0.012676 0.007318 0.000000 0.000000 0.014637 0.000000 0.000000 0.000000 0.005746 0.00000 0.00000 0.00000 Kuper, J. Wolski, S.C. Truglio, J.J. Kisker, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 78.890 78.890 174.040 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Ca 2 40.078 CALCIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking Fe4 S4 351.640 IRON/SULFUR CLUSTER non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Plos Biol. 1544-9173 6 E149 10.1371/JOURNAL.PBIO.0060149 18578568 Crystal Structure of the Fes Cluster-Containing Nucleotide Excision Repair Helicase Xpd. 2008 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD MARRESEARCH SINGLE WAVELENGTH M x-ray 1 1.00 1.0 BM14 ESRF 1.00 SYNCHROTRON ESRF BEAMLINE BM14 69260.117 DNA REPAIR HELICASE RAD3 RELATED PROTEIN 1 man polymer 351.640 IRON/SULFUR CLUSTER 1 syn non-polymer 40.078 CALCIUM ION 1 syn non-polymer 18.015 water 1 nat water XPD no no MQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLSSTMKIRAIPMQGRVNMCILYRMV DDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFYDYGERNNVCPYESMKAALPDADI VIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNRADREAQAYGDPELSQKIHVSDLI EMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYVENEKEKVGKVPFSYCSSVASRIIA FSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDPFDFYSDITGFEIPFKKIGEIFPPENRYIAYY DGVSSKYDTLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSFEHMKEYRGIDQKELYSMLKKFRRDHGTI FAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGAC VILDKRAGQFRKFIPDMKKTSDPASDIYNFFISAQAREKYGA MQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLSSTMKIRAIPMQGRVNMCILYRMV DDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFYDYGERNNVCPYESMKAALPDADI VIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNRADREAQAYGDPELSQKIHVSDLI EMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYVENEKEKVGKVPFSYCSSVASRIIA FSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDPFDFYSDITGFEIPFKKIGEIFPPENRYIAYY DGVSSKYDTLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSFEHMKEYRGIDQKELYSMLKKFRRDHGTI FAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGAC VILDKRAGQFRKFIPDMKKTSDPASDIYNFFISAQAREKYGA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 2303 THERMOPLASMA ACIDOPHILUM 469008 ESCHERICHIA COLI BL21(DE3) 2.17 43.4 NONE 0.2M MGCL2, 10-15% PEG 400, 0.1M SODIUM CITRATE PH5.6 repository Initial release Advisory Version format compliance 1 0 2008-07-08 1 1 2011-07-13 PDBE Y PDBE 2008-04-23 REL SF4 IRON/SULFUR CLUSTER CA CALCIUM ION HOH water SF4 1616 2 SF4 SF4 1616 A CA 1617 3 CA CA 1617 A HOH 2001 4 HOH HOH 2001 A n 1 19 A n 2 20 A n 3 21 A n 4 22 A TYR 23 n 5 TYR 23 A GLY 24 n 6 GLY 24 A VAL 25 n 7 VAL 25 A ALA 26 n 8 ALA 26 A LEU 27 n 9 LEU 27 A GLU 28 n 10 GLU 28 A SER 29 n 11 SER 29 A PRO 30 n 12 PRO 30 A THR 31 n 13 THR 31 A GLY 32 n 14 GLY 32 A SER 33 n 15 SER 33 A GLY 34 n 16 GLY 34 A LYS 35 n 17 LYS 35 A THR 36 n 18 THR 36 A ILE 37 n 19 ILE 37 A MET 38 n 20 MET 38 A ALA 39 n 21 ALA 39 A LEU 40 n 22 LEU 40 A LYS 41 n 23 LYS 41 A SER 42 n 24 SER 42 A ALA 43 n 25 ALA 43 A LEU 44 n 26 LEU 44 A GLN 45 n 27 GLN 45 A TYR 46 n 28 TYR 46 A SER 47 n 29 SER 47 A SER 48 n 30 SER 48 A GLU 49 n 31 GLU 49 A ARG 50 n 32 ARG 50 A LYS 51 n 33 LYS 51 A LEU 52 n 34 LEU 52 A LYS 53 n 35 LYS 53 A VAL 54 n 36 VAL 54 A LEU 55 n 37 LEU 55 A TYR 56 n 38 TYR 56 A LEU 57 n 39 LEU 57 A VAL 58 n 40 VAL 58 A ARG 59 n 41 ARG 59 A THR 60 n 42 THR 60 A ASN 61 n 43 ASN 61 A SER 62 n 44 SER 62 A GLN 63 n 45 GLN 63 A GLU 64 n 46 GLU 64 A GLU 65 n 47 GLU 65 A GLN 66 n 48 GLN 66 A VAL 67 n 49 VAL 67 A ILE 68 n 50 ILE 68 A LYS 69 n 51 LYS 69 A GLU 70 n 52 GLU 70 A LEU 71 n 53 LEU 71 A ARG 72 n 54 ARG 72 A SER 73 n 55 SER 73 A LEU 74 n 56 LEU 74 A SER 75 n 57 SER 75 A SER 76 n 58 SER 76 A THR 77 n 59 THR 77 A MET 78 n 60 MET 78 A LYS 79 n 61 LYS 79 A ILE 80 n 62 ILE 80 A ARG 81 n 63 ARG 81 A ALA 82 n 64 ALA 82 A ILE 83 n 65 ILE 83 A PRO 84 n 66 PRO 84 A MET 85 n 67 MET 85 A GLN 86 n 68 GLN 86 A GLY 87 n 69 GLY 87 A ARG 88 n 70 ARG 88 A VAL 89 n 71 VAL 89 A ASN 90 n 72 ASN 90 A MET 91 n 73 MET 91 A CYS 92 n 74 CYS 92 A ILE 93 n 75 ILE 93 A LEU 94 n 76 LEU 94 A TYR 95 n 77 TYR 95 A ARG 96 n 78 ARG 96 A MET 97 n 79 MET 97 A VAL 98 n 80 VAL 98 A ASP 99 n 81 ASP 99 A ASP 100 n 82 ASP 100 A LEU 101 n 83 LEU 101 A HIS 102 n 84 HIS 102 A GLU 103 n 85 GLU 103 A ILE 104 n 86 ILE 104 A ASN 105 n 87 ASN 105 A ALA 106 n 88 ALA 106 A GLU 107 n 89 GLU 107 A SER 108 n 90 SER 108 A LEU 109 n 91 LEU 109 A ALA 110 n 92 ALA 110 A LYS 111 n 93 LYS 111 A PHE 112 n 94 PHE 112 A CYS 113 n 95 CYS 113 A ASN 114 n 96 ASN 114 A MET 115 n 97 MET 115 A LYS 116 n 98 LYS 116 A LYS 117 n 99 LYS 117 A ARG 118 n 100 ARG 118 A GLU 119 n 101 GLU 119 A VAL 120 n 102 VAL 120 A MET 121 n 103 MET 121 A ALA 122 n 104 ALA 122 A GLY 123 n 105 GLY 123 A ASN 124 n 106 ASN 124 A GLU 125 n 107 GLU 125 A ALA 126 n 108 ALA 126 A ALA 127 n 109 ALA 127 A CYS 128 n 110 CYS 128 A PRO 129 n 111 PRO 129 A TYR 130 n 112 TYR 130 A PHE 131 n 113 PHE 131 A ASN 132 n 114 ASN 132 A PHE 133 n 115 PHE 133 A LYS 134 n 116 LYS 134 A ILE 135 n 117 ILE 135 A ARG 136 n 118 ARG 136 A SER 137 n 119 SER 137 A ASP 138 n 120 ASP 138 A GLU 139 n 121 GLU 139 A THR 140 n 122 THR 140 A LYS 141 n 123 LYS 141 A ARG 142 n 124 ARG 142 A PHE 143 n 125 PHE 143 A LEU 144 n 126 LEU 144 A PHE 145 n 127 PHE 145 A ASP 146 n 128 ASP 146 A GLU 147 n 129 GLU 147 A LEU 148 n 130 LEU 148 A PRO 149 n 131 PRO 149 A THR 150 n 132 THR 150 A ALA 151 n 133 ALA 151 A GLU 152 n 134 GLU 152 A GLU 153 n 135 GLU 153 A PHE 154 n 136 PHE 154 A TYR 155 n 137 TYR 155 A ASP 156 n 138 ASP 156 A TYR 157 n 139 TYR 157 A GLY 158 n 140 GLY 158 A GLU 159 n 141 GLU 159 A ARG 160 n 142 ARG 160 A ASN 161 n 143 ASN 161 A ASN 162 n 144 ASN 162 A VAL 163 n 145 VAL 163 A CYS 164 n 146 CYS 164 A PRO 165 n 147 PRO 165 A TYR 166 n 148 TYR 166 A GLU 167 n 149 GLU 167 A SER 168 n 150 SER 168 A MET 169 n 151 MET 169 A LYS 170 n 152 LYS 170 A ALA 171 n 153 ALA 171 A ALA 172 n 154 ALA 172 A LEU 173 n 155 LEU 173 A PRO 174 n 156 PRO 174 A ASP 175 n 157 ASP 175 A ALA 176 n 158 ALA 176 A ASP 177 n 159 ASP 177 A ILE 178 n 160 ILE 178 A VAL 179 n 161 VAL 179 A ILE 180 n 162 ILE 180 A ALA 181 n 163 ALA 181 A PRO 182 n 164 PRO 182 A TYR 183 n 165 TYR 183 A ALA 184 n 166 ALA 184 A TYR 185 n 167 TYR 185 A PHE 186 n 168 PHE 186 A LEU 187 n 169 LEU 187 A ASN 188 n 170 ASN 188 A ARG 189 n 171 ARG 189 A SER 190 n 172 SER 190 A VAL 191 n 173 VAL 191 A ALA 192 n 174 ALA 192 A GLU 193 n 175 GLU 193 A LYS 194 n 176 LYS 194 A PHE 195 n 177 PHE 195 A LEU 196 n 178 LEU 196 A SER 197 n 179 SER 197 A HIS 198 n 180 HIS 198 A TRP 199 n 181 TRP 199 A GLY 200 n 182 GLY 200 A VAL 201 n 183 VAL 201 A SER 202 n 184 SER 202 A ARG 203 n 185 ARG 203 A ASN 204 n 186 ASN 204 A GLN 205 n 187 GLN 205 A ILE 206 n 188 ILE 206 A VAL 207 n 189 VAL 207 A ILE 208 n 190 ILE 208 A ILE 209 n 191 ILE 209 A LEU 210 n 192 LEU 210 A ASP 211 n 193 ASP 211 A GLU 212 n 194 GLU 212 A ALA 213 n 195 ALA 213 A HIS 214 n 196 HIS 214 A ASN 215 n 197 ASN 215 A LEU 216 n 198 LEU 216 A PRO 217 n 199 PRO 217 A ASP 218 n 200 ASP 218 A ILE 219 n 201 ILE 219 A GLY 220 n 202 GLY 220 A ARG 221 n 203 ARG 221 A SER 222 n 204 SER 222 A ILE 223 n 205 ILE 223 A GLY 224 n 206 GLY 224 A SER 225 n 207 SER 225 A PHE 226 n 208 PHE 226 A ARG 227 n 209 ARG 227 A ILE 228 n 210 ILE 228 A SER 229 n 211 SER 229 A VAL 230 n 212 VAL 230 A GLU 231 n 213 GLU 231 A SER 232 n 214 SER 232 A LEU 233 n 215 LEU 233 A ASN 234 n 216 ASN 234 A ARG 235 n 217 ARG 235 A ALA 236 n 218 ALA 236 A ASP 237 n 219 ASP 237 A ARG 238 n 220 ARG 238 A GLU 239 n 221 GLU 239 A ALA 240 n 222 ALA 240 A GLN 241 n 223 GLN 241 A ALA 242 n 224 ALA 242 A TYR 243 n 225 TYR 243 A GLY 244 n 226 GLY 244 A ASP 245 n 227 ASP 245 A PRO 246 n 228 PRO 246 A GLU 247 n 229 GLU 247 A LEU 248 n 230 LEU 248 A SER 249 n 231 SER 249 A GLN 250 n 232 GLN 250 A LYS 251 n 233 LYS 251 A ILE 252 n 234 ILE 252 A HIS 253 n 235 HIS 253 A VAL 254 n 236 VAL 254 A SER 255 n 237 SER 255 A ASP 256 n 238 ASP 256 A LEU 257 n 239 LEU 257 A ILE 258 n 240 ILE 258 A GLU 259 n 241 GLU 259 A MET 260 n 242 MET 260 A ILE 261 n 243 ILE 261 A ARG 262 n 244 ARG 262 A SER 263 n 245 SER 263 A ALA 264 n 246 ALA 264 A LEU 265 n 247 LEU 265 A GLN 266 n 248 GLN 266 A SER 267 n 249 SER 267 A MET 268 n 250 MET 268 A VAL 269 n 251 VAL 269 A SER 270 n 252 SER 270 A GLU 271 n 253 GLU 271 A ARG 272 n 254 ARG 272 A CYS 273 n 255 CYS 273 A GLY 274 n 256 GLY 274 A LYS 275 n 257 LYS 275 A GLY 276 n 258 GLY 276 A ASP 277 n 259 ASP 277 A VAL 278 n 260 VAL 278 A ARG 279 n 261 ARG 279 A ILE 280 n 262 ILE 280 A ARG 281 n 263 ARG 281 A PHE 282 n 264 PHE 282 A GLN 283 n 265 GLN 283 A GLU 284 n 266 GLU 284 A PHE 285 n 267 PHE 285 A MET 286 n 268 MET 286 A GLU 287 n 269 GLU 287 A TYR 288 n 270 TYR 288 A MET 289 n 271 MET 289 A ARG 290 n 272 ARG 290 A ILE 291 n 273 ILE 291 A MET 292 n 274 MET 292 A ASN 293 n 275 ASN 293 A LYS 294 n 276 LYS 294 A ARG 295 n 277 ARG 295 A SER 296 n 278 SER 296 A GLU 297 n 279 GLU 297 A ARG 298 n 280 ARG 298 A GLU 299 n 281 GLU 299 A ILE 300 n 282 ILE 300 A ARG 301 n 283 ARG 301 A SER 302 n 284 SER 302 A LEU 303 n 285 LEU 303 A LEU 304 n 286 LEU 304 A ASN 305 n 287 ASN 305 A TYR 306 n 288 TYR 306 A LEU 307 n 289 LEU 307 A TYR 308 n 290 TYR 308 A LEU 309 n 291 LEU 309 A PHE 310 n 292 PHE 310 A GLY 311 n 293 GLY 311 A GLU 312 n 294 GLU 312 A TYR 313 n 295 TYR 313 A VAL 314 n 296 VAL 314 A GLU 315 n 297 GLU 315 A ASN 316 n 298 ASN 316 A GLU 317 n 299 GLU 317 A LYS 318 n 300 LYS 318 A GLU 319 n 301 GLU 319 A LYS 320 n 302 LYS 320 A VAL 321 n 303 VAL 321 A GLY 322 n 304 GLY 322 A LYS 323 n 305 LYS 323 A VAL 324 n 306 VAL 324 A PRO 325 n 307 PRO 325 A PHE 326 n 308 PHE 326 A SER 327 n 309 SER 327 A TYR 328 n 310 TYR 328 A CYS 329 n 311 CYS 329 A SER 330 n 312 SER 330 A SER 331 n 313 SER 331 A VAL 332 n 314 VAL 332 A ALA 333 n 315 ALA 333 A SER 334 n 316 SER 334 A ARG 335 n 317 ARG 335 A ILE 336 n 318 ILE 336 A ILE 337 n 319 ILE 337 A ALA 338 n 320 ALA 338 A PHE 339 n 321 PHE 339 A SER 340 n 322 SER 340 A ASP 341 n 323 ASP 341 A GLN 342 n 324 GLN 342 A ASP 343 n 325 ASP 343 A GLU 344 n 326 GLU 344 A GLU 345 n 327 GLU 345 A LYS 346 n 328 LYS 346 A TYR 347 n 329 TYR 347 A ALA 348 n 330 ALA 348 A ALA 349 n 331 ALA 349 A ILE 350 n 332 ILE 350 A LEU 351 n 333 LEU 351 A SER 352 n 334 SER 352 A PRO 353 n 335 PRO 353 A GLU 354 n 336 GLU 354 A ASP 355 n 337 ASP 355 A GLY 356 n 338 GLY 356 A GLY 357 n 339 GLY 357 A TYR 358 n 340 TYR 358 A MET 359 n 341 MET 359 A GLN 360 n 342 GLN 360 A ALA 361 n 343 ALA 361 A ALA 362 n 344 ALA 362 A CYS 363 n 345 CYS 363 A LEU 364 n 346 LEU 364 A ASP 365 n 347 ASP 365 A PRO 366 n 348 PRO 366 A SER 367 n 349 SER 367 A GLY 368 n 350 GLY 368 A ILE 369 n 351 ILE 369 A LEU 370 n 352 LEU 370 A GLU 371 n 353 GLU 371 A VAL 372 n 354 VAL 372 A LEU 373 n 355 LEU 373 A LYS 374 n 356 LYS 374 A GLU 375 n 357 GLU 375 A SER 376 n 358 SER 376 A LYS 377 n 359 LYS 377 A THR 378 n 360 THR 378 A ILE 379 n 361 ILE 379 A HIS 380 n 362 HIS 380 A MET 381 n 363 MET 381 A SER 382 n 364 SER 382 A GLY 383 n 365 GLY 383 A THR 384 n 366 THR 384 A LEU 385 n 367 LEU 385 A ASP 386 n 368 ASP 386 A PRO 387 n 369 PRO 387 A PHE 388 n 370 PHE 388 A ASP 389 n 371 ASP 389 A PHE 390 n 372 PHE 390 A TYR 391 n 373 TYR 391 A SER 392 n 374 SER 392 A ASP 393 n 375 ASP 393 A ILE 394 n 376 ILE 394 A THR 395 n 377 THR 395 A GLY 396 n 378 GLY 396 A PHE 397 n 379 PHE 397 A GLU 398 n 380 GLU 398 A ILE 399 n 381 ILE 399 A PRO 400 n 382 PRO 400 A PHE 401 n 383 PHE 401 A LYS 402 n 384 LYS 402 A LYS 403 n 385 LYS 403 A ILE 404 n 386 ILE 404 A GLY 405 n 387 GLY 405 A GLU 406 n 388 GLU 406 A ILE 407 n 389 ILE 407 A PHE 408 n 390 PHE 408 A PRO 409 n 391 PRO 409 A PRO 410 n 392 PRO 410 A GLU 411 n 393 GLU 411 A ASN 412 n 394 ASN 412 A ARG 413 n 395 ARG 413 A TYR 414 n 396 TYR 414 A ILE 415 n 397 ILE 415 A ALA 416 n 398 ALA 416 A TYR 417 n 399 TYR 417 A TYR 418 n 400 TYR 418 A ASP 419 n 401 ASP 419 A GLY 420 n 402 GLY 420 A VAL 421 n 403 VAL 421 A SER 422 n 404 SER 422 A SER 423 n 405 SER 423 A LYS 424 n 406 LYS 424 A TYR 425 n 407 TYR 425 A ASP 426 n 408 ASP 426 A THR 427 n 409 THR 427 A LEU 428 n 410 LEU 428 A ASP 429 n 411 ASP 429 A GLU 430 n 412 GLU 430 A LYS 431 n 413 LYS 431 A GLU 432 n 414 GLU 432 A LEU 433 n 415 LEU 433 A ASP 434 n 416 ASP 434 A ARG 435 n 417 ARG 435 A MET 436 n 418 MET 436 A ALA 437 n 419 ALA 437 A THR 438 n 420 THR 438 A VAL 439 n 421 VAL 439 A ILE 440 n 422 ILE 440 A GLU 441 n 423 GLU 441 A ASP 442 n 424 ASP 442 A ILE 443 n 425 ILE 443 A ILE 444 n 426 ILE 444 A LEU 445 n 427 LEU 445 A LYS 446 n 428 LYS 446 A VAL 447 n 429 VAL 447 A LYS 448 n 430 LYS 448 A LYS 449 n 431 LYS 449 A ASN 450 n 432 ASN 450 A THR 451 n 433 THR 451 A ILE 452 n 434 ILE 452 A VAL 453 n 435 VAL 453 A TYR 454 n 436 TYR 454 A PHE 455 n 437 PHE 455 A PRO 456 n 438 PRO 456 A SER 457 n 439 SER 457 A TYR 458 n 440 TYR 458 A SER 459 n 441 SER 459 A LEU 460 n 442 LEU 460 A MET 461 n 443 MET 461 A ASP 462 n 444 ASP 462 A ARG 463 n 445 ARG 463 A VAL 464 n 446 VAL 464 A GLU 465 n 447 GLU 465 A ASN 466 n 448 ASN 466 A ARG 467 n 449 ARG 467 A VAL 468 n 450 VAL 468 A SER 469 n 451 SER 469 A PHE 470 n 452 PHE 470 A GLU 471 n 453 GLU 471 A HIS 472 n 454 HIS 472 A MET 473 n 455 MET 473 A LYS 474 n 456 LYS 474 A GLU 475 n 457 GLU 475 A TYR 476 n 458 TYR 476 A ARG 477 n 459 ARG 477 A GLY 478 n 460 GLY 478 A ILE 479 n 461 ILE 479 A ASP 480 n 462 ASP 480 A GLN 481 n 463 GLN 481 A LYS 482 n 464 LYS 482 A GLU 483 n 465 GLU 483 A LEU 484 n 466 LEU 484 A TYR 485 n 467 TYR 485 A SER 486 n 468 SER 486 A MET 487 n 469 MET 487 A LEU 488 n 470 LEU 488 A LYS 489 n 471 LYS 489 A LYS 490 n 472 LYS 490 A PHE 491 n 473 PHE 491 A ARG 492 n 474 ARG 492 A ARG 493 n 475 ARG 493 A ASP 494 n 476 ASP 494 A HIS 495 n 477 HIS 495 A GLY 496 n 478 GLY 496 A THR 497 n 479 THR 497 A ILE 498 n 480 ILE 498 A PHE 499 n 481 PHE 499 A ALA 500 n 482 ALA 500 A VAL 501 n 483 VAL 501 A SER 502 n 484 SER 502 A GLY 503 n 485 GLY 503 A GLY 504 n 486 GLY 504 A ARG 505 n 487 ARG 505 A LEU 506 n 488 LEU 506 A SER 507 n 489 SER 507 A GLU 508 n 490 GLU 508 A GLY 509 n 491 GLY 509 A n 492 510 A n 493 511 A n 494 512 A n 495 513 A n 496 514 A ASN 515 n 497 ASN 515 A GLU 516 n 498 GLU 516 A LEU 517 n 499 LEU 517 A GLU 518 n 500 GLU 518 A MET 519 n 501 MET 519 A ILE 520 n 502 ILE 520 A ILE 521 n 503 ILE 521 A LEU 522 n 504 LEU 522 A ALA 523 n 505 ALA 523 A GLY 524 n 506 GLY 524 A LEU 525 n 507 LEU 525 A PRO 526 n 508 PRO 526 A PHE 527 n 509 PHE 527 A PRO 528 n 510 PRO 528 A ARG 529 n 511 ARG 529 A PRO 530 n 512 PRO 530 A ASP 531 n 513 ASP 531 A ALA 532 n 514 ALA 532 A ILE 533 n 515 ILE 533 A ASN 534 n 516 ASN 534 A ARG 535 n 517 ARG 535 A SER 536 n 518 SER 536 A LEU 537 n 519 LEU 537 A PHE 538 n 520 PHE 538 A ASP 539 n 521 ASP 539 A TYR 540 n 522 TYR 540 A TYR 541 n 523 TYR 541 A GLU 542 n 524 GLU 542 A ARG 543 n 525 ARG 543 A LYS 544 n 526 LYS 544 A TYR 545 n 527 TYR 545 A GLY 546 n 528 GLY 546 A LYS 547 n 529 LYS 547 A GLY 548 n 530 GLY 548 A TRP 549 n 531 TRP 549 A GLU 550 n 532 GLU 550 A TYR 551 n 533 TYR 551 A SER 552 n 534 SER 552 A VAL 553 n 535 VAL 553 A VAL 554 n 536 VAL 554 A TYR 555 n 537 TYR 555 A PRO 556 n 538 PRO 556 A THR 557 n 539 THR 557 A ALA 558 n 540 ALA 558 A ILE 559 n 541 ILE 559 A LYS 560 n 542 LYS 560 A ILE 561 n 543 ILE 561 A ARG 562 n 544 ARG 562 A GLN 563 n 545 GLN 563 A GLU 564 n 546 GLU 564 A ILE 565 n 547 ILE 565 A GLY 566 n 548 GLY 566 A ARG 567 n 549 ARG 567 A LEU 568 n 550 LEU 568 A ILE 569 n 551 ILE 569 A ARG 570 n 552 ARG 570 A SER 571 n 553 SER 571 A ALA 572 n 554 ALA 572 A GLU 573 n 555 GLU 573 A ASP 574 n 556 ASP 574 A THR 575 n 557 THR 575 A GLY 576 n 558 GLY 576 A ALA 577 n 559 ALA 577 A CYS 578 n 560 CYS 578 A VAL 579 n 561 VAL 579 A ILE 580 n 562 ILE 580 A LEU 581 n 563 LEU 581 A ASP 582 n 564 ASP 582 A LYS 583 n 565 LYS 583 A ARG 584 n 566 ARG 584 A ALA 585 n 567 ALA 585 A GLY 586 n 568 GLY 586 A GLN 587 n 569 GLN 587 A PHE 588 n 570 PHE 588 A ARG 589 n 571 ARG 589 A LYS 590 n 572 LYS 590 A PHE 591 n 573 PHE 591 A ILE 592 n 574 ILE 592 A PRO 593 n 575 PRO 593 A ASP 594 n 576 ASP 594 A MET 595 n 577 MET 595 A LYS 596 n 578 LYS 596 A LYS 597 n 579 LYS 597 A THR 598 n 580 THR 598 A SER 599 n 581 SER 599 A ASP 600 n 582 ASP 600 A PRO 601 n 583 PRO 601 A ALA 602 n 584 ALA 602 A SER 603 n 585 SER 603 A ASP 604 n 586 ASP 604 A ILE 605 n 587 ILE 605 A TYR 606 n 588 TYR 606 A ASN 607 n 589 ASN 607 A PHE 608 n 590 PHE 608 A PHE 609 n 591 PHE 609 A ILE 610 n 592 ILE 610 A SER 611 n 593 SER 611 A ALA 612 n 594 ALA 612 A GLN 613 n 595 GLN 613 A ALA 614 n 596 ALA 614 A ARG 615 n 597 ARG 615 A n 598 616 A n 599 617 A n 600 618 A n 601 619 A n 602 620 A 4.0650 -0.0917 -0.2999 10.1864 -3.6955 4.7998 -0.0366 0.6067 0.0755 -1.5207 0.4352 1.6355 0.6680 -0.6454 -0.3985 -0.0085 -0.2876 -0.2840 0.0261 0.0985 0.1749 refined -44.7358 34.1328 12.3891 X-RAY DIFFRACTION 2.3095 1.7334 -1.1087 7.3572 -1.9183 8.0934 0.1921 0.0441 0.3662 -0.2068 0.2556 0.7117 -0.1386 -0.2338 -0.4477 -0.2112 0.0160 0.0614 -0.2052 0.0859 -0.0837 refined -35.6184 57.1209 13.1739 X-RAY DIFFRACTION 2.6264 -1.5218 0.9895 8.7906 1.2986 2.2422 -0.0650 -0.3632 -0.0643 0.3674 0.2718 -0.2469 0.2387 0.1581 -0.2068 -0.3212 -0.0886 0.0778 0.0944 -0.0536 -0.2142 refined -26.3235 42.0060 42.0677 X-RAY DIFFRACTION 5.4153 -0.5369 -3.2251 0.9735 2.7011 8.0828 -0.1235 0.3299 0.1845 -0.0808 0.2391 -0.2384 -0.5418 0.5905 -0.1156 0.3091 -0.1450 -0.0594 -0.0002 0.0042 0.1553 refined -22.1039 17.9094 9.1766 X-RAY DIFFRACTION A 23 A 79 X-RAY DIFFRACTION 1 A 176 A 224 X-RAY DIFFRACTION 1 A 363 A 405 X-RAY DIFFRACTION 1 A 80 A 175 X-RAY DIFFRACTION 2 A 1616 A 1616 X-RAY DIFFRACTION 2 A 225 A 362 X-RAY DIFFRACTION 3 A 406 A 615 X-RAY DIFFRACTION 4 software_defined_assembly PQS 1 monomeric A CYS 92 A SG CYS 74 1_555 A SF4 1616 B FE1 SF4 1_555 A SF4 1616 B S2 SF4 1_555 99.2 A CYS 92 A SG CYS 74 1_555 A SF4 1616 B FE1 SF4 1_555 A SF4 1616 B S3 SF4 1_555 115.9 A SF4 1616 B S2 SF4 1_555 A SF4 1616 B FE1 SF4 1_555 A SF4 1616 B S3 SF4 1_555 104.0 A CYS 92 A SG CYS 74 1_555 A SF4 1616 B FE1 SF4 1_555 A SF4 1616 B S4 SF4 1_555 123.3 A SF4 1616 B S2 SF4 1_555 A SF4 1616 B FE1 SF4 1_555 A SF4 1616 B S4 SF4 1_555 105.6 A SF4 1616 B S3 SF4 1_555 A SF4 1616 B FE1 SF4 1_555 A SF4 1616 B S4 SF4 1_555 106.2 A CYS 164 A SG CYS 146 1_555 A SF4 1616 B FE4 SF4 1_555 A SF4 1616 B S1 SF4 1_555 104.2 A CYS 164 A SG CYS 146 1_555 A SF4 1616 B FE4 SF4 1_555 A SF4 1616 B S2 SF4 1_555 107.8 A SF4 1616 B S1 SF4 1_555 A SF4 1616 B FE4 SF4 1_555 A SF4 1616 B S2 SF4 1_555 106.7 A CYS 164 A SG CYS 146 1_555 A SF4 1616 B FE4 SF4 1_555 A SF4 1616 B S3 SF4 1_555 126.6 A SF4 1616 B S1 SF4 1_555 A SF4 1616 B FE4 SF4 1_555 A SF4 1616 B S3 SF4 1_555 106.8 A SF4 1616 B S2 SF4 1_555 A SF4 1616 B FE4 SF4 1_555 A SF4 1616 B S3 SF4 1_555 103.5 A CYS 113 A SG CYS 95 1_555 A SF4 1616 B FE3 SF4 1_555 A SF4 1616 B S1 SF4 1_555 126.9 A CYS 113 A SG CYS 95 1_555 A SF4 1616 B FE3 SF4 1_555 A SF4 1616 B S2 SF4 1_555 109.3 A SF4 1616 B S1 SF4 1_555 A SF4 1616 B FE3 SF4 1_555 A SF4 1616 B S2 SF4 1_555 106.5 A CYS 113 A SG CYS 95 1_555 A SF4 1616 B FE3 SF4 1_555 A SF4 1616 B S4 SF4 1_555 100.9 A SF4 1616 B S1 SF4 1_555 A SF4 1616 B FE3 SF4 1_555 A SF4 1616 B S4 SF4 1_555 105.7 A SF4 1616 B S2 SF4 1_555 A SF4 1616 B FE3 SF4 1_555 A SF4 1616 B S4 SF4 1_555 105.6 A CYS 128 A SG CYS 110 1_555 A SF4 1616 B FE2 SF4 1_555 A SF4 1616 B S1 SF4 1_555 107.4 A CYS 128 A SG CYS 110 1_555 A SF4 1616 B FE2 SF4 1_555 A SF4 1616 B S3 SF4 1_555 110.3 A SF4 1616 B S1 SF4 1_555 A SF4 1616 B FE2 SF4 1_555 A SF4 1616 B S3 SF4 1_555 106.2 A CYS 128 A SG CYS 110 1_555 A SF4 1616 B FE2 SF4 1_555 A SF4 1616 B S4 SF4 1_555 120.7 A SF4 1616 B S1 SF4 1_555 A SF4 1616 B FE2 SF4 1_555 A SF4 1616 B S4 SF4 1_555 105.8 A SF4 1616 B S3 SF4 1_555 A SF4 1616 B FE2 SF4 1_555 A SF4 1616 B S4 SF4 1_555 105.5 A GLU 315 A OE2 GLU 297 1_555 A CA 1617 C CA CA 1_555 A GLU 312 A OE1 GLU 294 1_555 59.9 A GLU 315 A OE2 GLU 297 1_555 A CA 1617 C CA CA 1_555 A GLU 312 A OE2 GLU 294 1_555 101.4 A GLU 312 A OE1 GLU 294 1_555 A CA 1617 C CA CA 1_555 A GLU 312 A OE2 GLU 294 1_555 44.5 A GLU 315 A OE2 GLU 297 1_555 A CA 1617 C CA CA 1_555 A ASN 162 A ND2 ASN 144 5_455 87.4 A GLU 312 A OE1 GLU 294 1_555 A CA 1617 C CA CA 1_555 A ASN 162 A ND2 ASN 144 5_455 83.7 A GLU 312 A OE2 GLU 294 1_555 A CA 1617 C CA CA 1_555 A ASN 162 A ND2 ASN 144 5_455 68.7 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 83 A N ILE 65 A O ILE 178 A O ILE 160 A N VAL 179 A N VAL 161 A O VAL 54 A O VAL 36 A N LEU 55 A N LEU 37 A O VAL 207 A O VAL 189 A N ILE 208 A N ILE 190 A O LYS 377 A O LYS 359 A N HIS 380 A N HIS 362 A O VAL 25 A O VAL 7 A O ALA 26 A O ALA 8 A N LYS 402 A N LYS 384 A N ILE 228 A N ILE 210 A O MET 359 A O MET 341 A N ALA 362 A N ALA 344 A O ALA 348 A O ALA 330 A N LEU 351 A N LEU 333 A O VAL 278 A O VAL 260 A N ILE 498 A N ILE 480 A O THR 451 A O THR 433 A N ILE 452 A N ILE 434 A O MET 519 A O MET 501 A N ILE 520 A N ILE 502 A O ALA 577 A O ALA 559 A N CYS 578 A N CYS 560 A O TYR 414 A O TYR 396 A N TYR 417 A N TYR 399 A O LYS 596 A O LYS 578 1 A MET 19 A MET 1 1 Y 1 A GLN 20 A GLN 2 1 Y 1 A LYS 21 A LYS 3 1 Y 1 A SER 22 A SER 4 1 Y 1 A ILE 510 A ILE 492 1 Y 1 A ASN 511 A ASN 493 1 Y 1 A PHE 512 A PHE 494 1 Y 1 A PRO 513 A PRO 495 1 Y 1 A GLY 514 A GLY 496 1 Y 1 A GLU 616 A GLU 598 1 Y 1 A LYS 617 A LYS 599 1 Y 1 A TYR 618 A TYR 600 1 Y 1 A GLY 619 A GLY 601 1 Y 1 A ALA 620 A ALA 602 1 Y 1 A SER 33 39.32 77.28 1 A ALA 43 -142.17 22.41 1 A TYR 46 61.78 -86.04 1 A SER 47 41.46 -77.60 1 A LYS 51 64.85 -15.72 1 A ARG 59 -81.75 -72.56 1 A GLU 212 38.91 50.88 1 A ASP 341 -68.79 -102.04 1 A GLN 342 -75.57 -166.68 1 A ASP 343 100.99 -4.57 1 A SER 382 -153.68 -67.96 1 A THR 384 -155.10 84.92 1 A LEU 385 -156.41 47.17 1 A ASP 386 -33.34 -80.03 1 A LYS 403 -102.18 53.53 1 A ASP 429 68.71 97.31 1 A ASN 450 -56.73 89.12 1 A SER 469 -142.10 49.86 1 A HIS 472 -123.80 -168.84 1 A GLU 475 -152.95 66.71 1 A ARG 477 -47.35 155.61 1 A ILE 479 66.82 -76.37 1 A ASP 480 34.47 125.27 1 A HIS 495 58.08 -132.19 1 A GLU 508 -94.85 47.69 1 A GLU 518 -164.33 -45.45 1 A PRO 530 -55.37 41.14 1 A LYS 547 -149.02 57.20 1 A VAL 553 -122.40 -58.21 1 A ARG 562 -36.25 -36.34 1 A ALA 614 -29.61 -51.59 54.04 -0.15000 -0.08000 0.00000 -0.15000 0.00000 0.23000 0.948 0.895 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 0.287 0.206 0.209 2.90 20.00 657 12870 4.900 100.0 49.724 0.427 RANDOM LIKELY RESIDUAL 1 THROUGHOUT MAD 0.515 0.80 0.80 1.40 NONE MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 2.90 20.00 1 4761 9 0 4751 0.007 0.022 4857 0.001 0.020 3452 0.925 1.976 6540 0.780 3.000 8354 6.004 5.000 586 32.813 23.432 236 17.612 15.000 899 13.261 15.000 42 0.055 0.200 699 0.002 0.020 5356 0.001 0.020 1032 0.201 0.200 1229 0.168 0.200 3652 0.182 0.200 2381 0.081 0.200 2692 0.117 0.200 115 0.135 0.200 21 0.137 0.200 49 0.118 0.200 6 0.791 2.000 3061 1.470 4.000 4727 1.903 5.000 2086 2.979 8.000 1801 0.3190 0.3190 2.97 64 895 20 2.90 63.63 2VSF 13622 0.0 0.07 1 8.89 3.98 100.0 0.62 2.90 3.06 1.24 1 3.56 100.0 refinement REFMAC 5.2.0019 data reduction MOSFLM data scaling SCALA phasing SHARP DNA REPAIR HELICASE RAD3 RELATED PROTEIN Structure of XPD from Thermoplasma acidophilum 1 N N 2 N N 3 N N 4 N N A THR 36 A THR 18 HELX_P A SER 42 A SER 24 1 1 7 A THR 60 A THR 42 HELX_P A SER 76 A SER 58 1 2 17 A GLY 87 A GLY 69 HELX_P A CYS 92 A CYS 74 1 3 6 A LEU 94 A LEU 76 HELX_P A ASP 99 A ASP 81 1 4 6 A ASN 105 A ASN 87 HELX_P A GLY 123 A GLY 105 1 5 19 A ASN 124 A ASN 106 HELX_P A CYS 128 A CYS 110 5 6 5 A ASN 132 A ASN 114 HELX_P A ARG 136 A ARG 118 5 7 5 A SER 137 A SER 119 HELX_P A GLU 147 A GLU 129 1 8 11 A THR 150 A THR 132 HELX_P A ASN 162 A ASN 144 1 9 13 A CYS 164 A CYS 146 HELX_P A LEU 173 A LEU 155 1 10 10 A PRO 174 A PRO 156 HELX_P A ALA 176 A ALA 158 5 11 3 A TYR 183 A TYR 165 HELX_P A LEU 187 A LEU 169 1 12 5 A ASN 188 A ASN 170 HELX_P A GLY 200 A GLY 182 1 13 13 A GLU 212 A GLU 194 HELX_P A HIS 214 A HIS 196 5 14 3 A ASN 215 A ASN 197 HELX_P A SER 225 A SER 207 1 15 11 A VAL 230 A VAL 212 HELX_P A TYR 243 A TYR 225 1 16 14 A HIS 253 A HIS 235 HELX_P A CYS 273 A CYS 255 1 17 21 A ARG 281 A ARG 263 HELX_P A LYS 294 A LYS 276 1 18 14 A SER 296 A SER 278 HELX_P A GLY 322 A GLY 304 1 19 27 A SER 327 A SER 309 HELX_P A ASP 341 A ASP 323 1 20 15 A PRO 366 A PRO 348 HELX_P A GLU 371 A GLU 353 1 21 6 A VAL 372 A VAL 354 HELX_P A SER 376 A SER 358 5 22 5 A PRO 387 A PRO 369 HELX_P A GLY 396 A GLY 378 1 23 10 A PRO 409 A PRO 391 HELX_P A GLU 411 A GLU 393 5 24 3 A ASP 429 A ASP 411 HELX_P A LYS 448 A LYS 430 1 25 20 A SER 457 A SER 439 HELX_P A VAL 468 A VAL 450 1 26 12 A ASP 480 A ASP 462 HELX_P A ASP 494 A ASP 476 1 27 15 A GLY 504 A GLY 486 HELX_P A GLU 508 A GLU 490 5 28 5 A ASP 531 A ASP 513 HELX_P A LYS 544 A LYS 526 1 29 14 A LYS 547 A LYS 529 HELX_P A VAL 553 A VAL 535 1 30 7 A VAL 553 A VAL 535 HELX_P A ILE 569 A ILE 551 1 31 17 A ALA 585 A ALA 567 HELX_P A LYS 590 A LYS 572 5 32 6 A ASP 600 A ASP 582 HELX_P A ARG 615 A ARG 597 1 33 16 metalc 2.364 A SF4 1616 B FE1 SF4 1_555 A CYS 92 A SG CYS 74 1_555 metalc 2.250 A SF4 1616 B FE4 SF4 1_555 A CYS 164 A SG CYS 146 1_555 metalc 2.341 A SF4 1616 B FE3 SF4 1_555 A CYS 113 A SG CYS 95 1_555 metalc 2.481 A SF4 1616 B FE2 SF4 1_555 A CYS 128 A SG CYS 110 1_555 metalc 2.600 A CA 1617 C CA CA 1_555 A GLU 315 A OE2 GLU 297 1_555 metalc 2.432 A CA 1617 C CA CA 1_555 A GLU 312 A OE1 GLU 294 1_555 metalc 3.123 A CA 1617 C CA CA 1_555 A GLU 312 A OE2 GLU 294 1_555 metalc 2.233 A CA 1617 C CA CA 1_555 A ASN 162 A ND2 ASN 144 5_455 HYDROLASE NER, TFIIH, HELICASE, HYDROLASE, ATP-BINDING, NUCLEOTIDE-BINDING, IRON SULFUR CLUSTER Q9HM14_THEAC UNP 1 Q9HM14 1 602 2VSF 19 620 Q9HM14 A 1 1 602 7 4 6 parallel parallel parallel parallel parallel parallel anti-parallel anti-parallel anti-parallel parallel parallel parallel parallel parallel A ALA 82 A ALA 64 A PRO 84 A PRO 66 A ILE 178 A ILE 160 A PRO 182 A PRO 164 A LYS 53 A LYS 35 A VAL 58 A VAL 40 A ILE 206 A ILE 188 A LEU 210 A LEU 192 A LYS 377 A LYS 359 A MET 381 A MET 363 A GLY 24 A GLY 6 A LEU 27 A LEU 9 A PHE 401 A PHE 383 A LYS 402 A LYS 384 A PHE 226 A PHE 208 A SER 229 A SER 211 A TYR 358 A TYR 340 A CYS 363 A CYS 345 A TYR 347 A TYR 329 A SER 352 A SER 334 A VAL 278 A VAL 260 A ILE 280 A ILE 262 A ILE 498 A ILE 480 A VAL 501 A VAL 483 A THR 451 A THR 433 A PHE 455 A PHE 437 A MET 519 A MET 501 A LEU 522 A LEU 504 A GLY 576 A GLY 558 A LEU 581 A LEU 563 A ARG 413 A ARG 395 A TYR 418 A TYR 400 A LYS 596 A LYS 578 A THR 598 A THR 580 BINDING SITE FOR RESIDUE SF4 A1616 Software 7 BINDING SITE FOR RESIDUE CA A1617 Software 6 A ARG 88 A ARG 70 7 1_555 A CYS 92 A CYS 74 7 1_555 A ILE 93 A ILE 75 7 1_555 A LEU 94 A LEU 76 7 1_555 A CYS 113 A CYS 95 7 1_555 A CYS 128 A CYS 110 7 1_555 A CYS 164 A CYS 146 7 1_555 A GLU 107 A GLU 89 6 1_555 A LYS 111 A LYS 93 6 1_555 A GLU 159 A GLU 141 6 1_555 A ASN 162 A ASN 144 6 1_555 A GLU 312 A GLU 294 6 1_555 A GLU 315 A GLU 297 6 1_555 170 P 65