0.010578 0.006107 0.000000 0.000000 0.012214 0.000000 0.000000 0.000000 0.006720 0.00000 0.00000 0.00000 Seiradake, E. Mao, W. Hernandez, V. Baker, S.J. Plattner, J.J. Alley, M.R.K. Cusack, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 94.540 94.540 148.820 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 390 196 10.1016/J.JMB.2009.04.073 19426743 Crystal Structures of the Human and Fungal Cytosolic Leucyl-tRNA Synthetase Editing Domains: A Structural Basis for the Rational Design of Antifungal Benzoxaboroles. 2009 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD ADSC CCD SINGLE WAVELENGTH M x-ray 1 0.9795 1.0 ID14-4 ESRF 0.9795 SYNCHROTRON ESRF BEAMLINE ID14-4 28471.697 LEUCYL-TRNA SYNTHETASE, CYTOPLASMIC 6.1.1.4 EDITING OR CP1 DOMAIN, RESIDUES 260-509 2 man polymer LEUCINE--TRNA LIGASE, LEURS no yes A(MSE)GPQEYTLLKLKVLEPYPSKLSGLKGKNIFLVAATLRPET(MSE)FGQTNCWVRPD(MSE)KYIGFETVNGDIFI CTQKAARN(MSE)SYQGFTKDNGVVPVVKEL(MSE)GEEILGASLSAPLTSYKVIYVLP(MSE)LTIKEDKGTGVVTSVP SDSPDDIAALRDLKKKQALRAKYGIRDD(MSE)VLPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYL KGFYEGI(MSE)LVDGFKGQKVQDVKKTIQKK(MSE)IDAGDALIY(MSE)E AMGPQEYTLLKLKVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNGDIFICTQKAARNMSYQ GFTKDNGVVPVVKELMGEEILGASLSAPLTSYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYG IRDDMVLPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIMLVDGFKGQKVQDVKKTIQKK MIDAGDALIYME A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n HUMAN sample 9606 HOMO SAPIENS 469008 ESCHERICHIA COLI BL21(DE3) PPROEX HTB 1 3.45 63.2 NONE 0.2 M SODIUM CITRATE TRIBASIC DIHYDRATE PH 8.3, 20% W/V POLYETHYLENE GLYCOL 3350 repository Initial release Version format compliance Version format compliance 1 0 2009-05-19 1 1 2011-05-08 1 2 2011-07-13 SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED. PDBE Y PDBE 2009-04-03 REL SELENOMETHIONINE (MSE): PROTEIN WAS SELENOMETHIONINE LABELLED EXTRA ALA-MET AT N-TERMINUS FROM CLONING. ALA 258 n 1 ALA 258 A MSE 259 n 2 MSE 259 A GLY 260 n 3 GLY 260 A PRO 261 n 4 PRO 261 A GLN 262 n 5 GLN 262 A GLU 263 n 6 GLU 263 A TYR 264 n 7 TYR 264 A THR 265 n 8 THR 265 A LEU 266 n 9 LEU 266 A LEU 267 n 10 LEU 267 A LYS 268 n 11 LYS 268 A LEU 269 n 12 LEU 269 A LYS 270 n 13 LYS 270 A VAL 271 n 14 VAL 271 A LEU 272 n 15 LEU 272 A GLU 273 n 16 GLU 273 A PRO 274 n 17 PRO 274 A TYR 275 n 18 TYR 275 A PRO 276 n 19 PRO 276 A SER 277 n 20 SER 277 A LYS 278 n 21 LYS 278 A LEU 279 n 22 LEU 279 A SER 280 n 23 SER 280 A GLY 281 n 24 GLY 281 A LEU 282 n 25 LEU 282 A LYS 283 n 26 LYS 283 A GLY 284 n 27 GLY 284 A LYS 285 n 28 LYS 285 A ASN 286 n 29 ASN 286 A ILE 287 n 30 ILE 287 A PHE 288 n 31 PHE 288 A LEU 289 n 32 LEU 289 A VAL 290 n 33 VAL 290 A ALA 291 n 34 ALA 291 A ALA 292 n 35 ALA 292 A THR 293 n 36 THR 293 A LEU 294 n 37 LEU 294 A ARG 295 n 38 ARG 295 A PRO 296 n 39 PRO 296 A GLU 297 n 40 GLU 297 A THR 298 n 41 THR 298 A MSE 299 n 42 MSE 299 A PHE 300 n 43 PHE 300 A GLY 301 n 44 GLY 301 A GLN 302 n 45 GLN 302 A THR 303 n 46 THR 303 A ASN 304 n 47 ASN 304 A CYS 305 n 48 CYS 305 A TRP 306 n 49 TRP 306 A VAL 307 n 50 VAL 307 A ARG 308 n 51 ARG 308 A PRO 309 n 52 PRO 309 A ASP 310 n 53 ASP 310 A MSE 311 n 54 MSE 311 A LYS 312 n 55 LYS 312 A TYR 313 n 56 TYR 313 A ILE 314 n 57 ILE 314 A GLY 315 n 58 GLY 315 A PHE 316 n 59 PHE 316 A GLU 317 n 60 GLU 317 A THR 318 n 61 THR 318 A VAL 319 n 62 VAL 319 A ASN 320 n 63 ASN 320 A GLY 321 n 64 GLY 321 A ASP 322 n 65 ASP 322 A ILE 323 n 66 ILE 323 A PHE 324 n 67 PHE 324 A ILE 325 n 68 ILE 325 A CYS 326 n 69 CYS 326 A THR 327 n 70 THR 327 A GLN 328 n 71 GLN 328 A LYS 329 n 72 LYS 329 A ALA 330 n 73 ALA 330 A ALA 331 n 74 ALA 331 A ARG 332 n 75 ARG 332 A ASN 333 n 76 ASN 333 A MSE 334 n 77 MSE 334 A SER 335 n 78 SER 335 A TYR 336 n 79 TYR 336 A GLN 337 n 80 GLN 337 A GLY 338 n 81 GLY 338 A PHE 339 n 82 PHE 339 A THR 340 n 83 THR 340 A LYS 341 n 84 LYS 341 A ASP 342 n 85 ASP 342 A ASN 343 n 86 ASN 343 A GLY 344 n 87 GLY 344 A VAL 345 n 88 VAL 345 A VAL 346 n 89 VAL 346 A PRO 347 n 90 PRO 347 A VAL 348 n 91 VAL 348 A VAL 349 n 92 VAL 349 A LYS 350 n 93 LYS 350 A GLU 351 n 94 GLU 351 A LEU 352 n 95 LEU 352 A MSE 353 n 96 MSE 353 A GLY 354 n 97 GLY 354 A GLU 355 n 98 GLU 355 A GLU 356 n 99 GLU 356 A ILE 357 n 100 ILE 357 A LEU 358 n 101 LEU 358 A GLY 359 n 102 GLY 359 A ALA 360 n 103 ALA 360 A SER 361 n 104 SER 361 A LEU 362 n 105 LEU 362 A SER 363 n 106 SER 363 A ALA 364 n 107 ALA 364 A PRO 365 n 108 PRO 365 A LEU 366 n 109 LEU 366 A THR 367 n 110 THR 367 A SER 368 n 111 SER 368 A TYR 369 n 112 TYR 369 A LYS 370 n 113 LYS 370 A VAL 371 n 114 VAL 371 A ILE 372 n 115 ILE 372 A TYR 373 n 116 TYR 373 A VAL 374 n 117 VAL 374 A LEU 375 n 118 LEU 375 A PRO 376 n 119 PRO 376 A MSE 377 n 120 MSE 377 A LEU 378 n 121 LEU 378 A THR 379 n 122 THR 379 A ILE 380 n 123 ILE 380 A LYS 381 n 124 LYS 381 A GLU 382 n 125 GLU 382 A ASP 383 n 126 ASP 383 A LYS 384 n 127 LYS 384 A GLY 385 n 128 GLY 385 A THR 386 n 129 THR 386 A GLY 387 n 130 GLY 387 A VAL 388 n 131 VAL 388 A VAL 389 n 132 VAL 389 A THR 390 n 133 THR 390 A SER 391 n 134 SER 391 A VAL 392 n 135 VAL 392 A PRO 393 n 136 PRO 393 A SER 394 n 137 SER 394 A ASP 395 n 138 ASP 395 A SER 396 n 139 SER 396 A PRO 397 n 140 PRO 397 A ASP 398 n 141 ASP 398 A ASP 399 n 142 ASP 399 A ILE 400 n 143 ILE 400 A ALA 401 n 144 ALA 401 A ALA 402 n 145 ALA 402 A LEU 403 n 146 LEU 403 A ARG 404 n 147 ARG 404 A ASP 405 n 148 ASP 405 A LEU 406 n 149 LEU 406 A LYS 407 n 150 LYS 407 A LYS 408 n 151 LYS 408 A LYS 409 n 152 LYS 409 A GLN 410 n 153 GLN 410 A ALA 411 n 154 ALA 411 A LEU 412 n 155 LEU 412 A ARG 413 n 156 ARG 413 A ALA 414 n 157 ALA 414 A LYS 415 n 158 LYS 415 A TYR 416 n 159 TYR 416 A GLY 417 n 160 GLY 417 A ILE 418 n 161 ILE 418 A ARG 419 n 162 ARG 419 A ASP 420 n 163 ASP 420 A ASP 421 n 164 ASP 421 A MSE 422 n 165 MSE 422 A VAL 423 n 166 VAL 423 A LEU 424 n 167 LEU 424 A PRO 425 n 168 PRO 425 A PHE 426 n 169 PHE 426 A GLU 427 n 170 GLU 427 A PRO 428 n 171 PRO 428 A VAL 429 n 172 VAL 429 A PRO 430 n 173 PRO 430 A VAL 431 n 174 VAL 431 A ILE 432 n 175 ILE 432 A GLU 433 n 176 GLU 433 A ILE 434 n 177 ILE 434 A PRO 435 n 178 PRO 435 A GLY 436 n 179 GLY 436 A PHE 437 n 180 PHE 437 A GLY 438 n 181 GLY 438 A ASN 439 n 182 ASN 439 A LEU 440 n 183 LEU 440 A SER 441 n 184 SER 441 A ALA 442 n 185 ALA 442 A VAL 443 n 186 VAL 443 A THR 444 n 187 THR 444 A ILE 445 n 188 ILE 445 A CYS 446 n 189 CYS 446 A ASP 447 n 190 ASP 447 A GLU 448 n 191 GLU 448 A LEU 449 n 192 LEU 449 A LYS 450 n 193 LYS 450 A ILE 451 n 194 ILE 451 A GLN 452 n 195 GLN 452 A SER 453 n 196 SER 453 A GLN 454 n 197 GLN 454 A ASN 455 n 198 ASN 455 A ASP 456 n 199 ASP 456 A ARG 457 n 200 ARG 457 A GLU 458 n 201 GLU 458 A LYS 459 n 202 LYS 459 A LEU 460 n 203 LEU 460 A ALA 461 n 204 ALA 461 A GLU 462 n 205 GLU 462 A ALA 463 n 206 ALA 463 A LYS 464 n 207 LYS 464 A GLU 465 n 208 GLU 465 A LYS 466 n 209 LYS 466 A ILE 467 n 210 ILE 467 A TYR 468 n 211 TYR 468 A LEU 469 n 212 LEU 469 A LYS 470 n 213 LYS 470 A GLY 471 n 214 GLY 471 A PHE 472 n 215 PHE 472 A TYR 473 n 216 TYR 473 A GLU 474 n 217 GLU 474 A GLY 475 n 218 GLY 475 A ILE 476 n 219 ILE 476 A MSE 477 n 220 MSE 477 A LEU 478 n 221 LEU 478 A VAL 479 n 222 VAL 479 A ASP 480 n 223 ASP 480 A GLY 481 n 224 GLY 481 A PHE 482 n 225 PHE 482 A LYS 483 n 226 LYS 483 A GLY 484 n 227 GLY 484 A GLN 485 n 228 GLN 485 A LYS 486 n 229 LYS 486 A VAL 487 n 230 VAL 487 A GLN 488 n 231 GLN 488 A ASP 489 n 232 ASP 489 A VAL 490 n 233 VAL 490 A LYS 491 n 234 LYS 491 A LYS 492 n 235 LYS 492 A THR 493 n 236 THR 493 A ILE 494 n 237 ILE 494 A GLN 495 n 238 GLN 495 A LYS 496 n 239 LYS 496 A LYS 497 n 240 LYS 497 A MSE 498 n 241 MSE 498 A ILE 499 n 242 ILE 499 A ASP 500 n 243 ASP 500 A ALA 501 n 244 ALA 501 A GLY 502 n 245 GLY 502 A ASP 503 n 246 ASP 503 A ALA 504 n 247 ALA 504 A LEU 505 n 248 LEU 505 A ILE 506 n 249 ILE 506 A TYR 507 n 250 TYR 507 A MSE 508 n 251 MSE 508 A GLU 509 n 252 GLU 509 A ALA 258 n 1 ALA 258 B MSE 259 n 2 MSE 259 B GLY 260 n 3 GLY 260 B PRO 261 n 4 PRO 261 B GLN 262 n 5 GLN 262 B GLU 263 n 6 GLU 263 B TYR 264 n 7 TYR 264 B THR 265 n 8 THR 265 B LEU 266 n 9 LEU 266 B LEU 267 n 10 LEU 267 B LYS 268 n 11 LYS 268 B LEU 269 n 12 LEU 269 B LYS 270 n 13 LYS 270 B VAL 271 n 14 VAL 271 B LEU 272 n 15 LEU 272 B GLU 273 n 16 GLU 273 B PRO 274 n 17 PRO 274 B TYR 275 n 18 TYR 275 B PRO 276 n 19 PRO 276 B SER 277 n 20 SER 277 B LYS 278 n 21 LYS 278 B LEU 279 n 22 LEU 279 B SER 280 n 23 SER 280 B GLY 281 n 24 GLY 281 B LEU 282 n 25 LEU 282 B LYS 283 n 26 LYS 283 B GLY 284 n 27 GLY 284 B LYS 285 n 28 LYS 285 B ASN 286 n 29 ASN 286 B ILE 287 n 30 ILE 287 B PHE 288 n 31 PHE 288 B LEU 289 n 32 LEU 289 B VAL 290 n 33 VAL 290 B ALA 291 n 34 ALA 291 B ALA 292 n 35 ALA 292 B THR 293 n 36 THR 293 B LEU 294 n 37 LEU 294 B ARG 295 n 38 ARG 295 B PRO 296 n 39 PRO 296 B GLU 297 n 40 GLU 297 B THR 298 n 41 THR 298 B MSE 299 n 42 MSE 299 B PHE 300 n 43 PHE 300 B GLY 301 n 44 GLY 301 B GLN 302 n 45 GLN 302 B THR 303 n 46 THR 303 B ASN 304 n 47 ASN 304 B CYS 305 n 48 CYS 305 B TRP 306 n 49 TRP 306 B VAL 307 n 50 VAL 307 B ARG 308 n 51 ARG 308 B PRO 309 n 52 PRO 309 B ASP 310 n 53 ASP 310 B MSE 311 n 54 MSE 311 B LYS 312 n 55 LYS 312 B TYR 313 n 56 TYR 313 B ILE 314 n 57 ILE 314 B GLY 315 n 58 GLY 315 B PHE 316 n 59 PHE 316 B GLU 317 n 60 GLU 317 B THR 318 n 61 THR 318 B VAL 319 n 62 VAL 319 B ASN 320 n 63 ASN 320 B GLY 321 n 64 GLY 321 B ASP 322 n 65 ASP 322 B ILE 323 n 66 ILE 323 B PHE 324 n 67 PHE 324 B ILE 325 n 68 ILE 325 B CYS 326 n 69 CYS 326 B THR 327 n 70 THR 327 B GLN 328 n 71 GLN 328 B LYS 329 n 72 LYS 329 B ALA 330 n 73 ALA 330 B ALA 331 n 74 ALA 331 B ARG 332 n 75 ARG 332 B ASN 333 n 76 ASN 333 B MSE 334 n 77 MSE 334 B SER 335 n 78 SER 335 B TYR 336 n 79 TYR 336 B GLN 337 n 80 GLN 337 B GLY 338 n 81 GLY 338 B PHE 339 n 82 PHE 339 B THR 340 n 83 THR 340 B LYS 341 n 84 LYS 341 B ASP 342 n 85 ASP 342 B ASN 343 n 86 ASN 343 B GLY 344 n 87 GLY 344 B VAL 345 n 88 VAL 345 B VAL 346 n 89 VAL 346 B PRO 347 n 90 PRO 347 B VAL 348 n 91 VAL 348 B VAL 349 n 92 VAL 349 B LYS 350 n 93 LYS 350 B GLU 351 n 94 GLU 351 B LEU 352 n 95 LEU 352 B MSE 353 n 96 MSE 353 B GLY 354 n 97 GLY 354 B GLU 355 n 98 GLU 355 B GLU 356 n 99 GLU 356 B ILE 357 n 100 ILE 357 B LEU 358 n 101 LEU 358 B GLY 359 n 102 GLY 359 B ALA 360 n 103 ALA 360 B SER 361 n 104 SER 361 B LEU 362 n 105 LEU 362 B SER 363 n 106 SER 363 B ALA 364 n 107 ALA 364 B PRO 365 n 108 PRO 365 B LEU 366 n 109 LEU 366 B THR 367 n 110 THR 367 B SER 368 n 111 SER 368 B TYR 369 n 112 TYR 369 B LYS 370 n 113 LYS 370 B VAL 371 n 114 VAL 371 B ILE 372 n 115 ILE 372 B TYR 373 n 116 TYR 373 B VAL 374 n 117 VAL 374 B LEU 375 n 118 LEU 375 B PRO 376 n 119 PRO 376 B MSE 377 n 120 MSE 377 B LEU 378 n 121 LEU 378 B THR 379 n 122 THR 379 B ILE 380 n 123 ILE 380 B LYS 381 n 124 LYS 381 B GLU 382 n 125 GLU 382 B ASP 383 n 126 ASP 383 B LYS 384 n 127 LYS 384 B GLY 385 n 128 GLY 385 B THR 386 n 129 THR 386 B GLY 387 n 130 GLY 387 B VAL 388 n 131 VAL 388 B VAL 389 n 132 VAL 389 B THR 390 n 133 THR 390 B SER 391 n 134 SER 391 B VAL 392 n 135 VAL 392 B PRO 393 n 136 PRO 393 B SER 394 n 137 SER 394 B ASP 395 n 138 ASP 395 B SER 396 n 139 SER 396 B PRO 397 n 140 PRO 397 B ASP 398 n 141 ASP 398 B ASP 399 n 142 ASP 399 B ILE 400 n 143 ILE 400 B ALA 401 n 144 ALA 401 B ALA 402 n 145 ALA 402 B LEU 403 n 146 LEU 403 B ARG 404 n 147 ARG 404 B ASP 405 n 148 ASP 405 B LEU 406 n 149 LEU 406 B LYS 407 n 150 LYS 407 B LYS 408 n 151 LYS 408 B LYS 409 n 152 LYS 409 B GLN 410 n 153 GLN 410 B ALA 411 n 154 ALA 411 B LEU 412 n 155 LEU 412 B ARG 413 n 156 ARG 413 B ALA 414 n 157 ALA 414 B LYS 415 n 158 LYS 415 B TYR 416 n 159 TYR 416 B GLY 417 n 160 GLY 417 B ILE 418 n 161 ILE 418 B ARG 419 n 162 ARG 419 B ASP 420 n 163 ASP 420 B ASP 421 n 164 ASP 421 B MSE 422 n 165 MSE 422 B VAL 423 n 166 VAL 423 B LEU 424 n 167 LEU 424 B PRO 425 n 168 PRO 425 B PHE 426 n 169 PHE 426 B GLU 427 n 170 GLU 427 B PRO 428 n 171 PRO 428 B VAL 429 n 172 VAL 429 B PRO 430 n 173 PRO 430 B VAL 431 n 174 VAL 431 B ILE 432 n 175 ILE 432 B GLU 433 n 176 GLU 433 B ILE 434 n 177 ILE 434 B PRO 435 n 178 PRO 435 B GLY 436 n 179 GLY 436 B PHE 437 n 180 PHE 437 B GLY 438 n 181 GLY 438 B ASN 439 n 182 ASN 439 B LEU 440 n 183 LEU 440 B SER 441 n 184 SER 441 B ALA 442 n 185 ALA 442 B VAL 443 n 186 VAL 443 B THR 444 n 187 THR 444 B ILE 445 n 188 ILE 445 B CYS 446 n 189 CYS 446 B ASP 447 n 190 ASP 447 B GLU 448 n 191 GLU 448 B LEU 449 n 192 LEU 449 B LYS 450 n 193 LYS 450 B ILE 451 n 194 ILE 451 B GLN 452 n 195 GLN 452 B SER 453 n 196 SER 453 B GLN 454 n 197 GLN 454 B ASN 455 n 198 ASN 455 B ASP 456 n 199 ASP 456 B ARG 457 n 200 ARG 457 B GLU 458 n 201 GLU 458 B LYS 459 n 202 LYS 459 B LEU 460 n 203 LEU 460 B ALA 461 n 204 ALA 461 B GLU 462 n 205 GLU 462 B ALA 463 n 206 ALA 463 B LYS 464 n 207 LYS 464 B GLU 465 n 208 GLU 465 B LYS 466 n 209 LYS 466 B ILE 467 n 210 ILE 467 B TYR 468 n 211 TYR 468 B LEU 469 n 212 LEU 469 B LYS 470 n 213 LYS 470 B GLY 471 n 214 GLY 471 B PHE 472 n 215 PHE 472 B TYR 473 n 216 TYR 473 B GLU 474 n 217 GLU 474 B GLY 475 n 218 GLY 475 B ILE 476 n 219 ILE 476 B MSE 477 n 220 MSE 477 B LEU 478 n 221 LEU 478 B VAL 479 n 222 VAL 479 B ASP 480 n 223 ASP 480 B GLY 481 n 224 GLY 481 B PHE 482 n 225 PHE 482 B LYS 483 n 226 LYS 483 B GLY 484 n 227 GLY 484 B GLN 485 n 228 GLN 485 B LYS 486 n 229 LYS 486 B VAL 487 n 230 VAL 487 B GLN 488 n 231 GLN 488 B ASP 489 n 232 ASP 489 B VAL 490 n 233 VAL 490 B LYS 491 n 234 LYS 491 B LYS 492 n 235 LYS 492 B THR 493 n 236 THR 493 B ILE 494 n 237 ILE 494 B GLN 495 n 238 GLN 495 B LYS 496 n 239 LYS 496 B LYS 497 n 240 LYS 497 B MSE 498 n 241 MSE 498 B ILE 499 n 242 ILE 499 B ASP 500 n 243 ASP 500 B ALA 501 n 244 ALA 501 B GLY 502 n 245 GLY 502 B ASP 503 n 246 ASP 503 B ALA 504 n 247 ALA 504 B LEU 505 n 248 LEU 505 B ILE 506 n 249 ILE 506 B TYR 507 n 250 TYR 507 B MSE 508 n 251 MSE 508 B GLU 509 n 252 GLU 509 B 4.2893 2.3531 0.2890 1.6841 0.0995 1.6987 0.0355 -0.2551 0.1820 0.1789 -0.0285 0.0712 -0.1952 -0.1560 -0.0069 -0.2567 -0.0346 0.0132 -0.0849 -0.0633 -0.2320 refined 25.2490 -37.7950 -15.7780 X-RAY DIFFRACTION 3.9546 1.5832 -0.9927 1.7456 -0.1080 4.1614 -0.0754 0.5118 0.0413 -0.1161 0.0261 0.2995 0.2456 -1.0905 0.0493 -0.2598 -0.1087 0.0193 -0.0426 -0.0400 -0.1828 refined 27.4800 -37.8330 -48.7140 X-RAY DIFFRACTION A 258 A 509 X-RAY DIFFRACTION 1 B 258 B 509 X-RAY DIFFRACTION 2 author_and_software_defined_assembly PISA 2 dimeric 2700 -18.93 21880 A MSE 259 SELENOMETHIONINE A MSE 2 MET A MSE 299 SELENOMETHIONINE A MSE 42 MET A MSE 311 SELENOMETHIONINE A MSE 54 MET A MSE 334 SELENOMETHIONINE A MSE 77 MET A MSE 353 SELENOMETHIONINE A MSE 96 MET A MSE 377 SELENOMETHIONINE A MSE 120 MET A MSE 422 SELENOMETHIONINE A MSE 165 MET A MSE 477 SELENOMETHIONINE A MSE 220 MET A MSE 498 SELENOMETHIONINE A MSE 241 MET A MSE 508 SELENOMETHIONINE A MSE 251 MET B MSE 259 SELENOMETHIONINE B MSE 2 MET B MSE 299 SELENOMETHIONINE B MSE 42 MET B MSE 311 SELENOMETHIONINE B MSE 54 MET B MSE 334 SELENOMETHIONINE B MSE 77 MET B MSE 353 SELENOMETHIONINE B MSE 96 MET B MSE 377 SELENOMETHIONINE B MSE 120 MET B MSE 422 SELENOMETHIONINE B MSE 165 MET B MSE 477 SELENOMETHIONINE B MSE 220 MET B MSE 498 SELENOMETHIONINE B MSE 241 MET B MSE 508 SELENOMETHIONINE B MSE 251 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 349 A N VAL 92 A O GLY 315 A O GLY 58 A N PHE 316 A N PHE 59 A O PHE 324 A O PHE 67 A N ILE 325 A N ILE 68 A O PHE 288 A O PHE 31 A N THR 293 A N THR 36 A O THR 265 A O THR 8 A N LEU 266 A N LEU 9 A O LEU 505 A O LEU 248 A N VAL 349 A N VAL 92 A O GLY 315 A O GLY 58 A N PHE 316 A N PHE 59 A O PHE 324 A O PHE 67 A N ILE 325 A N ILE 68 A O PHE 288 A O PHE 31 A N THR 293 A N THR 36 A O THR 265 A O THR 8 A N LEU 272 A N LEU 15 A O SER 361 A O SER 104 A N LEU 362 A N LEU 105 A O ILE 372 A O ILE 115 A N LEU 375 A N LEU 118 A O CYS 305 A O CYS 48 A N TRP 306 A N TRP 49 A O VAL 389 A O VAL 132 B N VAL 349 B N VAL 92 B O GLY 315 B O GLY 58 B N PHE 316 B N PHE 59 B O PHE 324 B O PHE 67 B N ILE 325 B N ILE 68 B O PHE 288 B O PHE 31 B N THR 293 B N THR 36 B O THR 265 B O THR 8 B N LEU 266 B N LEU 9 B O LEU 505 B O LEU 248 B N VAL 349 B N VAL 92 B O GLY 315 B O GLY 58 B N PHE 316 B N PHE 59 B O PHE 324 B O PHE 67 B N ILE 325 B N ILE 68 B O PHE 288 B O PHE 31 B N THR 293 B N THR 36 B O THR 265 B O THR 8 B N LEU 272 B N LEU 15 B O SER 361 B O SER 104 B N LEU 362 B N LEU 105 B O ILE 372 B O ILE 115 B N LEU 375 B N LEU 118 B O CYS 305 B O CYS 48 B N TRP 306 B N TRP 49 B O VAL 389 B O VAL 132 1 A MSE 259 65.10 -161.32 1 A MSE 299 -69.61 2.40 1 A ASN 304 -173.30 -164.17 1 A CYS 326 -171.40 -172.89 1 A LEU 366 69.23 -54.74 1 A ASP 383 -69.01 -80.31 1 A VAL 423 -130.99 -56.10 1 A LYS 450 64.77 64.59 1 A ASN 455 -86.85 31.92 1 A ASP 456 -105.26 54.62 1 A PHE 482 -167.39 69.76 1 B MSE 259 67.27 -161.51 1 B MSE 299 -68.85 1.37 1 B ASN 304 -172.13 -165.17 1 B CYS 326 -172.08 -174.25 1 B LEU 366 68.24 -56.19 1 B ASP 383 -69.67 -74.99 1 B ALA 402 -61.69 -71.88 1 B ASP 421 -17.22 -44.45 1 B VAL 423 -142.26 -66.97 1 B ASN 455 -87.68 30.27 1 B ASP 456 -104.79 57.76 1 B PHE 482 -165.17 71.07 0.920 0.894 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES RESIDUAL ONLY 0.240 0.202 0.204 3.25 29.24 612 11198 5.200 100.0 50.954 0.378 RANDOM 1 THROUGHOUT SAD 0.471 0.80 0.80 1.40 NONE MAXIMUM LIKELIHOOD MASK 3.25 29.24 0 3922 0 0 3922 0.010 0.022 3990 0.001 0.020 2788 1.318 2.004 5380 0.852 3.000 6886 6.816 5.000 502 43.273 25.526 152 17.806 15.000 770 17.321 15.000 14 0.069 0.200 614 0.004 0.021 4318 0.001 0.020 710 0.336 1.500 2508 0.043 1.500 1018 0.650 2.000 4064 0.943 3.000 1482 1.571 4.500 1316 1 A 1 3019 X-RAY DIFFRACTION tight positional 0.03 0.05 2 B 1 3019 X-RAY DIFFRACTION tight positional 0.03 0.05 1 A 1 3019 X-RAY DIFFRACTION tight thermal 0.88 5.00 2 B 1 3019 X-RAY DIFFRACTION tight thermal 0.88 5.00 0.2500 0.3000 3.33 46 812 20 100.00 3.00 30.00 2WFD 15008 0.0 0.15 1 7.46 3.12 99.8 0.66 3.25 3.30 1.98 1 3.16 99.5 refinement REFMAC 5.5.0070 data reduction XDS data scaling XSCALE phasing SHELXD SHARP LEUCYL-TRNA SYNTHETASE, CYTOPLASMIC (E.C.6.1.1.4) Structure of the human cytosolic leucyl-tRNA synthetase editing domain 1 N N 1 N N A PRO 276 A PRO 19 HELX_P A LYS 283 A LYS 26 5 1 8 A ARG 295 A ARG 38 HELX_P A MSE 299 A MSE 42 5 2 5 A THR 327 A THR 70 HELX_P A MSE 334 A MSE 77 1 3 8 A SER 396 A SER 139 HELX_P A LYS 409 A LYS 152 1 4 14 A GLN 410 A GLN 153 HELX_P A LYS 415 A LYS 158 1 5 6 A LEU 440 A LEU 183 HELX_P A LEU 449 A LEU 192 1 6 10 A ASP 456 A ASP 199 HELX_P A GLY 475 A GLY 218 1 7 20 A LYS 486 A LYS 229 HELX_P A MSE 498 A MSE 241 1 8 13 B PRO 276 B PRO 19 HELX_P B LYS 283 B LYS 26 5 9 8 B ARG 295 B ARG 38 HELX_P B MSE 299 B MSE 42 5 10 5 B THR 327 B THR 70 HELX_P B MSE 334 B MSE 77 1 11 8 B SER 396 B SER 139 HELX_P B LYS 409 B LYS 152 1 12 14 B LYS 409 B LYS 152 HELX_P B ALA 414 B ALA 157 1 13 6 B LYS 415 B LYS 158 HELX_P B GLY 417 B GLY 160 5 14 3 B LEU 440 B LEU 183 HELX_P B LEU 449 B LEU 192 1 15 10 B ASP 456 B ASP 199 HELX_P B GLY 475 B GLY 218 1 16 20 B LYS 486 B LYS 229 HELX_P B MSE 498 B MSE 241 1 17 13 covale 1.346 A ALA 258 A C ALA 1 1_555 A MSE 259 A N MSE 2 1_555 covale 1.332 A MSE 259 A C MSE 2 1_555 A GLY 260 A N GLY 3 1_555 covale 1.330 A THR 298 A C THR 41 1_555 A MSE 299 A N MSE 42 1_555 covale 1.332 A MSE 299 A C MSE 42 1_555 A PHE 300 A N PHE 43 1_555 covale 1.328 A ASP 310 A C ASP 53 1_555 A MSE 311 A N MSE 54 1_555 covale 1.332 A MSE 311 A C MSE 54 1_555 A LYS 312 A N LYS 55 1_555 covale 1.328 A ASN 333 A C ASN 76 1_555 A MSE 334 A N MSE 77 1_555 covale 1.330 A MSE 334 A C MSE 77 1_555 A SER 335 A N SER 78 1_555 covale 1.330 A LEU 352 A C LEU 95 1_555 A MSE 353 A N MSE 96 1_555 covale 1.324 A MSE 353 A C MSE 96 1_555 A GLY 354 A N GLY 97 1_555 covale 1.332 A PRO 376 A C PRO 119 1_555 A MSE 377 A N MSE 120 1_555 covale 1.324 A MSE 377 A C MSE 120 1_555 A LEU 378 A N LEU 121 1_555 covale 1.338 A ASP 421 A C ASP 164 1_555 A MSE 422 A N MSE 165 1_555 covale 1.334 A MSE 422 A C MSE 165 1_555 A VAL 423 A N VAL 166 1_555 covale 1.329 A ILE 476 A C ILE 219 1_555 A MSE 477 A N MSE 220 1_555 covale 1.333 A MSE 477 A C MSE 220 1_555 A LEU 478 A N LEU 221 1_555 covale 1.325 A LYS 497 A C LYS 240 1_555 A MSE 498 A N MSE 241 1_555 covale 1.328 A MSE 498 A C MSE 241 1_555 A ILE 499 A N ILE 242 1_555 covale 1.327 A TYR 507 A C TYR 250 1_555 A MSE 508 A N MSE 251 1_555 covale 1.331 A MSE 508 A C MSE 251 1_555 A GLU 509 A N GLU 252 1_555 covale 1.337 B ALA 258 B C ALA 1 1_555 B MSE 259 B N MSE 2 1_555 covale 1.325 B MSE 259 B C MSE 2 1_555 B GLY 260 B N GLY 3 1_555 covale 1.325 B THR 298 B C THR 41 1_555 B MSE 299 B N MSE 42 1_555 covale 1.326 B MSE 299 B C MSE 42 1_555 B PHE 300 B N PHE 43 1_555 covale 1.325 B ASP 310 B C ASP 53 1_555 B MSE 311 B N MSE 54 1_555 covale 1.331 B MSE 311 B C MSE 54 1_555 B LYS 312 B N LYS 55 1_555 covale 1.325 B ASN 333 B C ASN 76 1_555 B MSE 334 B N MSE 77 1_555 covale 1.331 B MSE 334 B C MSE 77 1_555 B SER 335 B N SER 78 1_555 covale 1.326 B LEU 352 B C LEU 95 1_555 B MSE 353 B N MSE 96 1_555 covale 1.322 B MSE 353 B C MSE 96 1_555 B GLY 354 B N GLY 97 1_555 covale 1.336 B PRO 376 B C PRO 119 1_555 B MSE 377 B N MSE 120 1_555 covale 1.327 B MSE 377 B C MSE 120 1_555 B LEU 378 B N LEU 121 1_555 covale 1.336 B ASP 421 B C ASP 164 1_555 B MSE 422 B N MSE 165 1_555 covale 1.333 B MSE 422 B C MSE 165 1_555 B VAL 423 B N VAL 166 1_555 covale 1.338 B ILE 476 B C ILE 219 1_555 B MSE 477 B N MSE 220 1_555 covale 1.330 B MSE 477 B C MSE 220 1_555 B LEU 478 B N LEU 221 1_555 covale 1.325 B LYS 497 B C LYS 240 1_555 B MSE 498 B N MSE 241 1_555 covale 1.327 B MSE 498 B C MSE 241 1_555 B ILE 499 B N ILE 242 1_555 covale 1.326 B TYR 507 B C TYR 250 1_555 B MSE 508 B N MSE 251 1_555 covale 1.333 B MSE 508 B C MSE 251 1_555 B GLU 509 B N GLU 252 1_555 LIGASE AMINOACYL-TRNA SYNTHETASE, PHOSPHOPROTEIN, EDITING DOMAIN, NUCLEOTIDE-BINDING, HYDROLYSIS OF MIS-CHARGED TRNAS, PROTEIN BIOSYNTHESIS, LEUCYL-TRNA SYNTHETASE, HUMAN, LIGASE, CYTOPLASM, ATP-BINDING, POLYMORPHISM A GLY 260 A GLY 3 1 A PRO 261 A PRO 4 12.92 A GLU 273 A GLU 16 1 A PRO 274 A PRO 17 10.38 B GLY 260 B GLY 3 1 B PRO 261 B PRO 4 11.69 B GLU 273 B GLU 16 1 B PRO 274 B PRO 17 10.82 A B A 258 A 401 1 B 258 B 401 1 A 425 A 509 1 B 425 B 509 1 2WFD PDB 1 2WFD SYLC_HUMAN UNP 1 Q9P2J5 258 259 2WFD 258 259 2WFD A 1 1 2 260 509 2WFD 260 509 Q9P2J5 A 2 3 252 258 259 2WFD 258 259 2WFD B 1 1 2 260 509 2WFD 260 509 Q9P2J5 B 2 3 252 6 9 6 9 anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel A VAL 348 A VAL 91 A GLU 351 A GLU 94 A ILE 314 A ILE 57 A GLU 317 A GLU 60 A ILE 323 A ILE 66 A CYS 326 A CYS 69 A ILE 287 A ILE 30 A THR 293 A THR 36 A TYR 264 A TYR 7 A LEU 272 A LEU 15 A ALA 504 A ALA 247 A TYR 507 A TYR 250 A VAL 348 A VAL 91 A GLU 351 A GLU 94 A ILE 314 A ILE 57 A GLU 317 A GLU 60 A ILE 323 A ILE 66 A CYS 326 A CYS 69 A ILE 287 A ILE 30 A THR 293 A THR 36 A TYR 264 A TYR 7 A LEU 272 A LEU 15 A SER 361 A SER 104 A SER 363 A SER 106 A ILE 372 A ILE 115 A PRO 376 A PRO 119 A ASN 304 A ASN 47 A VAL 307 A VAL 50 A VAL 389 A VAL 132 A SER 391 A SER 134 B VAL 348 B VAL 91 B GLU 351 B GLU 94 B ILE 314 B ILE 57 B GLU 317 B GLU 60 B ILE 323 B ILE 66 B CYS 326 B CYS 69 B ILE 287 B ILE 30 B THR 293 B THR 36 B TYR 264 B TYR 7 B LEU 272 B LEU 15 B ALA 504 B ALA 247 B TYR 507 B TYR 250 B VAL 348 B VAL 91 B GLU 351 B GLU 94 B ILE 314 B ILE 57 B GLU 317 B GLU 60 B ILE 323 B ILE 66 B CYS 326 B CYS 69 B ILE 287 B ILE 30 B THR 293 B THR 36 B TYR 264 B TYR 7 B LEU 272 B LEU 15 B SER 361 B SER 104 B SER 363 B SER 106 B ILE 372 B ILE 115 B PRO 376 B PRO 119 B ASN 304 B ASN 47 B VAL 307 B VAL 50 B VAL 389 B VAL 132 B SER 391 B SER 134 170 P 65