1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Carbajo, R.J. Sanz, L. Mosulen, S. Calvete, J.J. Pineda-Lucena, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proteins PSFGEY 0867 0887-3585 79 2530 10.1002/PROT.23076 21656569 NMR Structure and Dynamics of Recombinant Wild-Type and Mutated Jerdostatin, a Selective Inhibitor of Integrin Alpha1 Beta1 2011 10.2210/pdb2w9o/pdb pdb_00002w9o 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 4911.605 SHORT DISINTEGRIN JERDOSTATIN RESIDUES 68-110 1 man polymer JERDOSTATIN no no AMDCTTGPCCRQCKLKPAGTTCWRTSVSSHYCTGRSCECPSYPGNG AMDCTTGPCCRQCKLKPAGTTCWRTSVSSHYCTGRSCECPSYPGNG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n JERDON'S PIT-VIPER sample 135726 TRIMERESURUS JERDONII 469008 ESCHERICHIA COLI BL21(DE3) PET-32A pdbx_database_status pdbx_nmr_software pdbx_nmr_spectrometer database_2 pdbx_database_status repository Initial release Database references Version format compliance Data collection Other Database references Other 1 0 2010-03-31 1 1 2011-11-09 1 2 2020-01-15 1 3 2023-06-14 _pdbx_database_status.status_code_cs _pdbx_database_status.status_code_mr _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data SOLUTION STRUCTURE OF JERDOSTATIN MUTANT R24K FROM TRIMERESURUS JERDONII SOLUTION STRUCTURE OF JERDOSTATIN FROM TRIMERESURUS JERDONII WITH END C-TERMINAL RESIDUES N45G46 DELETED SOLUTION STRUCTURE OF JERDOSTATIN MUTANT R24K FROM TRIMERESURUS JERDONII WITH END C- TERMINAL RESIDUES N45G46 DELETED PDBE Y PDBE 2009-01-27 REL REL REL REL FIRST THREE RESIDUES (AMD) NOT PRESENT IN THE SEQUENCE DEPOSITED THE STRUCTURE WAS DETERMINED USING HOMONUCLEAR AND HETERONUCLEAR NMR SPECTROSCOPY ON 15N-LABELLED JERDOSTATIN LOWEST TOTAL ENERGY 50 40 NOESY TOCSY 15N HSQC 13C HSQC 0 4.5 pH 1.0 atm 300.0 K CNS 1 90% H2O / 10% D2O BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE,SIMONSON,WARREN refinement CNS structure solution Sparky 600 Bruker AVANCE ALA 1 n 1 ALA 1 A MET 2 n 2 MET 2 A ASP 3 n 3 ASP 3 A CYS 4 n 4 CYS 4 A THR 5 n 5 THR 5 A THR 6 n 6 THR 6 A GLY 7 n 7 GLY 7 A PRO 8 n 8 PRO 8 A CYS 9 n 9 CYS 9 A CYS 10 n 10 CYS 10 A ARG 11 n 11 ARG 11 A GLN 12 n 12 GLN 12 A CYS 13 n 13 CYS 13 A LYS 14 n 14 LYS 14 A LEU 15 n 15 LEU 15 A LYS 16 n 16 LYS 16 A PRO 17 n 17 PRO 17 A ALA 18 n 18 ALA 18 A GLY 19 n 19 GLY 19 A THR 20 n 20 THR 20 A THR 21 n 21 THR 21 A CYS 22 n 22 CYS 22 A TRP 23 n 23 TRP 23 A ARG 24 n 24 ARG 24 A THR 25 n 25 THR 25 A SER 26 n 26 SER 26 A VAL 27 n 27 VAL 27 A SER 28 n 28 SER 28 A SER 29 n 29 SER 29 A HIS 30 n 30 HIS 30 A TYR 31 n 31 TYR 31 A CYS 32 n 32 CYS 32 A THR 33 n 33 THR 33 A GLY 34 n 34 GLY 34 A ARG 35 n 35 ARG 35 A SER 36 n 36 SER 36 A CYS 37 n 37 CYS 37 A GLU 38 n 38 GLU 38 A CYS 39 n 39 CYS 39 A PRO 40 n 40 PRO 40 A SER 41 n 41 SER 41 A TYR 42 n 42 TYR 42 A PRO 43 n 43 PRO 43 A GLY 44 n 44 GLY 44 A ASN 45 n 45 ASN 45 A GLY 46 n 46 GLY 46 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A ARG 11 -169.00 90.14 1 A GLN 12 60.70 60.69 1 A CYS 22 -102.75 75.50 1 A TRP 23 60.91 80.03 1 A SER 26 -98.76 30.82 1 A SER 28 -176.73 96.73 1 A PRO 40 -52.16 177.39 2 A CYS 4 -177.51 -39.52 2 A THR 5 60.39 109.30 2 A CYS 10 -177.16 122.12 2 A ALA 18 -59.91 90.11 2 A CYS 22 -66.31 93.76 2 A TRP 23 60.61 110.51 2 A VAL 27 -178.50 -38.91 2 A TYR 31 60.28 104.96 2 A TYR 42 -106.98 79.60 2 A PRO 43 -69.95 -167.92 3 A CYS 4 60.64 84.41 3 A ARG 11 -114.39 -166.71 3 A GLN 12 -58.57 88.91 3 A LYS 14 -177.59 111.54 3 A SER 26 -178.14 -39.56 3 A HIS 30 60.63 -176.72 3 A ARG 35 -174.73 -40.47 3 A TYR 42 -160.22 78.97 3 A PRO 43 -70.29 -169.78 3 A ASN 45 -155.72 -57.59 4 A ASP 3 60.63 105.88 4 A CYS 9 179.93 37.42 4 A CYS 10 -171.48 142.53 4 A ARG 11 -60.59 -173.69 4 A CYS 13 -159.66 31.64 4 A CYS 22 -141.29 -47.57 4 A TRP 23 -159.78 80.47 5 A CYS 9 -98.06 37.48 5 A GLN 12 63.90 -79.92 5 A CYS 13 -140.57 31.33 5 A ARG 24 -171.56 124.65 5 A THR 25 -108.05 -77.95 5 A SER 26 -177.58 -39.46 5 A SER 41 -98.20 35.91 5 A ASN 45 -107.32 -62.16 6 A ASP 3 -68.65 -170.11 6 A CYS 4 -176.46 -39.94 6 A THR 5 60.59 107.63 6 A CYS 9 -96.65 32.87 6 A CYS 10 -177.71 140.73 6 A CYS 13 64.50 77.64 6 A LYS 14 -176.95 136.42 6 A ALA 18 -57.42 100.45 6 A ARG 24 57.59 105.15 6 A VAL 27 -178.69 -38.48 6 A SER 28 -103.70 -78.31 6 A SER 29 60.02 77.60 6 A ASN 45 60.29 80.53 7 A ASP 3 -144.03 -63.05 7 A GLN 12 61.47 68.98 7 A CYS 13 60.04 68.23 7 A LYS 14 -170.85 106.53 7 A SER 26 75.04 31.20 7 A SER 28 -164.37 -169.87 7 A TYR 31 61.58 153.48 7 A PRO 40 -52.73 177.48 7 A SER 41 -146.06 31.59 7 A TYR 42 -159.78 88.40 7 A PRO 43 -51.49 104.74 8 A MET 2 60.57 170.16 8 A CYS 9 -98.89 31.81 8 A ALA 18 -59.73 92.95 8 A THR 25 -176.65 74.43 8 A VAL 27 -134.91 -44.84 8 A ASN 45 60.46 159.53 9 A CYS 4 60.59 99.70 9 A THR 5 -63.50 82.78 9 A GLN 12 62.63 -80.66 9 A CYS 13 -154.31 31.51 9 A TRP 23 60.68 106.66 9 A THR 25 -142.40 30.89 9 A HIS 30 -170.48 144.36 9 A ARG 35 -159.75 -44.77 10 A MET 2 -105.93 -65.59 10 A CYS 9 -81.81 -74.10 10 A ARG 11 -66.42 -168.75 10 A CYS 13 -160.22 35.62 10 A TRP 23 -176.14 66.97 10 A SER 26 -178.72 -38.79 10 A VAL 27 -150.98 -44.75 10 A TYR 31 63.68 136.79 10 A GLU 38 -55.76 98.09 10 A PRO 40 -52.32 177.40 10 A ASN 45 -128.91 -67.60 11 A CYS 4 60.32 107.26 11 A CYS 9 -97.97 37.01 11 A GLN 12 63.89 -79.91 11 A CYS 13 -148.51 37.48 11 A ALA 18 -59.93 103.37 11 A TRP 23 -163.25 78.00 11 A SER 26 -178.51 -39.77 11 A TYR 31 60.74 157.35 11 A PRO 40 -52.46 172.20 11 A ASN 45 60.69 111.13 12 A CYS 10 179.97 142.32 12 A GLN 12 62.57 -80.63 12 A CYS 13 -165.47 37.55 12 A ALA 18 -58.86 108.35 12 A CYS 22 -60.30 -73.87 12 A VAL 27 -178.61 -38.82 12 A SER 29 -176.56 110.00 12 A TYR 31 61.32 154.92 12 A GLU 38 -58.56 109.53 12 A TYR 42 -164.08 87.55 13 A GLN 12 63.93 -79.85 13 A CYS 13 -156.19 68.92 13 A TRP 23 -157.03 79.63 13 A THR 25 -160.61 -78.23 13 A SER 26 -177.99 -39.52 13 A SER 29 -173.75 36.43 13 A HIS 30 -69.20 -178.03 13 A THR 33 -106.98 -67.35 13 A CYS 39 -58.37 110.00 13 A PRO 40 -52.44 172.80 13 A TYR 42 -159.83 86.61 13 A ASN 45 -99.12 31.55 14 A CYS 9 -98.42 35.69 14 A GLN 12 63.72 -80.03 14 A CYS 13 -147.72 36.38 14 A THR 25 -169.99 -42.13 14 A SER 26 -172.25 -77.96 14 A ARG 35 -156.81 -45.44 14 A ASN 45 -162.50 -74.47 15 A THR 5 -60.39 91.41 15 A ARG 11 -125.03 -74.90 15 A GLN 12 -91.32 55.97 15 A ALA 18 -58.04 101.65 15 A SER 26 -98.73 30.32 15 A SER 41 -162.91 31.46 15 A TYR 42 60.82 157.18 15 A PRO 43 -69.97 97.59 15 A ASN 45 60.53 165.24 16 A CYS 9 -98.80 31.06 16 A ARG 11 -92.22 -83.02 16 A CYS 13 179.94 38.53 16 A CYS 22 -92.24 -66.91 16 A THR 25 -163.69 31.47 16 A VAL 27 -178.70 -38.85 16 A HIS 30 59.96 -176.13 16 A ARG 35 -135.48 -45.91 16 A PRO 40 -50.59 170.93 16 A SER 41 -114.75 70.01 16 A TYR 42 -177.61 -61.85 16 A PRO 43 -65.97 72.95 17 A CYS 4 -177.46 -39.37 17 A THR 5 62.17 117.28 17 A CYS 9 -97.36 39.44 17 A GLN 12 63.94 -79.74 17 A CYS 13 -141.83 31.64 17 A SER 26 -108.77 67.10 17 A VAL 27 -178.42 -38.92 17 A PRO 40 -52.46 174.35 17 A PRO 43 -70.43 -167.93 18 A MET 2 -134.01 -74.55 18 A CYS 9 -94.87 41.26 18 A CYS 10 -179.44 124.83 18 A TRP 23 -168.58 99.89 18 A THR 25 -162.78 -77.89 18 A SER 26 -177.41 -39.53 18 A ARG 35 -135.78 -46.22 18 A GLU 38 -56.88 96.08 18 A TYR 42 -106.99 78.99 19 A MET 2 -150.55 79.77 19 A CYS 4 -177.17 -39.47 19 A THR 5 61.25 113.06 19 A CYS 9 -94.09 45.63 19 A ARG 11 -101.23 -169.43 19 A GLN 12 -56.65 89.49 19 A LYS 14 -176.50 118.74 19 A ARG 24 -177.01 111.93 19 A SER 26 -178.32 -39.74 19 A SER 28 -64.03 89.59 19 A SER 41 -177.37 80.68 19 A TYR 42 61.55 89.19 20 A CYS 4 60.70 164.87 20 A THR 5 -61.34 89.72 20 A CYS 9 -98.37 31.04 20 A CYS 10 -173.38 109.53 20 A THR 20 -58.27 173.58 20 A CYS 22 -179.92 41.68 20 A TRP 23 -177.23 122.40 20 A THR 25 -145.89 -78.97 20 A SER 26 -168.75 -42.21 20 A SER 29 -60.01 -79.03 20 A HIS 30 -158.43 72.95 20 A TYR 42 -55.77 108.74 20 A PRO 43 -76.41 -167.61 20 A ASN 45 60.29 109.92 21 A ASP 3 -163.94 37.13 21 A CYS 4 61.89 152.06 21 A CYS 9 -98.12 36.28 21 A ARG 11 -170.41 106.41 21 A SER 26 -99.16 30.78 21 A VAL 27 -177.78 38.32 21 A SER 28 -177.31 146.84 21 A HIS 30 59.64 95.16 22 A CYS 9 -171.93 33.46 22 A CYS 10 -176.95 -175.50 22 A ARG 11 -108.41 -167.85 22 A CYS 13 -160.26 40.41 22 A ALA 18 -59.33 101.56 22 A SER 26 -178.01 -39.71 22 A SER 29 -176.60 103.00 22 A TYR 31 60.76 157.20 22 A ASN 45 -146.77 -48.21 23 A MET 2 60.41 83.00 23 A THR 5 -173.13 100.91 23 A CYS 9 -98.33 32.59 23 A CYS 10 -177.00 138.38 23 A ALA 18 -59.04 98.21 23 A CYS 22 -90.34 -70.59 23 A SER 26 75.06 31.87 23 A GLU 38 -66.44 84.29 23 A ASN 45 -168.23 97.28 24 A MET 2 60.70 109.71 24 A ASP 3 -152.36 35.75 24 A CYS 4 60.55 82.81 24 A ARG 11 -87.64 -79.48 24 A GLN 12 -152.82 21.59 24 A CYS 13 178.51 -37.50 24 A TRP 23 -158.71 79.86 24 A SER 26 -107.98 66.82 24 A VAL 27 -177.98 -38.83 24 A TYR 31 60.47 172.44 24 A GLU 38 -60.24 86.74 25 A MET 2 61.94 151.96 25 A ASP 3 68.19 -70.02 25 A THR 5 -61.23 85.64 25 A ARG 11 -88.50 -80.37 25 A CYS 13 179.40 37.89 25 A TRP 23 -167.89 83.88 25 A SER 26 -178.49 -39.58 25 A SER 41 -94.61 45.35 25 A PRO 43 -69.82 85.30 25 A ASN 45 64.18 -78.96 26 A ASP 3 60.56 163.54 26 A THR 5 60.91 75.83 26 A ARG 11 -98.11 -70.48 26 A ALA 18 -60.05 90.51 26 A SER 26 -98.83 31.36 26 A SER 28 -176.72 -170.13 26 A SER 41 -94.63 45.81 26 A PRO 43 -52.23 -176.35 26 A ASN 45 60.49 82.80 27 A MET 2 60.55 85.73 27 A CYS 4 60.42 158.66 27 A GLN 12 63.84 -79.91 27 A CYS 13 -160.33 76.34 27 A LYS 14 -170.20 100.04 27 A SER 26 -177.08 -40.21 27 A SER 29 -170.70 78.74 28 A ASP 3 -143.40 37.76 28 A CYS 4 -177.97 -38.79 28 A THR 5 64.96 109.43 28 A CYS 9 -63.56 -80.08 28 A ARG 11 -103.49 -75.22 28 A GLN 12 -91.29 50.29 28 A ALA 18 -57.81 98.24 28 A CYS 22 -107.46 -66.41 28 A SER 26 -178.45 -39.57 28 A SER 29 -176.50 94.59 28 A TYR 31 60.62 171.74 29 A MET 2 -159.87 -61.83 29 A CYS 4 -154.83 82.18 29 A THR 5 60.41 107.90 29 A GLN 12 -62.23 83.95 29 A LYS 14 -160.88 116.64 29 A ARG 24 58.41 72.78 29 A VAL 27 -160.12 50.31 29 A SER 28 -146.88 36.17 29 A TYR 31 63.05 121.96 29 A ARG 35 -171.51 -41.65 29 A GLU 38 -59.38 95.63 29 A PRO 40 -52.36 176.84 30 A CYS 4 -177.55 -39.47 30 A THR 5 60.41 106.10 30 A CYS 9 -98.92 31.05 30 A GLN 12 60.87 70.96 30 A THR 25 -149.95 -78.10 30 A SER 26 -177.63 -39.44 30 A SER 29 -162.41 -44.23 30 A HIS 30 60.40 -177.41 30 A SER 41 -99.57 36.07 31 A ASP 3 -176.53 125.59 31 A GLN 12 64.15 -79.51 31 A CYS 13 -147.16 36.90 31 A SER 26 -176.44 -77.97 32 A MET 2 60.56 94.73 32 A THR 5 59.80 162.58 32 A CYS 9 -95.66 40.08 32 A ALA 18 -57.61 91.74 32 A TRP 23 66.71 91.65 32 A SER 28 58.65 176.10 32 A SER 29 58.35 89.89 32 A HIS 30 -161.41 104.14 33 A ASP 3 -167.18 88.05 33 A CYS 4 -61.14 -169.59 33 A ARG 11 -100.29 -78.77 33 A CYS 13 176.38 -33.11 33 A VAL 27 -151.92 -45.88 33 A PRO 43 -70.19 -168.16 33 A ASN 45 -60.99 -71.46 34 A ASP 3 -73.05 -74.59 34 A CYS 9 -98.38 30.50 34 A ARG 11 -87.15 -70.32 34 A ALA 18 -59.25 106.54 34 A THR 25 -159.61 -44.94 34 A SER 26 -176.99 -39.22 34 A VAL 27 -153.49 -44.81 34 A SER 28 60.58 165.48 34 A SER 29 -162.33 38.52 34 A TYR 31 62.64 147.66 34 A GLU 38 -67.56 98.42 34 A TYR 42 -58.93 109.58 34 A PRO 43 -69.47 -171.86 34 A ASN 45 68.46 -68.23 35 A MET 2 -145.67 -68.04 35 A THR 5 60.56 82.25 35 A ARG 11 -105.85 -74.63 35 A ALA 18 -59.02 87.96 35 A VAL 27 -178.65 -38.82 35 A SER 29 -160.79 82.60 35 A TYR 31 61.10 155.66 35 A TYR 42 -163.72 86.31 35 A PRO 43 -52.16 101.84 36 A MET 2 60.45 80.97 36 A THR 5 60.80 87.89 36 A CYS 9 -96.83 30.22 36 A ARG 11 -127.85 -75.50 36 A GLN 12 -117.66 73.89 36 A ALA 18 -58.78 103.15 36 A VAL 27 -178.50 -38.79 36 A ARG 35 -177.38 -39.54 36 A PRO 40 -52.37 176.69 36 A PRO 43 -69.93 -169.96 36 A ASN 45 60.51 109.56 37 A CYS 4 -60.20 -169.33 37 A ARG 11 -174.94 126.57 37 A TRP 23 -164.66 -69.33 37 A ARG 24 59.81 89.81 37 A SER 26 -165.09 -43.20 37 A VAL 27 -155.47 -44.10 37 A SER 28 -60.34 97.25 37 A TYR 31 61.24 154.92 37 A SER 41 -98.72 31.39 38 A MET 2 -61.29 93.27 38 A CYS 10 -177.20 121.60 38 A SER 26 -178.79 -39.59 38 A SER 29 -176.66 79.59 38 A PRO 40 -52.74 176.83 39 A CYS 4 64.13 -76.78 39 A THR 5 68.91 131.70 39 A CYS 9 -166.23 -65.87 39 A GLN 12 60.82 69.40 39 A LYS 14 -155.22 80.15 39 A ALA 18 -58.47 98.04 39 A TRP 23 60.35 98.98 39 A SER 26 -144.74 -49.03 39 A VAL 27 -178.72 37.90 40 A CYS 10 176.24 169.33 40 A GLN 12 60.59 72.43 40 A CYS 13 61.53 69.99 40 A LYS 14 -177.83 98.85 40 A CYS 22 -90.34 -74.82 40 A ARG 24 -155.06 84.83 40 A SER 26 -179.20 -39.47 40 A HIS 30 59.39 162.16 40 A GLU 38 -59.29 102.30 40 A PRO 40 -52.61 177.50 40 A TYR 42 -170.81 87.39 Solution structure of jerdostatin from Trimeresurus jerdonii 1 N N disulf 2.030 A CYS 4 A SG CYS 4 1_555 A CYS 13 A SG CYS 13 1_555 disulf 2.030 A CYS 9 A SG CYS 9 1_555 A CYS 32 A SG CYS 32 1_555 disulf 2.030 A CYS 10 A SG CYS 10 1_555 A CYS 37 A SG CYS 37 1_555 disulf 2.029 A CYS 22 A SG CYS 22 1_555 A CYS 39 A SG CYS 39 1_555 TOXIN VENOM, TOXIN, CELL ADHESION, BLOOD COAGULATION 2W9O PDB 1 2W9O DISS_TRIJE UNP 1 Q7ZZM2 1 3 2W9O 1 3 2W9O A 1 1 3 68 110 2W9O 4 46 Q7ZZM2 A 2 4 46 1 P 1