
N
sing
Y
361
N
sing
N
362
N
sing
Y
363
N
doub
Y
364
N
sing
Y
365
N
sing
N
366
N
sing
Y
367
N
sing
Y
368
N
doub
N
369
N
sing
Y
370
N
doub
N
371
N
sing
Y
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
doub
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
Y
387
N
doub
Y
388
N
sing
Y
389
N
sing
N
390
N
sing
Y
391
N
doub
N
392
N
sing
Y
393
N
doub
N
394
N
sing
Y
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
doub
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
US
Mol.Cell
MOCEFL
2168
1097-2765
30
507
10.1016/J.MOLCEL.2008.03.011
18498752
Decoding of Methylated Histone H3 Tail by the Pygo- Bcl9 Wnt Signaling Complex.
2008
10.2210/pdb2vpe/pdb
pdb_00002vpe
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
KIRKPATRICK BAEZ BIMORPH MIRROR PAIR FOR HORIZONTAL AND VERTICAL FOCUSSING
CCD
2007-09-21
ADSC CCD
SI (111) DOUBLE CRYSTAL MONOCHROMATOR
SINGLE WAVELENGTH
M
x-ray
1
1.06
1.0
I03
Diamond
1.06
SYNCHROTRON
DIAMOND BEAMLINE I03
6759.612
PYGOPUS HOMOLOG 1
PHD DOMAIN, RESIDUES 340-398
2
man
polymer
3444.991
B-CELL CLL/LYMPHOMA 9 PROTEIN
HD1 DOMAIN, RESIDUES 177-205
2
man
polymer
9-MER H3K4ME2, DIMETHYLATION AT LYS K4
803.927
HISTONE H3 TAIL
2
syn
polymer
92.094
GLYCEROL
1
syn
non-polymer
65.409
ZINC ION
4
syn
non-polymer
18.015
water
205
nat
water
HPYGO1
B-CELL LYMPHOMA 9 PROTEIN, BCL-9, PROTEIN LEGLESS HOMOLOG, BCL9
no
no
GAMAVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMAD
GAMAVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMAD
A,C
polypeptide(L)
no
no
GAMVYVFSTEMANKAAEAVLKGQVETIVSFHI
GAMVYVFSTEMANKAAEAVLKGQVETIVSFHI
B,D
polypeptide(L)
no
yes
ART(MLY)QTA
ARTKQTA
P,R
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
9606
HOMO SAPIENS
511693
ESCHERICHIA COLI
BL21
CODONPLUS(DE3)-RIL
BI-CISTRONIC EXPRESSION VECTOR
HUMAN
sample
9606
HOMO SAPIENS
511693
ESCHERICHIA COLI
BL21
CODONPLUS(DE3)-RIL
BI-CISTRONIC EXPRESSION VECTOR
1
3.1
60.31
CRYSTALLOGRAPHIC DATA WERE COLLECTED AT DIAMOND SYNCHROTRON, OXFORD, UK
VAPOR DIFFUSION, HANGING DROP
HANGING-DROP VAPOUR-DIFFUSION METHOD AT 19 CELSIUS. 26.4% PEG-3350, 200MM LISO4, 100MM TRIS PH7
292
exptl_crystal_grow
pdbx_database_proc
pdbx_database_status
struct_conn
exptl_crystal_grow
struct_biol
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_conn_type
repository
Initial release
Version format compliance
Version format compliance
Data collection
Derived calculations
Experimental preparation
Other
Data collection
Experimental preparation
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2008-06-17
1
1
2011-05-08
1
2
2011-07-13
1
3
2019-05-08
1
4
2019-05-29
1
5
2023-12-13
_exptl_crystal_grow.temp
_pdbx_database_status.recvd_author_approval
_struct_conn.pdbx_leaving_atom_flag
_exptl_crystal_grow.method
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
DECODING OF METHYLATED HISTONE H3 TAIL BY THE PYGO-BCL9 WNT SIGNALING COMPLEX
DECODING OF METHYLATED HISTONE H3 TAIL BY THE PYGO-BCL9 WNT SIGNALING COMPLEX
DECODING OF METHYLATED HISTONE H3 TAIL BY THE PYGO-BCL9 WNT SIGNALING COMPLEX
DECODING OF METHYLATED HISTONE H3 TAIL BY THE PYGO-BCL9 WNT SIGNALING COMPLEX
PDBE
Y
PDBE
2008-02-27
REL
REL
GOL
GLYCEROL
ZN
ZINC ION
HOH
water
9606
HUMAN
HOMO SAPIENS
sample
2VPB
PDB ENTRY 2VPB
PDB
experimental model
GOL
1399
4
GOL
GOL
1399
A
ZN
1400
5
ZN
ZN
1400
A
ZN
1401
5
ZN
ZN
1401
A
ZN
1398
5
ZN
ZN
1398
C
ZN
1399
5
ZN
ZN
1399
C
HOH
2001
6
HOH
HOH
2001
A
HOH
2002
6
HOH
HOH
2002
A
HOH
2003
6
HOH
HOH
2003
A
HOH
2004
6
HOH
HOH
2004
A
HOH
2005
6
HOH
HOH
2005
A
HOH
2006
6
HOH
HOH
2006
A
HOH
2007
6
HOH
HOH
2007
A
HOH
2008
6
HOH
HOH
2008
A
HOH
2009
6
HOH
HOH
2009
A
HOH
2010
6
HOH
HOH
2010
A
HOH
2011
6
HOH
HOH
2011
A
HOH
2012
6
HOH
HOH
2012
A
HOH
2013
6
HOH
HOH
2013
A
HOH
2014
6
HOH
HOH
2014
A
HOH
2015
6
HOH
HOH
2015
A
HOH
2016
6
HOH
HOH
2016
A
HOH
2017
6
HOH
HOH
2017
A
HOH
2018
6
HOH
HOH
2018
A
HOH
2019
6
HOH
HOH
2019
A
HOH
2020
6
HOH
HOH
2020
A
HOH
2021
6
HOH
HOH
2021
A
HOH
2022
6
HOH
HOH
2022
A
HOH
2023
6
HOH
HOH
2023
A
HOH
2024
6
HOH
HOH
2024
A
HOH
2025
6
HOH
HOH
2025
A
HOH
2026
6
HOH
HOH
2026
A
HOH
2027
6
HOH
HOH
2027
A
HOH
2028
6
HOH
HOH
2028
A
HOH
2029
6
HOH
HOH
2029
A
HOH
2030
6
HOH
HOH
2030
A
HOH
2031
6
HOH
HOH
2031
A
HOH
2032
6
HOH
HOH
2032
A
HOH
2033
6
HOH
HOH
2033
A
HOH
2034
6
HOH
HOH
2034
A
HOH
2035
6
HOH
HOH
2035
A
HOH
2036
6
HOH
HOH
2036
A
HOH
2037
6
HOH
HOH
2037
A
HOH
2038
6
HOH
HOH
2038
A
HOH
2039
6
HOH
HOH
2039
A
HOH
2040
6
HOH
HOH
2040
A
HOH
2041
6
HOH
HOH
2041
A
HOH
2042
6
HOH
HOH
2042
A
HOH
2043
6
HOH
HOH
2043
A
HOH
2044
6
HOH
HOH
2044
A
HOH
2045
6
HOH
HOH
2045
A
HOH
2046
6
HOH
HOH
2046
A
HOH
2047
6
HOH
HOH
2047
A
HOH
2048
6
HOH
HOH
2048
A
HOH
2049
6
HOH
HOH
2049
A
HOH
2050
6
HOH
HOH
2050
A
HOH
2051
6
HOH
HOH
2051
A
HOH
2052
6
HOH
HOH
2052
A
HOH
2053
6
HOH
HOH
2053
A
HOH
2054
6
HOH
HOH
2054
A
HOH
2055
6
HOH
HOH
2055
A
HOH
2056
6
HOH
HOH
2056
A
HOH
2057
6
HOH
HOH
2057
A
HOH
2058
6
HOH
HOH
2058
A
HOH
2059
6
HOH
HOH
2059
A
HOH
2060
6
HOH
HOH
2060
A
HOH
2061
6
HOH
HOH
2061
A
HOH
2062
6
HOH
HOH
2062
A
HOH
2063
6
HOH
HOH
2063
A
HOH
2064
6
HOH
HOH
2064
A
HOH
2065
6
HOH
HOH
2065
A
HOH
2066
6
HOH
HOH
2066
A
HOH
2067
6
HOH
HOH
2067
A
HOH
2068
6
HOH
HOH
2068
A
HOH
2069
6
HOH
HOH
2069
A
HOH
2070
6
HOH
HOH
2070
A
HOH
2071
6
HOH
HOH
2071
A
HOH
2072
6
HOH
HOH
2072
A
HOH
2073
6
HOH
HOH
2073
A
HOH
2074
6
HOH
HOH
2074
A
HOH
2075
6
HOH
HOH
2075
A
HOH
2076
6
HOH
HOH
2076
A
HOH
2077
6
HOH
HOH
2077
A
HOH
2078
6
HOH
HOH
2078
A
HOH
2001
6
HOH
HOH
2001
B
HOH
2002
6
HOH
HOH
2002
B
HOH
2003
6
HOH
HOH
2003
B
HOH
2004
6
HOH
HOH
2004
B
HOH
2005
6
HOH
HOH
2005
B
HOH
2006
6
HOH
HOH
2006
B
HOH
2007
6
HOH
HOH
2007
B
HOH
2008
6
HOH
HOH
2008
B
HOH
2009
6
HOH
HOH
2009
B
HOH
2010
6
HOH
HOH
2010
B
HOH
2011
6
HOH
HOH
2011
B
HOH
2012
6
HOH
HOH
2012
B
HOH
2013
6
HOH
HOH
2013
B
HOH
2014
6
HOH
HOH
2014
B
HOH
2015
6
HOH
HOH
2015
B
HOH
2016
6
HOH
HOH
2016
B
HOH
2017
6
HOH
HOH
2017
B
HOH
2018
6
HOH
HOH
2018
B
HOH
2019
6
HOH
HOH
2019
B
HOH
2020
6
HOH
HOH
2020
B
HOH
2021
6
HOH
HOH
2021
B
HOH
2022
6
HOH
HOH
2022
B
HOH
2023
6
HOH
HOH
2023
B
HOH
2024
6
HOH
HOH
2024
B
HOH
2025
6
HOH
HOH
2025
B
HOH
2026
6
HOH
HOH
2026
B
HOH
2027
6
HOH
HOH
2027
B
HOH
2028
6
HOH
HOH
2028
B
HOH
2029
6
HOH
HOH
2029
B
HOH
2030
6
HOH
HOH
2030
B
HOH
2001
6
HOH
HOH
2001
C
HOH
2002
6
HOH
HOH
2002
C
HOH
2003
6
HOH
HOH
2003
C
HOH
2004
6
HOH
HOH
2004
C
HOH
2005
6
HOH
HOH
2005
C
HOH
2006
6
HOH
HOH
2006
C
HOH
2007
6
HOH
HOH
2007
C
HOH
2008
6
HOH
HOH
2008
C
HOH
2009
6
HOH
HOH
2009
C
HOH
2010
6
HOH
HOH
2010
C
HOH
2011
6
HOH
HOH
2011
C
HOH
2012
6
HOH
HOH
2012
C
HOH
2013
6
HOH
HOH
2013
C
HOH
2014
6
HOH
HOH
2014
C
HOH
2015
6
HOH
HOH
2015
C
HOH
2016
6
HOH
HOH
2016
C
HOH
2017
6
HOH
HOH
2017
C
HOH
2018
6
HOH
HOH
2018
C
HOH
2019
6
HOH
HOH
2019
C
HOH
2020
6
HOH
HOH
2020
C
HOH
2021
6
HOH
HOH
2021
C
HOH
2022
6
HOH
HOH
2022
C
HOH
2023
6
HOH
HOH
2023
C
HOH
2024
6
HOH
HOH
2024
C
HOH
2025
6
HOH
HOH
2025
C
HOH
2026
6
HOH
HOH
2026
C
HOH
2027
6
HOH
HOH
2027
C
HOH
2028
6
HOH
HOH
2028
C
HOH
2029
6
HOH
HOH
2029
C
HOH
2030
6
HOH
HOH
2030
C
HOH
2031
6
HOH
HOH
2031
C
HOH
2032
6
HOH
HOH
2032
C
HOH
2033
6
HOH
HOH
2033
C
HOH
2034
6
HOH
HOH
2034
C
HOH
2035
6
HOH
HOH
2035
C
HOH
2036
6
HOH
HOH
2036
C
HOH
2037
6
HOH
HOH
2037
C
HOH
2038
6
HOH
HOH
2038
C
HOH
2039
6
HOH
HOH
2039
C
HOH
2040
6
HOH
HOH
2040
C
HOH
2041
6
HOH
HOH
2041
C
HOH
2042
6
HOH
HOH
2042
C
HOH
2043
6
HOH
HOH
2043
C
HOH
2044
6
HOH
HOH
2044
C
HOH
2045
6
HOH
HOH
2045
C
HOH
2046
6
HOH
HOH
2046
C
HOH
2047
6
HOH
HOH
2047
C
HOH
2048
6
HOH
HOH
2048
C
HOH
2049
6
HOH
HOH
2049
C
HOH
2050
6
HOH
HOH
2050
C
HOH
2051
6
HOH
HOH
2051
C
HOH
2052
6
HOH
HOH
2052
C
HOH
2053
6
HOH
HOH
2053
C
HOH
2054
6
HOH
HOH
2054
C
HOH
2055
6
HOH
HOH
2055
C
HOH
2056
6
HOH
HOH
2056
C
HOH
2057
6
HOH
HOH
2057
C
HOH
2058
6
HOH
HOH
2058
C
HOH
2059
6
HOH
HOH
2059
C
HOH
2060
6
HOH
HOH
2060
C
HOH
2061
6
HOH
HOH
2061
C
HOH
2001
6
HOH
HOH
2001
D
HOH
2002
6
HOH
HOH
2002
D
HOH
2003
6
HOH
HOH
2003
D
HOH
2004
6
HOH
HOH
2004
D
HOH
2006
6
HOH
HOH
2006
D
HOH
2007
6
HOH
HOH
2007
D
HOH
2008
6
HOH
HOH
2008
D
HOH
2009
6
HOH
HOH
2009
D
HOH
2010
6
HOH
HOH
2010
D
HOH
2011
6
HOH
HOH
2011
D
HOH
2012
6
HOH
HOH
2012
D
HOH
2013
6
HOH
HOH
2013
D
HOH
2014
6
HOH
HOH
2014
D
HOH
2015
6
HOH
HOH
2015
D
HOH
2016
6
HOH
HOH
2016
D
HOH
2017
6
HOH
HOH
2017
D
HOH
2018
6
HOH
HOH
2018
D
HOH
2019
6
HOH
HOH
2019
D
HOH
2020
6
HOH
HOH
2020
D
HOH
2021
6
HOH
HOH
2021
D
HOH
2022
6
HOH
HOH
2022
D
HOH
2001
6
HOH
HOH
2001
P
HOH
2002
6
HOH
HOH
2002
P
HOH
2003
6
HOH
HOH
2003
P
HOH
2004
6
HOH
HOH
2004
P
HOH
2005
6
HOH
HOH
2005
P
HOH
2006
6
HOH
HOH
2006
P
HOH
2007
6
HOH
HOH
2007
P
HOH
2008
6
HOH
HOH
2008
P
HOH
2009
6
HOH
HOH
2009
P
HOH
2001
6
HOH
HOH
2001
R
HOH
2002
6
HOH
HOH
2002
R
HOH
2003
6
HOH
HOH
2003
R
HOH
2004
6
HOH
HOH
2004
R
HOH
2005
6
HOH
HOH
2005
R
HOH
2006
6
HOH
HOH
2006
R
n
1
336
A
n
2
337
A
MET
338
n
3
MET
338
A
ALA
339
n
4
ALA
339
A
VAL
340
n
5
VAL
340
A
TYR
341
n
6
TYR
341
A
PRO
342
n
7
PRO
342
A
CYS
343
n
8
CYS
343
A
GLY
344
n
9
GLY
344
A
ILE
345
n
10
ILE
345
A
CYS
346
n
11
CYS
346
A
THR
347
n
12
THR
347
A
ASN
348
n
13
ASN
348
A
GLU
349
n
14
GLU
349
A
VAL
350
n
15
VAL
350
A
ASN
351
n
16
ASN
351
A
ASP
352
n
17
ASP
352
A
ASP
353
n
18
ASP
353
A
GLN
354
n
19
GLN
354
A
ASP
355
n
20
ASP
355
A
ALA
356
n
21
ALA
356
A
ILE
357
n
22
ILE
357
A
LEU
358
n
23
LEU
358
A
CYS
359
n
24
CYS
359
A
GLU
360
n
25
GLU
360
A
ALA
361
n
26
ALA
361
A
SER
362
n
27
SER
362
A
CYS
363
n
28
CYS
363
A
GLN
364
n
29
GLN
364
A
LYS
365
n
30
LYS
365
A
TRP
366
n
31
TRP
366
A
PHE
367
n
32
PHE
367
A
HIS
368
n
33
HIS
368
A
ARG
369
n
34
ARG
369
A
ILE
370
n
35
ILE
370
A
CYS
371
n
36
CYS
371
A
THR
372
n
37
THR
372
A
GLY
373
n
38
GLY
373
A
MET
374
n
39
MET
374
A
THR
375
n
40
THR
375
A
GLU
376
n
41
GLU
376
A
THR
377
n
42
THR
377
A
ALA
378
n
43
ALA
378
A
TYR
379
n
44
TYR
379
A
GLY
380
n
45
GLY
380
A
LEU
381
n
46
LEU
381
A
LEU
382
n
47
LEU
382
A
THR
383
n
48
THR
383
A
ALA
384
n
49
ALA
384
A
GLU
385
n
50
GLU
385
A
ALA
386
n
51
ALA
386
A
SER
387
n
52
SER
387
A
ALA
388
n
53
ALA
388
A
VAL
389
n
54
VAL
389
A
TRP
390
n
55
TRP
390
A
GLY
391
n
56
GLY
391
A
CYS
392
n
57
CYS
392
A
ASP
393
n
58
ASP
393
A
THR
394
n
59
THR
394
A
CYS
395
n
60
CYS
395
A
MET
396
n
61
MET
396
A
ALA
397
n
62
ALA
397
A
ASP
398
n
63
ASP
398
A
GLY
174
n
1
GLY
174
B
ALA
175
n
2
ALA
175
B
MET
176
n
3
MET
176
B
VAL
177
n
4
VAL
177
B
TYR
178
n
5
TYR
178
B
VAL
179
n
6
VAL
179
B
PHE
180
n
7
PHE
180
B
SER
181
n
8
SER
181
B
THR
182
n
9
THR
182
B
GLU
183
n
10
GLU
183
B
MET
184
n
11
MET
184
B
ALA
185
n
12
ALA
185
B
ASN
186
n
13
ASN
186
B
LYS
187
n
14
LYS
187
B
ALA
188
n
15
ALA
188
B
ALA
189
n
16
ALA
189
B
GLU
190
n
17
GLU
190
B
ALA
191
n
18
ALA
191
B
VAL
192
n
19
VAL
192
B
LEU
193
n
20
LEU
193
B
LYS
194
n
21
LYS
194
B
GLY
195
n
22
GLY
195
B
GLN
196
n
23
GLN
196
B
VAL
197
n
24
VAL
197
B
GLU
198
n
25
GLU
198
B
THR
199
n
26
THR
199
B
ILE
200
n
27
ILE
200
B
VAL
201
n
28
VAL
201
B
SER
202
n
29
SER
202
B
PHE
203
n
30
PHE
203
B
n
31
204
B
n
32
205
B
GLY
336
n
1
GLY
336
C
ALA
337
n
2
ALA
337
C
MET
338
n
3
MET
338
C
ALA
339
n
4
ALA
339
C
VAL
340
n
5
VAL
340
C
TYR
341
n
6
TYR
341
C
PRO
342
n
7
PRO
342
C
CYS
343
n
8
CYS
343
C
GLY
344
n
9
GLY
344
C
ILE
345
n
10
ILE
345
C
CYS
346
n
11
CYS
346
C
THR
347
n
12
THR
347
C
ASN
348
n
13
ASN
348
C
GLU
349
n
14
GLU
349
C
VAL
350
n
15
VAL
350
C
ASN
351
n
16
ASN
351
C
ASP
352
n
17
ASP
352
C
ASP
353
n
18
ASP
353
C
GLN
354
n
19
GLN
354
C
ASP
355
n
20
ASP
355
C
ALA
356
n
21
ALA
356
C
ILE
357
n
22
ILE
357
C
LEU
358
n
23
LEU
358
C
CYS
359
n
24
CYS
359
C
GLU
360
n
25
GLU
360
C
ALA
361
n
26
ALA
361
C
SER
362
n
27
SER
362
C
CYS
363
n
28
CYS
363
C
GLN
364
n
29
GLN
364
C
LYS
365
n
30
LYS
365
C
TRP
366
n
31
TRP
366
C
PHE
367
n
32
PHE
367
C
HIS
368
n
33
HIS
368
C
ARG
369
n
34
ARG
369
C
ILE
370
n
35
ILE
370
C
CYS
371
n
36
CYS
371
C
THR
372
n
37
THR
372
C
GLY
373
n
38
GLY
373
C
MET
374
n
39
MET
374
C
THR
375
n
40
THR
375
C
GLU
376
n
41
GLU
376
C
THR
377
n
42
THR
377
C
ALA
378
n
43
ALA
378
C
TYR
379
n
44
TYR
379
C
GLY
380
n
45
GLY
380
C
LEU
381
n
46
LEU
381
C
LEU
382
n
47
LEU
382
C
THR
383
n
48
THR
383
C
ALA
384
n
49
ALA
384
C
GLU
385
n
50
GLU
385
C
ALA
386
n
51
ALA
386
C
SER
387
n
52
SER
387
C
ALA
388
n
53
ALA
388
C
VAL
389
n
54
VAL
389
C
TRP
390
n
55
TRP
390
C
GLY
391
n
56
GLY
391
C
CYS
392
n
57
CYS
392
C
ASP
393
n
58
ASP
393
C
THR
394
n
59
THR
394
C
CYS
395
n
60
CYS
395
C
MET
396
n
61
MET
396
C
ALA
397
n
62
ALA
397
C
n
63
398
C
GLY
174
n
1
GLY
174
D
ALA
175
n
2
ALA
175
D
MET
176
n
3
MET
176
D
VAL
177
n
4
VAL
177
D
TYR
178
n
5
TYR
178
D
VAL
179
n
6
VAL
179
D
PHE
180
n
7
PHE
180
D
SER
181
n
8
SER
181
D
THR
182
n
9
THR
182
D
GLU
183
n
10
GLU
183
D
MET
184
n
11
MET
184
D
ALA
185
n
12
ALA
185
D
ASN
186
n
13
ASN
186
D
LYS
187
n
14
LYS
187
D
ALA
188
n
15
ALA
188
D
ALA
189
n
16
ALA
189
D
GLU
190
n
17
GLU
190
D
ALA
191
n
18
ALA
191
D
VAL
192
n
19
VAL
192
D
LEU
193
n
20
LEU
193
D
LYS
194
n
21
LYS
194
D
GLY
195
n
22
GLY
195
D
GLN
196
n
23
GLN
196
D
VAL
197
n
24
VAL
197
D
GLU
198
n
25
GLU
198
D
THR
199
n
26
THR
199
D
ILE
200
n
27
ILE
200
D
VAL
201
n
28
VAL
201
D
SER
202
n
29
SER
202
D
n
30
203
D
n
31
204
D
n
32
205
D
ALA
1
n
1
ALA
1
P
ARG
2
n
2
ARG
2
P
THR
3
n
3
THR
3
P
MLY
4
n
4
MLY
4
P
GLN
5
n
5
GLN
5
P
THR
6
n
6
THR
6
P
ALA
7
n
7
ALA
7
P
ALA
1
n
1
ALA
1
R
ARG
2
n
2
ARG
2
R
THR
3
n
3
THR
3
R
MLY
4
n
4
MLY
4
R
GLN
5
n
5
GLN
5
R
THR
6
n
6
THR
6
R
ALA
7
n
7
ALA
7
R
author_and_software_defined_assembly
PQS
3
trimeric
author_and_software_defined_assembly
PQS
3
trimeric
2550
-20
7490
2460
-19
7500
A
CYS
343
A
SG
CYS
8
1_555
A
ZN
1400
H
ZN
ZN
1_555
A
CYS
346
A
SG
CYS
11
1_555
108.2
A
CYS
343
A
SG
CYS
8
1_555
A
ZN
1400
H
ZN
ZN
1_555
A
HIS
368
A
ND1
HIS
33
1_555
102.0
A
CYS
346
A
SG
CYS
11
1_555
A
ZN
1400
H
ZN
ZN
1_555
A
HIS
368
A
ND1
HIS
33
1_555
98.7
A
CYS
343
A
SG
CYS
8
1_555
A
ZN
1400
H
ZN
ZN
1_555
A
CYS
371
A
SG
CYS
36
1_555
119.2
A
CYS
346
A
SG
CYS
11
1_555
A
ZN
1400
H
ZN
ZN
1_555
A
CYS
371
A
SG
CYS
36
1_555
109.6
A
HIS
368
A
ND1
HIS
33
1_555
A
ZN
1400
H
ZN
ZN
1_555
A
CYS
371
A
SG
CYS
36
1_555
116.9
A
CYS
359
A
SG
CYS
24
1_555
A
ZN
1401
I
ZN
ZN
1_555
A
CYS
363
A
SG
CYS
28
1_555
106.1
A
CYS
359
A
SG
CYS
24
1_555
A
ZN
1401
I
ZN
ZN
1_555
A
CYS
392
A
SG
CYS
57
1_555
115.7
A
CYS
363
A
SG
CYS
28
1_555
A
ZN
1401
I
ZN
ZN
1_555
A
CYS
392
A
SG
CYS
57
1_555
116.5
A
CYS
359
A
SG
CYS
24
1_555
A
ZN
1401
I
ZN
ZN
1_555
A
CYS
395
A
SG
CYS
60
1_555
110.7
A
CYS
363
A
SG
CYS
28
1_555
A
ZN
1401
I
ZN
ZN
1_555
A
CYS
395
A
SG
CYS
60
1_555
107.1
A
CYS
392
A
SG
CYS
57
1_555
A
ZN
1401
I
ZN
ZN
1_555
A
CYS
395
A
SG
CYS
60
1_555
100.3
C
CYS
343
C
SG
CYS
8
1_555
C
ZN
1398
J
ZN
ZN
1_555
C
CYS
346
C
SG
CYS
11
1_555
109.2
C
CYS
343
C
SG
CYS
8
1_555
C
ZN
1398
J
ZN
ZN
1_555
C
HIS
368
C
ND1
HIS
33
1_555
101.7
C
CYS
346
C
SG
CYS
11
1_555
C
ZN
1398
J
ZN
ZN
1_555
C
HIS
368
C
ND1
HIS
33
1_555
97.5
C
CYS
343
C
SG
CYS
8
1_555
C
ZN
1398
J
ZN
ZN
1_555
C
CYS
371
C
SG
CYS
36
1_555
118.6
C
CYS
346
C
SG
CYS
11
1_555
C
ZN
1398
J
ZN
ZN
1_555
C
CYS
371
C
SG
CYS
36
1_555
112.2
C
HIS
368
C
ND1
HIS
33
1_555
C
ZN
1398
J
ZN
ZN
1_555
C
CYS
371
C
SG
CYS
36
1_555
115.3
C
CYS
359
C
SG
CYS
24
1_555
C
ZN
1399
K
ZN
ZN
1_555
C
CYS
363
C
SG
CYS
28
1_555
105.4
C
CYS
359
C
SG
CYS
24
1_555
C
ZN
1399
K
ZN
ZN
1_555
C
CYS
392
C
SG
CYS
57
1_555
114.7
C
CYS
363
C
SG
CYS
28
1_555
C
ZN
1399
K
ZN
ZN
1_555
C
CYS
392
C
SG
CYS
57
1_555
116.3
C
CYS
359
C
SG
CYS
24
1_555
C
ZN
1399
K
ZN
ZN
1_555
C
CYS
395
C
SG
CYS
60
1_555
112.7
C
CYS
363
C
SG
CYS
28
1_555
C
ZN
1399
K
ZN
ZN
1_555
C
CYS
395
C
SG
CYS
60
1_555
109.1
C
CYS
392
C
SG
CYS
57
1_555
C
ZN
1399
K
ZN
ZN
1_555
C
CYS
395
C
SG
CYS
60
1_555
98.6
P
MLY
4
N-DIMETHYL-LYSINE
E
MLY
4
LYS
R
MLY
4
N-DIMETHYL-LYSINE
F
MLY
4
LYS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
357
A
N
ILE
22
A
O
PHE
367
A
O
PHE
32
A
N
VAL
389
A
N
VAL
54
B
O
TYR
178
B
O
TYR
5
C
N
ILE
357
C
N
ILE
22
C
O
PHE
367
C
O
PHE
32
C
N
VAL
389
C
N
VAL
54
D
O
TYR
178
D
O
TYR
5
1
A
GLY
336
A
GLY
1
1
Y
1
A
ALA
337
A
ALA
2
1
Y
1
B
HIS
204
B
HIS
31
1
Y
1
B
ILE
205
B
ILE
32
1
Y
1
C
ASP
398
C
ASP
63
1
Y
1
D
PHE
203
D
PHE
30
1
Y
1
D
HIS
204
D
HIS
31
1
Y
1
D
ILE
205
D
ILE
32
1
Y
1
A
THR
347
74.07
-5.38
1
A
SER
362
-159.86
-71.20
1
C
ILE
345
-104.97
-60.95
1
C
THR
347
73.04
-1.99
1
C
SER
362
-154.04
-66.97
28.81
0.64000
0.00000
0.00000
0.64000
0.00000
-1.29000
0.961
0.944
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
0.230
0.193
0.195
1.70
106.00
1655
30994
5.100
99.9
1.965
0.065
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.088
0.093
0.80
0.80
1.20
PDB ENTRY 2VPB
MAXIMUM LIKELIHOOD
MASK
1.70
106.00
205
1669
10
0
1454
0.011
0.022
1496
1.197
1.938
2024
5.669
5.000
194
33.458
25.424
59
11.476
15.000
236
17.174
15.000
5
0.088
0.200
240
0.004
0.020
1092
0.199
0.200
727
0.299
0.200
1046
0.125
0.200
139
0.167
0.200
85
0.116
0.200
31
0.921
1.500
994
1.567
2.000
1553
2.252
3.000
573
3.642
4.500
471
0.3810
0.2950
1.74
110
2241
20
1.70
42.37
2VPE
30994
2.0
0.12
1
12.40
10.3
100.0
1.21
1.70
1.79
2.20
1
10.2
100.0
refinement
REFMAC
5.3.0037
data reduction
MOSFLM
data scaling
SCALA
phasing
PHASER
Decoding of methylated histone H3 tail by the Pygo-BCL9 Wnt signaling complex
1
N
N
2
N
N
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
5
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
A
ARG
369
A
ARG
34
HELX_P
A
GLY
373
A
GLY
38
1
1
5
A
THR
375
A
THR
40
HELX_P
A
GLU
385
A
GLU
50
1
2
11
A
CYS
392
A
CYS
57
HELX_P
A
ASP
398
A
ASP
63
1
3
7
B
SER
181
B
SER
8
HELX_P
B
LYS
194
B
LYS
21
1
4
14
C
ARG
369
C
ARG
34
HELX_P
C
GLY
373
C
GLY
38
1
5
5
C
THR
375
C
THR
40
HELX_P
C
GLU
385
C
GLU
50
1
6
11
C
CYS
392
C
CYS
57
HELX_P
C
ALA
397
C
ALA
62
1
7
6
D
SER
181
D
SER
8
HELX_P
D
LYS
194
D
LYS
21
1
8
14
covale
1.331
both
P
THR
3
E
C
THR
3
1_555
P
MLY
4
E
N
MLY
4
1_555
covale
1.335
both
P
MLY
4
E
C
MLY
4
1_555
P
GLN
5
E
N
GLN
5
1_555
covale
1.331
both
R
THR
3
F
C
THR
3
1_555
R
MLY
4
F
N
MLY
4
1_555
covale
1.330
both
R
MLY
4
F
C
MLY
4
1_555
R
GLN
5
F
N
GLN
5
1_555
metalc
2.321
A
CYS
343
A
SG
CYS
8
1_555
A
ZN
1400
H
ZN
ZN
1_555
metalc
2.386
A
CYS
346
A
SG
CYS
11
1_555
A
ZN
1400
H
ZN
ZN
1_555
metalc
2.287
A
CYS
359
A
SG
CYS
24
1_555
A
ZN
1401
I
ZN
ZN
1_555
metalc
2.383
A
CYS
363
A
SG
CYS
28
1_555
A
ZN
1401
I
ZN
ZN
1_555
metalc
2.098
A
HIS
368
A
ND1
HIS
33
1_555
A
ZN
1400
H
ZN
ZN
1_555
metalc
2.323
A
CYS
371
A
SG
CYS
36
1_555
A
ZN
1400
H
ZN
ZN
1_555
metalc
2.393
A
CYS
392
A
SG
CYS
57
1_555
A
ZN
1401
I
ZN
ZN
1_555
metalc
2.349
A
CYS
395
A
SG
CYS
60
1_555
A
ZN
1401
I
ZN
ZN
1_555
metalc
2.368
C
CYS
343
C
SG
CYS
8
1_555
C
ZN
1398
J
ZN
ZN
1_555
metalc
2.359
C
CYS
346
C
SG
CYS
11
1_555
C
ZN
1398
J
ZN
ZN
1_555
metalc
2.353
C
CYS
359
C
SG
CYS
24
1_555
C
ZN
1399
K
ZN
ZN
1_555
metalc
2.330
C
CYS
363
C
SG
CYS
28
1_555
C
ZN
1399
K
ZN
ZN
1_555
metalc
2.121
C
HIS
368
C
ND1
HIS
33
1_555
C
ZN
1398
J
ZN
ZN
1_555
metalc
2.291
C
CYS
371
C
SG
CYS
36
1_555
C
ZN
1398
J
ZN
ZN
1_555
metalc
2.414
C
CYS
392
C
SG
CYS
57
1_555
C
ZN
1399
K
ZN
ZN
1_555
metalc
2.371
C
CYS
395
C
SG
CYS
60
1_555
C
ZN
1399
K
ZN
ZN
1_555
GENE REGULATION
GENE REGULATION, WNT SIGNALING PATHWAY, WNT SIGNALING COMPLEX, CHROMOSOMAL REARRANGEMENT, SIGNALING PROTEIN, BCL9 HD1 DOMAIN, HPYGO1 PHD DOMAIN, PROTO-ONCOGENE, PHOSPHOPROTEIN, HISTONE H3K4ME2, ZINC, NUCLEUS, ZINC-FINGER, METAL-BINDING
2VPE
PDB
1
2VPE
PYGO1_HUMAN
UNP
1
Q9Y3Y4
2VPE
PDB
2
2VPE
BCL9_HUMAN
UNP
2
O00512
2VPE
PDB
3
2VPE
336
339
2VPE
336
339
2VPE
A
1
1
4
340
398
2VPE
340
398
Q9Y3Y4
A
2
5
63
174
176
2VPE
174
176
2VPE
B
3
1
3
177
205
2VPE
177
205
O00512
B
4
4
32
336
339
2VPE
336
339
2VPE
C
1
1
4
340
398
2VPE
340
398
Q9Y3Y4
C
2
5
63
174
176
2VPE
174
176
2VPE
D
3
1
3
177
205
2VPE
177
205
O00512
D
4
4
32
1
7
2VPE
1
7
2VPE
P
5
1
7
1
7
2VPE
1
7
2VPE
R
5
1
7
2
2
2
2
anti-parallel
parallel
anti-parallel
parallel
A
ALA
356
A
ALA
21
A
LEU
358
A
LEU
23
A
TRP
366
A
TRP
31
A
HIS
368
A
HIS
33
A
ALA
388
A
ALA
53
A
TRP
390
A
TRP
55
B
TYR
178
B
TYR
5
B
PHE
180
B
PHE
7
C
ALA
356
C
ALA
21
C
LEU
358
C
LEU
23
C
TRP
366
C
TRP
31
C
HIS
368
C
HIS
33
C
ALA
388
C
ALA
53
C
TRP
390
C
TRP
55
D
TYR
178
D
TYR
5
D
PHE
180
D
PHE
7
BINDING SITE FOR RESIDUE GOL A1399
Software
7
BINDING SITE FOR RESIDUE ZN C1398
Software
4
BINDING SITE FOR RESIDUE ZN C1399
Software
4
BINDING SITE FOR RESIDUE ZN A1400
Software
4
BINDING SITE FOR RESIDUE ZN A1401
Software
4
A
GLN
354
A
GLN
19
7
1_555
A
HIS
368
A
HIS
33
7
1_555
A
HOH
2076
L
HOH
7
1_555
A
HOH
2077
L
HOH
7
1_555
A
HOH
2078
L
HOH
7
1_555
C
GLY
336
C
GLY
1
7
1_555
C
ASN
348
C
ASN
13
7
1_555
C
CYS
343
C
CYS
8
4
1_555
C
CYS
346
C
CYS
11
4
1_555
C
HIS
368
C
HIS
33
4
1_555
C
CYS
371
C
CYS
36
4
1_555
C
CYS
359
C
CYS
24
4
1_555
C
CYS
363
C
CYS
28
4
1_555
C
CYS
392
C
CYS
57
4
1_555
C
CYS
395
C
CYS
60
4
1_555
A
CYS
343
A
CYS
8
4
1_555
A
CYS
346
A
CYS
11
4
1_555
A
HIS
368
A
HIS
33
4
1_555
A
CYS
371
A
CYS
36
4
1_555
A
CYS
359
A
CYS
24
4
1_555
A
CYS
363
A
CYS
28
4
1_555
A
CYS
392
A
CYS
57
4
1_555
A
CYS
395
A
CYS
60
4
1_555
90
P 4 21 2