0.010730
0.000000
0.002424
0.000000
0.016295
0.000000
0.000000
0.000000
0.008648
0.00000
0.00000
0.00000
Itoh, T.
Fairall, L.
Schwabe, J.W.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
102.73
90.00
93.197
61.370
118.552
C18 H32 O3
296.445
(9Z,11E,13S)-13-hydroxyoctadeca-9,11-dienoic acid
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
C
N
3
N
O
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
C
N
8
N
C
N
9
N
C
N
10
N
C
N
11
N
C
N
12
N
C
N
13
N
C
N
14
N
C
N
15
S
C
N
16
N
O
N
17
N
C
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
C
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
N
N
55
S
C
N
56
N
C
N
57
N
O
N
58
N
C
N
59
N
O
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
N
N
68
S
C
N
69
N
C
N
70
N
O
N
71
N
C
N
72
N
C
N
73
N
C
N
74
N
N
N
75
N
C
N
76
N
N
N
77
N
N
N
78
N
O
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
O
N
101
N
N
N
102
N
O
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
N
N
112
S
C
N
113
N
C
N
114
N
O
N
115
N
C
N
116
N
C
N
117
N
O
N
118
N
O
N
119
N
O
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
R
C
N
129
N
C
N
130
N
O
N
131
N
C
N
132
N
S
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
N
N
142
S
C
N
143
N
C
N
144
N
O
N
145
N
C
N
146
N
C
N
147
N
C
N
148
N
O
N
149
N
N
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
N
C
N
166
N
C
N
167
N
C
N
168
N
O
N
169
N
O
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
N
C
N
182
N
C
N
183
N
O
N
184
N
O
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
N
N
191
S
C
N
192
N
C
N
193
N
O
N
194
N
C
Y
195
N
C
Y
196
N
N
Y
197
N
C
Y
198
N
C
Y
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
N
N
215
S
C
N
216
N
C
N
217
N
O
N
218
S
C
N
219
N
C
N
220
N
C
N
221
N
C
N
222
N
O
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
N
N
259
S
C
N
260
N
C
N
261
N
O
N
262
N
C
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
N
N
267
N
O
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
N
N
284
S
C
N
285
N
C
N
286
N
O
N
287
N
C
N
288
N
C
N
289
N
S
N
290
N
C
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
N
N
304
S
C
N
305
N
C
N
306
N
O
N
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
N
N
344
S
C
N
345
N
C
N
346
N
O
N
347
N
C
N
348
N
O
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
N
N
358
S
C
N
359
N
C
N
360
N
O
N
361
R
C
N
362
N
O
N
363
N
C
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
N
385
N
O
N
386
N
O
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
N
N
399
S
C
N
400
N
C
N
401
N
O
N
402
N
C
N
403
N
C
N
404
N
C
N
405
N
O
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
doub
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
Z
doub
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
E
doub
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
doub
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
doub
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
doub
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
Y
192
N
sing
Y
193
N
doub
Y
194
N
doub
N
195
N
sing
Y
196
N
sing
N
197
N
sing
Y
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
doub
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
Y
300
N
doub
Y
301
N
sing
Y
302
N
sing
N
303
N
sing
Y
304
N
doub
N
305
N
sing
Y
306
N
doub
N
307
N
sing
Y
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
doub
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
doub
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
Y
369
N
doub
Y
370
N
sing
Y
371
N
sing
N
372
N
sing
Y
373
N
doub
N
374
N
sing
Y
375
N
doub
N
376
N
sing
Y
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
doub
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
US
Nat.Struct.Mol.Biol.
1545-9993
15
924
10.1038/NSMB.1474
19172745
Structural Basis for the Activation of Pparg by Oxidised Fatty Acids
2008
10.2210/pdb2vst/pdb
pdb_00002vst
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2007-11-16
ADSC CCD
SINGLE WAVELENGTH
M
x-ray
1
0.93
1.0
ID14-3
ESRF
0.93
SYNCHROTRON
ESRF BEAMLINE ID14-3
13-(S)-HODE
31449.520
PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA
LIGAND BINDING DOMAIN, RESIDUES 202-475
2
man
polymer
296.445
(9Z,11E,13S)-13-hydroxyoctadeca-9,11-dienoic acid
2
syn
non-polymer
18.015
water
95
nat
water
PPAR GAMMA, NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 3
no
no
GALNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRI
FQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTREFLKSLRKPFG
DFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTD
LRQIVTEHVQLLQVIKKTETDMSLHPLLQEIYKDLY
GALNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRI
FQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTREFLKSLRKPFG
DFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTD
LRQIVTEHVQLLQVIKKTETDMSLHPLLQEIYKDLY
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
9606
HOMO SAPIENS
511693
ESCHERICHIA COLI
BL21
ROSETTA
PET30A MODIFIED
1
2.8
55.5
NONE
8
pH 8
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
struct_site
repository
Initial release
Database references
Derived calculations
Non-polymer description
Other
Refinement description
Source and taxonomy
Version format compliance
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2008-08-19
1
1
2012-06-06
1
2
2023-12-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
A NOVEL ANTI-ADIPOGENIC PARTIAL AGONIST OF PEROXISOMEPROLIFERATOR-ACTIVATED RECEPTOR-GAMMA ( PPARG) RECRUITSPPARG-COACTIVATOR-1 ALPHA ( PGC1A) BUT POTENTIATES INSULINSIGNALING IN VITRO
HPPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH 5-HEPA
THE 2.1 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THEHETERODIMER OF THE HUMAN RXRALPHA AND PPARGAMMA LIGANDBINDING DOMAINS RESPECTIVELY BOUND WITH 9-CIS RETINOIC ACIDAND GI262570 AND CO-ACTIVATOR PEPTIDES.
HPPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH DHA
HPPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH 4-HDHA
LIGAND-BINDING DOMAIN OF THE HUMAN PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA
LIGAND BINDING DOMAIN OF THE HUMAN PEROXISOME PROLIFERATORACTIVATED RECEPTOR GAMMA IN COMPLEX WITH A SYNTHETICAGONIST
CRYSTAL STRUCTURE OF A NEW REXINOID BOUND TO THE RXRALPHALIGAND BINDING DOAMIN IN THE RXRALPHA/PPARGAMMA HETERODIMER
LIGAND BINDING DOMAIN OF HUMAN PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR
HPPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH 6-OXOOTE
CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAIN OF HUMANPPAR-GAMMA IN COMPLEX WITH THE AGONIST AZ 242
THE 2.3 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THEHETERODIMER OF THE HUMAN PPARGAMMA AND RXRALPHA LIGANDBINDING DOMAINS RESPECTIVELY BOUND WITH GW409544 AND 9- CISRETINOIC ACID AND CO-ACTIVATOR PEPTIDES.
THE 2.1 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THEHETERODIMER OF THE HUMAN RXRALPHA AND PPARGAMMA LIGANDBINDING DOMAINS RESPECTIVELY BOUND WITH 9-CIS RETINOIC ACIDAND ROSIGLITAZONE AND CO-ACTIVATOR PEPTIDES.
STRUCTURAL AND BIOCHEMICAL BASIS FOR SELECTIVE REPRESSIONOF THE ORPHAN NUCLEAR RECEPTOR LRH -1 BY SHP
LIGAND BINDING DOMAIN OF THE HUMAN PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA
CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAIN OF HUMANPPAR-GAMMA IN COMPLEX WITH AN AGONIST
STRUCTURE-BASED DRUG DESIGN OF A NOVEL FAMILY OF PPARPARTIAL AGONISTS: VIRTUAL SCREENING, X-RAY CRYSTALLOGRAPHYAND IN VITRO/ IN VIVO BIOLOGICAL ACTIVITIES
HPPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH 9-(S)-HODE
PPARGAMMA IN COMPLEX WITH A 2-BABA COMPOUND
0072 PARTIAL AGONIST PPAR GAMMA COCRYSTAL
HPPARGAMMA LIGAND BINDING DOMAIN IN COMPLEX WITH 4-OXODHA
LIGAND BINDING DOMAIN OF THE HUMAN PEROXISOME PROLIFERATORACTIVATED RECEPTOR GAMMA IN COMPLEX WITH AN AGONIST
STRUCTURE-BASED DRUG DESIGN OF A NOVEL FAMILY OF PPARPARTIAL AGONISTS: VIRTUAL SCREENING, X-RAY CRYSTALLOGRAPHYAND IN VITRO/ IN VIVO BIOLOGICAL ACTIVITIES
PDBE
Y
PDBE
2008-04-29
REL
REL
243
(9Z,11E,13S)-13-hydroxyoctadeca-9,11-dienoic acid
HOH
water
RESIDUE NUMBERING CORRESPONDS TO ISOFORM 1
2I4P
PDB ENTRY 2I4P
PDB
experimental model
243
1477
2
243
243
1477
A
243
1476
2
243
243
1476
B
HOH
2001
3
HOH
HOH
2001
A
HOH
2002
3
HOH
HOH
2002
A
HOH
2003
3
HOH
HOH
2003
A
HOH
2004
3
HOH
HOH
2004
A
HOH
2005
3
HOH
HOH
2005
A
HOH
2006
3
HOH
HOH
2006
A
HOH
2007
3
HOH
HOH
2007
A
HOH
2008
3
HOH
HOH
2008
A
HOH
2009
3
HOH
HOH
2009
A
HOH
2010
3
HOH
HOH
2010
A
HOH
2011
3
HOH
HOH
2011
A
HOH
2012
3
HOH
HOH
2012
A
HOH
2013
3
HOH
HOH
2013
A
HOH
2014
3
HOH
HOH
2014
A
HOH
2015
3
HOH
HOH
2015
A
HOH
2016
3
HOH
HOH
2016
A
HOH
2017
3
HOH
HOH
2017
A
HOH
2018
3
HOH
HOH
2018
A
HOH
2019
3
HOH
HOH
2019
A
HOH
2020
3
HOH
HOH
2020
A
HOH
2021
3
HOH
HOH
2021
A
HOH
2022
3
HOH
HOH
2022
A
HOH
2023
3
HOH
HOH
2023
A
HOH
2024
3
HOH
HOH
2024
A
HOH
2025
3
HOH
HOH
2025
A
HOH
2026
3
HOH
HOH
2026
A
HOH
2027
3
HOH
HOH
2027
A
HOH
2028
3
HOH
HOH
2028
A
HOH
2029
3
HOH
HOH
2029
A
HOH
2030
3
HOH
HOH
2030
A
HOH
2031
3
HOH
HOH
2031
A
HOH
2032
3
HOH
HOH
2032
A
HOH
2033
3
HOH
HOH
2033
A
HOH
2034
3
HOH
HOH
2034
A
HOH
2035
3
HOH
HOH
2035
A
HOH
2036
3
HOH
HOH
2036
A
HOH
2037
3
HOH
HOH
2037
A
HOH
2038
3
HOH
HOH
2038
A
HOH
2039
3
HOH
HOH
2039
A
HOH
2040
3
HOH
HOH
2040
A
HOH
2041
3
HOH
HOH
2041
A
HOH
2042
3
HOH
HOH
2042
A
HOH
2043
3
HOH
HOH
2043
A
HOH
2044
3
HOH
HOH
2044
A
HOH
2045
3
HOH
HOH
2045
A
HOH
2046
3
HOH
HOH
2046
A
HOH
2047
3
HOH
HOH
2047
A
HOH
2048
3
HOH
HOH
2048
A
HOH
2049
3
HOH
HOH
2049
A
HOH
2050
3
HOH
HOH
2050
A
HOH
2051
3
HOH
HOH
2051
A
HOH
2052
3
HOH
HOH
2052
A
HOH
2053
3
HOH
HOH
2053
A
HOH
2054
3
HOH
HOH
2054
A
HOH
2055
3
HOH
HOH
2055
A
HOH
2056
3
HOH
HOH
2056
A
HOH
2057
3
HOH
HOH
2057
A
HOH
2001
3
HOH
HOH
2001
B
HOH
2002
3
HOH
HOH
2002
B
HOH
2003
3
HOH
HOH
2003
B
HOH
2004
3
HOH
HOH
2004
B
HOH
2005
3
HOH
HOH
2005
B
HOH
2006
3
HOH
HOH
2006
B
HOH
2007
3
HOH
HOH
2007
B
HOH
2008
3
HOH
HOH
2008
B
HOH
2009
3
HOH
HOH
2009
B
HOH
2010
3
HOH
HOH
2010
B
HOH
2011
3
HOH
HOH
2011
B
HOH
2012
3
HOH
HOH
2012
B
HOH
2013
3
HOH
HOH
2013
B
HOH
2014
3
HOH
HOH
2014
B
HOH
2015
3
HOH
HOH
2015
B
HOH
2016
3
HOH
HOH
2016
B
HOH
2017
3
HOH
HOH
2017
B
HOH
2018
3
HOH
HOH
2018
B
HOH
2019
3
HOH
HOH
2019
B
HOH
2020
3
HOH
HOH
2020
B
HOH
2021
3
HOH
HOH
2021
B
HOH
2022
3
HOH
HOH
2022
B
HOH
2023
3
HOH
HOH
2023
B
HOH
2024
3
HOH
HOH
2024
B
HOH
2025
3
HOH
HOH
2025
B
HOH
2026
3
HOH
HOH
2026
B
HOH
2027
3
HOH
HOH
2027
B
HOH
2028
3
HOH
HOH
2028
B
HOH
2029
3
HOH
HOH
2029
B
HOH
2030
3
HOH
HOH
2030
B
HOH
2031
3
HOH
HOH
2031
B
HOH
2032
3
HOH
HOH
2032
B
HOH
2033
3
HOH
HOH
2033
B
HOH
2034
3
HOH
HOH
2034
B
HOH
2035
3
HOH
HOH
2035
B
HOH
2036
3
HOH
HOH
2036
B
HOH
2037
3
HOH
HOH
2037
B
HOH
2038
3
HOH
HOH
2038
B
n
1
202
A
n
2
203
A
LEU
204
n
3
LEU
204
A
ASN
205
n
4
ASN
205
A
PRO
206
n
5
PRO
206
A
GLU
207
n
6
GLU
207
A
SER
208
n
7
SER
208
A
ALA
209
n
8
ALA
209
A
ASP
210
n
9
ASP
210
A
LEU
211
n
10
LEU
211
A
ARG
212
n
11
ARG
212
A
ALA
213
n
12
ALA
213
A
LEU
214
n
13
LEU
214
A
ALA
215
n
14
ALA
215
A
LYS
216
n
15
LYS
216
A
HIS
217
n
16
HIS
217
A
LEU
218
n
17
LEU
218
A
TYR
219
n
18
TYR
219
A
ASP
220
n
19
ASP
220
A
SER
221
n
20
SER
221
A
TYR
222
n
21
TYR
222
A
ILE
223
n
22
ILE
223
A
LYS
224
n
23
LYS
224
A
SER
225
n
24
SER
225
A
PHE
226
n
25
PHE
226
A
PRO
227
n
26
PRO
227
A
LEU
228
n
27
LEU
228
A
THR
229
n
28
THR
229
A
LYS
230
n
29
LYS
230
A
ALA
231
n
30
ALA
231
A
LYS
232
n
31
LYS
232
A
ALA
233
n
32
ALA
233
A
ARG
234
n
33
ARG
234
A
ALA
235
n
34
ALA
235
A
ILE
236
n
35
ILE
236
A
LEU
237
n
36
LEU
237
A
THR
238
n
37
THR
238
A
GLY
239
n
38
GLY
239
A
LYS
240
n
39
LYS
240
A
THR
241
n
40
THR
241
A
THR
242
n
41
THR
242
A
ASP
243
n
42
ASP
243
A
LYS
244
n
43
LYS
244
A
SER
245
n
44
SER
245
A
PRO
246
n
45
PRO
246
A
PHE
247
n
46
PHE
247
A
VAL
248
n
47
VAL
248
A
ILE
249
n
48
ILE
249
A
TYR
250
n
49
TYR
250
A
ASP
251
n
50
ASP
251
A
MET
252
n
51
MET
252
A
ASN
253
n
52
ASN
253
A
SER
254
n
53
SER
254
A
LEU
255
n
54
LEU
255
A
MET
256
n
55
MET
256
A
MET
257
n
56
MET
257
A
GLY
258
n
57
GLY
258
A
GLU
259
n
58
GLU
259
A
ASP
260
n
59
ASP
260
A
LYS
261
n
60
LYS
261
A
ILE
262
n
61
ILE
262
A
n
62
263
A
n
63
264
A
n
64
265
A
n
65
266
A
n
66
267
A
n
67
268
A
n
68
269
A
n
69
270
A
n
70
271
A
n
71
272
A
n
72
273
A
n
73
274
A
LYS
275
n
74
LYS
275
A
GLU
276
n
75
GLU
276
A
VAL
277
n
76
VAL
277
A
ALA
278
n
77
ALA
278
A
ILE
279
n
78
ILE
279
A
ARG
280
n
79
ARG
280
A
ILE
281
n
80
ILE
281
A
PHE
282
n
81
PHE
282
A
GLN
283
n
82
GLN
283
A
GLY
284
n
83
GLY
284
A
CYS
285
n
84
CYS
285
A
GLN
286
n
85
GLN
286
A
PHE
287
n
86
PHE
287
A
ARG
288
n
87
ARG
288
A
SER
289
n
88
SER
289
A
VAL
290
n
89
VAL
290
A
GLU
291
n
90
GLU
291
A
ALA
292
n
91
ALA
292
A
VAL
293
n
92
VAL
293
A
GLN
294
n
93
GLN
294
A
GLU
295
n
94
GLU
295
A
ILE
296
n
95
ILE
296
A
THR
297
n
96
THR
297
A
GLU
298
n
97
GLU
298
A
TYR
299
n
98
TYR
299
A
ALA
300
n
99
ALA
300
A
LYS
301
n
100
LYS
301
A
SER
302
n
101
SER
302
A
ILE
303
n
102
ILE
303
A
PRO
304
n
103
PRO
304
A
GLY
305
n
104
GLY
305
A
PHE
306
n
105
PHE
306
A
VAL
307
n
106
VAL
307
A
ASN
308
n
107
ASN
308
A
LEU
309
n
108
LEU
309
A
ASP
310
n
109
ASP
310
A
LEU
311
n
110
LEU
311
A
ASN
312
n
111
ASN
312
A
ASP
313
n
112
ASP
313
A
GLN
314
n
113
GLN
314
A
VAL
315
n
114
VAL
315
A
THR
316
n
115
THR
316
A
LEU
317
n
116
LEU
317
A
LEU
318
n
117
LEU
318
A
LYS
319
n
118
LYS
319
A
TYR
320
n
119
TYR
320
A
GLY
321
n
120
GLY
321
A
VAL
322
n
121
VAL
322
A
HIS
323
n
122
HIS
323
A
GLU
324
n
123
GLU
324
A
ILE
325
n
124
ILE
325
A
ILE
326
n
125
ILE
326
A
TYR
327
n
126
TYR
327
A
THR
328
n
127
THR
328
A
MET
329
n
128
MET
329
A
LEU
330
n
129
LEU
330
A
ALA
331
n
130
ALA
331
A
SER
332
n
131
SER
332
A
LEU
333
n
132
LEU
333
A
MET
334
n
133
MET
334
A
ASN
335
n
134
ASN
335
A
LYS
336
n
135
LYS
336
A
ASP
337
n
136
ASP
337
A
GLY
338
n
137
GLY
338
A
VAL
339
n
138
VAL
339
A
LEU
340
n
139
LEU
340
A
ILE
341
n
140
ILE
341
A
SER
342
n
141
SER
342
A
GLU
343
n
142
GLU
343
A
GLY
344
n
143
GLY
344
A
GLN
345
n
144
GLN
345
A
GLY
346
n
145
GLY
346
A
PHE
347
n
146
PHE
347
A
MET
348
n
147
MET
348
A
THR
349
n
148
THR
349
A
ARG
350
n
149
ARG
350
A
GLU
351
n
150
GLU
351
A
PHE
352
n
151
PHE
352
A
LEU
353
n
152
LEU
353
A
LYS
354
n
153
LYS
354
A
SER
355
n
154
SER
355
A
LEU
356
n
155
LEU
356
A
ARG
357
n
156
ARG
357
A
LYS
358
n
157
LYS
358
A
PRO
359
n
158
PRO
359
A
PHE
360
n
159
PHE
360
A
GLY
361
n
160
GLY
361
A
ASP
362
n
161
ASP
362
A
PHE
363
n
162
PHE
363
A
MET
364
n
163
MET
364
A
GLU
365
n
164
GLU
365
A
PRO
366
n
165
PRO
366
A
LYS
367
n
166
LYS
367
A
PHE
368
n
167
PHE
368
A
GLU
369
n
168
GLU
369
A
PHE
370
n
169
PHE
370
A
ALA
371
n
170
ALA
371
A
VAL
372
n
171
VAL
372
A
LYS
373
n
172
LYS
373
A
PHE
374
n
173
PHE
374
A
ASN
375
n
174
ASN
375
A
ALA
376
n
175
ALA
376
A
LEU
377
n
176
LEU
377
A
GLU
378
n
177
GLU
378
A
LEU
379
n
178
LEU
379
A
ASP
380
n
179
ASP
380
A
ASP
381
n
180
ASP
381
A
SER
382
n
181
SER
382
A
ASP
383
n
182
ASP
383
A
LEU
384
n
183
LEU
384
A
ALA
385
n
184
ALA
385
A
ILE
386
n
185
ILE
386
A
PHE
387
n
186
PHE
387
A
ILE
388
n
187
ILE
388
A
ALA
389
n
188
ALA
389
A
VAL
390
n
189
VAL
390
A
ILE
391
n
190
ILE
391
A
ILE
392
n
191
ILE
392
A
LEU
393
n
192
LEU
393
A
SER
394
n
193
SER
394
A
GLY
395
n
194
GLY
395
A
ASP
396
n
195
ASP
396
A
ARG
397
n
196
ARG
397
A
PRO
398
n
197
PRO
398
A
GLY
399
n
198
GLY
399
A
LEU
400
n
199
LEU
400
A
LEU
401
n
200
LEU
401
A
ASN
402
n
201
ASN
402
A
VAL
403
n
202
VAL
403
A
LYS
404
n
203
LYS
404
A
PRO
405
n
204
PRO
405
A
ILE
406
n
205
ILE
406
A
GLU
407
n
206
GLU
407
A
ASP
408
n
207
ASP
408
A
ILE
409
n
208
ILE
409
A
GLN
410
n
209
GLN
410
A
ASP
411
n
210
ASP
411
A
ASN
412
n
211
ASN
412
A
LEU
413
n
212
LEU
413
A
LEU
414
n
213
LEU
414
A
GLN
415
n
214
GLN
415
A
ALA
416
n
215
ALA
416
A
LEU
417
n
216
LEU
417
A
GLU
418
n
217
GLU
418
A
LEU
419
n
218
LEU
419
A
GLN
420
n
219
GLN
420
A
LEU
421
n
220
LEU
421
A
LYS
422
n
221
LYS
422
A
LEU
423
n
222
LEU
423
A
ASN
424
n
223
ASN
424
A
HIS
425
n
224
HIS
425
A
PRO
426
n
225
PRO
426
A
GLU
427
n
226
GLU
427
A
SER
428
n
227
SER
428
A
SER
429
n
228
SER
429
A
GLN
430
n
229
GLN
430
A
LEU
431
n
230
LEU
431
A
PHE
432
n
231
PHE
432
A
ALA
433
n
232
ALA
433
A
LYS
434
n
233
LYS
434
A
LEU
435
n
234
LEU
435
A
LEU
436
n
235
LEU
436
A
GLN
437
n
236
GLN
437
A
LYS
438
n
237
LYS
438
A
MET
439
n
238
MET
439
A
THR
440
n
239
THR
440
A
ASP
441
n
240
ASP
441
A
LEU
442
n
241
LEU
442
A
ARG
443
n
242
ARG
443
A
GLN
444
n
243
GLN
444
A
ILE
445
n
244
ILE
445
A
VAL
446
n
245
VAL
446
A
THR
447
n
246
THR
447
A
GLU
448
n
247
GLU
448
A
HIS
449
n
248
HIS
449
A
VAL
450
n
249
VAL
450
A
GLN
451
n
250
GLN
451
A
LEU
452
n
251
LEU
452
A
LEU
453
n
252
LEU
453
A
GLN
454
n
253
GLN
454
A
VAL
455
n
254
VAL
455
A
ILE
456
n
255
ILE
456
A
LYS
457
n
256
LYS
457
A
LYS
458
n
257
LYS
458
A
THR
459
n
258
THR
459
A
GLU
460
n
259
GLU
460
A
THR
461
n
260
THR
461
A
ASP
462
n
261
ASP
462
A
MET
463
n
262
MET
463
A
SER
464
n
263
SER
464
A
LEU
465
n
264
LEU
465
A
HIS
466
n
265
HIS
466
A
PRO
467
n
266
PRO
467
A
LEU
468
n
267
LEU
468
A
LEU
469
n
268
LEU
469
A
GLN
470
n
269
GLN
470
A
GLU
471
n
270
GLU
471
A
ILE
472
n
271
ILE
472
A
TYR
473
n
272
TYR
473
A
LYS
474
n
273
LYS
474
A
ASP
475
n
274
ASP
475
A
n
275
476
A
n
276
477
A
n
1
202
B
n
2
203
B
n
3
204
B
n
4
205
B
n
5
206
B
GLU
207
n
6
GLU
207
B
SER
208
n
7
SER
208
B
ALA
209
n
8
ALA
209
B
ASP
210
n
9
ASP
210
B
LEU
211
n
10
LEU
211
B
ARG
212
n
11
ARG
212
B
ALA
213
n
12
ALA
213
B
LEU
214
n
13
LEU
214
B
ALA
215
n
14
ALA
215
B
LYS
216
n
15
LYS
216
B
HIS
217
n
16
HIS
217
B
LEU
218
n
17
LEU
218
B
TYR
219
n
18
TYR
219
B
ASP
220
n
19
ASP
220
B
SER
221
n
20
SER
221
B
TYR
222
n
21
TYR
222
B
ILE
223
n
22
ILE
223
B
LYS
224
n
23
LYS
224
B
SER
225
n
24
SER
225
B
PHE
226
n
25
PHE
226
B
PRO
227
n
26
PRO
227
B
LEU
228
n
27
LEU
228
B
THR
229
n
28
THR
229
B
LYS
230
n
29
LYS
230
B
ALA
231
n
30
ALA
231
B
LYS
232
n
31
LYS
232
B
ALA
233
n
32
ALA
233
B
ARG
234
n
33
ARG
234
B
ALA
235
n
34
ALA
235
B
ILE
236
n
35
ILE
236
B
LEU
237
n
36
LEU
237
B
THR
238
n
37
THR
238
B
GLY
239
n
38
GLY
239
B
n
39
240
B
n
40
241
B
n
41
242
B
n
42
243
B
LYS
244
n
43
LYS
244
B
SER
245
n
44
SER
245
B
PRO
246
n
45
PRO
246
B
PHE
247
n
46
PHE
247
B
VAL
248
n
47
VAL
248
B
ILE
249
n
48
ILE
249
B
TYR
250
n
49
TYR
250
B
ASP
251
n
50
ASP
251
B
MET
252
n
51
MET
252
B
ASN
253
n
52
ASN
253
B
SER
254
n
53
SER
254
B
LEU
255
n
54
LEU
255
B
MET
256
n
55
MET
256
B
MET
257
n
56
MET
257
B
GLY
258
n
57
GLY
258
B
GLU
259
n
58
GLU
259
B
ASP
260
n
59
ASP
260
B
LYS
261
n
60
LYS
261
B
n
61
262
B
n
62
263
B
n
63
264
B
n
64
265
B
HIS
266
n
65
HIS
266
B
ILE
267
n
66
ILE
267
B
THR
268
n
67
THR
268
B
n
68
269
B
n
69
270
B
n
70
271
B
n
71
272
B
n
72
273
B
n
73
274
B
LYS
275
n
74
LYS
275
B
GLU
276
n
75
GLU
276
B
VAL
277
n
76
VAL
277
B
ALA
278
n
77
ALA
278
B
ILE
279
n
78
ILE
279
B
ARG
280
n
79
ARG
280
B
ILE
281
n
80
ILE
281
B
PHE
282
n
81
PHE
282
B
GLN
283
n
82
GLN
283
B
GLY
284
n
83
GLY
284
B
CYS
285
n
84
CYS
285
B
GLN
286
n
85
GLN
286
B
PHE
287
n
86
PHE
287
B
ARG
288
n
87
ARG
288
B
SER
289
n
88
SER
289
B
VAL
290
n
89
VAL
290
B
GLU
291
n
90
GLU
291
B
ALA
292
n
91
ALA
292
B
VAL
293
n
92
VAL
293
B
GLN
294
n
93
GLN
294
B
GLU
295
n
94
GLU
295
B
ILE
296
n
95
ILE
296
B
THR
297
n
96
THR
297
B
GLU
298
n
97
GLU
298
B
TYR
299
n
98
TYR
299
B
ALA
300
n
99
ALA
300
B
LYS
301
n
100
LYS
301
B
SER
302
n
101
SER
302
B
ILE
303
n
102
ILE
303
B
PRO
304
n
103
PRO
304
B
GLY
305
n
104
GLY
305
B
PHE
306
n
105
PHE
306
B
VAL
307
n
106
VAL
307
B
ASN
308
n
107
ASN
308
B
LEU
309
n
108
LEU
309
B
ASP
310
n
109
ASP
310
B
LEU
311
n
110
LEU
311
B
ASN
312
n
111
ASN
312
B
ASP
313
n
112
ASP
313
B
GLN
314
n
113
GLN
314
B
VAL
315
n
114
VAL
315
B
THR
316
n
115
THR
316
B
LEU
317
n
116
LEU
317
B
LEU
318
n
117
LEU
318
B
LYS
319
n
118
LYS
319
B
TYR
320
n
119
TYR
320
B
GLY
321
n
120
GLY
321
B
VAL
322
n
121
VAL
322
B
HIS
323
n
122
HIS
323
B
GLU
324
n
123
GLU
324
B
ILE
325
n
124
ILE
325
B
ILE
326
n
125
ILE
326
B
TYR
327
n
126
TYR
327
B
THR
328
n
127
THR
328
B
MET
329
n
128
MET
329
B
LEU
330
n
129
LEU
330
B
ALA
331
n
130
ALA
331
B
SER
332
n
131
SER
332
B
LEU
333
n
132
LEU
333
B
MET
334
n
133
MET
334
B
ASN
335
n
134
ASN
335
B
LYS
336
n
135
LYS
336
B
ASP
337
n
136
ASP
337
B
GLY
338
n
137
GLY
338
B
VAL
339
n
138
VAL
339
B
LEU
340
n
139
LEU
340
B
ILE
341
n
140
ILE
341
B
SER
342
n
141
SER
342
B
GLU
343
n
142
GLU
343
B
GLY
344
n
143
GLY
344
B
GLN
345
n
144
GLN
345
B
GLY
346
n
145
GLY
346
B
PHE
347
n
146
PHE
347
B
MET
348
n
147
MET
348
B
THR
349
n
148
THR
349
B
ARG
350
n
149
ARG
350
B
GLU
351
n
150
GLU
351
B
PHE
352
n
151
PHE
352
B
LEU
353
n
152
LEU
353
B
LYS
354
n
153
LYS
354
B
SER
355
n
154
SER
355
B
LEU
356
n
155
LEU
356
B
ARG
357
n
156
ARG
357
B
LYS
358
n
157
LYS
358
B
PRO
359
n
158
PRO
359
B
PHE
360
n
159
PHE
360
B
GLY
361
n
160
GLY
361
B
ASP
362
n
161
ASP
362
B
PHE
363
n
162
PHE
363
B
MET
364
n
163
MET
364
B
GLU
365
n
164
GLU
365
B
PRO
366
n
165
PRO
366
B
LYS
367
n
166
LYS
367
B
PHE
368
n
167
PHE
368
B
GLU
369
n
168
GLU
369
B
PHE
370
n
169
PHE
370
B
ALA
371
n
170
ALA
371
B
VAL
372
n
171
VAL
372
B
LYS
373
n
172
LYS
373
B
PHE
374
n
173
PHE
374
B
ASN
375
n
174
ASN
375
B
ALA
376
n
175
ALA
376
B
LEU
377
n
176
LEU
377
B
GLU
378
n
177
GLU
378
B
LEU
379
n
178
LEU
379
B
ASP
380
n
179
ASP
380
B
ASP
381
n
180
ASP
381
B
SER
382
n
181
SER
382
B
ASP
383
n
182
ASP
383
B
LEU
384
n
183
LEU
384
B
ALA
385
n
184
ALA
385
B
ILE
386
n
185
ILE
386
B
PHE
387
n
186
PHE
387
B
ILE
388
n
187
ILE
388
B
ALA
389
n
188
ALA
389
B
VAL
390
n
189
VAL
390
B
ILE
391
n
190
ILE
391
B
ILE
392
n
191
ILE
392
B
LEU
393
n
192
LEU
393
B
SER
394
n
193
SER
394
B
GLY
395
n
194
GLY
395
B
ASP
396
n
195
ASP
396
B
ARG
397
n
196
ARG
397
B
PRO
398
n
197
PRO
398
B
GLY
399
n
198
GLY
399
B
LEU
400
n
199
LEU
400
B
LEU
401
n
200
LEU
401
B
ASN
402
n
201
ASN
402
B
VAL
403
n
202
VAL
403
B
LYS
404
n
203
LYS
404
B
PRO
405
n
204
PRO
405
B
ILE
406
n
205
ILE
406
B
GLU
407
n
206
GLU
407
B
ASP
408
n
207
ASP
408
B
ILE
409
n
208
ILE
409
B
GLN
410
n
209
GLN
410
B
ASP
411
n
210
ASP
411
B
ASN
412
n
211
ASN
412
B
LEU
413
n
212
LEU
413
B
LEU
414
n
213
LEU
414
B
GLN
415
n
214
GLN
415
B
ALA
416
n
215
ALA
416
B
LEU
417
n
216
LEU
417
B
GLU
418
n
217
GLU
418
B
LEU
419
n
218
LEU
419
B
GLN
420
n
219
GLN
420
B
LEU
421
n
220
LEU
421
B
LYS
422
n
221
LYS
422
B
LEU
423
n
222
LEU
423
B
ASN
424
n
223
ASN
424
B
HIS
425
n
224
HIS
425
B
PRO
426
n
225
PRO
426
B
GLU
427
n
226
GLU
427
B
SER
428
n
227
SER
428
B
SER
429
n
228
SER
429
B
GLN
430
n
229
GLN
430
B
LEU
431
n
230
LEU
431
B
PHE
432
n
231
PHE
432
B
ALA
433
n
232
ALA
433
B
LYS
434
n
233
LYS
434
B
LEU
435
n
234
LEU
435
B
LEU
436
n
235
LEU
436
B
GLN
437
n
236
GLN
437
B
LYS
438
n
237
LYS
438
B
MET
439
n
238
MET
439
B
THR
440
n
239
THR
440
B
ASP
441
n
240
ASP
441
B
LEU
442
n
241
LEU
442
B
ARG
443
n
242
ARG
443
B
GLN
444
n
243
GLN
444
B
ILE
445
n
244
ILE
445
B
VAL
446
n
245
VAL
446
B
THR
447
n
246
THR
447
B
GLU
448
n
247
GLU
448
B
HIS
449
n
248
HIS
449
B
VAL
450
n
249
VAL
450
B
GLN
451
n
250
GLN
451
B
LEU
452
n
251
LEU
452
B
LEU
453
n
252
LEU
453
B
GLN
454
n
253
GLN
454
B
VAL
455
n
254
VAL
455
B
ILE
456
n
255
ILE
456
B
LYS
457
n
256
LYS
457
B
LYS
458
n
257
LYS
458
B
THR
459
n
258
THR
459
B
n
259
460
B
n
260
461
B
n
261
462
B
n
262
463
B
n
263
464
B
n
264
465
B
HIS
466
n
265
HIS
466
B
PRO
467
n
266
PRO
467
B
LEU
468
n
267
LEU
468
B
LEU
469
n
268
LEU
469
B
GLN
470
n
269
GLN
470
B
GLU
471
n
270
GLU
471
B
ILE
472
n
271
ILE
472
B
TYR
473
n
272
TYR
473
B
LYS
474
n
273
LYS
474
B
n
274
475
B
n
275
476
B
n
276
477
B
author_and_software_defined_assembly
PQS
1
monomeric
author_and_software_defined_assembly
PQS
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
249
A
N
ILE
48
A
O
PHE
347
A
O
PHE
146
A
N
MET
348
A
N
MET
147
A
O
VAL
339
A
O
VAL
138
A
N
GLY
338
A
N
GLY
137
A
O
ASN
335
A
O
ASN
134
B
N
ILE
249
B
N
ILE
48
B
O
PHE
347
B
O
PHE
146
B
N
MET
348
B
N
MET
147
B
O
VAL
339
B
O
VAL
138
B
N
GLY
338
B
N
GLY
137
B
O
ASN
335
B
O
ASN
134
1
A
CG
LEU
204
A
CG
LEU
3
1
Y
1
A
CD1
LEU
204
A
CD1
LEU
3
1
Y
1
A
CD2
LEU
204
A
CD2
LEU
3
1
Y
1
A
GLY
202
A
GLY
1
1
Y
1
A
ALA
203
A
ALA
2
1
Y
1
A
LYS
263
A
LYS
62
1
Y
1
A
PHE
264
A
PHE
63
1
Y
1
A
LYS
265
A
LYS
64
1
Y
1
A
HIS
266
A
HIS
65
1
Y
1
A
ILE
267
A
ILE
66
1
Y
1
A
THR
268
A
THR
67
1
Y
1
A
PRO
269
A
PRO
68
1
Y
1
A
LEU
270
A
LEU
69
1
Y
1
A
GLN
271
A
GLN
70
1
Y
1
A
GLU
272
A
GLU
71
1
Y
1
A
GLN
273
A
GLN
72
1
Y
1
A
SER
274
A
SER
73
1
Y
1
A
LEU
476
A
LEU
275
1
Y
1
A
TYR
477
A
TYR
276
1
Y
1
B
GLY
202
B
GLY
1
1
Y
1
B
ALA
203
B
ALA
2
1
Y
1
B
LEU
204
B
LEU
3
1
Y
1
B
ASN
205
B
ASN
4
1
Y
1
B
PRO
206
B
PRO
5
1
Y
1
B
LYS
240
B
LYS
39
1
Y
1
B
THR
241
B
THR
40
1
Y
1
B
THR
242
B
THR
41
1
Y
1
B
ASP
243
B
ASP
42
1
Y
1
B
ILE
262
B
ILE
61
1
Y
1
B
LYS
263
B
LYS
62
1
Y
1
B
PHE
264
B
PHE
63
1
Y
1
B
LYS
265
B
LYS
64
1
Y
1
B
PRO
269
B
PRO
68
1
Y
1
B
LEU
270
B
LEU
69
1
Y
1
B
GLN
271
B
GLN
70
1
Y
1
B
GLU
272
B
GLU
71
1
Y
1
B
GLN
273
B
GLN
72
1
Y
1
B
SER
274
B
SER
73
1
Y
1
B
GLU
460
B
GLU
259
1
Y
1
B
THR
461
B
THR
260
1
Y
1
B
ASP
462
B
ASP
261
1
Y
1
B
MET
463
B
MET
262
1
Y
1
B
SER
464
B
SER
263
1
Y
1
B
LEU
465
B
LEU
264
1
Y
1
B
ASP
475
B
ASP
274
1
Y
1
B
LEU
476
B
LEU
275
1
Y
1
B
TYR
477
B
TYR
276
1
Y
1
A
LYS
240
-69.45
38.10
1
A
THR
242
-175.26
-32.20
1
A
GLU
259
-66.36
0.96
1
A
LYS
474
-77.21
38.05
1
B
PRO
304
-38.76
119.32
1
B
LYS
354
-68.42
2.26
1
B
TYR
473
-104.18
62.20
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
13H.PARAM
13H.TOP
53.6
-5.12
0.00
2.67
21.22
0.00
-16.10
BULK SOLVENT MODEL USED
0.274
0.007
0.234
0.234
2.35
48.83
1359
27194
5.0
99.0
RANDOM
1758220.17
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 2I4P
MLF
FLAT MODEL
50.9038
0.35
0.40
0.33
5.00
0.46
0.37
2.35
48.83
95
4199
42
0
4062
0.010
1.3
19.3
0.88
1.36
1.50
2.29
2.00
1.95
2.00
3.01
2.50
0.341
0.022
0.313
2.50
248
4267
6
5.5
99.9
34.1
2.35
48.83
2VST
27194
0.0
0.05
1
15.00
2.9
99.3
0.25
2.35
2.48
3.80
1
2.9
99.9
refinement
CNS
1.2
data reduction
MOSFLM
data scaling
SCALA
phasing
PHASER
hPPARgamma Ligand binding domain in complex with 13-(S)-HODE
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
A
ASN
205
A
ASN
4
HELX_P
A
PHE
226
A
PHE
25
1
1
22
A
THR
229
A
THR
28
HELX_P
A
THR
238
A
THR
37
1
2
10
A
ASP
251
A
ASP
50
HELX_P
A
GLU
259
A
GLU
58
1
3
9
A
GLU
276
A
GLU
75
HELX_P
A
ILE
303
A
ILE
102
1
4
28
A
GLY
305
A
GLY
104
HELX_P
A
LEU
309
A
LEU
108
5
5
5
A
ASP
310
A
ASP
109
HELX_P
A
LEU
333
A
LEU
132
1
6
24
A
ARG
350
A
ARG
149
HELX_P
A
SER
355
A
SER
154
1
7
6
A
PRO
359
A
PRO
158
HELX_P
A
PHE
363
A
PHE
162
5
8
5
A
MET
364
A
MET
163
HELX_P
A
ALA
376
A
ALA
175
1
9
13
A
ASP
380
A
ASP
179
HELX_P
A
LEU
393
A
LEU
192
1
10
14
A
ASN
402
A
ASN
201
HELX_P
A
HIS
425
A
HIS
224
1
11
24
A
GLN
430
A
GLN
229
HELX_P
A
GLU
460
A
GLU
259
1
12
31
A
HIS
466
A
HIS
265
HELX_P
A
LYS
474
A
LYS
273
1
13
9
B
SER
208
B
SER
7
HELX_P
B
PHE
226
B
PHE
25
1
14
19
B
THR
229
B
THR
28
HELX_P
B
THR
238
B
THR
37
1
15
10
B
ASP
251
B
ASP
50
HELX_P
B
GLU
259
B
GLU
58
1
16
9
B
GLU
276
B
GLU
75
HELX_P
B
ILE
303
B
ILE
102
1
17
28
B
ASP
310
B
ASP
109
HELX_P
B
LEU
333
B
LEU
132
1
18
24
B
ARG
350
B
ARG
149
HELX_P
B
LYS
354
B
LYS
153
1
19
5
B
MET
364
B
MET
163
HELX_P
B
ALA
376
B
ALA
175
1
20
13
B
ASP
380
B
ASP
179
HELX_P
B
LEU
393
B
LEU
192
1
21
14
B
ASN
402
B
ASN
201
HELX_P
B
HIS
425
B
HIS
224
1
22
24
B
GLN
430
B
GLN
229
HELX_P
B
LYS
457
B
LYS
256
1
23
28
B
HIS
466
B
HIS
265
HELX_P
B
TYR
473
B
TYR
272
1
24
8
RECEPTOR
TRANSCRIPTION REGULATION, ALTERNATIVE SPLICING, LIGAND BINDING DOMAIN, NUCLEAR RECEPTOR, DIABETES MELLITUS, ZINC-FINGER, DNA-BINDING, POLYMORPHISM, TRANSCRIPTION, ZINC, OBESITY, NUCLEUS, RECEPTOR, ACTIVATOR, OXIDISED FATTY ACID, TRANSCRIPTION FACTOR, METAL-BINDING, PHOSPHOPROTEIN, DISEASE MUTATION
A
LYS
358
A
LYS
157
1
A
PRO
359
A
PRO
158
0.12
B
LYS
358
B
LYS
157
1
B
PRO
359
B
PRO
158
-0.01
2VST
PDB
1
2VST
PPARG_HUMAN
UNP
1
P37231
202
203
2VST
202
203
2VST
A
1
1
2
202
475
2VST
204
477
P37231
A
2
3
276
202
203
2VST
202
203
2VST
B
1
1
2
202
475
2VST
204
477
P37231
B
2
3
276
4
4
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
PHE
247
A
PHE
46
A
ILE
249
A
ILE
48
A
GLY
346
A
GLY
145
A
THR
349
A
THR
148
A
GLY
338
A
GLY
137
A
ILE
341
A
ILE
140
A
MET
334
A
MET
133
A
ASN
335
A
ASN
134
B
PHE
247
B
PHE
46
B
ILE
249
B
ILE
48
B
GLY
346
B
GLY
145
B
THR
349
B
THR
148
B
GLY
338
B
GLY
137
B
ILE
341
B
ILE
140
B
MET
334
B
MET
133
B
ASN
335
B
ASN
134
BINDING SITE FOR RESIDUE 243 A 1477
A
243
1477
Software
10
BINDING SITE FOR RESIDUE 243 B 1476
B
243
1476
Software
7
A
ILE
281
A
ILE
80
10
1_555
A
CYS
285
A
CYS
84
10
1_555
A
ARG
288
A
ARG
87
10
1_555
A
ILE
326
A
ILE
125
10
1_555
A
LEU
330
A
LEU
129
10
1_555
A
VAL
339
A
VAL
138
10
1_555
A
LEU
340
A
LEU
139
10
1_555
A
ILE
341
A
ILE
140
10
1_555
A
SER
342
A
SER
141
10
1_555
A
MET
364
A
MET
163
10
1_555
B
HIS
266
B
HIS
65
7
1_555
B
ILE
281
B
ILE
80
7
1_555
B
ARG
288
B
ARG
87
7
1_555
B
ILE
341
B
ILE
140
7
1_555
B
SER
342
B
SER
141
7
1_555
B
MET
364
B
MET
163
7
1_555
B
HOH
2018
F
HOH
7
1_555
5
C 1 2 1