0.025654
0.000000
0.000000
0.000000
0.014779
0.000000
0.000000
0.000000
0.009961
0.00000
0.00000
0.00000
Moche, M.
Schutz, P.
Arrowsmith, C.H.
Berglund, H.
Bountra, C.
Collins, R.
Dahlgren, L.G.
Edwards, A.M.
Flodin, S.
Flores, A.
Graslund, S.
Hammarstrom, M.
Johansson, A.
Johansson, I.
Karlberg, T.
Kotenyova, T.
Nilsson, M.E.
Nyman, T.
Persson, C.
Sagemark, J.
Schueler, H.
Siponen, M.I.
Thorsell, A.G.
Tresaugues, L.
Van Der Berg, S.
Weigelt, J.
Welin, M.
Wisniewska, M.
Nordlund, P.
Structural Genomics Consortium (SGC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
38.980
67.664
100.394
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C10 H14 N5 O7 P
347.221
ADENOSINE MONOPHOSPHATE
non-polymer
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
P
N
15
N
O
N
16
N
O
N
17
N
O
N
18
N
O
N
19
N
C
N
20
R
C
N
21
N
O
N
22
S
C
N
23
N
O
N
24
R
C
N
25
N
O
N
26
R
C
Y
27
N
N
Y
28
N
C
Y
29
N
N
Y
30
N
C
Y
31
N
C
N
32
N
N
Y
33
N
N
Y
34
N
C
Y
35
N
N
Y
36
N
C
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
N
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
N
N
112
R
C
N
113
N
C
N
114
N
O
N
115
N
C
N
116
N
S
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
N
N
126
S
C
N
127
N
C
N
128
N
O
N
129
N
C
N
130
N
C
N
131
N
C
N
132
N
O
N
133
N
N
N
134
N
O
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
N
N
146
S
C
N
147
N
C
N
148
N
O
N
149
N
C
N
150
N
C
N
151
N
C
N
152
N
O
N
153
N
O
N
154
N
O
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
N
N
165
N
C
N
166
N
C
N
167
N
O
N
168
N
O
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
N
N
175
S
C
N
176
N
C
N
177
N
O
N
178
N
C
Y
179
N
C
Y
180
N
N
Y
181
N
C
Y
182
N
C
Y
183
N
N
N
184
N
O
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
H
N
197
N
H
N
198
N
N
N
199
S
C
N
200
N
C
N
201
N
O
N
202
S
C
N
203
N
C
N
204
N
C
N
205
N
C
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
N
N
221
S
C
N
222
N
C
N
223
N
O
N
224
N
C
N
225
N
C
N
226
N
C
N
227
N
C
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
N
N
243
S
C
N
244
N
C
N
245
N
O
N
246
N
C
N
247
N
C
N
248
N
C
N
249
N
C
N
250
N
N
N
251
N
O
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
N
N
268
S
C
N
269
N
C
N
270
N
O
N
271
N
C
N
272
N
C
N
273
N
S
N
274
N
C
N
275
N
O
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
MG
N
288
N
N
N
289
S
C
N
290
N
C
N
291
N
O
N
292
N
C
Y
293
N
C
Y
294
N
C
Y
295
N
C
Y
296
N
C
Y
297
N
C
Y
298
N
C
N
299
N
O
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
P
N
312
N
O
N
313
N
O
N
314
N
O
N
315
N
O
N
316
N
N
N
317
S
C
N
318
N
C
N
319
N
O
N
320
N
C
N
321
N
C
N
322
N
C
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
N
C
N
338
N
O
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
R
C
N
352
N
O
N
353
N
C
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
N
N
365
S
C
N
366
N
C
N
367
N
O
N
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
N
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
N
N
392
S
C
N
393
N
C
N
394
N
O
N
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
N
402
N
O
N
403
N
O
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
N
N
416
S
C
N
417
N
C
N
418
N
O
N
419
N
C
N
420
N
C
N
421
N
C
N
422
N
O
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
Y
37
N
sing
Y
38
N
sing
Y
39
N
doub
N
40
N
sing
Y
41
N
sing
Y
42
N
sing
Y
43
N
doub
N
44
N
sing
Y
45
N
doub
N
46
N
sing
N
47
N
sing
Y
48
N
sing
Y
49
N
doub
N
50
N
sing
Y
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
doub
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
doub
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
doub
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
doub
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
Y
287
N
doub
Y
288
N
sing
Y
289
N
sing
N
290
N
sing
Y
291
N
doub
N
292
N
sing
Y
293
N
doub
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
doub
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
Y
360
N
doub
Y
361
N
sing
Y
362
N
sing
N
363
N
sing
Y
364
N
doub
Y
365
N
sing
Y
366
N
sing
N
367
N
sing
Y
368
N
sing
Y
369
N
doub
N
370
N
sing
Y
371
N
doub
N
372
N
sing
Y
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
doub
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
Y
388
N
doub
Y
389
N
sing
Y
390
N
sing
N
391
N
sing
Y
392
N
doub
N
393
N
sing
Y
394
N
doub
N
395
N
sing
Y
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
doub
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
To be Published
0353
Human 3'(2'), 5'-Bisphosphate Nucleotidase 1 (Bpnt1) in Complex with AMP, Po4 and Magnesium
10.2210/pdb2wef/pdb
pdb_00002wef
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2009-03-01
ADSC CCD
SINGLE WAVELENGTH
M
x-ray
1
0.9795
1.0
I02
Diamond
0.9795
SYNCHROTRON
DIAMOND BEAMLINE I02
C-TERMINAL HEXAHISTIDINE TAG
33968.859
3'(2')\, 5'-BISPHOSPHATE NUCLEOTIDASE 1
3.1.3.7
RESIDUES 6-308
1
man
polymer
24.305
MAGNESIUM ION
3
syn
non-polymer
94.971
PHOSPHATE ION
1
syn
non-polymer
347.221
ADENOSINE MONOPHOSPHATE
1
syn
non-polymer
18.015
water
251
nat
water
BISPHOSPHATE 3'-NUCLEOTIDASE 1, PAP-INOSITOL-1\,4-PHOSPHATASE, BPNTASE 1, PIP
no
no
MTVLMRLVASAYSIAQKAGMIVRRVIAEGDLGIVEKTCATDLQTKADRLAQMSICSSLARKFPKLTIIGEEDLPSEEVDQ
ELIEDSQWEEILKQPCPSQYSAIKEEDLVVWVDPLDGTKEYTEGLLDNVTVLIGIAYEGKAIAGVINQPYYNYEAGPDAV
LGRTIWGVLGLGAFGFQLKEVPAGKHIITTTRSHSNKLVTDCVAAMNPDAVLRVGGAGNKIIQLIEGKASAYVFASPGCK
KWDTCAPEVILHAVGGKLTDIHGNVLQYHKDVKHMNSAGVLATLRNYDYYASRVPESIKNALVPAHHHHHH
MTVLMRLVASAYSIAQKAGMIVRRVIAEGDLGIVEKTCATDLQTKADRLAQMSICSSLARKFPKLTIIGEEDLPSEEVDQ
ELIEDSQWEEILKQPCPSQYSAIKEEDLVVWVDPLDGTKEYTEGLLDNVTVLIGIAYEGKAIAGVINQPYYNYEAGPDAV
LGRTIWGVLGLGAFGFQLKEVPAGKHIITTTRSHSNKLVTDCVAAMNPDAVLRVGGAGNKIIQLIEGKASAYVFASPGCK
KWDTCAPEVILHAVGGKLTDIHGNVLQYHKDVKHMNSAGVLATLRNYDYYASRVPESIKNALVPAHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
MGC
9606
HOMO SAPIENS
469008
ESCHERICHIA COLI
BL21(DE3) R3 PRARE
PNIC-CH2
1
1.81
31.52
NONE
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Derived calculations
Other
Structure summary
Version format compliance
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2009-04-14
1
1
2015-04-29
1
2
2023-12-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
PDBE
Y
PDBE
2009-03-30
REL
REL
MG
MAGNESIUM ION
PO4
PHOSPHATE ION
AMP
ADENOSINE MONOPHOSPHATE
HOH
water
IN CONTRAST TO THE NATIVE ENZYME THE CLONED SEQUENCE
STARTS AT POSITION 6 WITH A THREONINE RESIDUE. THE CLONED
SEQUENCE ALSO CONTAIN A HEXAHISTIDINE TAIL IN THE C-
TERMINUS -AHHHHHH.
1JP4
PDB ENTRY 1JP4
PDB
experimental model
MG
401
2
MG
MG
401
A
MG
402
2
MG
MG
402
A
MG
403
2
MG
MG
403
A
PO4
501
3
PO4
PO4
501
A
AMP
601
4
AMP
AMP
601
A
HOH
2001
5
HOH
HOH
2001
A
HOH
2002
5
HOH
HOH
2002
A
HOH
2003
5
HOH
HOH
2003
A
HOH
2004
5
HOH
HOH
2004
A
HOH
2005
5
HOH
HOH
2005
A
HOH
2006
5
HOH
HOH
2006
A
HOH
2007
5
HOH
HOH
2007
A
HOH
2008
5
HOH
HOH
2008
A
HOH
2009
5
HOH
HOH
2009
A
HOH
2010
5
HOH
HOH
2010
A
HOH
2011
5
HOH
HOH
2011
A
HOH
2012
5
HOH
HOH
2012
A
HOH
2013
5
HOH
HOH
2013
A
HOH
2014
5
HOH
HOH
2014
A
HOH
2015
5
HOH
HOH
2015
A
HOH
2016
5
HOH
HOH
2016
A
HOH
2017
5
HOH
HOH
2017
A
HOH
2018
5
HOH
HOH
2018
A
HOH
2019
5
HOH
HOH
2019
A
HOH
2020
5
HOH
HOH
2020
A
HOH
2021
5
HOH
HOH
2021
A
HOH
2022
5
HOH
HOH
2022
A
HOH
2023
5
HOH
HOH
2023
A
HOH
2024
5
HOH
HOH
2024
A
HOH
2025
5
HOH
HOH
2025
A
HOH
2026
5
HOH
HOH
2026
A
HOH
2027
5
HOH
HOH
2027
A
HOH
2028
5
HOH
HOH
2028
A
HOH
2029
5
HOH
HOH
2029
A
HOH
2030
5
HOH
HOH
2030
A
HOH
2031
5
HOH
HOH
2031
A
HOH
2032
5
HOH
HOH
2032
A
HOH
2033
5
HOH
HOH
2033
A
HOH
2034
5
HOH
HOH
2034
A
HOH
2035
5
HOH
HOH
2035
A
HOH
2036
5
HOH
HOH
2036
A
HOH
2037
5
HOH
HOH
2037
A
HOH
2038
5
HOH
HOH
2038
A
HOH
2039
5
HOH
HOH
2039
A
HOH
2040
5
HOH
HOH
2040
A
HOH
2041
5
HOH
HOH
2041
A
HOH
2042
5
HOH
HOH
2042
A
HOH
2043
5
HOH
HOH
2043
A
HOH
2044
5
HOH
HOH
2044
A
HOH
2045
5
HOH
HOH
2045
A
HOH
2046
5
HOH
HOH
2046
A
HOH
2047
5
HOH
HOH
2047
A
HOH
2048
5
HOH
HOH
2048
A
HOH
2049
5
HOH
HOH
2049
A
HOH
2050
5
HOH
HOH
2050
A
HOH
2051
5
HOH
HOH
2051
A
HOH
2052
5
HOH
HOH
2052
A
HOH
2053
5
HOH
HOH
2053
A
HOH
2054
5
HOH
HOH
2054
A
HOH
2055
5
HOH
HOH
2055
A
HOH
2056
5
HOH
HOH
2056
A
HOH
2057
5
HOH
HOH
2057
A
HOH
2058
5
HOH
HOH
2058
A
HOH
2059
5
HOH
HOH
2059
A
HOH
2060
5
HOH
HOH
2060
A
HOH
2061
5
HOH
HOH
2061
A
HOH
2062
5
HOH
HOH
2062
A
HOH
2063
5
HOH
HOH
2063
A
HOH
2064
5
HOH
HOH
2064
A
HOH
2065
5
HOH
HOH
2065
A
HOH
2066
5
HOH
HOH
2066
A
HOH
2067
5
HOH
HOH
2067
A
HOH
2068
5
HOH
HOH
2068
A
HOH
2069
5
HOH
HOH
2069
A
HOH
2070
5
HOH
HOH
2070
A
HOH
2071
5
HOH
HOH
2071
A
HOH
2072
5
HOH
HOH
2072
A
HOH
2073
5
HOH
HOH
2073
A
HOH
2074
5
HOH
HOH
2074
A
HOH
2075
5
HOH
HOH
2075
A
HOH
2076
5
HOH
HOH
2076
A
HOH
2077
5
HOH
HOH
2077
A
HOH
2078
5
HOH
HOH
2078
A
HOH
2079
5
HOH
HOH
2079
A
HOH
2080
5
HOH
HOH
2080
A
HOH
2081
5
HOH
HOH
2081
A
HOH
2082
5
HOH
HOH
2082
A
HOH
2083
5
HOH
HOH
2083
A
HOH
2084
5
HOH
HOH
2084
A
HOH
2085
5
HOH
HOH
2085
A
HOH
2086
5
HOH
HOH
2086
A
HOH
2087
5
HOH
HOH
2087
A
HOH
2088
5
HOH
HOH
2088
A
HOH
2089
5
HOH
HOH
2089
A
HOH
2090
5
HOH
HOH
2090
A
HOH
2091
5
HOH
HOH
2091
A
HOH
2092
5
HOH
HOH
2092
A
HOH
2093
5
HOH
HOH
2093
A
HOH
2094
5
HOH
HOH
2094
A
HOH
2095
5
HOH
HOH
2095
A
HOH
2096
5
HOH
HOH
2096
A
HOH
2097
5
HOH
HOH
2097
A
HOH
2098
5
HOH
HOH
2098
A
HOH
2099
5
HOH
HOH
2099
A
HOH
2100
5
HOH
HOH
2100
A
HOH
2101
5
HOH
HOH
2101
A
HOH
2102
5
HOH
HOH
2102
A
HOH
2103
5
HOH
HOH
2103
A
HOH
2104
5
HOH
HOH
2104
A
HOH
2105
5
HOH
HOH
2105
A
HOH
2106
5
HOH
HOH
2106
A
HOH
2107
5
HOH
HOH
2107
A
HOH
2108
5
HOH
HOH
2108
A
HOH
2109
5
HOH
HOH
2109
A
HOH
2110
5
HOH
HOH
2110
A
HOH
2111
5
HOH
HOH
2111
A
HOH
2112
5
HOH
HOH
2112
A
HOH
2113
5
HOH
HOH
2113
A
HOH
2114
5
HOH
HOH
2114
A
HOH
2115
5
HOH
HOH
2115
A
HOH
2116
5
HOH
HOH
2116
A
HOH
2117
5
HOH
HOH
2117
A
HOH
2118
5
HOH
HOH
2118
A
HOH
2119
5
HOH
HOH
2119
A
HOH
2120
5
HOH
HOH
2120
A
HOH
2121
5
HOH
HOH
2121
A
HOH
2122
5
HOH
HOH
2122
A
HOH
2123
5
HOH
HOH
2123
A
HOH
2124
5
HOH
HOH
2124
A
HOH
2125
5
HOH
HOH
2125
A
HOH
2126
5
HOH
HOH
2126
A
HOH
2127
5
HOH
HOH
2127
A
HOH
2128
5
HOH
HOH
2128
A
HOH
2129
5
HOH
HOH
2129
A
HOH
2130
5
HOH
HOH
2130
A
HOH
2131
5
HOH
HOH
2131
A
HOH
2132
5
HOH
HOH
2132
A
HOH
2133
5
HOH
HOH
2133
A
HOH
2134
5
HOH
HOH
2134
A
HOH
2135
5
HOH
HOH
2135
A
HOH
2136
5
HOH
HOH
2136
A
HOH
2137
5
HOH
HOH
2137
A
HOH
2138
5
HOH
HOH
2138
A
HOH
2139
5
HOH
HOH
2139
A
HOH
2140
5
HOH
HOH
2140
A
HOH
2141
5
HOH
HOH
2141
A
HOH
2142
5
HOH
HOH
2142
A
HOH
2143
5
HOH
HOH
2143
A
HOH
2144
5
HOH
HOH
2144
A
HOH
2145
5
HOH
HOH
2145
A
HOH
2146
5
HOH
HOH
2146
A
HOH
2147
5
HOH
HOH
2147
A
HOH
2148
5
HOH
HOH
2148
A
HOH
2149
5
HOH
HOH
2149
A
HOH
2150
5
HOH
HOH
2150
A
HOH
2151
5
HOH
HOH
2151
A
HOH
2152
5
HOH
HOH
2152
A
HOH
2153
5
HOH
HOH
2153
A
HOH
2154
5
HOH
HOH
2154
A
HOH
2155
5
HOH
HOH
2155
A
HOH
2156
5
HOH
HOH
2156
A
HOH
2157
5
HOH
HOH
2157
A
HOH
2158
5
HOH
HOH
2158
A
HOH
2159
5
HOH
HOH
2159
A
HOH
2160
5
HOH
HOH
2160
A
HOH
2161
5
HOH
HOH
2161
A
HOH
2162
5
HOH
HOH
2162
A
HOH
2163
5
HOH
HOH
2163
A
HOH
2164
5
HOH
HOH
2164
A
HOH
2165
5
HOH
HOH
2165
A
HOH
2166
5
HOH
HOH
2166
A
HOH
2167
5
HOH
HOH
2167
A
HOH
2168
5
HOH
HOH
2168
A
HOH
2169
5
HOH
HOH
2169
A
HOH
2170
5
HOH
HOH
2170
A
HOH
2171
5
HOH
HOH
2171
A
HOH
2172
5
HOH
HOH
2172
A
HOH
2173
5
HOH
HOH
2173
A
HOH
2174
5
HOH
HOH
2174
A
HOH
2175
5
HOH
HOH
2175
A
HOH
2176
5
HOH
HOH
2176
A
HOH
2177
5
HOH
HOH
2177
A
HOH
2178
5
HOH
HOH
2178
A
HOH
2179
5
HOH
HOH
2179
A
HOH
2180
5
HOH
HOH
2180
A
HOH
2181
5
HOH
HOH
2181
A
HOH
2182
5
HOH
HOH
2182
A
HOH
2183
5
HOH
HOH
2183
A
HOH
2184
5
HOH
HOH
2184
A
HOH
2185
5
HOH
HOH
2185
A
HOH
2186
5
HOH
HOH
2186
A
HOH
2187
5
HOH
HOH
2187
A
HOH
2188
5
HOH
HOH
2188
A
HOH
2189
5
HOH
HOH
2189
A
HOH
2190
5
HOH
HOH
2190
A
HOH
2191
5
HOH
HOH
2191
A
HOH
2192
5
HOH
HOH
2192
A
HOH
2193
5
HOH
HOH
2193
A
HOH
2194
5
HOH
HOH
2194
A
HOH
2195
5
HOH
HOH
2195
A
HOH
2196
5
HOH
HOH
2196
A
HOH
2197
5
HOH
HOH
2197
A
HOH
2198
5
HOH
HOH
2198
A
HOH
2199
5
HOH
HOH
2199
A
HOH
2200
5
HOH
HOH
2200
A
HOH
2201
5
HOH
HOH
2201
A
HOH
2202
5
HOH
HOH
2202
A
HOH
2203
5
HOH
HOH
2203
A
HOH
2204
5
HOH
HOH
2204
A
HOH
2205
5
HOH
HOH
2205
A
HOH
2206
5
HOH
HOH
2206
A
HOH
2207
5
HOH
HOH
2207
A
HOH
2208
5
HOH
HOH
2208
A
HOH
2209
5
HOH
HOH
2209
A
HOH
2210
5
HOH
HOH
2210
A
HOH
2211
5
HOH
HOH
2211
A
HOH
2212
5
HOH
HOH
2212
A
HOH
2213
5
HOH
HOH
2213
A
HOH
2214
5
HOH
HOH
2214
A
HOH
2215
5
HOH
HOH
2215
A
HOH
2216
5
HOH
HOH
2216
A
HOH
2217
5
HOH
HOH
2217
A
HOH
2218
5
HOH
HOH
2218
A
HOH
2219
5
HOH
HOH
2219
A
HOH
2220
5
HOH
HOH
2220
A
HOH
2221
5
HOH
HOH
2221
A
HOH
2222
5
HOH
HOH
2222
A
HOH
2223
5
HOH
HOH
2223
A
HOH
2224
5
HOH
HOH
2224
A
HOH
2225
5
HOH
HOH
2225
A
HOH
2226
5
HOH
HOH
2226
A
HOH
2227
5
HOH
HOH
2227
A
HOH
2228
5
HOH
HOH
2228
A
HOH
2229
5
HOH
HOH
2229
A
HOH
2230
5
HOH
HOH
2230
A
HOH
2231
5
HOH
HOH
2231
A
HOH
2232
5
HOH
HOH
2232
A
HOH
2233
5
HOH
HOH
2233
A
HOH
2234
5
HOH
HOH
2234
A
HOH
2235
5
HOH
HOH
2235
A
HOH
2236
5
HOH
HOH
2236
A
HOH
2237
5
HOH
HOH
2237
A
HOH
2238
5
HOH
HOH
2238
A
HOH
2239
5
HOH
HOH
2239
A
HOH
2240
5
HOH
HOH
2240
A
HOH
2241
5
HOH
HOH
2241
A
HOH
2242
5
HOH
HOH
2242
A
HOH
2243
5
HOH
HOH
2243
A
HOH
2244
5
HOH
HOH
2244
A
HOH
2245
5
HOH
HOH
2245
A
HOH
2246
5
HOH
HOH
2246
A
HOH
2247
5
HOH
HOH
2247
A
HOH
2248
5
HOH
HOH
2248
A
HOH
2249
5
HOH
HOH
2249
A
HOH
2250
5
HOH
HOH
2250
A
HOH
2251
5
HOH
HOH
2251
A
n
1
5
A
THR
6
n
2
THR
6
A
VAL
7
n
3
VAL
7
A
LEU
8
n
4
LEU
8
A
MET
9
n
5
MET
9
A
ARG
10
n
6
ARG
10
A
LEU
11
n
7
LEU
11
A
VAL
12
n
8
VAL
12
A
ALA
13
n
9
ALA
13
A
SER
14
n
10
SER
14
A
ALA
15
n
11
ALA
15
A
TYR
16
n
12
TYR
16
A
SER
17
n
13
SER
17
A
ILE
18
n
14
ILE
18
A
ALA
19
n
15
ALA
19
A
GLN
20
n
16
GLN
20
A
LYS
21
n
17
LYS
21
A
ALA
22
n
18
ALA
22
A
GLY
23
n
19
GLY
23
A
MET
24
n
20
MET
24
A
ILE
25
n
21
ILE
25
A
VAL
26
n
22
VAL
26
A
ARG
27
n
23
ARG
27
A
ARG
28
n
24
ARG
28
A
VAL
29
n
25
VAL
29
A
ILE
30
n
26
ILE
30
A
ALA
31
n
27
ALA
31
A
GLU
32
n
28
GLU
32
A
GLY
33
n
29
GLY
33
A
ASP
34
n
30
ASP
34
A
LEU
35
n
31
LEU
35
A
GLY
36
n
32
GLY
36
A
ILE
37
n
33
ILE
37
A
VAL
38
n
34
VAL
38
A
GLU
39
n
35
GLU
39
A
LYS
40
n
36
LYS
40
A
THR
41
n
37
THR
41
A
CYS
42
n
38
CYS
42
A
ALA
43
n
39
ALA
43
A
THR
44
n
40
THR
44
A
ASP
45
n
41
ASP
45
A
LEU
46
n
42
LEU
46
A
GLN
47
n
43
GLN
47
A
THR
48
n
44
THR
48
A
LYS
49
n
45
LYS
49
A
ALA
50
n
46
ALA
50
A
ASP
51
n
47
ASP
51
A
ARG
52
n
48
ARG
52
A
LEU
53
n
49
LEU
53
A
ALA
54
n
50
ALA
54
A
GLN
55
n
51
GLN
55
A
MET
56
n
52
MET
56
A
SER
57
n
53
SER
57
A
ILE
58
n
54
ILE
58
A
CYS
59
n
55
CYS
59
A
SER
60
n
56
SER
60
A
SER
61
n
57
SER
61
A
LEU
62
n
58
LEU
62
A
ALA
63
n
59
ALA
63
A
ARG
64
n
60
ARG
64
A
LYS
65
n
61
LYS
65
A
PHE
66
n
62
PHE
66
A
PRO
67
n
63
PRO
67
A
LYS
68
n
64
LYS
68
A
LEU
69
n
65
LEU
69
A
THR
70
n
66
THR
70
A
ILE
71
n
67
ILE
71
A
ILE
72
n
68
ILE
72
A
GLY
73
n
69
GLY
73
A
GLU
74
n
70
GLU
74
A
GLU
75
n
71
GLU
75
A
ASP
76
n
72
ASP
76
A
LEU
77
n
73
LEU
77
A
PRO
78
n
74
PRO
78
A
SER
79
n
75
SER
79
A
GLU
80
n
76
GLU
80
A
GLU
81
n
77
GLU
81
A
VAL
82
n
78
VAL
82
A
ASP
83
n
79
ASP
83
A
GLN
84
n
80
GLN
84
A
GLU
85
n
81
GLU
85
A
LEU
86
n
82
LEU
86
A
ILE
87
n
83
ILE
87
A
GLU
88
n
84
GLU
88
A
ASP
89
n
85
ASP
89
A
SER
90
n
86
SER
90
A
GLN
91
n
87
GLN
91
A
TRP
92
n
88
TRP
92
A
GLU
93
n
89
GLU
93
A
GLU
94
n
90
GLU
94
A
ILE
95
n
91
ILE
95
A
LEU
96
n
92
LEU
96
A
LYS
97
n
93
LYS
97
A
GLN
98
n
94
GLN
98
A
PRO
99
n
95
PRO
99
A
CYS
100
n
96
CYS
100
A
PRO
101
n
97
PRO
101
A
SER
102
n
98
SER
102
A
GLN
103
n
99
GLN
103
A
TYR
104
n
100
TYR
104
A
SER
105
n
101
SER
105
A
ALA
106
n
102
ALA
106
A
ILE
107
n
103
ILE
107
A
LYS
108
n
104
LYS
108
A
GLU
109
n
105
GLU
109
A
GLU
110
n
106
GLU
110
A
ASP
111
n
107
ASP
111
A
LEU
112
n
108
LEU
112
A
VAL
113
n
109
VAL
113
A
VAL
114
n
110
VAL
114
A
TRP
115
n
111
TRP
115
A
VAL
116
n
112
VAL
116
A
ASP
117
n
113
ASP
117
A
PRO
118
n
114
PRO
118
A
LEU
119
n
115
LEU
119
A
ASP
120
n
116
ASP
120
A
GLY
121
n
117
GLY
121
A
THR
122
n
118
THR
122
A
LYS
123
n
119
LYS
123
A
GLU
124
n
120
GLU
124
A
TYR
125
n
121
TYR
125
A
THR
126
n
122
THR
126
A
GLU
127
n
123
GLU
127
A
GLY
128
n
124
GLY
128
A
LEU
129
n
125
LEU
129
A
LEU
130
n
126
LEU
130
A
ASP
131
n
127
ASP
131
A
ASN
132
n
128
ASN
132
A
VAL
133
n
129
VAL
133
A
THR
134
n
130
THR
134
A
VAL
135
n
131
VAL
135
A
LEU
136
n
132
LEU
136
A
ILE
137
n
133
ILE
137
A
GLY
138
n
134
GLY
138
A
ILE
139
n
135
ILE
139
A
ALA
140
n
136
ALA
140
A
TYR
141
n
137
TYR
141
A
GLU
142
n
138
GLU
142
A
GLY
143
n
139
GLY
143
A
LYS
144
n
140
LYS
144
A
ALA
145
n
141
ALA
145
A
ILE
146
n
142
ILE
146
A
ALA
147
n
143
ALA
147
A
GLY
148
n
144
GLY
148
A
VAL
149
n
145
VAL
149
A
ILE
150
n
146
ILE
150
A
ASN
151
n
147
ASN
151
A
GLN
152
n
148
GLN
152
A
PRO
153
n
149
PRO
153
A
TYR
154
n
150
TYR
154
A
TYR
155
n
151
TYR
155
A
ASN
156
n
152
ASN
156
A
TYR
157
n
153
TYR
157
A
GLU
158
n
154
GLU
158
A
ALA
159
n
155
ALA
159
A
GLY
160
n
156
GLY
160
A
PRO
161
n
157
PRO
161
A
ASP
162
n
158
ASP
162
A
ALA
163
n
159
ALA
163
A
VAL
164
n
160
VAL
164
A
LEU
165
n
161
LEU
165
A
GLY
166
n
162
GLY
166
A
ARG
167
n
163
ARG
167
A
THR
168
n
164
THR
168
A
ILE
169
n
165
ILE
169
A
TRP
170
n
166
TRP
170
A
GLY
171
n
167
GLY
171
A
VAL
172
n
168
VAL
172
A
LEU
173
n
169
LEU
173
A
GLY
174
n
170
GLY
174
A
LEU
175
n
171
LEU
175
A
GLY
176
n
172
GLY
176
A
ALA
177
n
173
ALA
177
A
PHE
178
n
174
PHE
178
A
GLY
179
n
175
GLY
179
A
PHE
180
n
176
PHE
180
A
GLN
181
n
177
GLN
181
A
LEU
182
n
178
LEU
182
A
LYS
183
n
179
LYS
183
A
GLU
184
n
180
GLU
184
A
VAL
185
n
181
VAL
185
A
PRO
186
n
182
PRO
186
A
ALA
187
n
183
ALA
187
A
GLY
188
n
184
GLY
188
A
LYS
189
n
185
LYS
189
A
HIS
190
n
186
HIS
190
A
ILE
191
n
187
ILE
191
A
ILE
192
n
188
ILE
192
A
THR
193
n
189
THR
193
A
THR
194
n
190
THR
194
A
THR
195
n
191
THR
195
A
ARG
196
n
192
ARG
196
A
SER
197
n
193
SER
197
A
HIS
198
n
194
HIS
198
A
SER
199
n
195
SER
199
A
ASN
200
n
196
ASN
200
A
LYS
201
n
197
LYS
201
A
LEU
202
n
198
LEU
202
A
VAL
203
n
199
VAL
203
A
THR
204
n
200
THR
204
A
ASP
205
n
201
ASP
205
A
CYS
206
n
202
CYS
206
A
VAL
207
n
203
VAL
207
A
ALA
208
n
204
ALA
208
A
ALA
209
n
205
ALA
209
A
MET
210
n
206
MET
210
A
ASN
211
n
207
ASN
211
A
PRO
212
n
208
PRO
212
A
ASP
213
n
209
ASP
213
A
ALA
214
n
210
ALA
214
A
VAL
215
n
211
VAL
215
A
LEU
216
n
212
LEU
216
A
ARG
217
n
213
ARG
217
A
VAL
218
n
214
VAL
218
A
GLY
219
n
215
GLY
219
A
GLY
220
n
216
GLY
220
A
ALA
221
n
217
ALA
221
A
GLY
222
n
218
GLY
222
A
ASN
223
n
219
ASN
223
A
LYS
224
n
220
LYS
224
A
ILE
225
n
221
ILE
225
A
ILE
226
n
222
ILE
226
A
GLN
227
n
223
GLN
227
A
LEU
228
n
224
LEU
228
A
ILE
229
n
225
ILE
229
A
GLU
230
n
226
GLU
230
A
GLY
231
n
227
GLY
231
A
LYS
232
n
228
LYS
232
A
ALA
233
n
229
ALA
233
A
SER
234
n
230
SER
234
A
ALA
235
n
231
ALA
235
A
TYR
236
n
232
TYR
236
A
VAL
237
n
233
VAL
237
A
PHE
238
n
234
PHE
238
A
ALA
239
n
235
ALA
239
A
SER
240
n
236
SER
240
A
PRO
241
n
237
PRO
241
A
GLY
242
n
238
GLY
242
A
CYS
243
n
239
CYS
243
A
LYS
244
n
240
LYS
244
A
LYS
245
n
241
LYS
245
A
TRP
246
n
242
TRP
246
A
ASP
247
n
243
ASP
247
A
THR
248
n
244
THR
248
A
CYS
249
n
245
CYS
249
A
ALA
250
n
246
ALA
250
A
PRO
251
n
247
PRO
251
A
GLU
252
n
248
GLU
252
A
VAL
253
n
249
VAL
253
A
ILE
254
n
250
ILE
254
A
LEU
255
n
251
LEU
255
A
HIS
256
n
252
HIS
256
A
ALA
257
n
253
ALA
257
A
VAL
258
n
254
VAL
258
A
GLY
259
n
255
GLY
259
A
GLY
260
n
256
GLY
260
A
LYS
261
n
257
LYS
261
A
LEU
262
n
258
LEU
262
A
THR
263
n
259
THR
263
A
ASP
264
n
260
ASP
264
A
ILE
265
n
261
ILE
265
A
HIS
266
n
262
HIS
266
A
GLY
267
n
263
GLY
267
A
ASN
268
n
264
ASN
268
A
VAL
269
n
265
VAL
269
A
LEU
270
n
266
LEU
270
A
GLN
271
n
267
GLN
271
A
TYR
272
n
268
TYR
272
A
HIS
273
n
269
HIS
273
A
LYS
274
n
270
LYS
274
A
ASP
275
n
271
ASP
275
A
VAL
276
n
272
VAL
276
A
LYS
277
n
273
LYS
277
A
HIS
278
n
274
HIS
278
A
MET
279
n
275
MET
279
A
ASN
280
n
276
ASN
280
A
SER
281
n
277
SER
281
A
ALA
282
n
278
ALA
282
A
GLY
283
n
279
GLY
283
A
VAL
284
n
280
VAL
284
A
LEU
285
n
281
LEU
285
A
ALA
286
n
282
ALA
286
A
THR
287
n
283
THR
287
A
LEU
288
n
284
LEU
288
A
ARG
289
n
285
ARG
289
A
ASN
290
n
286
ASN
290
A
TYR
291
n
287
TYR
291
A
ASP
292
n
288
ASP
292
A
TYR
293
n
289
TYR
293
A
TYR
294
n
290
TYR
294
A
ALA
295
n
291
ALA
295
A
SER
296
n
292
SER
296
A
ARG
297
n
293
ARG
297
A
VAL
298
n
294
VAL
298
A
PRO
299
n
295
PRO
299
A
GLU
300
n
296
GLU
300
A
SER
301
n
297
SER
301
A
ILE
302
n
298
ILE
302
A
LYS
303
n
299
LYS
303
A
ASN
304
n
300
ASN
304
A
ALA
305
n
301
ALA
305
A
LEU
306
n
302
LEU
306
A
VAL
307
n
303
VAL
307
A
PRO
308
n
304
PRO
308
A
n
305
309
A
n
306
310
A
n
307
311
A
n
308
312
A
n
309
313
A
n
310
314
A
n
311
315
A
author_and_software_defined_assembly
PQS
1
monomeric
A
GLU
74
A
OE1
GLU
70
1_555
A
MG
402
C
MG
MG
1_555
A
ASP
117
A
OD1
ASP
113
1_555
90.1
A
GLU
74
A
OE1
GLU
70
1_555
A
MG
402
C
MG
MG
1_555
A
LEU
119
A
O
LEU
115
1_555
167.9
A
ASP
117
A
OD1
ASP
113
1_555
A
MG
402
C
MG
MG
1_555
A
LEU
119
A
O
LEU
115
1_555
87.4
A
GLU
74
A
OE1
GLU
70
1_555
A
MG
402
C
MG
MG
1_555
A
PO4
501
E
O3
PO4
1_555
95.0
A
ASP
117
A
OD1
ASP
113
1_555
A
MG
402
C
MG
MG
1_555
A
PO4
501
E
O3
PO4
1_555
95.8
A
LEU
119
A
O
LEU
115
1_555
A
MG
402
C
MG
MG
1_555
A
PO4
501
E
O3
PO4
1_555
97.0
A
GLU
74
A
OE1
GLU
70
1_555
A
MG
402
C
MG
MG
1_555
A
PO4
501
E
O4
PO4
1_555
99.8
A
ASP
117
A
OD1
ASP
113
1_555
A
MG
402
C
MG
MG
1_555
A
PO4
501
E
O4
PO4
1_555
163.3
A
LEU
119
A
O
LEU
115
1_555
A
MG
402
C
MG
MG
1_555
A
PO4
501
E
O4
PO4
1_555
85.6
A
PO4
501
E
O3
PO4
1_555
A
MG
402
C
MG
MG
1_555
A
PO4
501
E
O4
PO4
1_555
70.2
A
GLU
74
A
OE1
GLU
70
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
2038
G
O
HOH
1_555
86.4
A
ASP
117
A
OD1
ASP
113
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
2038
G
O
HOH
1_555
104.7
A
LEU
119
A
O
LEU
115
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
2038
G
O
HOH
1_555
82.8
A
PO4
501
E
O3
PO4
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
2038
G
O
HOH
1_555
159.5
A
PO4
501
E
O4
PO4
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
2038
G
O
HOH
1_555
89.4
A
GLU
74
A
OE2
GLU
70
1_555
A
MG
403
D
MG
MG
1_555
A
PO4
501
E
O1
PO4
1_555
98.8
A
GLU
74
A
OE2
GLU
70
1_555
A
MG
403
D
MG
MG
1_555
A
HOH
2033
G
O
HOH
1_555
89.5
A
PO4
501
E
O1
PO4
1_555
A
MG
403
D
MG
MG
1_555
A
HOH
2033
G
O
HOH
1_555
163.1
A
GLU
74
A
OE2
GLU
70
1_555
A
MG
403
D
MG
MG
1_555
A
HOH
2035
G
O
HOH
1_555
171.0
A
PO4
501
E
O1
PO4
1_555
A
MG
403
D
MG
MG
1_555
A
HOH
2035
G
O
HOH
1_555
89.6
A
HOH
2033
G
O
HOH
1_555
A
MG
403
D
MG
MG
1_555
A
HOH
2035
G
O
HOH
1_555
81.6
A
GLU
74
A
OE2
GLU
70
1_555
A
MG
403
D
MG
MG
1_555
A
HOH
2064
G
O
HOH
1_555
86.0
A
PO4
501
E
O1
PO4
1_555
A
MG
403
D
MG
MG
1_555
A
HOH
2064
G
O
HOH
1_555
105.9
A
HOH
2033
G
O
HOH
1_555
A
MG
403
D
MG
MG
1_555
A
HOH
2064
G
O
HOH
1_555
89.3
A
HOH
2035
G
O
HOH
1_555
A
MG
403
D
MG
MG
1_555
A
HOH
2064
G
O
HOH
1_555
94.8
A
GLU
74
A
OE2
GLU
70
1_555
A
MG
403
D
MG
MG
1_555
A
HOH
2249
G
O
HOH
1_555
89.5
A
PO4
501
E
O1
PO4
1_555
A
MG
403
D
MG
MG
1_555
A
HOH
2249
G
O
HOH
1_555
81.4
A
HOH
2033
G
O
HOH
1_555
A
MG
403
D
MG
MG
1_555
A
HOH
2249
G
O
HOH
1_555
84.0
A
HOH
2035
G
O
HOH
1_555
A
MG
403
D
MG
MG
1_555
A
HOH
2249
G
O
HOH
1_555
88.7
A
HOH
2064
G
O
HOH
1_555
A
MG
403
D
MG
MG
1_555
A
HOH
2249
G
O
HOH
1_555
171.9
A
ASP
117
A
OD2
ASP
113
1_555
A
MG
401
B
MG
MG
1_555
A
ASP
120
A
OD1
ASP
116
1_555
96.3
A
ASP
117
A
OD2
ASP
113
1_555
A
MG
401
B
MG
MG
1_555
A
ASP
247
A
OD1
ASP
243
1_555
92.9
A
ASP
120
A
OD1
ASP
116
1_555
A
MG
401
B
MG
MG
1_555
A
ASP
247
A
OD1
ASP
243
1_555
86.3
A
ASP
117
A
OD2
ASP
113
1_555
A
MG
401
B
MG
MG
1_555
A
PO4
501
E
O3
PO4
1_555
88.8
A
ASP
120
A
OD1
ASP
116
1_555
A
MG
401
B
MG
MG
1_555
A
PO4
501
E
O3
PO4
1_555
100.4
A
ASP
247
A
OD1
ASP
243
1_555
A
MG
401
B
MG
MG
1_555
A
PO4
501
E
O3
PO4
1_555
172.9
A
ASP
117
A
OD2
ASP
113
1_555
A
MG
401
B
MG
MG
1_555
A
AMP
601
F
O3'
AMP
1_555
173.3
A
ASP
120
A
OD1
ASP
116
1_555
A
MG
401
B
MG
MG
1_555
A
AMP
601
F
O3'
AMP
1_555
87.0
A
ASP
247
A
OD1
ASP
243
1_555
A
MG
401
B
MG
MG
1_555
A
AMP
601
F
O3'
AMP
1_555
93.3
A
PO4
501
E
O3
PO4
1_555
A
MG
401
B
MG
MG
1_555
A
AMP
601
F
O3'
AMP
1_555
84.8
A
ASP
117
A
OD2
ASP
113
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
2206
G
O
HOH
1_555
98.4
A
ASP
120
A
OD1
ASP
116
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
2206
G
O
HOH
1_555
162.1
A
ASP
247
A
OD1
ASP
243
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
2206
G
O
HOH
1_555
82.8
A
PO4
501
E
O3
PO4
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
2206
G
O
HOH
1_555
90.1
A
AMP
601
F
O3'
AMP
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
2206
G
O
HOH
1_555
79.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LYS
40
A
N
LYS
36
A
O
ASP
45
A
O
ASP
41
A
N
THR
70
A
N
THR
66
A
O
LEU
112
A
O
LEU
108
A
N
ASP
120
A
N
ASP
116
A
O
THR
134
A
O
THR
130
A
N
TYR
141
A
N
TYR
137
A
O
LYS
144
A
O
LYS
140
A
N
GLN
152
A
N
GLN
148
A
O
ARG
167
A
O
ARG
163
A
N
VAL
172
A
N
VAL
168
A
O
GLY
176
A
O
GLY
172
A
N
LEU
216
A
N
LEU
212
A
O
ILE
192
A
O
ILE
188
A
N
THR
193
A
N
THR
189
A
O
ALA
235
A
O
ALA
231
A
N
PHE
238
A
N
PHE
234
A
O
VAL
284
A
O
VAL
280
A
N
THR
287
A
N
THR
283
A
O
LYS
261
A
O
LYS
257
1
A
HOH
2073
G
HOH
1
A
HOH
2103
G
HOH
1
A
MET
5
A
MET
1
1
Y
1
A
ALA
309
A
ALA
305
1
Y
1
A
HIS
310
A
HIS
306
1
Y
1
A
HIS
311
A
HIS
307
1
Y
1
A
HIS
312
A
HIS
308
1
Y
1
A
HIS
313
A
HIS
309
1
Y
1
A
HIS
314
A
HIS
310
1
Y
1
A
HIS
315
A
HIS
311
1
Y
1
A
A
O
O
HOH
HOH
2053
2055
1.95
1
A
A
O
O
HOH
HOH
2053
2056
2.12
1
A
A
OD1
O
ASN
HOH
290
2233
2.13
1
A
A
O
O
HOH
HOH
2053
2054
2.16
1
-3.17
0.50
120.30
117.13
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
167
167
167
N
1
A
A
CB
SG
CYS
CYS
243
243
-0.099
0.016
1.812
1.713
N
1
A
A
O
O
HOH
HOH
2028
2053
2.13
1_555
3_545
1
A
A
O
O
HOH
HOH
2053
2139
2.13
1_555
3_655
1
A
LYS
40
-97.08
-96.47
1
A
CYS
42
-172.16
-177.47
12.01
0.06000
0.00000
0.00000
-0.04000
0.00000
-0.01000
0.965
0.941
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
0.189
0.144
0.146
1.80
19.52
1284
24052
5.100
99.9
2.207
0.071
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.116
0.114
0.80
0.80
1.40
PDB ENTRY 1JP4
MAXIMUM LIKELIHOOD
MASK
1.80
19.52
251
2593
31
0
2311
0.024
0.022
2403
0.001
0.020
1586
1.906
1.985
3271
1.065
3.000
3906
6.339
5.000
306
36.615
25.000
96
13.503
15.000
411
15.634
15.000
11
0.126
0.200
378
0.010
0.021
2659
0.001
0.020
443
1.239
1.500
1514
2.176
2.000
2443
3.429
3.000
889
5.685
4.500
828
0.1860
0.1540
1.85
97
1747
20
100.00
1.80
19.52
2WEF
30231
0.0
0.09
1
20.30
13.5
99.5
0.55
1.69
1.78
3.80
1
8.5
97.2
refinement
REFMAC
5.5.0072
data reduction
XDS
data scaling
SCALA
phasing
MOLREP
Human 3'(2'), 5'-bisphosphate nucleotidase 1 (BPNT1) in complex with AMP, PO4 and Magnesium
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
4
N
N
5
N
N
A
THR
6
A
THR
2
HELX_P
A
GLY
33
A
GLY
29
1
1
28
A
THR
48
A
THR
44
HELX_P
A
PHE
66
A
PHE
62
1
2
19
A
ASP
83
A
ASP
79
HELX_P
A
ILE
87
A
ILE
83
5
3
5
A
TRP
92
A
TRP
88
HELX_P
A
LYS
97
A
LYS
93
1
4
6
A
PRO
101
A
PRO
97
HELX_P
A
SER
105
A
SER
101
5
5
5
A
LYS
108
A
LYS
104
HELX_P
A
GLU
110
A
GLU
106
5
6
3
A
GLY
121
A
GLY
117
HELX_P
A
GLU
127
A
GLU
123
1
7
7
A
LEU
129
A
LEU
125
HELX_P
A
VAL
133
A
VAL
129
5
8
5
A
ASN
200
A
ASN
196
HELX_P
A
ALA
209
A
ALA
205
1
9
10
A
GLY
220
A
GLY
216
HELX_P
A
GLU
230
A
GLU
226
1
10
11
A
LYS
244
A
LYS
240
HELX_P
A
VAL
258
A
VAL
254
1
11
15
A
ASN
290
A
ASN
286
HELX_P
A
SER
296
A
SER
292
1
12
7
A
PRO
299
A
PRO
295
HELX_P
A
LEU
306
A
LEU
302
1
13
8
metalc
2.053
A
GLU
74
A
OE1
GLU
70
1_555
A
MG
402
C
MG
MG
1_555
metalc
2.018
A
GLU
74
A
OE2
GLU
70
1_555
A
MG
403
D
MG
MG
1_555
metalc
2.085
A
ASP
117
A
OD2
ASP
113
1_555
A
MG
401
B
MG
MG
1_555
metalc
2.059
A
ASP
117
A
OD1
ASP
113
1_555
A
MG
402
C
MG
MG
1_555
metalc
2.073
A
LEU
119
A
O
LEU
115
1_555
A
MG
402
C
MG
MG
1_555
metalc
2.047
A
ASP
120
A
OD1
ASP
116
1_555
A
MG
401
B
MG
MG
1_555
metalc
2.033
A
ASP
247
A
OD1
ASP
243
1_555
A
MG
401
B
MG
MG
1_555
metalc
1.971
A
MG
401
B
MG
MG
1_555
A
PO4
501
E
O3
PO4
1_555
metalc
2.303
A
MG
401
B
MG
MG
1_555
A
AMP
601
F
O3'
AMP
1_555
metalc
2.262
A
MG
401
B
MG
MG
1_555
A
HOH
2206
G
O
HOH
1_555
metalc
2.110
A
MG
402
C
MG
MG
1_555
A
PO4
501
E
O3
PO4
1_555
metalc
2.219
A
MG
402
C
MG
MG
1_555
A
PO4
501
E
O4
PO4
1_555
metalc
2.086
A
MG
402
C
MG
MG
1_555
A
HOH
2038
G
O
HOH
1_555
metalc
2.009
A
MG
403
D
MG
MG
1_555
A
PO4
501
E
O1
PO4
1_555
metalc
2.057
A
MG
403
D
MG
MG
1_555
A
HOH
2033
G
O
HOH
1_555
metalc
2.061
A
MG
403
D
MG
MG
1_555
A
HOH
2035
G
O
HOH
1_555
metalc
2.132
A
MG
403
D
MG
MG
1_555
A
HOH
2064
G
O
HOH
1_555
metalc
2.215
A
MG
403
D
MG
MG
1_555
A
HOH
2249
G
O
HOH
1_555
HYDROLASE
HYDROLASE, SULFUR METABOLISM, STRUCTURAL GENOMICS CONSORTIUM, SGC
2WEF
PDB
1
2WEF
BPNT1_HUMAN
UNP
1
O95861
5
5
2WEF
5
5
2WEF
A
1
1
1
6
308
2WEF
6
308
O95861
A
2
2
304
309
315
2WEF
309
315
2WEF
A
1
305
311
2
6
5
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
A
VAL
38
A
VAL
34
A
CYS
42
A
CYS
38
A
ASP
45
A
ASP
41
A
GLN
47
A
GLN
43
A
THR
70
A
THR
66
A
GLY
73
A
GLY
69
A
LEU
112
A
LEU
108
A
ASP
120
A
ASP
116
A
THR
134
A
THR
130
A
TYR
141
A
TYR
137
A
LYS
144
A
LYS
140
A
GLN
152
A
GLN
148
A
ARG
167
A
ARG
163
A
VAL
172
A
VAL
168
A
GLY
176
A
GLY
172
A
PHE
178
A
PHE
174
A
ALA
214
A
ALA
210
A
ARG
217
A
ARG
213
A
ILE
191
A
ILE
187
A
THR
194
A
THR
190
A
ALA
235
A
ALA
231
A
PHE
238
A
PHE
234
A
VAL
284
A
VAL
280
A
THR
287
A
THR
283
A
LYS
261
A
LYS
257
A
THR
263
A
THR
259
BINDING SITE FOR RESIDUE MG A 401
A
MG
401
Software
7
BINDING SITE FOR RESIDUE MG A 402
A
MG
402
Software
6
BINDING SITE FOR RESIDUE MG A 403
A
MG
403
Software
6
BINDING SITE FOR RESIDUE PO4 A 501
A
PO4
501
Software
17
BINDING SITE FOR RESIDUE AMP A 601
A
AMP
601
Software
16
A
ASP
117
A
ASP
113
7
1_555
A
ASP
120
A
ASP
116
7
1_555
A
ASP
247
A
ASP
243
7
1_555
A
MG
402
C
MG
7
1_555
A
PO4
501
E
PO4
7
1_555
A
AMP
601
F
AMP
7
1_555
A
HOH
2206
G
HOH
7
1_555
A
GLU
74
A
GLU
70
6
1_555
A
ASP
117
A
ASP
113
6
1_555
A
LEU
119
A
LEU
115
6
1_555
A
MG
401
B
MG
6
1_555
A
PO4
501
E
PO4
6
1_555
A
HOH
2038
G
HOH
6
1_555
A
GLU
74
A
GLU
70
6
1_555
A
PO4
501
E
PO4
6
1_555
A
HOH
2033
G
HOH
6
1_555
A
HOH
2035
G
HOH
6
1_555
A
HOH
2064
G
HOH
6
1_555
A
HOH
2249
G
HOH
6
1_555
A
ASP
51
A
ASP
47
17
1_555
A
GLU
74
A
GLU
70
17
1_555
A
ASP
117
A
ASP
113
17
1_555
A
LEU
119
A
LEU
115
17
1_555
A
ASP
120
A
ASP
116
17
1_555
A
GLY
121
A
GLY
117
17
1_555
A
THR
122
A
THR
118
17
1_555
A
MG
401
B
MG
17
1_555
A
MG
402
C
MG
17
1_555
A
MG
403
D
MG
17
1_555
A
AMP
601
F
AMP
17
1_555
A
HOH
2035
G
HOH
17
1_555
A
HOH
2038
G
HOH
17
1_555
A
HOH
2064
G
HOH
17
1_555
A
HOH
2206
G
HOH
17
1_555
A
HOH
2248
G
HOH
17
1_555
A
HOH
2249
G
HOH
17
1_555
A
ASP
120
A
ASP
116
16
1_555
A
THR
195
A
THR
191
16
1_555
A
HIS
198
A
HIS
194
16
1_555
A
GLY
220
A
GLY
216
16
1_555
A
LYS
224
A
LYS
220
16
1_555
A
PHE
238
A
PHE
234
16
1_555
A
GLY
242
A
GLY
238
16
1_555
A
CYS
243
A
CYS
239
16
1_555
A
ASP
247
A
ASP
243
16
1_555
A
MG
401
B
MG
16
1_555
A
PO4
501
E
PO4
16
1_555
A
HOH
2118
G
HOH
16
1_555
A
HOH
2206
G
HOH
16
1_555
A
HOH
2249
G
HOH
16
1_555
A
HOH
2250
G
HOH
16
1_555
A
HOH
2251
G
HOH
16
1_555
18
P 2 21 21