0.023245
0.000000
0.000000
0.000000
0.017229
0.000000
0.000000
0.000000
0.010251
0.00000
0.00000
0.00000
Seiradake, E.
Mao, W.
Hernandez, V.
Baker, S.J.
Plattner, J.J.
Alley, M.R.K.
Cusack, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
43.020
58.040
97.550
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
C19 H22 B F N6 O8 P -1
523.197
[(1S,3S,5R,6R,8R)-6-(6-AMINOPURIN-9-YL)-4'-ETHYLAMINO-3'-FLUORO-SPIRO[2,4,7-TRIOXA-3-BORANUIDABICYCLO[3.3.0]OCTANE-3,7'-8-OXA-7-BORANUIDABICYCLO[4.3.0]NONA-1,3,5-TRIENE]-8-YL]METHYL DIHYDROGEN PHOSPHATE
non-polymer
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
390
196
10.1016/J.JMB.2009.04.073
19426743
Crystal Structures of the Human and Fungal Cytosolic Leucyl-tRNA Synthetase Editing Domains: A Structural Basis for the Rational Design of Antifungal Benzoxaboroles.
2009
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
ADSC CCD
SINGLE WAVELENGTH
M
x-ray
1
0.934
1.0
ID14-1
ESRF
0.934
SYNCHROTRON
ESRF BEAMLINE ID14-1
29496.615
CYTOSOLIC LEUCYL-TRNA SYNTHETASE
EDITING OR CP1 DOMAIN, RESIDUES 280-530
1
man
polymer
523.197
[(1S,3S,5R,6R,8R)-6-(6-AMINOPURIN-9-YL)-4'-ETHYLAMINO-3'-FLUORO-SPIRO[2,4,7-TRIOXA-3-BORANUIDABICYCLO[3.3.0]OCTANE-3,7'-8-OXA-7-BORANUIDABICYCLO[4.3.0]NONA-1,3,5-TRIENE]-8-YL]METHYL DIHYDROGEN PHOSPHATE
1
syn
non-polymer
18.015
water
247
nat
water
no
no
MGYVGIKIRLTDVAPQAQELFKKESLDVKENKVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAGNGDYFITTERAFKNM
SFQNLTPKRGYYKPLFTINGKTLIGSRIDAPYAVNKNLRVLPMETVLATKGTGVVTCVPSDSPDDFVTTRDLANKPEYYG
IEKDWVQTDIVPIVHTEKYGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVEDAKPKVKQDL
IDEGLAFVYNEPELEHHHHHH
MGYVGIKIRLTDVAPQAQELFKKESLDVKENKVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAGNGDYFITTERAFKNM
SFQNLTPKRGYYKPLFTINGKTLIGSRIDAPYAVNKNLRVLPMETVLATKGTGVVTCVPSDSPDDFVTTRDLANKPEYYG
IEKDWVQTDIVPIVHTEKYGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVEDAKPKVKQDL
IDEGLAFVYNEPELEHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
5476
CANDIDA ALBICANS
316385
ESCHERICHIA COLI
DH10B
10G
PET21D
2.3
41.1
NONE
0.2 M SODIUM ACETATE, 0.1 M SODIUM CACODYLATE PH 6.5, 30 % PEG 8000
repository
Initial release
Version format compliance
Version format compliance
1
0
2009-05-19
1
1
2011-05-08
1
2
2011-07-13
STRUCTURE OF THE CANDIDA ALBICANS CYTOSOLIC LEUCYL-TRNA SYNTHETASE EDITING DOMAIN
SHEET
THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN
ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW,
TWO SHEETS ARE DEFINED.
PDBE
Y
PDBE
2009-04-05
REL
1
A
O
HOH
2116
5.84
1
A
O
HOH
2138
8.04
ZZB
[(1S,3S,5R,6R,8R)-6-(6-AMINOPURIN-9-YL)-4'-ETHYLAMINO-3'-FLUORO-SPIRO[2,4,7-TRIOXA-3-BORANUIDABICYCLO[3.3.0]OCTANE-3,7'-8-OXA-7-BORANUIDABICYCLO[4.3.0]NONA-1,3,5-TRIENE]-8-YL]METHYL DIHYDROGEN PHOSPHATE
HOH
water
AN3018-AMP ADDUCT (ZZB): AN3018 IS
6-ETHYLAMINO-5-FLUOROBENZO-C-1,2-OXABOROL-1-3H-OL
ZZB
1529
2
ZZB
ZZB
1529
A
HOH
2001
3
HOH
HOH
2001
A
HOH
2002
3
HOH
HOH
2002
A
HOH
2003
3
HOH
HOH
2003
A
HOH
2004
3
HOH
HOH
2004
A
HOH
2005
3
HOH
HOH
2005
A
HOH
2006
3
HOH
HOH
2006
A
HOH
2007
3
HOH
HOH
2007
A
HOH
2008
3
HOH
HOH
2008
A
HOH
2009
3
HOH
HOH
2009
A
HOH
2010
3
HOH
HOH
2010
A
HOH
2011
3
HOH
HOH
2011
A
HOH
2012
3
HOH
HOH
2012
A
HOH
2013
3
HOH
HOH
2013
A
HOH
2014
3
HOH
HOH
2014
A
HOH
2015
3
HOH
HOH
2015
A
HOH
2016
3
HOH
HOH
2016
A
HOH
2017
3
HOH
HOH
2017
A
HOH
2018
3
HOH
HOH
2018
A
HOH
2019
3
HOH
HOH
2019
A
HOH
2020
3
HOH
HOH
2020
A
HOH
2021
3
HOH
HOH
2021
A
HOH
2022
3
HOH
HOH
2022
A
HOH
2023
3
HOH
HOH
2023
A
HOH
2024
3
HOH
HOH
2024
A
HOH
2025
3
HOH
HOH
2025
A
HOH
2026
3
HOH
HOH
2026
A
HOH
2027
3
HOH
HOH
2027
A
HOH
2028
3
HOH
HOH
2028
A
HOH
2029
3
HOH
HOH
2029
A
HOH
2030
3
HOH
HOH
2030
A
HOH
2031
3
HOH
HOH
2031
A
HOH
2032
3
HOH
HOH
2032
A
HOH
2033
3
HOH
HOH
2033
A
HOH
2034
3
HOH
HOH
2034
A
HOH
2035
3
HOH
HOH
2035
A
HOH
2036
3
HOH
HOH
2036
A
HOH
2037
3
HOH
HOH
2037
A
HOH
2038
3
HOH
HOH
2038
A
HOH
2039
3
HOH
HOH
2039
A
HOH
2040
3
HOH
HOH
2040
A
HOH
2041
3
HOH
HOH
2041
A
HOH
2042
3
HOH
HOH
2042
A
HOH
2043
3
HOH
HOH
2043
A
HOH
2044
3
HOH
HOH
2044
A
HOH
2045
3
HOH
HOH
2045
A
HOH
2046
3
HOH
HOH
2046
A
HOH
2047
3
HOH
HOH
2047
A
HOH
2048
3
HOH
HOH
2048
A
HOH
2049
3
HOH
HOH
2049
A
HOH
2050
3
HOH
HOH
2050
A
HOH
2051
3
HOH
HOH
2051
A
HOH
2052
3
HOH
HOH
2052
A
HOH
2053
3
HOH
HOH
2053
A
HOH
2054
3
HOH
HOH
2054
A
HOH
2055
3
HOH
HOH
2055
A
HOH
2056
3
HOH
HOH
2056
A
HOH
2057
3
HOH
HOH
2057
A
HOH
2058
3
HOH
HOH
2058
A
HOH
2059
3
HOH
HOH
2059
A
HOH
2060
3
HOH
HOH
2060
A
HOH
2061
3
HOH
HOH
2061
A
HOH
2062
3
HOH
HOH
2062
A
HOH
2063
3
HOH
HOH
2063
A
HOH
2064
3
HOH
HOH
2064
A
HOH
2065
3
HOH
HOH
2065
A
HOH
2066
3
HOH
HOH
2066
A
HOH
2067
3
HOH
HOH
2067
A
HOH
2068
3
HOH
HOH
2068
A
HOH
2069
3
HOH
HOH
2069
A
HOH
2070
3
HOH
HOH
2070
A
HOH
2071
3
HOH
HOH
2071
A
HOH
2072
3
HOH
HOH
2072
A
HOH
2073
3
HOH
HOH
2073
A
HOH
2074
3
HOH
HOH
2074
A
HOH
2075
3
HOH
HOH
2075
A
HOH
2076
3
HOH
HOH
2076
A
HOH
2077
3
HOH
HOH
2077
A
HOH
2078
3
HOH
HOH
2078
A
HOH
2079
3
HOH
HOH
2079
A
HOH
2080
3
HOH
HOH
2080
A
HOH
2081
3
HOH
HOH
2081
A
HOH
2082
3
HOH
HOH
2082
A
HOH
2083
3
HOH
HOH
2083
A
HOH
2084
3
HOH
HOH
2084
A
HOH
2085
3
HOH
HOH
2085
A
HOH
2086
3
HOH
HOH
2086
A
HOH
2087
3
HOH
HOH
2087
A
HOH
2088
3
HOH
HOH
2088
A
HOH
2089
3
HOH
HOH
2089
A
HOH
2090
3
HOH
HOH
2090
A
HOH
2091
3
HOH
HOH
2091
A
HOH
2092
3
HOH
HOH
2092
A
HOH
2093
3
HOH
HOH
2093
A
HOH
2094
3
HOH
HOH
2094
A
HOH
2095
3
HOH
HOH
2095
A
HOH
2096
3
HOH
HOH
2096
A
HOH
2097
3
HOH
HOH
2097
A
HOH
2098
3
HOH
HOH
2098
A
HOH
2099
3
HOH
HOH
2099
A
HOH
2100
3
HOH
HOH
2100
A
HOH
2101
3
HOH
HOH
2101
A
HOH
2102
3
HOH
HOH
2102
A
HOH
2103
3
HOH
HOH
2103
A
HOH
2104
3
HOH
HOH
2104
A
HOH
2105
3
HOH
HOH
2105
A
HOH
2106
3
HOH
HOH
2106
A
HOH
2107
3
HOH
HOH
2107
A
HOH
2108
3
HOH
HOH
2108
A
HOH
2109
3
HOH
HOH
2109
A
HOH
2110
3
HOH
HOH
2110
A
HOH
2111
3
HOH
HOH
2111
A
HOH
2112
3
HOH
HOH
2112
A
HOH
2113
3
HOH
HOH
2113
A
HOH
2114
3
HOH
HOH
2114
A
HOH
2115
3
HOH
HOH
2115
A
HOH
2116
3
HOH
HOH
2116
A
HOH
2117
3
HOH
HOH
2117
A
HOH
2118
3
HOH
HOH
2118
A
HOH
2119
3
HOH
HOH
2119
A
HOH
2120
3
HOH
HOH
2120
A
HOH
2121
3
HOH
HOH
2121
A
HOH
2122
3
HOH
HOH
2122
A
HOH
2123
3
HOH
HOH
2123
A
HOH
2124
3
HOH
HOH
2124
A
HOH
2125
3
HOH
HOH
2125
A
HOH
2126
3
HOH
HOH
2126
A
HOH
2127
3
HOH
HOH
2127
A
HOH
2128
3
HOH
HOH
2128
A
HOH
2129
3
HOH
HOH
2129
A
HOH
2130
3
HOH
HOH
2130
A
HOH
2131
3
HOH
HOH
2131
A
HOH
2132
3
HOH
HOH
2132
A
HOH
2133
3
HOH
HOH
2133
A
HOH
2134
3
HOH
HOH
2134
A
HOH
2135
3
HOH
HOH
2135
A
HOH
2136
3
HOH
HOH
2136
A
HOH
2137
3
HOH
HOH
2137
A
HOH
2138
3
HOH
HOH
2138
A
HOH
2139
3
HOH
HOH
2139
A
HOH
2140
3
HOH
HOH
2140
A
HOH
2141
3
HOH
HOH
2141
A
HOH
2142
3
HOH
HOH
2142
A
HOH
2143
3
HOH
HOH
2143
A
HOH
2144
3
HOH
HOH
2144
A
HOH
2145
3
HOH
HOH
2145
A
HOH
2146
3
HOH
HOH
2146
A
HOH
2147
3
HOH
HOH
2147
A
HOH
2148
3
HOH
HOH
2148
A
HOH
2149
3
HOH
HOH
2149
A
HOH
2150
3
HOH
HOH
2150
A
HOH
2151
3
HOH
HOH
2151
A
HOH
2152
3
HOH
HOH
2152
A
HOH
2153
3
HOH
HOH
2153
A
HOH
2154
3
HOH
HOH
2154
A
HOH
2155
3
HOH
HOH
2155
A
HOH
2156
3
HOH
HOH
2156
A
HOH
2157
3
HOH
HOH
2157
A
HOH
2158
3
HOH
HOH
2158
A
HOH
2159
3
HOH
HOH
2159
A
HOH
2160
3
HOH
HOH
2160
A
HOH
2161
3
HOH
HOH
2161
A
HOH
2162
3
HOH
HOH
2162
A
HOH
2163
3
HOH
HOH
2163
A
HOH
2164
3
HOH
HOH
2164
A
HOH
2165
3
HOH
HOH
2165
A
HOH
2166
3
HOH
HOH
2166
A
HOH
2167
3
HOH
HOH
2167
A
HOH
2168
3
HOH
HOH
2168
A
HOH
2169
3
HOH
HOH
2169
A
HOH
2170
3
HOH
HOH
2170
A
HOH
2171
3
HOH
HOH
2171
A
HOH
2172
3
HOH
HOH
2172
A
HOH
2173
3
HOH
HOH
2173
A
HOH
2174
3
HOH
HOH
2174
A
HOH
2175
3
HOH
HOH
2175
A
HOH
2176
3
HOH
HOH
2176
A
HOH
2177
3
HOH
HOH
2177
A
HOH
2178
3
HOH
HOH
2178
A
HOH
2179
3
HOH
HOH
2179
A
HOH
2180
3
HOH
HOH
2180
A
HOH
2181
3
HOH
HOH
2181
A
HOH
2182
3
HOH
HOH
2182
A
HOH
2183
3
HOH
HOH
2183
A
HOH
2184
3
HOH
HOH
2184
A
HOH
2185
3
HOH
HOH
2185
A
HOH
2186
3
HOH
HOH
2186
A
HOH
2187
3
HOH
HOH
2187
A
HOH
2188
3
HOH
HOH
2188
A
HOH
2189
3
HOH
HOH
2189
A
HOH
2190
3
HOH
HOH
2190
A
HOH
2191
3
HOH
HOH
2191
A
HOH
2192
3
HOH
HOH
2192
A
HOH
2193
3
HOH
HOH
2193
A
HOH
2194
3
HOH
HOH
2194
A
HOH
2195
3
HOH
HOH
2195
A
HOH
2196
3
HOH
HOH
2196
A
HOH
2197
3
HOH
HOH
2197
A
HOH
2198
3
HOH
HOH
2198
A
HOH
2199
3
HOH
HOH
2199
A
HOH
2200
3
HOH
HOH
2200
A
HOH
2201
3
HOH
HOH
2201
A
HOH
2202
3
HOH
HOH
2202
A
HOH
2203
3
HOH
HOH
2203
A
HOH
2204
3
HOH
HOH
2204
A
HOH
2205
3
HOH
HOH
2205
A
HOH
2206
3
HOH
HOH
2206
A
HOH
2207
3
HOH
HOH
2207
A
HOH
2208
3
HOH
HOH
2208
A
HOH
2209
3
HOH
HOH
2209
A
HOH
2210
3
HOH
HOH
2210
A
HOH
2211
3
HOH
HOH
2211
A
HOH
2212
3
HOH
HOH
2212
A
HOH
2213
3
HOH
HOH
2213
A
HOH
2214
3
HOH
HOH
2214
A
HOH
2215
3
HOH
HOH
2215
A
HOH
2216
3
HOH
HOH
2216
A
HOH
2217
3
HOH
HOH
2217
A
HOH
2218
3
HOH
HOH
2218
A
HOH
2219
3
HOH
HOH
2219
A
HOH
2220
3
HOH
HOH
2220
A
HOH
2221
3
HOH
HOH
2221
A
HOH
2222
3
HOH
HOH
2222
A
HOH
2223
3
HOH
HOH
2223
A
HOH
2224
3
HOH
HOH
2224
A
HOH
2225
3
HOH
HOH
2225
A
HOH
2226
3
HOH
HOH
2226
A
HOH
2227
3
HOH
HOH
2227
A
HOH
2228
3
HOH
HOH
2228
A
HOH
2229
3
HOH
HOH
2229
A
HOH
2230
3
HOH
HOH
2230
A
HOH
2231
3
HOH
HOH
2231
A
HOH
2232
3
HOH
HOH
2232
A
HOH
2233
3
HOH
HOH
2233
A
HOH
2234
3
HOH
HOH
2234
A
HOH
2235
3
HOH
HOH
2235
A
HOH
2236
3
HOH
HOH
2236
A
HOH
2237
3
HOH
HOH
2237
A
HOH
2238
3
HOH
HOH
2238
A
HOH
2239
3
HOH
HOH
2239
A
HOH
2240
3
HOH
HOH
2240
A
HOH
2241
3
HOH
HOH
2241
A
HOH
2242
3
HOH
HOH
2242
A
HOH
2243
3
HOH
HOH
2243
A
HOH
2244
3
HOH
HOH
2244
A
HOH
2245
3
HOH
HOH
2245
A
HOH
2246
3
HOH
HOH
2246
A
HOH
2247
3
HOH
HOH
2247
A
n
1
278
A
GLY
279
n
2
GLY
279
A
TYR
280
n
3
TYR
280
A
VAL
281
n
4
VAL
281
A
GLY
282
n
5
GLY
282
A
ILE
283
n
6
ILE
283
A
LYS
284
n
7
LYS
284
A
ILE
285
n
8
ILE
285
A
ARG
286
n
9
ARG
286
A
LEU
287
n
10
LEU
287
A
THR
288
n
11
THR
288
A
ASP
289
n
12
ASP
289
A
VAL
290
n
13
VAL
290
A
ALA
291
n
14
ALA
291
A
PRO
292
n
15
PRO
292
A
GLN
293
n
16
GLN
293
A
ALA
294
n
17
ALA
294
A
GLN
295
n
18
GLN
295
A
GLU
296
n
19
GLU
296
A
LEU
297
n
20
LEU
297
A
PHE
298
n
21
PHE
298
A
LYS
299
n
22
LYS
299
A
LYS
300
n
23
LYS
300
A
GLU
301
n
24
GLU
301
A
SER
302
n
25
SER
302
A
LEU
303
n
26
LEU
303
A
ASP
304
n
27
ASP
304
A
VAL
305
n
28
VAL
305
A
LYS
306
n
29
LYS
306
A
GLU
307
n
30
GLU
307
A
ASN
308
n
31
ASN
308
A
LYS
309
n
32
LYS
309
A
VAL
310
n
33
VAL
310
A
TYR
311
n
34
TYR
311
A
LEU
312
n
35
LEU
312
A
VAL
313
n
36
VAL
313
A
ALA
314
n
37
ALA
314
A
ALA
315
n
38
ALA
315
A
THR
316
n
39
THR
316
A
LEU
317
n
40
LEU
317
A
ARG
318
n
41
ARG
318
A
PRO
319
n
42
PRO
319
A
GLU
320
n
43
GLU
320
A
THR
321
n
44
THR
321
A
MET
322
n
45
MET
322
A
TYR
323
n
46
TYR
323
A
GLY
324
n
47
GLY
324
A
GLN
325
n
48
GLN
325
A
THR
326
n
49
THR
326
A
CYS
327
n
50
CYS
327
A
CYS
328
n
51
CYS
328
A
PHE
329
n
52
PHE
329
A
VAL
330
n
53
VAL
330
A
SER
331
n
54
SER
331
A
PRO
332
n
55
PRO
332
A
LYS
333
n
56
LYS
333
A
ILE
334
n
57
ILE
334
A
ASP
335
n
58
ASP
335
A
TYR
336
n
59
TYR
336
A
GLY
337
n
60
GLY
337
A
VAL
338
n
61
VAL
338
A
PHE
339
n
62
PHE
339
A
ASP
340
n
63
ASP
340
A
ALA
341
n
64
ALA
341
A
GLY
342
n
65
GLY
342
A
ASN
343
n
66
ASN
343
A
GLY
344
n
67
GLY
344
A
ASP
345
n
68
ASP
345
A
TYR
346
n
69
TYR
346
A
PHE
347
n
70
PHE
347
A
ILE
348
n
71
ILE
348
A
THR
349
n
72
THR
349
A
THR
350
n
73
THR
350
A
GLU
351
n
74
GLU
351
A
ARG
352
n
75
ARG
352
A
ALA
353
n
76
ALA
353
A
PHE
354
n
77
PHE
354
A
LYS
355
n
78
LYS
355
A
ASN
356
n
79
ASN
356
A
MET
357
n
80
MET
357
A
SER
358
n
81
SER
358
A
PHE
359
n
82
PHE
359
A
GLN
360
n
83
GLN
360
A
ASN
361
n
84
ASN
361
A
LEU
362
n
85
LEU
362
A
THR
363
n
86
THR
363
A
PRO
364
n
87
PRO
364
A
LYS
365
n
88
LYS
365
A
ARG
366
n
89
ARG
366
A
GLY
367
n
90
GLY
367
A
TYR
368
n
91
TYR
368
A
TYR
369
n
92
TYR
369
A
LYS
370
n
93
LYS
370
A
PRO
371
n
94
PRO
371
A
LEU
372
n
95
LEU
372
A
PHE
373
n
96
PHE
373
A
THR
374
n
97
THR
374
A
ILE
375
n
98
ILE
375
A
ASN
376
n
99
ASN
376
A
GLY
377
n
100
GLY
377
A
LYS
378
n
101
LYS
378
A
THR
379
n
102
THR
379
A
LEU
380
n
103
LEU
380
A
ILE
381
n
104
ILE
381
A
GLY
382
n
105
GLY
382
A
SER
383
n
106
SER
383
A
ARG
384
n
107
ARG
384
A
ILE
385
n
108
ILE
385
A
ASP
386
n
109
ASP
386
A
ALA
387
n
110
ALA
387
A
PRO
388
n
111
PRO
388
A
TYR
389
n
112
TYR
389
A
ALA
390
n
113
ALA
390
A
VAL
391
n
114
VAL
391
A
ASN
392
n
115
ASN
392
A
LYS
393
n
116
LYS
393
A
ASN
394
n
117
ASN
394
A
LEU
395
n
118
LEU
395
A
ARG
396
n
119
ARG
396
A
VAL
397
n
120
VAL
397
A
LEU
398
n
121
LEU
398
A
PRO
399
n
122
PRO
399
A
MET
400
n
123
MET
400
A
GLU
401
n
124
GLU
401
A
THR
402
n
125
THR
402
A
VAL
403
n
126
VAL
403
A
LEU
404
n
127
LEU
404
A
ALA
405
n
128
ALA
405
A
THR
406
n
129
THR
406
A
LYS
407
n
130
LYS
407
A
GLY
408
n
131
GLY
408
A
THR
409
n
132
THR
409
A
GLY
410
n
133
GLY
410
A
VAL
411
n
134
VAL
411
A
VAL
412
n
135
VAL
412
A
THR
413
n
136
THR
413
A
CYS
414
n
137
CYS
414
A
VAL
415
n
138
VAL
415
A
PRO
416
n
139
PRO
416
A
SER
417
n
140
SER
417
A
ASP
418
n
141
ASP
418
A
SER
419
n
142
SER
419
A
PRO
420
n
143
PRO
420
A
ASP
421
n
144
ASP
421
A
ASP
422
n
145
ASP
422
A
PHE
423
n
146
PHE
423
A
VAL
424
n
147
VAL
424
A
THR
425
n
148
THR
425
A
THR
426
n
149
THR
426
A
ARG
427
n
150
ARG
427
A
ASP
428
n
151
ASP
428
A
LEU
429
n
152
LEU
429
A
ALA
430
n
153
ALA
430
A
ASN
431
n
154
ASN
431
A
LYS
432
n
155
LYS
432
A
PRO
433
n
156
PRO
433
A
GLU
434
n
157
GLU
434
A
TYR
435
n
158
TYR
435
A
TYR
436
n
159
TYR
436
A
GLY
437
n
160
GLY
437
A
ILE
438
n
161
ILE
438
A
GLU
439
n
162
GLU
439
A
LYS
440
n
163
LYS
440
A
ASP
441
n
164
ASP
441
A
TRP
442
n
165
TRP
442
A
VAL
443
n
166
VAL
443
A
GLN
444
n
167
GLN
444
A
THR
445
n
168
THR
445
A
ASP
446
n
169
ASP
446
A
ILE
447
n
170
ILE
447
A
VAL
448
n
171
VAL
448
A
PRO
449
n
172
PRO
449
A
ILE
450
n
173
ILE
450
A
VAL
451
n
174
VAL
451
A
HIS
452
n
175
HIS
452
A
THR
453
n
176
THR
453
A
GLU
454
n
177
GLU
454
A
LYS
455
n
178
LYS
455
A
TYR
456
n
179
TYR
456
A
GLY
457
n
180
GLY
457
A
ASP
458
n
181
ASP
458
A
LYS
459
n
182
LYS
459
A
CYS
460
n
183
CYS
460
A
ALA
461
n
184
ALA
461
A
GLU
462
n
185
GLU
462
A
PHE
463
n
186
PHE
463
A
LEU
464
n
187
LEU
464
A
VAL
465
n
188
VAL
465
A
ASN
466
n
189
ASN
466
A
ASP
467
n
190
ASP
467
A
LEU
468
n
191
LEU
468
A
LYS
469
n
192
LYS
469
A
ILE
470
n
193
ILE
470
A
GLN
471
n
194
GLN
471
A
SER
472
n
195
SER
472
A
PRO
473
n
196
PRO
473
A
LYS
474
n
197
LYS
474
A
ASP
475
n
198
ASP
475
A
SER
476
n
199
SER
476
A
VAL
477
n
200
VAL
477
A
GLN
478
n
201
GLN
478
A
LEU
479
n
202
LEU
479
A
ALA
480
n
203
ALA
480
A
ASN
481
n
204
ASN
481
A
ALA
482
n
205
ALA
482
A
LYS
483
n
206
LYS
483
A
GLU
484
n
207
GLU
484
A
LEU
485
n
208
LEU
485
A
ALA
486
n
209
ALA
486
A
TYR
487
n
210
TYR
487
A
LYS
488
n
211
LYS
488
A
GLU
489
n
212
GLU
489
A
GLY
490
n
213
GLY
490
A
PHE
491
n
214
PHE
491
A
TYR
492
n
215
TYR
492
A
ASN
493
n
216
ASN
493
A
GLY
494
n
217
GLY
494
A
THR
495
n
218
THR
495
A
MET
496
n
219
MET
496
A
LEU
497
n
220
LEU
497
A
ILE
498
n
221
ILE
498
A
GLY
499
n
222
GLY
499
A
LYS
500
n
223
LYS
500
A
TYR
501
n
224
TYR
501
A
LYS
502
n
225
LYS
502
A
GLY
503
n
226
GLY
503
A
ASP
504
n
227
ASP
504
A
LYS
505
n
228
LYS
505
A
VAL
506
n
229
VAL
506
A
GLU
507
n
230
GLU
507
A
ASP
508
n
231
ASP
508
A
ALA
509
n
232
ALA
509
A
LYS
510
n
233
LYS
510
A
PRO
511
n
234
PRO
511
A
LYS
512
n
235
LYS
512
A
VAL
513
n
236
VAL
513
A
LYS
514
n
237
LYS
514
A
GLN
515
n
238
GLN
515
A
ASP
516
n
239
ASP
516
A
LEU
517
n
240
LEU
517
A
ILE
518
n
241
ILE
518
A
ASP
519
n
242
ASP
519
A
GLU
520
n
243
GLU
520
A
GLY
521
n
244
GLY
521
A
LEU
522
n
245
LEU
522
A
ALA
523
n
246
ALA
523
A
PHE
524
n
247
PHE
524
A
VAL
525
n
248
VAL
525
A
TYR
526
n
249
TYR
526
A
ASN
527
n
250
ASN
527
A
GLU
528
n
251
GLU
528
A
n
252
529
A
n
253
530
A
n
254
531
A
n
255
532
A
n
256
533
A
n
257
534
A
n
258
535
A
n
259
536
A
n
260
537
A
n
261
538
A
1.7707
-0.0712
-0.4880
1.3608
0.3176
1.1226
-0.0004
-0.0897
0.0013
0.0403
-0.0373
0.0449
0.0397
-0.0477
0.0378
0.0665
0.0008
-0.0113
0.0314
-0.0031
0.0356
refined
11.3700
2.2590
11.6720
X-RAY DIFFRACTION
A
279
A
528
X-RAY DIFFRACTION
1
A
1529
A
1529
X-RAY DIFFRACTION
1
author_and_software_defined_assembly
PQS
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
375
A
N
ILE
98
A
O
TYR
336
A
O
TYR
59
A
N
PHE
339
A
N
PHE
62
A
O
PHE
347
A
O
PHE
70
A
N
TYR
346
A
N
TYR
69
A
O
LYS
309
A
O
LYS
32
A
N
THR
316
A
N
THR
39
A
O
VAL
281
A
O
VAL
4
A
N
GLY
282
A
N
GLY
5
A
O
PHE
524
A
O
PHE
247
A
N
ILE
375
A
N
ILE
98
A
O
TYR
336
A
O
TYR
59
A
N
PHE
339
A
N
PHE
62
A
O
PHE
347
A
O
PHE
70
A
N
TYR
346
A
N
TYR
69
A
O
LYS
309
A
O
LYS
32
A
N
THR
316
A
N
THR
39
A
O
VAL
281
A
O
VAL
4
A
N
THR
288
A
N
THR
11
A
O
ARG
384
A
O
ARG
107
A
N
ILE
385
A
N
ILE
108
A
O
LEU
395
A
O
LEU
118
A
N
LEU
398
A
N
LEU
121
A
O
CYS
328
A
O
CYS
51
A
N
PHE
329
A
N
PHE
52
A
O
VAL
412
A
O
VAL
135
A
N
HIS
452
A
N
HIS
175
A
O
THR
495
A
O
THR
218
1
A
MET
278
A
MET
1
1
Y
1
A
PRO
529
A
PRO
252
1
Y
1
A
GLU
530
A
GLU
253
1
Y
1
A
LEU
531
A
LEU
254
1
Y
1
A
GLU
532
A
GLU
255
1
Y
1
A
HIS
533
A
HIS
256
1
Y
1
A
HIS
534
A
HIS
257
1
Y
1
A
HIS
535
A
HIS
258
1
Y
1
A
HIS
536
A
HIS
259
1
Y
1
A
HIS
537
A
HIS
260
1
Y
1
A
HIS
538
A
HIS
261
1
Y
1
A
CYS
327
-178.79
-179.20
1
A
TYR
369
-149.58
31.14
1
A
TYR
389
75.17
-2.41
1
A
ILE
450
-132.92
-47.65
22.96
0.07
0.00
0.00
-0.87
0.00
0.79
0.943
0.883
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
0.26155
0.18450
0.18811
2.20
49.88
629
12300
4.9
99.75
16.747
0.184
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.343
0.251
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
MASK
2.20
49.88
247
2257
36
0
1974
0.009
0.022
2056
1.153
2.004
2792
5.835
5.000
249
39.932
25.281
89
15.389
15.000
358
6.994
15.000
7
0.074
0.200
309
0.006
0.021
1538
0.419
1.500
1244
0.782
2.000
2019
1.107
3.000
812
1.854
4.500
773
0.383
0.288
2.257
48
902
20
99.48
2.20
30.00
2WFG
12930
0.0
0.16
1
8.16
3.49
99.7
0.55
2.20
2.26
2.26
1
3.31
99.5
refinement
REFMAC
5.5.0070
data reduction
XDS
data scaling
XSCALE
phasing
PHASER
CYTOSOLIC LEUCYL-TRNA SYNTHETASE
Structure of the Candida albicans cytosolic leucyl-tRNA synthetase editing domain bound to a benzoxaborole-AMP adduct
1
N
N
2
N
N
3
N
N
A
ALA
291
A
ALA
14
HELX_P
A
GLU
301
A
GLU
24
1
1
11
A
ARG
318
A
ARG
41
HELX_P
A
GLN
325
A
GLN
48
5
2
8
A
THR
350
A
THR
73
HELX_P
A
SER
358
A
SER
81
1
3
9
A
GLY
377
A
GLY
100
HELX_P
A
ILE
381
A
ILE
104
1
4
5
A
SER
419
A
SER
142
HELX_P
A
LYS
432
A
LYS
155
1
5
14
A
GLU
439
A
GLU
162
HELX_P
A
VAL
443
A
VAL
166
5
6
5
A
LYS
459
A
LYS
182
HELX_P
A
LEU
468
A
LEU
191
1
7
10
A
ASP
475
A
ASP
198
HELX_P
A
GLY
494
A
GLY
217
1
8
20
A
LYS
505
A
LYS
228
HELX_P
A
GLU
520
A
GLU
243
1
9
16
LIGASE
LIGASE, LEUCYL-TRNA SYNTHETASE, EDITING DOMAIN, CANDIDA ALBICANS, HYDROLYSIS OF MIS-CHARGED TRNAS, BENZOXABOROLE, ANTI-FUNGAL
2WFG
PDB
1
2WFG
Q5A9A4_CANAL
UNP
1
Q5A9A4
278
279
2WFG
278
279
2WFG
A
1
1
2
280
530
2WFG
280
530
Q5A9A4
A
2
3
253
531
538
2WFG
531
538
2WFG
A
1
254
261
6
9
2
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
PHE
373
A
PHE
96
A
ASN
376
A
ASN
99
A
ASP
335
A
ASP
58
A
ASP
340
A
ASP
63
A
ASP
345
A
ASP
68
A
THR
349
A
THR
72
A
LYS
309
A
LYS
32
A
THR
316
A
THR
39
A
TYR
280
A
TYR
3
A
ASP
289
A
ASP
12
A
ALA
523
A
ALA
246
A
TYR
526
A
TYR
249
A
PHE
373
A
PHE
96
A
ASN
376
A
ASN
99
A
ASP
335
A
ASP
58
A
ASP
340
A
ASP
63
A
ASP
345
A
ASP
68
A
THR
349
A
THR
72
A
LYS
309
A
LYS
32
A
THR
316
A
THR
39
A
TYR
280
A
TYR
3
A
ASP
289
A
ASP
12
A
ARG
384
A
ARG
107
A
ASP
386
A
ASP
109
A
LEU
395
A
LEU
118
A
PRO
399
A
PRO
122
A
CYS
327
A
CYS
50
A
VAL
330
A
VAL
53
A
VAL
412
A
VAL
135
A
CYS
414
A
CYS
137
A
VAL
451
A
VAL
174
A
HIS
452
A
HIS
175
A
THR
495
A
THR
218
A
MET
496
A
MET
219
BINDING SITE FOR RESIDUE ZZB A 1529
Software
20
A
TYR
280
A
TYR
3
20
1_555
A
ALA
315
A
ALA
38
20
1_555
A
THR
316
A
THR
39
20
1_555
A
LEU
317
A
LEU
40
20
1_555
A
ARG
318
A
ARG
41
20
1_555
A
THR
321
A
THR
44
20
1_555
A
ARG
366
A
ARG
89
20
3_645
A
LEU
404
A
LEU
127
20
1_555
A
LYS
407
A
LYS
130
20
1_555
A
VAL
412
A
VAL
135
20
1_555
A
ASP
418
A
ASP
141
20
1_555
A
SER
419
A
SER
142
20
1_555
A
LYS
483
A
LYS
206
20
1_555
A
TYR
487
A
TYR
210
20
1_555
A
HOH
2124
C
HOH
20
1_555
A
HOH
2137
C
HOH
20
1_555
A
HOH
2243
C
HOH
20
1_555
A
HOH
2244
C
HOH
20
1_555
A
HOH
2245
C
HOH
20
1_555
A
HOH
2247
C
HOH
20
1_555
19
P 21 21 21