0.021681
0.000000
0.008284
0.000000
0.018694
0.000000
0.000000
0.000000
0.017473
0.00000
0.00000
0.00000
Read, J.
Brassington, C.A.
Green, I.
McCall, E.J.
Valentine, A.L.
Barratt, D.
Leach, A.G.
Kettle, J.G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
110.91
90.00
46.123
53.492
61.265
C21 H20 Cl N5 O3
425.868
N'-(5-CHLORO-1,3-BENZODIOXOL-4-YL)-N-(3-MORPHOLIN-4-YLPHENYL)PYRIMIDINE-2,4-DIAMINE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
CL
Y
2
N
C
Y
3
N
C
Y
4
N
C
Y
5
N
C
N
6
N
O
N
7
N
C
N
8
N
O
Y
9
N
C
Y
10
N
C
N
11
N
N
Y
12
N
C
Y
13
N
C
Y
14
N
C
Y
15
N
N
Y
16
N
C
N
17
N
N
Y
18
N
C
Y
19
N
C
Y
20
N
C
Y
21
N
C
Y
22
N
C
Y
23
N
C
N
24
N
N
N
25
N
C
N
26
N
C
N
27
N
O
N
28
N
C
N
29
N
C
Y
30
N
N
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
O
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
N
N
65
S
C
N
66
N
C
N
67
N
O
N
68
N
C
N
69
N
C
N
70
N
C
N
71
N
N
N
72
N
C
N
73
N
N
N
74
N
N
N
75
N
O
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
N
N
92
S
C
N
93
N
C
N
94
N
O
N
95
N
C
N
96
N
C
N
97
N
O
N
98
N
N
N
99
N
O
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
O
N
115
N
O
N
116
N
O
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
N
N
125
R
C
N
126
N
C
N
127
N
O
N
128
N
C
N
129
N
S
N
130
N
O
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
S
C
N
140
N
C
N
141
N
O
N
142
N
C
N
143
N
C
N
144
N
C
N
145
N
O
N
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
N
C
N
163
N
C
N
164
N
C
N
165
N
O
N
166
N
O
N
167
N
O
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
N
N
178
N
C
N
179
N
C
N
180
N
O
N
181
N
O
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
N
N
188
S
C
N
189
N
C
N
190
N
O
N
191
N
C
Y
192
N
C
Y
193
N
N
Y
194
N
C
Y
195
N
C
Y
196
N
N
N
197
N
O
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
O
N
209
N
H
N
210
N
H
N
211
N
N
N
212
S
C
N
213
N
C
N
214
N
O
N
215
S
C
N
216
N
C
N
217
N
C
N
218
N
C
N
219
N
O
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
N
N
234
S
C
N
235
N
C
N
236
N
O
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
C
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
N
N
256
S
C
N
257
N
C
N
258
N
O
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
C
N
263
N
N
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
N
285
N
C
N
286
N
S
N
287
N
C
N
288
N
O
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
MG
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
Y
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
N
N
325
S
C
N
326
N
C
N
327
N
O
N
328
N
C
N
329
N
C
N
330
N
C
N
331
N
O
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
N
N
342
S
C
N
343
N
C
N
344
N
O
N
345
N
C
N
346
N
O
N
347
N
O
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
N
N
356
S
C
N
357
N
C
N
358
N
O
N
359
R
C
N
360
N
O
N
361
N
C
N
362
N
O
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
N
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
N
386
N
O
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
N
N
400
S
C
N
401
N
C
N
402
N
O
N
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
N
410
N
O
N
411
N
O
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
N
N
424
S
C
N
425
N
C
N
426
N
O
N
427
N
C
N
428
N
C
N
429
N
C
N
430
N
O
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
1
N
sing
Y
2
N
sing
Y
3
N
doub
Y
4
N
doub
Y
5
N
sing
N
6
N
sing
Y
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
Y
11
N
sing
N
12
N
sing
N
13
N
sing
Y
14
N
sing
Y
15
N
doub
Y
16
N
doub
Y
17
N
sing
Y
18
N
doub
N
19
N
sing
Y
20
N
sing
N
21
N
sing
Y
22
N
sing
Y
23
N
doub
Y
24
N
doub
Y
25
N
sing
Y
26
N
doub
Y
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
doub
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
Y
194
N
sing
Y
195
N
doub
Y
196
N
doub
N
197
N
sing
Y
198
N
sing
N
199
N
sing
Y
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
doub
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
doub
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
Y
302
N
doub
Y
303
N
sing
Y
304
N
sing
N
305
N
sing
Y
306
N
doub
N
307
N
sing
Y
308
N
doub
N
309
N
sing
Y
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
doub
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
doub
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
doub
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
Y
371
N
doub
Y
372
N
sing
Y
373
N
sing
N
374
N
sing
Y
375
N
doub
Y
376
N
sing
Y
377
N
sing
N
378
N
sing
Y
379
N
sing
Y
380
N
doub
N
381
N
sing
Y
382
N
doub
N
383
N
sing
Y
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
Y
399
N
doub
Y
400
N
sing
Y
401
N
sing
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
doub
N
406
N
sing
Y
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
doub
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
UK
Bioorg.Med.Chem.Lett.
BMCLE8
1127
0960-894X
18
2776
10.1016/J.BMCL.2008.04.015
18434142
Inhibitors of the Tyrosine Kinase Ephb4. Part 1: Structure-Based Design and Optimization of a Series of 2,4-Bis-Anilinopyrimidines.
2008
UK
Bioorg.Med.Chem.Lett.
BMCLE8
1127
0960-894X
18
5717
10.1016/J.BMCL.2008.09.087
18851911
Inhibitors of the Tyrosine Kinase Ephb4. Part 2: Structure-Based Discovery and Optimisation of 3,5-Bis Substituted Anilinopyrimidines.
2008
10.2210/pdb2vx0/pdb
pdb_00002vx0
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
MIRRORS
CCD
2005-11-22
RIGAKU-MSC
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU MICROMAX-007
33934.816
EPHRIN TYPE-B RECEPTOR 4
2.7.10.1
KINASE DOMAIN, RESIDUES 598-899
YES
1
man
polymer
425.868
N'-(5-CHLORO-1,3-BENZODIOXOL-4-YL)-N-(3-MORPHOLIN-4-YLPHENYL)PYRIMIDINE-2,4-DIAMINE
1
syn
non-polymer
24.305
MAGNESIUM ION
3
syn
non-polymer
18.015
water
205
nat
water
TYROSINE-PROTEIN KINASE RECEPTOR HTK, TYROSINE-PROTEIN KINASE TYRO11, EPHB4 RECEPTOR TYROSINE KINASE
no
no
DPNEAVREFAKEIDVSYVKIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHPNII
RLEGVVTNSMPVMILTEFMENGALDSFLRLNDGQFTVIQLVGMLRGIASGMRYLAEMSYVHRDLAARNILVNSNLVCKVS
DFGLSRFLEENSSDPTETSSLGGKIPIRWTAPEAIAFRKFTSASDAWSYGIVMWEVMSFGERPYWDMSNQDVINAIEQDY
RLPPPPDCPTSLHQLMLDCWQKDRNARPRFPQVVSALDKMIRNPASLKIVARENGGASHPLL
DPNEAVREFAKEIDVSYVKIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHPNII
RLEGVVTNSMPVMILTEFMENGALDSFLRLNDGQFTVIQLVGMLRGIASGMRYLAEMSYVHRDLAARNILVNSNLVCKVS
DFGLSRFLEENSSDPTETSSLGGKIPIRWTAPEAIAFRKFTSASDAWSYGIVMWEVMSFGERPYWDMSNQDVINAIEQDY
RLPPPPDCPTSLHQLMLDCWQKDRNARPRFPQVVSALDKMIRNPASLKIVARENGGASHPLL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
9606
HOMO SAPIENS
Sf21
7108
SPODOPTERA FRUGIPERDA
BACULOVIRUS
PFASTBAC
1
2.14
42.08
NONE
VAPOR DIFFUSION, SITTING DROP
7.5
PROTEIN: 12MG/ML IN 50MM MOPS PH 6.5, 50MM NACL, 1MM DTT RESERVOIR: 25% PEG 5000 MME, 0.1M TRIS PH 7.5, 0.15M MGCL2, 15% GLYCEROL TEMP: 18 DEGREES C SITTING DROP: 2 UL PROTEIN, 0.6 UL RESERVOIR
291
diffrn_source
entity_src_gen
database_PDB_rev
database_PDB_rev_record
exptl_crystal_grow
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Data collection
Source and taxonomy
Data collection
Experimental preparation
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2008-10-28
1
1
2011-05-08
1
2
2011-07-13
1
3
2017-06-28
1
4
2019-04-24
1
5
2019-05-08
1
6
2023-12-13
_diffrn_source.type
_entity_src_gen.pdbx_host_org_cell_line
_exptl_crystal_grow.method
_exptl_crystal_grow.temp
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
CRYSTAL STRUCTURE AND THERMODYNAMIC CHARACTERIZATION OF THEEPHB4 RECEPTOR IN COMPLEX WITH AN EPHRIN-B2 ANTAGONISTPEPTIDE REVEALS THE DETERMINANTS FOR RECEPTOR SPECIFICITY
EPHB4 KINASE DOMAIN INHIBITOR COMPLEX
EPHB4 KINASE DOMAIN INHIBITOR COMPLEX
EPHB4 KINASE DOMAIN INHIBITOR COMPLEX
EPHB4 KINASE DOMAIN INHIBITOR COMPLEX
EPHB4 KINASE DOMAIN INHIBITOR COMPLEX
EPHB4 KINASE DOMAIN INHIBITOR COMPLEX
EPHB4 KINASE DOMAIN INHIBITOR COMPLEX
PDBE
Y
PDBE
2008-06-30
REL
REL
7X7
N'-(5-CHLORO-1,3-BENZODIOXOL-4-YL)-N-(3-MORPHOLIN-4-YLPHENYL)PYRIMIDINE-2,4-DIAMINE
MG
MAGNESIUM ION
HOH
water
ENGINEERED RESIDUE IN CHAIN A, TYR 774 TO GLU
Y774E MUTATION NOT SEEN IN ELECTRON DENSITY
2VWU
PDB ENTRY 2VWU
PDB
experimental model
7X7
1889
2
7X7
7X7
1889
A
MG
1890
3
MG
MG
1890
A
MG
1891
3
MG
MG
1891
A
MG
1892
3
MG
MG
1892
A
HOH
2001
4
HOH
HOH
2001
A
HOH
2002
4
HOH
HOH
2002
A
HOH
2003
4
HOH
HOH
2003
A
HOH
2004
4
HOH
HOH
2004
A
HOH
2005
4
HOH
HOH
2005
A
HOH
2006
4
HOH
HOH
2006
A
HOH
2007
4
HOH
HOH
2007
A
HOH
2008
4
HOH
HOH
2008
A
HOH
2009
4
HOH
HOH
2009
A
HOH
2010
4
HOH
HOH
2010
A
HOH
2011
4
HOH
HOH
2011
A
HOH
2012
4
HOH
HOH
2012
A
HOH
2013
4
HOH
HOH
2013
A
HOH
2014
4
HOH
HOH
2014
A
HOH
2015
4
HOH
HOH
2015
A
HOH
2016
4
HOH
HOH
2016
A
HOH
2017
4
HOH
HOH
2017
A
HOH
2018
4
HOH
HOH
2018
A
HOH
2019
4
HOH
HOH
2019
A
HOH
2020
4
HOH
HOH
2020
A
HOH
2021
4
HOH
HOH
2021
A
HOH
2022
4
HOH
HOH
2022
A
HOH
2023
4
HOH
HOH
2023
A
HOH
2024
4
HOH
HOH
2024
A
HOH
2025
4
HOH
HOH
2025
A
HOH
2026
4
HOH
HOH
2026
A
HOH
2027
4
HOH
HOH
2027
A
HOH
2028
4
HOH
HOH
2028
A
HOH
2029
4
HOH
HOH
2029
A
HOH
2030
4
HOH
HOH
2030
A
HOH
2031
4
HOH
HOH
2031
A
HOH
2032
4
HOH
HOH
2032
A
HOH
2033
4
HOH
HOH
2033
A
HOH
2034
4
HOH
HOH
2034
A
HOH
2035
4
HOH
HOH
2035
A
HOH
2036
4
HOH
HOH
2036
A
HOH
2037
4
HOH
HOH
2037
A
HOH
2038
4
HOH
HOH
2038
A
HOH
2039
4
HOH
HOH
2039
A
HOH
2040
4
HOH
HOH
2040
A
HOH
2041
4
HOH
HOH
2041
A
HOH
2042
4
HOH
HOH
2042
A
HOH
2043
4
HOH
HOH
2043
A
HOH
2044
4
HOH
HOH
2044
A
HOH
2045
4
HOH
HOH
2045
A
HOH
2046
4
HOH
HOH
2046
A
HOH
2047
4
HOH
HOH
2047
A
HOH
2048
4
HOH
HOH
2048
A
HOH
2049
4
HOH
HOH
2049
A
HOH
2050
4
HOH
HOH
2050
A
HOH
2051
4
HOH
HOH
2051
A
HOH
2052
4
HOH
HOH
2052
A
HOH
2053
4
HOH
HOH
2053
A
HOH
2054
4
HOH
HOH
2054
A
HOH
2055
4
HOH
HOH
2055
A
HOH
2056
4
HOH
HOH
2056
A
HOH
2057
4
HOH
HOH
2057
A
HOH
2058
4
HOH
HOH
2058
A
HOH
2059
4
HOH
HOH
2059
A
HOH
2060
4
HOH
HOH
2060
A
HOH
2061
4
HOH
HOH
2061
A
HOH
2062
4
HOH
HOH
2062
A
HOH
2063
4
HOH
HOH
2063
A
HOH
2064
4
HOH
HOH
2064
A
HOH
2065
4
HOH
HOH
2065
A
HOH
2066
4
HOH
HOH
2066
A
HOH
2067
4
HOH
HOH
2067
A
HOH
2068
4
HOH
HOH
2068
A
HOH
2069
4
HOH
HOH
2069
A
HOH
2070
4
HOH
HOH
2070
A
HOH
2071
4
HOH
HOH
2071
A
HOH
2072
4
HOH
HOH
2072
A
HOH
2073
4
HOH
HOH
2073
A
HOH
2074
4
HOH
HOH
2074
A
HOH
2075
4
HOH
HOH
2075
A
HOH
2076
4
HOH
HOH
2076
A
HOH
2077
4
HOH
HOH
2077
A
HOH
2078
4
HOH
HOH
2078
A
HOH
2079
4
HOH
HOH
2079
A
HOH
2080
4
HOH
HOH
2080
A
HOH
2081
4
HOH
HOH
2081
A
HOH
2082
4
HOH
HOH
2082
A
HOH
2083
4
HOH
HOH
2083
A
HOH
2084
4
HOH
HOH
2084
A
HOH
2085
4
HOH
HOH
2085
A
HOH
2086
4
HOH
HOH
2086
A
HOH
2087
4
HOH
HOH
2087
A
HOH
2088
4
HOH
HOH
2088
A
HOH
2089
4
HOH
HOH
2089
A
HOH
2090
4
HOH
HOH
2090
A
HOH
2091
4
HOH
HOH
2091
A
HOH
2092
4
HOH
HOH
2092
A
HOH
2093
4
HOH
HOH
2093
A
HOH
2094
4
HOH
HOH
2094
A
HOH
2095
4
HOH
HOH
2095
A
HOH
2096
4
HOH
HOH
2096
A
HOH
2097
4
HOH
HOH
2097
A
HOH
2098
4
HOH
HOH
2098
A
HOH
2099
4
HOH
HOH
2099
A
HOH
2100
4
HOH
HOH
2100
A
HOH
2101
4
HOH
HOH
2101
A
HOH
2102
4
HOH
HOH
2102
A
HOH
2103
4
HOH
HOH
2103
A
HOH
2104
4
HOH
HOH
2104
A
HOH
2105
4
HOH
HOH
2105
A
HOH
2106
4
HOH
HOH
2106
A
HOH
2107
4
HOH
HOH
2107
A
HOH
2108
4
HOH
HOH
2108
A
HOH
2109
4
HOH
HOH
2109
A
HOH
2110
4
HOH
HOH
2110
A
HOH
2111
4
HOH
HOH
2111
A
HOH
2112
4
HOH
HOH
2112
A
HOH
2113
4
HOH
HOH
2113
A
HOH
2114
4
HOH
HOH
2114
A
HOH
2115
4
HOH
HOH
2115
A
HOH
2116
4
HOH
HOH
2116
A
HOH
2117
4
HOH
HOH
2117
A
HOH
2118
4
HOH
HOH
2118
A
HOH
2119
4
HOH
HOH
2119
A
HOH
2120
4
HOH
HOH
2120
A
HOH
2121
4
HOH
HOH
2121
A
HOH
2122
4
HOH
HOH
2122
A
HOH
2123
4
HOH
HOH
2123
A
HOH
2124
4
HOH
HOH
2124
A
HOH
2125
4
HOH
HOH
2125
A
HOH
2126
4
HOH
HOH
2126
A
HOH
2127
4
HOH
HOH
2127
A
HOH
2128
4
HOH
HOH
2128
A
HOH
2129
4
HOH
HOH
2129
A
HOH
2130
4
HOH
HOH
2130
A
HOH
2131
4
HOH
HOH
2131
A
HOH
2132
4
HOH
HOH
2132
A
HOH
2133
4
HOH
HOH
2133
A
HOH
2134
4
HOH
HOH
2134
A
HOH
2135
4
HOH
HOH
2135
A
HOH
2136
4
HOH
HOH
2136
A
HOH
2137
4
HOH
HOH
2137
A
HOH
2138
4
HOH
HOH
2138
A
HOH
2139
4
HOH
HOH
2139
A
HOH
2140
4
HOH
HOH
2140
A
HOH
2141
4
HOH
HOH
2141
A
HOH
2142
4
HOH
HOH
2142
A
HOH
2143
4
HOH
HOH
2143
A
HOH
2144
4
HOH
HOH
2144
A
HOH
2145
4
HOH
HOH
2145
A
HOH
2146
4
HOH
HOH
2146
A
HOH
2147
4
HOH
HOH
2147
A
HOH
2148
4
HOH
HOH
2148
A
HOH
2149
4
HOH
HOH
2149
A
HOH
2150
4
HOH
HOH
2150
A
HOH
2151
4
HOH
HOH
2151
A
HOH
2152
4
HOH
HOH
2152
A
HOH
2153
4
HOH
HOH
2153
A
HOH
2154
4
HOH
HOH
2154
A
HOH
2155
4
HOH
HOH
2155
A
HOH
2156
4
HOH
HOH
2156
A
HOH
2157
4
HOH
HOH
2157
A
HOH
2158
4
HOH
HOH
2158
A
HOH
2159
4
HOH
HOH
2159
A
HOH
2160
4
HOH
HOH
2160
A
HOH
2161
4
HOH
HOH
2161
A
HOH
2162
4
HOH
HOH
2162
A
HOH
2163
4
HOH
HOH
2163
A
HOH
2164
4
HOH
HOH
2164
A
HOH
2165
4
HOH
HOH
2165
A
HOH
2166
4
HOH
HOH
2166
A
HOH
2167
4
HOH
HOH
2167
A
HOH
2168
4
HOH
HOH
2168
A
HOH
2169
4
HOH
HOH
2169
A
HOH
2170
4
HOH
HOH
2170
A
HOH
2171
4
HOH
HOH
2171
A
HOH
2172
4
HOH
HOH
2172
A
HOH
2173
4
HOH
HOH
2173
A
HOH
2174
4
HOH
HOH
2174
A
HOH
2175
4
HOH
HOH
2175
A
HOH
2176
4
HOH
HOH
2176
A
HOH
2177
4
HOH
HOH
2177
A
HOH
2178
4
HOH
HOH
2178
A
HOH
2179
4
HOH
HOH
2179
A
HOH
2180
4
HOH
HOH
2180
A
HOH
2181
4
HOH
HOH
2181
A
HOH
2182
4
HOH
HOH
2182
A
HOH
2183
4
HOH
HOH
2183
A
HOH
2184
4
HOH
HOH
2184
A
HOH
2185
4
HOH
HOH
2185
A
HOH
2186
4
HOH
HOH
2186
A
HOH
2187
4
HOH
HOH
2187
A
HOH
2188
4
HOH
HOH
2188
A
HOH
2189
4
HOH
HOH
2189
A
HOH
2190
4
HOH
HOH
2190
A
HOH
2191
4
HOH
HOH
2191
A
HOH
2192
4
HOH
HOH
2192
A
HOH
2193
4
HOH
HOH
2193
A
HOH
2194
4
HOH
HOH
2194
A
HOH
2195
4
HOH
HOH
2195
A
HOH
2196
4
HOH
HOH
2196
A
HOH
2197
4
HOH
HOH
2197
A
HOH
2198
4
HOH
HOH
2198
A
HOH
2199
4
HOH
HOH
2199
A
HOH
2200
4
HOH
HOH
2200
A
HOH
2201
4
HOH
HOH
2201
A
HOH
2202
4
HOH
HOH
2202
A
HOH
2203
4
HOH
HOH
2203
A
HOH
2204
4
HOH
HOH
2204
A
HOH
2205
4
HOH
HOH
2205
A
n
1
598
A
n
2
599
A
n
3
600
A
n
4
601
A
n
5
602
A
n
6
603
A
n
7
604
A
n
8
605
A
n
9
606
A
n
10
607
A
LYS
608
n
11
LYS
608
A
GLU
609
n
12
GLU
609
A
ILE
610
n
13
ILE
610
A
ASP
611
n
14
ASP
611
A
VAL
612
n
15
VAL
612
A
SER
613
n
16
SER
613
A
TYR
614
n
17
TYR
614
A
VAL
615
n
18
VAL
615
A
LYS
616
n
19
LYS
616
A
ILE
617
n
20
ILE
617
A
GLU
618
n
21
GLU
618
A
GLU
619
n
22
GLU
619
A
VAL
620
n
23
VAL
620
A
ILE
621
n
24
ILE
621
A
GLY
622
n
25
GLY
622
A
ALA
623
n
26
ALA
623
A
GLY
624
n
27
GLY
624
A
GLU
625
n
28
GLU
625
A
PHE
626
n
29
PHE
626
A
GLY
627
n
30
GLY
627
A
GLU
628
n
31
GLU
628
A
VAL
629
n
32
VAL
629
A
CYS
630
n
33
CYS
630
A
ARG
631
n
34
ARG
631
A
GLY
632
n
35
GLY
632
A
ARG
633
n
36
ARG
633
A
LEU
634
n
37
LEU
634
A
LYS
635
n
38
LYS
635
A
ALA
636
n
39
ALA
636
A
PRO
637
n
40
PRO
637
A
GLY
638
n
41
GLY
638
A
LYS
639
n
42
LYS
639
A
LYS
640
n
43
LYS
640
A
GLU
641
n
44
GLU
641
A
SER
642
n
45
SER
642
A
CYS
643
n
46
CYS
643
A
VAL
644
n
47
VAL
644
A
ALA
645
n
48
ALA
645
A
ILE
646
n
49
ILE
646
A
LYS
647
n
50
LYS
647
A
THR
648
n
51
THR
648
A
LEU
649
n
52
LEU
649
A
LYS
650
n
53
LYS
650
A
GLY
651
n
54
GLY
651
A
GLY
652
n
55
GLY
652
A
TYR
653
n
56
TYR
653
A
THR
654
n
57
THR
654
A
GLU
655
n
58
GLU
655
A
ARG
656
n
59
ARG
656
A
GLN
657
n
60
GLN
657
A
ARG
658
n
61
ARG
658
A
ARG
659
n
62
ARG
659
A
GLU
660
n
63
GLU
660
A
PHE
661
n
64
PHE
661
A
LEU
662
n
65
LEU
662
A
SER
663
n
66
SER
663
A
GLU
664
n
67
GLU
664
A
ALA
665
n
68
ALA
665
A
SER
666
n
69
SER
666
A
ILE
667
n
70
ILE
667
A
MET
668
n
71
MET
668
A
GLY
669
n
72
GLY
669
A
GLN
670
n
73
GLN
670
A
PHE
671
n
74
PHE
671
A
GLU
672
n
75
GLU
672
A
HIS
673
n
76
HIS
673
A
PRO
674
n
77
PRO
674
A
ASN
675
n
78
ASN
675
A
ILE
676
n
79
ILE
676
A
ILE
677
n
80
ILE
677
A
ARG
678
n
81
ARG
678
A
LEU
679
n
82
LEU
679
A
GLU
680
n
83
GLU
680
A
GLY
681
n
84
GLY
681
A
VAL
682
n
85
VAL
682
A
VAL
683
n
86
VAL
683
A
THR
684
n
87
THR
684
A
ASN
685
n
88
ASN
685
A
SER
686
n
89
SER
686
A
MET
687
n
90
MET
687
A
PRO
688
n
91
PRO
688
A
VAL
689
n
92
VAL
689
A
MET
690
n
93
MET
690
A
ILE
691
n
94
ILE
691
A
LEU
692
n
95
LEU
692
A
THR
693
n
96
THR
693
A
GLU
694
n
97
GLU
694
A
PHE
695
n
98
PHE
695
A
MET
696
n
99
MET
696
A
GLU
697
n
100
GLU
697
A
ASN
698
n
101
ASN
698
A
GLY
699
n
102
GLY
699
A
ALA
700
n
103
ALA
700
A
LEU
701
n
104
LEU
701
A
ASP
702
n
105
ASP
702
A
SER
703
n
106
SER
703
A
PHE
704
n
107
PHE
704
A
LEU
705
n
108
LEU
705
A
ARG
706
n
109
ARG
706
A
LEU
707
n
110
LEU
707
A
ASN
708
n
111
ASN
708
A
ASP
709
n
112
ASP
709
A
GLY
710
n
113
GLY
710
A
GLN
711
n
114
GLN
711
A
PHE
712
n
115
PHE
712
A
THR
713
n
116
THR
713
A
VAL
714
n
117
VAL
714
A
ILE
715
n
118
ILE
715
A
GLN
716
n
119
GLN
716
A
LEU
717
n
120
LEU
717
A
VAL
718
n
121
VAL
718
A
GLY
719
n
122
GLY
719
A
MET
720
n
123
MET
720
A
LEU
721
n
124
LEU
721
A
ARG
722
n
125
ARG
722
A
GLY
723
n
126
GLY
723
A
ILE
724
n
127
ILE
724
A
ALA
725
n
128
ALA
725
A
SER
726
n
129
SER
726
A
GLY
727
n
130
GLY
727
A
MET
728
n
131
MET
728
A
ARG
729
n
132
ARG
729
A
TYR
730
n
133
TYR
730
A
LEU
731
n
134
LEU
731
A
ALA
732
n
135
ALA
732
A
GLU
733
n
136
GLU
733
A
MET
734
n
137
MET
734
A
SER
735
n
138
SER
735
A
TYR
736
n
139
TYR
736
A
VAL
737
n
140
VAL
737
A
HIS
738
n
141
HIS
738
A
ARG
739
n
142
ARG
739
A
ASP
740
n
143
ASP
740
A
LEU
741
n
144
LEU
741
A
ALA
742
n
145
ALA
742
A
ALA
743
n
146
ALA
743
A
ARG
744
n
147
ARG
744
A
ASN
745
n
148
ASN
745
A
ILE
746
n
149
ILE
746
A
LEU
747
n
150
LEU
747
A
VAL
748
n
151
VAL
748
A
ASN
749
n
152
ASN
749
A
SER
750
n
153
SER
750
A
ASN
751
n
154
ASN
751
A
LEU
752
n
155
LEU
752
A
VAL
753
n
156
VAL
753
A
CYS
754
n
157
CYS
754
A
LYS
755
n
158
LYS
755
A
VAL
756
n
159
VAL
756
A
SER
757
n
160
SER
757
A
ASP
758
n
161
ASP
758
A
PHE
759
n
162
PHE
759
A
GLY
760
n
163
GLY
760
A
LEU
761
n
164
LEU
761
A
SER
762
n
165
SER
762
A
ARG
763
n
166
ARG
763
A
PHE
764
n
167
PHE
764
A
LEU
765
n
168
LEU
765
A
GLU
766
n
169
GLU
766
A
GLU
767
n
170
GLU
767
A
ASN
768
n
171
ASN
768
A
SER
769
n
172
SER
769
A
SER
770
n
173
SER
770
A
ASP
771
n
174
ASP
771
A
n
175
772
A
n
176
773
A
n
177
774
A
n
178
775
A
n
179
776
A
n
180
777
A
n
181
778
A
n
182
779
A
GLY
780
n
183
GLY
780
A
LYS
781
n
184
LYS
781
A
ILE
782
n
185
ILE
782
A
PRO
783
n
186
PRO
783
A
ILE
784
n
187
ILE
784
A
ARG
785
n
188
ARG
785
A
TRP
786
n
189
TRP
786
A
THR
787
n
190
THR
787
A
ALA
788
n
191
ALA
788
A
PRO
789
n
192
PRO
789
A
GLU
790
n
193
GLU
790
A
ALA
791
n
194
ALA
791
A
ILE
792
n
195
ILE
792
A
ALA
793
n
196
ALA
793
A
PHE
794
n
197
PHE
794
A
ARG
795
n
198
ARG
795
A
LYS
796
n
199
LYS
796
A
PHE
797
n
200
PHE
797
A
THR
798
n
201
THR
798
A
SER
799
n
202
SER
799
A
ALA
800
n
203
ALA
800
A
SER
801
n
204
SER
801
A
ASP
802
n
205
ASP
802
A
ALA
803
n
206
ALA
803
A
TRP
804
n
207
TRP
804
A
SER
805
n
208
SER
805
A
TYR
806
n
209
TYR
806
A
GLY
807
n
210
GLY
807
A
ILE
808
n
211
ILE
808
A
VAL
809
n
212
VAL
809
A
MET
810
n
213
MET
810
A
TRP
811
n
214
TRP
811
A
GLU
812
n
215
GLU
812
A
VAL
813
n
216
VAL
813
A
MET
814
n
217
MET
814
A
SER
815
n
218
SER
815
A
PHE
816
n
219
PHE
816
A
GLY
817
n
220
GLY
817
A
GLU
818
n
221
GLU
818
A
ARG
819
n
222
ARG
819
A
PRO
820
n
223
PRO
820
A
TYR
821
n
224
TYR
821
A
TRP
822
n
225
TRP
822
A
ASP
823
n
226
ASP
823
A
MET
824
n
227
MET
824
A
SER
825
n
228
SER
825
A
ASN
826
n
229
ASN
826
A
GLN
827
n
230
GLN
827
A
ASP
828
n
231
ASP
828
A
VAL
829
n
232
VAL
829
A
ILE
830
n
233
ILE
830
A
ASN
831
n
234
ASN
831
A
ALA
832
n
235
ALA
832
A
ILE
833
n
236
ILE
833
A
GLU
834
n
237
GLU
834
A
GLN
835
n
238
GLN
835
A
ASP
836
n
239
ASP
836
A
TYR
837
n
240
TYR
837
A
ARG
838
n
241
ARG
838
A
LEU
839
n
242
LEU
839
A
PRO
840
n
243
PRO
840
A
PRO
841
n
244
PRO
841
A
PRO
842
n
245
PRO
842
A
PRO
843
n
246
PRO
843
A
ASP
844
n
247
ASP
844
A
CYS
845
n
248
CYS
845
A
PRO
846
n
249
PRO
846
A
THR
847
n
250
THR
847
A
SER
848
n
251
SER
848
A
LEU
849
n
252
LEU
849
A
HIS
850
n
253
HIS
850
A
GLN
851
n
254
GLN
851
A
LEU
852
n
255
LEU
852
A
MET
853
n
256
MET
853
A
LEU
854
n
257
LEU
854
A
ASP
855
n
258
ASP
855
A
CYS
856
n
259
CYS
856
A
TRP
857
n
260
TRP
857
A
GLN
858
n
261
GLN
858
A
LYS
859
n
262
LYS
859
A
ASP
860
n
263
ASP
860
A
ARG
861
n
264
ARG
861
A
ASN
862
n
265
ASN
862
A
ALA
863
n
266
ALA
863
A
ARG
864
n
267
ARG
864
A
PRO
865
n
268
PRO
865
A
ARG
866
n
269
ARG
866
A
PHE
867
n
270
PHE
867
A
PRO
868
n
271
PRO
868
A
GLN
869
n
272
GLN
869
A
VAL
870
n
273
VAL
870
A
VAL
871
n
274
VAL
871
A
SER
872
n
275
SER
872
A
ALA
873
n
276
ALA
873
A
LEU
874
n
277
LEU
874
A
ASP
875
n
278
ASP
875
A
LYS
876
n
279
LYS
876
A
MET
877
n
280
MET
877
A
ILE
878
n
281
ILE
878
A
ARG
879
n
282
ARG
879
A
ASN
880
n
283
ASN
880
A
PRO
881
n
284
PRO
881
A
ALA
882
n
285
ALA
882
A
SER
883
n
286
SER
883
A
LEU
884
n
287
LEU
884
A
LYS
885
n
288
LYS
885
A
ILE
886
n
289
ILE
886
A
VAL
887
n
290
VAL
887
A
ALA
888
n
291
ALA
888
A
n
292
889
A
n
293
890
A
n
294
891
A
n
295
892
A
n
296
893
A
n
297
894
A
n
298
895
A
n
299
896
A
n
300
897
A
n
301
898
A
n
302
899
A
author_and_software_defined_assembly
PISA
1
monomeric
A
ASP
740
A
OD2
ASP
143
1_555
A
MG
1890
C
MG
MG
1_555
A
ASP
758
A
OD1
ASP
161
1_555
91.7
A
ASP
740
A
OD2
ASP
143
1_555
A
MG
1890
C
MG
MG
1_555
A
HOH
2097
F
O
HOH
1_555
85.4
A
ASP
758
A
OD1
ASP
161
1_555
A
MG
1890
C
MG
MG
1_555
A
HOH
2097
F
O
HOH
1_555
89.0
A
ASP
740
A
OD2
ASP
143
1_555
A
MG
1890
C
MG
MG
1_555
A
HOH
2099
F
O
HOH
1_555
87.1
A
ASP
758
A
OD1
ASP
161
1_555
A
MG
1890
C
MG
MG
1_555
A
HOH
2099
F
O
HOH
1_555
177.9
A
HOH
2097
F
O
HOH
1_555
A
MG
1890
C
MG
MG
1_555
A
HOH
2099
F
O
HOH
1_555
92.6
A
ASP
740
A
OD2
ASP
143
1_555
A
MG
1890
C
MG
MG
1_555
A
HOH
2110
F
O
HOH
1_555
172.5
A
ASP
758
A
OD1
ASP
161
1_555
A
MG
1890
C
MG
MG
1_555
A
HOH
2110
F
O
HOH
1_555
88.0
A
HOH
2097
F
O
HOH
1_555
A
MG
1890
C
MG
MG
1_555
A
HOH
2110
F
O
HOH
1_555
87.1
A
HOH
2099
F
O
HOH
1_555
A
MG
1890
C
MG
MG
1_555
A
HOH
2110
F
O
HOH
1_555
93.4
A
ASP
740
A
OD2
ASP
143
1_555
A
MG
1890
C
MG
MG
1_555
A
HOH
2111
F
O
HOH
1_555
98.7
A
ASP
758
A
OD1
ASP
161
1_555
A
MG
1890
C
MG
MG
1_555
A
HOH
2111
F
O
HOH
1_555
98.9
A
HOH
2097
F
O
HOH
1_555
A
MG
1890
C
MG
MG
1_555
A
HOH
2111
F
O
HOH
1_555
171.0
A
HOH
2099
F
O
HOH
1_555
A
MG
1890
C
MG
MG
1_555
A
HOH
2111
F
O
HOH
1_555
79.7
A
HOH
2110
F
O
HOH
1_555
A
MG
1890
C
MG
MG
1_555
A
HOH
2111
F
O
HOH
1_555
88.7
A
HOH
2094
F
O
HOH
1_555
A
MG
1891
D
MG
MG
1_555
A
HOH
2111
F
O
HOH
1_555
103.1
A
HOH
2072
F
O
HOH
1_555
A
MG
1892
E
MG
MG
1_555
A
HOH
2073
F
O
HOH
1_555
66.3
A
HOH
2072
F
O
HOH
1_555
A
MG
1892
E
MG
MG
1_555
A
HOH
2142
F
O
HOH
1_555
142.7
A
HOH
2073
F
O
HOH
1_555
A
MG
1892
E
MG
MG
1_555
A
HOH
2142
F
O
HOH
1_555
78.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
621
A
N
ILE
24
A
O
VAL
629
A
O
VAL
32
A
N
LEU
634
A
N
LEU
37
A
O
SER
642
A
O
SER
45
A
N
LEU
649
A
N
LEU
52
A
O
VAL
689
A
O
VAL
92
A
O
LEU
692
A
O
LEU
95
A
N
GLU
680
A
N
GLU
83
A
N
LEU
747
A
N
LEU
150
A
O
LYS
755
A
O
LYS
158
1
A
CD
LYS
616
A
CD
LYS
19
1
Y
1
A
CE
LYS
616
A
CE
LYS
19
1
Y
1
A
NZ
LYS
616
A
NZ
LYS
19
1
Y
1
A
CZ
ARG
633
A
CZ
ARG
36
1
Y
1
A
NH1
ARG
633
A
NH1
ARG
36
1
Y
1
A
NH2
ARG
633
A
NH2
ARG
36
1
Y
1
A
CD
LYS
639
A
CD
LYS
42
1
Y
1
A
CE
LYS
639
A
CE
LYS
42
1
Y
1
A
NZ
LYS
639
A
NZ
LYS
42
1
Y
1
A
CD
LYS
640
A
CD
LYS
43
1
Y
1
A
CE
LYS
640
A
CE
LYS
43
1
Y
1
A
NZ
LYS
640
A
NZ
LYS
43
1
Y
1
A
CD
ARG
656
A
CD
ARG
59
1
Y
1
A
NE
ARG
656
A
NE
ARG
59
1
Y
1
A
CZ
ARG
656
A
CZ
ARG
59
1
Y
1
A
NH1
ARG
656
A
NH1
ARG
59
1
Y
1
A
NH2
ARG
656
A
NH2
ARG
59
1
Y
1
A
CG
ARG
659
A
CG
ARG
62
1
Y
1
A
CD
ARG
659
A
CD
ARG
62
1
Y
1
A
NE
ARG
659
A
NE
ARG
62
1
Y
1
A
CZ
ARG
659
A
CZ
ARG
62
1
Y
1
A
NH1
ARG
659
A
NH1
ARG
62
1
Y
1
A
NH2
ARG
659
A
NH2
ARG
62
1
Y
1
A
CG
GLU
660
A
CG
GLU
63
1
Y
1
A
CD
GLU
660
A
CD
GLU
63
1
Y
1
A
OE1
GLU
660
A
OE1
GLU
63
1
Y
1
A
OE2
GLU
660
A
OE2
GLU
63
1
Y
1
A
CG
LEU
765
A
CG
LEU
168
1
Y
1
A
CD1
LEU
765
A
CD1
LEU
168
1
Y
1
A
CD2
LEU
765
A
CD2
LEU
168
1
Y
1
A
CD
LYS
781
A
CD
LYS
184
1
Y
1
A
CE
LYS
781
A
CE
LYS
184
1
Y
1
A
NZ
LYS
781
A
NZ
LYS
184
1
Y
1
A
NE
ARG
795
A
NE
ARG
198
1
Y
1
A
CZ
ARG
795
A
CZ
ARG
198
1
Y
1
A
NH1
ARG
795
A
NH1
ARG
198
1
Y
1
A
NH2
ARG
795
A
NH2
ARG
198
1
Y
1
A
CG
LYS
796
A
CG
LYS
199
1
Y
1
A
CD
LYS
796
A
CD
LYS
199
1
Y
1
A
CE
LYS
796
A
CE
LYS
199
1
Y
1
A
NZ
LYS
796
A
NZ
LYS
199
1
Y
1
A
CG
LYS
859
A
CG
LYS
262
1
Y
1
A
CD
LYS
859
A
CD
LYS
262
1
Y
1
A
CE
LYS
859
A
CE
LYS
262
1
Y
1
A
NZ
LYS
859
A
NZ
LYS
262
1
Y
1
A
CZ
ARG
866
A
CZ
ARG
269
1
Y
1
A
NH1
ARG
866
A
NH1
ARG
269
1
Y
1
A
NH2
ARG
866
A
NH2
ARG
269
1
Y
1
A
CD
LYS
876
A
CD
LYS
279
1
Y
1
A
CE
LYS
876
A
CE
LYS
279
1
Y
1
A
NZ
LYS
876
A
NZ
LYS
279
1
Y
1
A
CD
LYS
885
A
CD
LYS
288
1
Y
1
A
CE
LYS
885
A
CE
LYS
288
1
Y
1
A
NZ
LYS
885
A
NZ
LYS
288
1
Y
1
A
ASP
598
A
ASP
1
1
Y
1
A
PRO
599
A
PRO
2
1
Y
1
A
ASN
600
A
ASN
3
1
Y
1
A
GLU
601
A
GLU
4
1
Y
1
A
ALA
602
A
ALA
5
1
Y
1
A
VAL
603
A
VAL
6
1
Y
1
A
ARG
604
A
ARG
7
1
Y
1
A
GLU
605
A
GLU
8
1
Y
1
A
PHE
606
A
PHE
9
1
Y
1
A
ALA
607
A
ALA
10
1
Y
1
A
PRO
772
A
PRO
175
1
Y
1
A
THR
773
A
THR
176
1
Y
1
A
GLU
774
A
GLU
177
1
Y
1
A
THR
775
A
THR
178
1
Y
1
A
SER
776
A
SER
179
1
Y
1
A
SER
777
A
SER
180
1
Y
1
A
LEU
778
A
LEU
181
1
Y
1
A
GLY
779
A
GLY
182
1
Y
1
A
ARG
889
A
ARG
292
1
Y
1
A
GLU
890
A
GLU
293
1
Y
1
A
ASN
891
A
ASN
294
1
Y
1
A
GLY
892
A
GLY
295
1
Y
1
A
GLY
893
A
GLY
296
1
Y
1
A
ALA
894
A
ALA
297
1
Y
1
A
SER
895
A
SER
298
1
Y
1
A
HIS
896
A
HIS
299
1
Y
1
A
PRO
897
A
PRO
300
1
Y
1
A
LEU
898
A
LEU
301
1
Y
1
A
LEU
899
A
LEU
302
1
Y
1
A
A
SG
O
CYS
HOH
643
2032
2.14
B
1
A
A
O
O
HOH
HOH
2077
2091
2.08
1_555
2_655
1
A
ARG
739
78.58
-18.57
1
A
ASP
758
80.11
86.54
1
A
SER
769
-30.09
117.05
1
A
SER
770
-8.76
-59.38
1
A
TRP
822
41.65
-115.67
22.306
0.35
0.00
-0.58
-1.07
0.00
0.31
0.945
0.926
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
0.23286
0.18436
0.18681
2.10
57.26
831
15595
5.1
99.95
9.895
0.122
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.251
0.196
0.80
0.80
1.20
PDB ENTRY 2VWU
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
2.10
57.26
205
2347
33
0
2109
0.013
0.022
2252
0.001
0.020
2048
1.461
1.978
3044
0.819
3.000
4760
5.953
5.000
275
35.595
23.495
103
13.485
15.000
398
15.006
15.000
20
0.088
0.200
326
0.006
0.020
2527
0.001
0.020
458
0.218
0.200
481
0.177
0.200
2107
0.189
0.200
1110
0.081
0.200
1275
0.183
0.200
164
0.115
0.200
5
0.246
0.200
42
0.237
0.200
19
0.872
1.500
1499
1.258
2.000
2206
1.863
3.000
994
2.785
4.500
836
0.273
0.179
2.155
74
1132
20
2.10
100.00
2VX0
16426
2.0
0.13
1
5.60
3.66
100.0
0.31
2.10
2.18
2.80
1
3.6
100.0
refinement
REFMAC
5.2.0005
data reduction
CrystalClear
data scaling
CrystalClear
phasing
AMoRE
ephB4 kinase domain inhibitor complex
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
A
ASP
611
A
ASP
14
HELX_P
A
SER
613
A
SER
16
5
1
3
A
THR
654
A
THR
57
HELX_P
A
GLY
669
A
GLY
72
1
2
16
A
ALA
700
A
ALA
103
HELX_P
A
ASN
708
A
ASN
111
1
3
9
A
THR
713
A
THR
116
HELX_P
A
MET
734
A
MET
137
1
4
22
A
ALA
742
A
ALA
145
HELX_P
A
ARG
744
A
ARG
147
5
5
3
A
PHE
764
A
PHE
167
HELX_P
A
ASN
768
A
ASN
171
5
6
5
A
PRO
783
A
PRO
186
HELX_P
A
THR
787
A
THR
190
5
7
5
A
ALA
788
A
ALA
191
HELX_P
A
ARG
795
A
ARG
198
1
8
8
A
THR
798
A
THR
201
HELX_P
A
SER
815
A
SER
218
1
9
18
A
SER
825
A
SER
228
HELX_P
A
GLN
835
A
GLN
238
1
10
11
A
PRO
846
A
PRO
249
HELX_P
A
TRP
857
A
TRP
260
1
11
12
A
ASP
860
A
ASP
263
HELX_P
A
ARG
864
A
ARG
267
5
12
5
A
ARG
866
A
ARG
269
HELX_P
A
ASN
880
A
ASN
283
1
13
15
A
PRO
881
A
PRO
284
HELX_P
A
ILE
886
A
ILE
289
5
14
6
metalc
2.059
A
ASP
740
A
OD2
ASP
143
1_555
A
MG
1890
C
MG
MG
1_555
metalc
2.034
A
ASP
758
A
OD1
ASP
161
1_555
A
MG
1890
C
MG
MG
1_555
metalc
1.966
A
MG
1890
C
MG
MG
1_555
A
HOH
2097
F
O
HOH
1_555
metalc
2.251
A
MG
1890
C
MG
MG
1_555
A
HOH
2099
F
O
HOH
1_555
metalc
2.163
A
MG
1890
C
MG
MG
1_555
A
HOH
2110
F
O
HOH
1_555
metalc
2.136
A
MG
1890
C
MG
MG
1_555
A
HOH
2111
F
O
HOH
1_555
metalc
1.956
A
MG
1891
D
MG
MG
1_555
A
HOH
2094
F
O
HOH
1_555
metalc
1.486
A
MG
1891
D
MG
MG
1_555
A
HOH
2111
F
O
HOH
1_555
metalc
2.271
A
MG
1892
E
MG
MG
1_555
A
HOH
2072
F
O
HOH
1_555
metalc
2.041
A
MG
1892
E
MG
MG
1_555
A
HOH
2073
F
O
HOH
1_555
metalc
2.157
A
MG
1892
E
MG
MG
1_555
A
HOH
2142
F
O
HOH
1_555
TRANSFERASE
MUTANT, MEMBRANE, TRANSFERASE, ATP-BINDING, POLYMORPHISM, GLYCOPROTEIN, TRANSMEMBRANE, PHOSPHOPROTEIN, UNPHOSPHORYLATED, NUCLEOTIDE-BINDING
A
MET
687
A
MET
90
1
A
PRO
688
A
PRO
91
-3.15
EPHB4_HUMAN
UNP
1
P54760
598
899
2VX0
598
899
P54760
A
1
1
302
1
TYR
engineered mutation
GLU
774
2VX0
A
P54760
UNP
774
177
5
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
615
A
VAL
18
A
ALA
623
A
ALA
26
A
GLU
628
A
GLU
31
A
LEU
634
A
LEU
37
A
SER
642
A
SER
45
A
LEU
649
A
LEU
52
A
VAL
689
A
VAL
92
A
GLU
694
A
GLU
97
A
LEU
679
A
LEU
82
A
VAL
683
A
VAL
86
A
ILE
746
A
ILE
149
A
VAL
748
A
VAL
151
A
CYS
754
A
CYS
157
A
VAL
756
A
VAL
159
BINDING SITE FOR RESIDUE 7X7 A 1889
A
7X7
1889
Software
14
BINDING SITE FOR RESIDUE MG A 1890
A
MG
1890
Software
7
BINDING SITE FOR RESIDUE MG A 1891
A
MG
1891
Software
5
BINDING SITE FOR RESIDUE MG A 1892
A
MG
1892
Software
3
A
ILE
621
A
ILE
24
14
1_555
A
ALA
645
A
ALA
48
14
1_555
A
LYS
647
A
LYS
50
14
1_555
A
GLU
664
A
GLU
67
14
1_555
A
ILE
691
A
ILE
94
14
1_555
A
THR
693
A
THR
96
14
1_555
A
GLU
694
A
GLU
97
14
1_555
A
MET
696
A
MET
99
14
1_555
A
GLU
697
A
GLU
100
14
1_555
A
GLY
699
A
GLY
102
14
1_555
A
LEU
747
A
LEU
150
14
1_555
A
SER
757
A
SER
160
14
1_555
A
HOH
2203
F
HOH
14
1_555
A
HOH
2205
F
HOH
14
1_555
A
ASP
740
A
ASP
143
7
1_555
A
ASP
758
A
ASP
161
7
1_555
A
MG
1891
D
MG
7
1_555
A
HOH
2097
F
HOH
7
1_555
A
HOH
2099
F
HOH
7
1_555
A
HOH
2110
F
HOH
7
1_555
A
HOH
2111
F
HOH
7
1_555
A
ASP
740
A
ASP
143
5
1_555
A
ASP
758
A
ASP
161
5
1_555
A
MG
1890
C
MG
5
1_555
A
HOH
2094
F
HOH
5
1_555
A
HOH
2111
F
HOH
5
1_555
A
HOH
2072
F
HOH
3
1_555
A
HOH
2073
F
HOH
3
1_555
A
HOH
2142
F
HOH
3
1_555
4
P 1 21 1