0.008665
0.005002
0.000000
0.000000
0.010005
0.000000
0.000000
0.000000
0.016848
0.00000
0.00000
0.00000
Bowden, T.A.
Aricescu, A.R.
Nettleship, J.E.
Siebold, C.
Rahman-Huq, N.
Owens, R.J.
Stuart, D.I.
Jones, E.Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
115.412
115.412
59.354
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
R
C
N
251
R
C
N
252
R
C
N
253
S
C
N
254
R
C
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
N
N
259
N
O
N
260
N
O
N
261
N
O
N
262
N
O
N
263
N
O
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
C
Y
287
N
C
Y
288
N
C
Y
289
N
C
Y
290
N
C
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
N
N
304
S
C
N
305
N
C
N
306
N
O
N
307
N
C
N
308
N
C
N
309
N
C
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
N
N
321
S
C
N
322
N
C
N
323
N
O
N
324
N
C
N
325
N
O
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
R
C
N
339
N
O
N
340
N
C
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
N
N
352
S
C
N
353
N
C
N
354
N
O
N
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
N
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
N
N
379
S
C
N
380
N
C
N
381
N
O
N
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
N
389
N
O
N
390
N
O
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
N
N
403
S
C
N
404
N
C
N
405
N
O
N
406
N
C
N
407
N
C
N
408
N
C
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
Y
278
N
doub
Y
279
N
sing
Y
280
N
sing
N
281
N
sing
Y
282
N
doub
N
283
N
sing
Y
284
N
doub
N
285
N
sing
Y
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
Y
347
N
doub
Y
348
N
sing
Y
349
N
sing
N
350
N
sing
Y
351
N
doub
Y
352
N
sing
Y
353
N
sing
N
354
N
sing
Y
355
N
sing
Y
356
N
doub
N
357
N
sing
Y
358
N
doub
N
359
N
sing
Y
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
doub
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
Y
375
N
doub
Y
376
N
sing
Y
377
N
sing
N
378
N
sing
Y
379
N
doub
N
380
N
sing
Y
381
N
doub
N
382
N
sing
Y
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
UK
Structure
STRUE6
2005
0969-2126
17
1386
10.1016/J.STR.2009.07.018
19836338
Structural Plasticity of Eph-Receptor A4 Facilitates Cross-Class Ephrin Signalling
2009
10.2210/pdb2wo3/pdb
pdb_00002wo3
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
MIRRORS
CCD
2007-02-10
ADSC CCD
DOUBLE CRYSTAL
SINGLE WAVELENGTH
M
x-ray
1
1.81
1.0
I04
Diamond
1.81
SYNCHROTRON
DIAMOND BEAMLINE I04
21467.191
EPHRIN TYPE-A RECEPTOR
2.7.10.1
EPHRIN LIGAND BINDING DOMAIN, RESIDUES 30-202
1
man
polymer
N-ACETYLGLUCOSAMINE LINKAGES OBSERVED IN STRUCTURE AT ASN 42
18065.105
EPHRIN-A2
EPH RECEPTOR BINDING DOMAIN, RESIDUES 33-177
YES
1
man
polymer
424.401
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
18.015
water
136
nat
water
TYROSINE-PROTEIN KINASE RECEPTOR SEK, RECEPTOR PROTEIN-TYROSINE KINASE HEK8, TYROSINE-PROTEIN KINASE TYRO1
EPH-RELATED RECEPTOR TYROSINE KINASE LIGAND 6, HEK7-LIGAND, LERK-6, HEK7-L
no
no
ETGEVTLLDSRSVQGELGWIASPLEGGWEEVSIMDEKNTPIRTYQVCNVMEPSQNNWLRTDWITREGAQRVYIEIKFTLR
DCNSLPGVMGTCKETFNLYYYESDNDKERFIRENQFVKIDTIAADESFTQVDIGDRIMKLNTEIRDVGPLSKKGFYLAFQ
DVGACIALVSVRVFYKRTKHHHHHH
ETGEVTLLDSRSVQGELGWIASPLEGGWEEVSIMDEKNTPIRTYQVCNVMEPSQNNWLRTDWITREGAQRVYIEIKFTLR
DCNSLPGVMGTCKETFNLYYYESDNDKERFIRENQFVKIDTIAADESFTQVDIGDRIMKLNTEIRDVGPLSKKGFYLAFQ
DVGACIALVSVRVFYKRTKHHHHHH
A
polypeptide(L)
no
no
ETGNSDRYAVYWNRSNPRFHAGAGDDGGGYTVEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRGF
KRWECNRPAAPGGPLKFSEKFQLFTPFSLGFEFRPGHEYYYISATPPNAVDRPCLRLKVYVRPTQETLGTKHHHHHH
ETGNSDRYAVYWNRSNPRFHAGAGDDGGGYTVEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRGF
KRWECNRPAAPGGPLKFSEKFQLFTPFSLGFEFRPGHEYYYISATPPNAVDRPCLRLKVYVRPTQETLGTKHHHHHH
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
Human
sample
9606
Homo sapiens
HEK293T
9606
Homo sapiens
PHLSEC
Human
Human
sample
9606
Homo sapiens
HEK293T
9606
Homo sapiens
PHLSEC
1
2.9
57
NONE
8.0
20% PEG 3350, 200 MM KNO3, pH 8.0
entity_src_gen
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_database_status
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
struct_asym
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Advisory
Version format compliance
Database references
Source and taxonomy
Atomic model
Data collection
Derived calculations
Other
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2009-10-27
1
1
2011-07-13
1
2
2011-11-23
1
3
2018-02-28
2
0
2020-07-29
2
1
2023-12-20
_entity_src_gen.gene_src_common_name
_entity_src_gen.host_org_common_name
_entity_src_gen.pdbx_gene_src_scientific_name
_entity_src_gen.pdbx_host_org_cell_line
_entity_src_gen.pdbx_host_org_scientific_name
_entity_src_gen.pdbx_host_org_strain
_atom_site.auth_asym_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_chem_comp.name
_chem_comp.type
_entity.formula_weight
_entity.pdbx_description
_entity.pdbx_number_of_molecules
_entity.type
_pdbx_database_status.status_code_sf
_pdbx_struct_assembly_gen.asym_id_list
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
B
NAG
1175
n
C
NAG
1
B
NAG
1176
n
C
NAG
2
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
CRYSTAL STRUCTURE OF THE EPHA4 LIGAND BINDING DOMAIN
CRYSTAL STRUCTURE OF THE EPHA4-EPHRINB2 COMPLEX
HELIX
DETERMINATION METHOD: AUTHOR PROVIDED (DSSP).
SHEET
DETERMINATION METHOD: AUTHOR PROVIDED (DSSP).
PDBE
Y
PDBE
2009-07-21
REL
REL
oligosaccharide
DGlcpNAcb1-4DGlcpNAcb1-
3
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1
3
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}
3
PDB-CARE
LINUCS
C1
O4
NAG
NAG
2
1
3
O1
HO4
sing
n
n
HOH
water
ENGINEERED RESIDUE IN CHAIN B, ASN 174 TO GLN
Q174N SITE-DIRECTED MUTATION TO PROMOTE CRYSTALLOGENESIS
1KGY
PDB ENTRY 1KGY
PDB
experimental model
HOH
2001
4
HOH
HOH
2001
A
HOH
2002
4
HOH
HOH
2002
A
HOH
2003
4
HOH
HOH
2003
A
HOH
2004
4
HOH
HOH
2004
A
HOH
2005
4
HOH
HOH
2005
A
HOH
2006
4
HOH
HOH
2006
A
HOH
2007
4
HOH
HOH
2007
A
HOH
2008
4
HOH
HOH
2008
A
HOH
2009
4
HOH
HOH
2009
A
HOH
2010
4
HOH
HOH
2010
A
HOH
2011
4
HOH
HOH
2011
A
HOH
2012
4
HOH
HOH
2012
A
HOH
2013
4
HOH
HOH
2013
A
HOH
2014
4
HOH
HOH
2014
A
HOH
2015
4
HOH
HOH
2015
A
HOH
2016
4
HOH
HOH
2016
A
HOH
2017
4
HOH
HOH
2017
A
HOH
2018
4
HOH
HOH
2018
A
HOH
2019
4
HOH
HOH
2019
A
HOH
2020
4
HOH
HOH
2020
A
HOH
2021
4
HOH
HOH
2021
A
HOH
2022
4
HOH
HOH
2022
A
HOH
2023
4
HOH
HOH
2023
A
HOH
2024
4
HOH
HOH
2024
A
HOH
2025
4
HOH
HOH
2025
A
HOH
2026
4
HOH
HOH
2026
A
HOH
2027
4
HOH
HOH
2027
A
HOH
2028
4
HOH
HOH
2028
A
HOH
2029
4
HOH
HOH
2029
A
HOH
2030
4
HOH
HOH
2030
A
HOH
2031
4
HOH
HOH
2031
A
HOH
2032
4
HOH
HOH
2032
A
HOH
2033
4
HOH
HOH
2033
A
HOH
2034
4
HOH
HOH
2034
A
HOH
2035
4
HOH
HOH
2035
A
HOH
2036
4
HOH
HOH
2036
A
HOH
2037
4
HOH
HOH
2037
A
HOH
2038
4
HOH
HOH
2038
A
HOH
2039
4
HOH
HOH
2039
A
HOH
2040
4
HOH
HOH
2040
A
HOH
2041
4
HOH
HOH
2041
A
HOH
2042
4
HOH
HOH
2042
A
HOH
2043
4
HOH
HOH
2043
A
HOH
2044
4
HOH
HOH
2044
A
HOH
2045
4
HOH
HOH
2045
A
HOH
2046
4
HOH
HOH
2046
A
HOH
2047
4
HOH
HOH
2047
A
HOH
2048
4
HOH
HOH
2048
A
HOH
2049
4
HOH
HOH
2049
A
HOH
2050
4
HOH
HOH
2050
A
HOH
2051
4
HOH
HOH
2051
A
HOH
2052
4
HOH
HOH
2052
A
HOH
2053
4
HOH
HOH
2053
A
HOH
2054
4
HOH
HOH
2054
A
HOH
2055
4
HOH
HOH
2055
A
HOH
2056
4
HOH
HOH
2056
A
HOH
2057
4
HOH
HOH
2057
A
HOH
2058
4
HOH
HOH
2058
A
HOH
2059
4
HOH
HOH
2059
A
HOH
2060
4
HOH
HOH
2060
A
HOH
2061
4
HOH
HOH
2061
A
HOH
2001
4
HOH
HOH
2001
B
HOH
2002
4
HOH
HOH
2002
B
HOH
2003
4
HOH
HOH
2003
B
HOH
2004
4
HOH
HOH
2004
B
HOH
2005
4
HOH
HOH
2005
B
HOH
2006
4
HOH
HOH
2006
B
HOH
2007
4
HOH
HOH
2007
B
HOH
2008
4
HOH
HOH
2008
B
HOH
2009
4
HOH
HOH
2009
B
HOH
2010
4
HOH
HOH
2010
B
HOH
2011
4
HOH
HOH
2011
B
HOH
2012
4
HOH
HOH
2012
B
HOH
2013
4
HOH
HOH
2013
B
HOH
2014
4
HOH
HOH
2014
B
HOH
2015
4
HOH
HOH
2015
B
HOH
2016
4
HOH
HOH
2016
B
HOH
2017
4
HOH
HOH
2017
B
HOH
2018
4
HOH
HOH
2018
B
HOH
2019
4
HOH
HOH
2019
B
HOH
2020
4
HOH
HOH
2020
B
HOH
2021
4
HOH
HOH
2021
B
HOH
2022
4
HOH
HOH
2022
B
HOH
2023
4
HOH
HOH
2023
B
HOH
2024
4
HOH
HOH
2024
B
HOH
2025
4
HOH
HOH
2025
B
HOH
2026
4
HOH
HOH
2026
B
HOH
2027
4
HOH
HOH
2027
B
HOH
2028
4
HOH
HOH
2028
B
HOH
2029
4
HOH
HOH
2029
B
HOH
2030
4
HOH
HOH
2030
B
HOH
2031
4
HOH
HOH
2031
B
HOH
2032
4
HOH
HOH
2032
B
HOH
2033
4
HOH
HOH
2033
B
HOH
2034
4
HOH
HOH
2034
B
HOH
2035
4
HOH
HOH
2035
B
HOH
2036
4
HOH
HOH
2036
B
HOH
2037
4
HOH
HOH
2037
B
HOH
2038
4
HOH
HOH
2038
B
HOH
2039
4
HOH
HOH
2039
B
HOH
2040
4
HOH
HOH
2040
B
HOH
2041
4
HOH
HOH
2041
B
HOH
2042
4
HOH
HOH
2042
B
HOH
2043
4
HOH
HOH
2043
B
HOH
2044
4
HOH
HOH
2044
B
HOH
2045
4
HOH
HOH
2045
B
HOH
2046
4
HOH
HOH
2046
B
HOH
2047
4
HOH
HOH
2047
B
HOH
2048
4
HOH
HOH
2048
B
HOH
2049
4
HOH
HOH
2049
B
HOH
2050
4
HOH
HOH
2050
B
HOH
2051
4
HOH
HOH
2051
B
HOH
2052
4
HOH
HOH
2052
B
HOH
2053
4
HOH
HOH
2053
B
HOH
2054
4
HOH
HOH
2054
B
HOH
2055
4
HOH
HOH
2055
B
HOH
2056
4
HOH
HOH
2056
B
HOH
2057
4
HOH
HOH
2057
B
HOH
2058
4
HOH
HOH
2058
B
HOH
2059
4
HOH
HOH
2059
B
HOH
2060
4
HOH
HOH
2060
B
HOH
2061
4
HOH
HOH
2061
B
HOH
2062
4
HOH
HOH
2062
B
HOH
2063
4
HOH
HOH
2063
B
HOH
2064
4
HOH
HOH
2064
B
HOH
2065
4
HOH
HOH
2065
B
HOH
2066
4
HOH
HOH
2066
B
HOH
2067
4
HOH
HOH
2067
B
HOH
2068
4
HOH
HOH
2068
B
HOH
2069
4
HOH
HOH
2069
B
HOH
2070
4
HOH
HOH
2070
B
HOH
2071
4
HOH
HOH
2071
B
HOH
2072
4
HOH
HOH
2072
B
HOH
2073
4
HOH
HOH
2073
B
HOH
2074
4
HOH
HOH
2074
B
HOH
2075
4
HOH
HOH
2075
B
n
1
27
A
THR
28
n
2
THR
28
A
GLY
29
n
3
GLY
29
A
GLU
30
n
4
GLU
30
A
VAL
31
n
5
VAL
31
A
THR
32
n
6
THR
32
A
LEU
33
n
7
LEU
33
A
LEU
34
n
8
LEU
34
A
ASP
35
n
9
ASP
35
A
SER
36
n
10
SER
36
A
ARG
37
n
11
ARG
37
A
SER
38
n
12
SER
38
A
VAL
39
n
13
VAL
39
A
GLN
40
n
14
GLN
40
A
GLY
41
n
15
GLY
41
A
GLU
42
n
16
GLU
42
A
LEU
43
n
17
LEU
43
A
GLY
44
n
18
GLY
44
A
TRP
45
n
19
TRP
45
A
ILE
46
n
20
ILE
46
A
ALA
47
n
21
ALA
47
A
SER
48
n
22
SER
48
A
PRO
49
n
23
PRO
49
A
LEU
50
n
24
LEU
50
A
GLU
51
n
25
GLU
51
A
GLY
52
n
26
GLY
52
A
GLY
53
n
27
GLY
53
A
TRP
54
n
28
TRP
54
A
GLU
55
n
29
GLU
55
A
GLU
56
n
30
GLU
56
A
VAL
57
n
31
VAL
57
A
SER
58
n
32
SER
58
A
ILE
59
n
33
ILE
59
A
MET
60
n
34
MET
60
A
ASP
61
n
35
ASP
61
A
GLU
62
n
36
GLU
62
A
LYS
63
n
37
LYS
63
A
ASN
64
n
38
ASN
64
A
THR
65
n
39
THR
65
A
PRO
66
n
40
PRO
66
A
ILE
67
n
41
ILE
67
A
ARG
68
n
42
ARG
68
A
THR
69
n
43
THR
69
A
TYR
70
n
44
TYR
70
A
GLN
71
n
45
GLN
71
A
VAL
72
n
46
VAL
72
A
CYS
73
n
47
CYS
73
A
ASN
74
n
48
ASN
74
A
VAL
75
n
49
VAL
75
A
MET
76
n
50
MET
76
A
GLU
77
n
51
GLU
77
A
PRO
78
n
52
PRO
78
A
SER
79
n
53
SER
79
A
GLN
80
n
54
GLN
80
A
ASN
81
n
55
ASN
81
A
ASN
82
n
56
ASN
82
A
TRP
83
n
57
TRP
83
A
LEU
84
n
58
LEU
84
A
ARG
85
n
59
ARG
85
A
THR
86
n
60
THR
86
A
ASP
87
n
61
ASP
87
A
TRP
88
n
62
TRP
88
A
ILE
89
n
63
ILE
89
A
THR
90
n
64
THR
90
A
ARG
91
n
65
ARG
91
A
GLU
92
n
66
GLU
92
A
GLY
93
n
67
GLY
93
A
ALA
94
n
68
ALA
94
A
GLN
95
n
69
GLN
95
A
ARG
96
n
70
ARG
96
A
VAL
97
n
71
VAL
97
A
TYR
98
n
72
TYR
98
A
ILE
99
n
73
ILE
99
A
GLU
100
n
74
GLU
100
A
ILE
101
n
75
ILE
101
A
LYS
102
n
76
LYS
102
A
PHE
103
n
77
PHE
103
A
THR
104
n
78
THR
104
A
LEU
105
n
79
LEU
105
A
ARG
106
n
80
ARG
106
A
ASP
107
n
81
ASP
107
A
CYS
108
n
82
CYS
108
A
ASN
109
n
83
ASN
109
A
SER
110
n
84
SER
110
A
LEU
111
n
85
LEU
111
A
PRO
112
n
86
PRO
112
A
GLY
113
n
87
GLY
113
A
VAL
114
n
88
VAL
114
A
MET
115
n
89
MET
115
A
GLY
116
n
90
GLY
116
A
THR
117
n
91
THR
117
A
CYS
118
n
92
CYS
118
A
LYS
119
n
93
LYS
119
A
GLU
120
n
94
GLU
120
A
THR
121
n
95
THR
121
A
PHE
122
n
96
PHE
122
A
ASN
123
n
97
ASN
123
A
LEU
124
n
98
LEU
124
A
TYR
125
n
99
TYR
125
A
TYR
126
n
100
TYR
126
A
TYR
127
n
101
TYR
127
A
GLU
128
n
102
GLU
128
A
SER
129
n
103
SER
129
A
ASP
130
n
104
ASP
130
A
ASN
131
n
105
ASN
131
A
ASP
132
n
106
ASP
132
A
LYS
133
n
107
LYS
133
A
GLU
134
n
108
GLU
134
A
ARG
135
n
109
ARG
135
A
PHE
136
n
110
PHE
136
A
ILE
137
n
111
ILE
137
A
ARG
138
n
112
ARG
138
A
GLU
139
n
113
GLU
139
A
ASN
140
n
114
ASN
140
A
GLN
141
n
115
GLN
141
A
PHE
142
n
116
PHE
142
A
VAL
143
n
117
VAL
143
A
LYS
144
n
118
LYS
144
A
ILE
145
n
119
ILE
145
A
ASP
146
n
120
ASP
146
A
THR
147
n
121
THR
147
A
ILE
148
n
122
ILE
148
A
ALA
149
n
123
ALA
149
A
ALA
150
n
124
ALA
150
A
ASP
151
n
125
ASP
151
A
GLU
152
n
126
GLU
152
A
SER
153
n
127
SER
153
A
PHE
154
n
128
PHE
154
A
THR
155
n
129
THR
155
A
GLN
156
n
130
GLN
156
A
VAL
157
n
131
VAL
157
A
ASP
158
n
132
ASP
158
A
ILE
159
n
133
ILE
159
A
GLY
160
n
134
GLY
160
A
ASP
161
n
135
ASP
161
A
ARG
162
n
136
ARG
162
A
ILE
163
n
137
ILE
163
A
MET
164
n
138
MET
164
A
LYS
165
n
139
LYS
165
A
LEU
166
n
140
LEU
166
A
ASN
167
n
141
ASN
167
A
THR
168
n
142
THR
168
A
GLU
169
n
143
GLU
169
A
ILE
170
n
144
ILE
170
A
ARG
171
n
145
ARG
171
A
ASP
172
n
146
ASP
172
A
VAL
173
n
147
VAL
173
A
GLY
174
n
148
GLY
174
A
PRO
175
n
149
PRO
175
A
LEU
176
n
150
LEU
176
A
SER
177
n
151
SER
177
A
LYS
178
n
152
LYS
178
A
LYS
179
n
153
LYS
179
A
GLY
180
n
154
GLY
180
A
PHE
181
n
155
PHE
181
A
TYR
182
n
156
TYR
182
A
LEU
183
n
157
LEU
183
A
ALA
184
n
158
ALA
184
A
PHE
185
n
159
PHE
185
A
GLN
186
n
160
GLN
186
A
ASP
187
n
161
ASP
187
A
VAL
188
n
162
VAL
188
A
GLY
189
n
163
GLY
189
A
ALA
190
n
164
ALA
190
A
CYS
191
n
165
CYS
191
A
ILE
192
n
166
ILE
192
A
ALA
193
n
167
ALA
193
A
LEU
194
n
168
LEU
194
A
VAL
195
n
169
VAL
195
A
SER
196
n
170
SER
196
A
VAL
197
n
171
VAL
197
A
ARG
198
n
172
ARG
198
A
VAL
199
n
173
VAL
199
A
PHE
200
n
174
PHE
200
A
TYR
201
n
175
TYR
201
A
LYS
202
n
176
LYS
202
A
ARG
203
n
177
ARG
203
A
n
178
204
A
n
179
205
A
n
180
206
A
n
181
207
A
n
182
208
A
n
183
209
A
n
184
210
A
n
185
211
A
n
1
30
B
n
2
31
B
n
3
32
B
ASN
33
n
4
ASN
33
B
SER
34
n
5
SER
34
B
ASP
35
n
6
ASP
35
B
ARG
36
n
7
ARG
36
B
TYR
37
n
8
TYR
37
B
ALA
38
n
9
ALA
38
B
VAL
39
n
10
VAL
39
B
TYR
40
n
11
TYR
40
B
TRP
41
n
12
TRP
41
B
ASN
42
n
13
ASN
42
B
ARG
43
n
14
ARG
43
B
SER
44
n
15
SER
44
B
ASN
45
n
16
ASN
45
B
PRO
46
n
17
PRO
46
B
ARG
47
n
18
ARG
47
B
PHE
48
n
19
PHE
48
B
HIS
49
n
20
HIS
49
B
ALA
50
n
21
ALA
50
B
GLY
51
n
22
GLY
51
B
ALA
52
n
23
ALA
52
B
GLY
53
n
24
GLY
53
B
ASP
54
n
25
ASP
54
B
ASP
55
n
26
ASP
55
B
GLY
56
n
27
GLY
56
B
GLY
57
n
28
GLY
57
B
GLY
58
n
29
GLY
58
B
TYR
59
n
30
TYR
59
B
THR
60
n
31
THR
60
B
VAL
61
n
32
VAL
61
B
GLU
62
n
33
GLU
62
B
VAL
63
n
34
VAL
63
B
SER
64
n
35
SER
64
B
ILE
65
n
36
ILE
65
B
ASN
66
n
37
ASN
66
B
ASP
67
n
38
ASP
67
B
TYR
68
n
39
TYR
68
B
LEU
69
n
40
LEU
69
B
ASP
70
n
41
ASP
70
B
ILE
71
n
42
ILE
71
B
TYR
72
n
43
TYR
72
B
CYS
73
n
44
CYS
73
B
PRO
74
n
45
PRO
74
B
HIS
75
n
46
HIS
75
B
TYR
76
n
47
TYR
76
B
GLY
77
n
48
GLY
77
B
ALA
78
n
49
ALA
78
B
PRO
79
n
50
PRO
79
B
LEU
80
n
51
LEU
80
B
PRO
81
n
52
PRO
81
B
PRO
82
n
53
PRO
82
B
ALA
83
n
54
ALA
83
B
GLU
84
n
55
GLU
84
B
ARG
85
n
56
ARG
85
B
MET
86
n
57
MET
86
B
GLU
87
n
58
GLU
87
B
HIS
88
n
59
HIS
88
B
TYR
89
n
60
TYR
89
B
VAL
90
n
61
VAL
90
B
LEU
91
n
62
LEU
91
B
TYR
92
n
63
TYR
92
B
MET
93
n
64
MET
93
B
VAL
94
n
65
VAL
94
B
ASN
95
n
66
ASN
95
B
GLY
96
n
67
GLY
96
B
GLU
97
n
68
GLU
97
B
GLY
98
n
69
GLY
98
B
HIS
99
n
70
HIS
99
B
ALA
100
n
71
ALA
100
B
SER
101
n
72
SER
101
B
CYS
102
n
73
CYS
102
B
ASP
103
n
74
ASP
103
B
HIS
104
n
75
HIS
104
B
ARG
105
n
76
ARG
105
B
GLN
106
n
77
GLN
106
B
ARG
107
n
78
ARG
107
B
GLY
108
n
79
GLY
108
B
PHE
109
n
80
PHE
109
B
LYS
110
n
81
LYS
110
B
ARG
111
n
82
ARG
111
B
TRP
112
n
83
TRP
112
B
GLU
113
n
84
GLU
113
B
CYS
114
n
85
CYS
114
B
ASN
115
n
86
ASN
115
B
ARG
116
n
87
ARG
116
B
PRO
117
n
88
PRO
117
B
ALA
118
n
89
ALA
118
B
ALA
119
n
90
ALA
119
B
PRO
120
n
91
PRO
120
B
GLY
121
n
92
GLY
121
B
GLY
122
n
93
GLY
122
B
PRO
123
n
94
PRO
123
B
LEU
124
n
95
LEU
124
B
LYS
125
n
96
LYS
125
B
PHE
126
n
97
PHE
126
B
SER
127
n
98
SER
127
B
GLU
128
n
99
GLU
128
B
LYS
129
n
100
LYS
129
B
PHE
130
n
101
PHE
130
B
GLN
131
n
102
GLN
131
B
LEU
132
n
103
LEU
132
B
PHE
133
n
104
PHE
133
B
THR
134
n
105
THR
134
B
PRO
135
n
106
PRO
135
B
PHE
136
n
107
PHE
136
B
SER
137
n
108
SER
137
B
LEU
138
n
109
LEU
138
B
GLY
139
n
110
GLY
139
B
PHE
140
n
111
PHE
140
B
GLU
141
n
112
GLU
141
B
PHE
142
n
113
PHE
142
B
ARG
143
n
114
ARG
143
B
PRO
144
n
115
PRO
144
B
GLY
145
n
116
GLY
145
B
HIS
146
n
117
HIS
146
B
GLU
147
n
118
GLU
147
B
TYR
148
n
119
TYR
148
B
TYR
149
n
120
TYR
149
B
TYR
150
n
121
TYR
150
B
ILE
151
n
122
ILE
151
B
SER
152
n
123
SER
152
B
ALA
153
n
124
ALA
153
B
THR
154
n
125
THR
154
B
PRO
155
n
126
PRO
155
B
PRO
156
n
127
PRO
156
B
ASN
157
n
128
ASN
157
B
ALA
158
n
129
ALA
158
B
VAL
159
n
130
VAL
159
B
ASP
160
n
131
ASP
160
B
ARG
161
n
132
ARG
161
B
PRO
162
n
133
PRO
162
B
CYS
163
n
134
CYS
163
B
LEU
164
n
135
LEU
164
B
ARG
165
n
136
ARG
165
B
LEU
166
n
137
LEU
166
B
LYS
167
n
138
LYS
167
B
VAL
168
n
139
VAL
168
B
TYR
169
n
140
TYR
169
B
VAL
170
n
141
VAL
170
B
ARG
171
n
142
ARG
171
B
PRO
172
n
143
PRO
172
B
THR
173
n
144
THR
173
B
GLN
174
n
145
GLN
174
B
n
146
175
B
n
147
176
B
n
148
177
B
n
149
178
B
n
150
179
B
n
151
180
B
n
152
181
B
n
153
182
B
n
154
183
B
n
155
184
B
n
156
185
B
n
157
186
B
1.8431
-0.1820
0.3498
0.8936
0.4448
4.3541
0.0767
-0.0517
0.0468
0.1288
-0.2086
-0.0673
0.2520
-0.2501
0.1319
0.0583
-0.0532
0.0152
0.1686
-0.0121
0.0319
refined
14.8600
-44.8480
27.8600
X-RAY DIFFRACTION
4.4989
-0.3875
-0.2482
1.1352
0.1455
0.9061
-0.0713
-0.1605
-0.1446
0.0326
0.0255
-0.0169
-0.0320
0.0740
0.0458
0.0886
0.0215
0.0053
0.1142
0.0019
0.0082
refined
-6.1370
-40.8940
9.6280
X-RAY DIFFRACTION
B
32
B
173
X-RAY DIFFRACTION
1
A
28
A
203
X-RAY DIFFRACTION
2
author_and_software_defined_assembly
PISA
2
dimeric
2570
-2.8
15980
B
ASN
42
GLYCOSYLATION SITE
B
ASN
13
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ILE
46
A
O
ILE
20
A
N
ARG
85
A
N
ARG
59
A
O
ASN
82
A
O
ASN
56
A
N
ASP
187
A
N
ASP
161
A
O
GLY
180
A
O
GLY
154
A
N
SER
129
A
N
SER
103
A
O
PHE
122
A
O
PHE
96
A
N
ILE
148
A
N
ILE
122
A
O
GLU
55
A
O
GLU
29
A
N
GLN
71
A
N
GLN
45
A
O
TYR
70
A
O
TYR
44
A
N
LEU
194
A
N
LEU
168
A
O
ALA
193
A
O
ALA
167
A
N
THR
104
A
N
THR
78
A
O
VAL
97
A
O
VAL
71
A
N
VAL
173
A
N
VAL
147
A
O
VAL
31
A
O
VAL
5
A
N
TYR
201
A
N
TYR
175
B
O
TYR
37
B
O
TYR
8
B
N
TYR
68
B
N
TYR
39
B
O
LEU
69
B
O
LEU
40
B
N
GLU
128
B
N
GLU
99
B
O
TYR
59
B
O
TYR
30
B
N
LYS
167
B
N
LYS
138
B
O
LEU
166
B
O
LEU
137
B
N
TYR
150
B
N
TYR
121
B
O
TYR
149
B
O
TYR
120
B
N
VAL
94
B
N
VAL
65
B
O
TYR
89
B
O
TYR
60
B
N
CYS
114
B
N
CYS
85
1
A
GLU
27
A
GLU
1
1
Y
1
A
THR
204
A
THR
178
1
Y
1
A
LYS
205
A
LYS
179
1
Y
1
A
HIS
206
A
HIS
180
1
Y
1
A
HIS
207
A
HIS
181
1
Y
1
A
HIS
208
A
HIS
182
1
Y
1
A
HIS
209
A
HIS
183
1
Y
1
A
HIS
210
A
HIS
184
1
Y
1
A
HIS
211
A
HIS
185
1
Y
1
B
GLU
30
B
GLU
1
1
Y
1
B
THR
31
B
THR
2
1
Y
1
B
GLY
32
B
GLY
3
1
Y
1
B
GLU
175
B
GLU
146
1
Y
1
B
THR
176
B
THR
147
1
Y
1
B
LEU
177
B
LEU
148
1
Y
1
B
GLY
178
B
GLY
149
1
Y
1
B
THR
179
B
THR
150
1
Y
1
B
LYS
180
B
LYS
151
1
Y
1
B
HIS
181
B
HIS
152
1
Y
1
B
HIS
182
B
HIS
153
1
Y
1
B
HIS
183
B
HIS
154
1
Y
1
B
HIS
184
B
HIS
155
1
Y
1
B
HIS
185
B
HIS
156
1
Y
1
B
HIS
186
B
HIS
157
1
Y
1
A
A
O
O
HOH
HOH
2039
2039
2.14
1_555
4_445
1
B
B
O
O
HOH
HOH
2064
2064
2.14
1_555
4_545
1
A
VAL
39
-37.40
130.78
1
A
GLU
62
-26.74
-60.10
1
A
CYS
73
-154.64
53.96
1
A
GLU
92
49.83
-113.31
1
A
LYS
133
-151.89
53.19
1
B
ASP
54
-164.38
98.10
42.790
1.19
0.59
0.00
1.19
0.00
-1.78
0.953
0.927
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
0.24554
0.19779
0.20012
2.35
49.97
954
17987
5.0
99.90
13.556
0.148
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.295
0.229
0.80
0.80
1.40
PDB ENTRY 1KGY
MAXIMUM LIKELIHOOD
MASK
2.35
49.97
136
2740
28
0
2576
0.011
0.022
2680
0.001
0.020
1858
1.287
1.957
3639
0.807
3.000
4463
6.389
5.000
316
30.513
23.165
139
15.017
15.000
425
13.384
15.000
24
0.077
0.200
376
0.005
0.021
2998
0.001
0.020
593
0.750
1.500
1582
0.099
1.500
640
1.409
2.000
2557
1.560
3.000
1098
2.644
4.500
1082
0.423
0.442
2.411
80
1295
20
98.78
58.9
2.35
50.00
2WO3
18961
-3.0
0.09
1
30.00
16.0
99.9
0.75
2.35
2.41
1.80
1
8.1
99.4
refinement
REFMAC
5.5.0088
data reduction
HKL-2000
data scaling
SCALEPACK
phasing
PHASER
Crystal Structure of the EphA4-ephrinA2 complex
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
CYS
108
A
CYS
82
HELX_P
A
SER
110
A
SER
84
5
1
3
A
GLU
139
A
GLU
113
HELX_P
A
GLN
141
A
GLN
115
5
2
3
A
GLN
156
A
GLN
130
HELX_P
A
ASP
161
A
ASP
135
1
3
6
B
ALA
83
B
ALA
54
HELX_P
B
ARG
85
B
ARG
56
5
4
3
B
GLY
96
B
GLY
67
HELX_P
B
SER
101
B
SER
72
1
5
6
disulf
2.050
A
CYS
73
A
SG
CYS
47
1_555
A
CYS
191
A
SG
CYS
165
1_555
disulf
2.043
A
CYS
108
A
SG
CYS
82
1_555
A
CYS
118
A
SG
CYS
92
1_555
disulf
2.035
B
CYS
73
B
SG
CYS
44
1_555
B
CYS
114
B
SG
CYS
85
1_555
disulf
2.047
B
CYS
102
B
SG
CYS
73
1_555
B
CYS
163
B
SG
CYS
134
1_555
covale
1.452
one
N-Glycosylation
B
ASN
42
B
ND2
ASN
13
1_555
C
NAG
1
C
C1
NAG
1_555
covale
1.446
both
C
NAG
1
C
O4
NAG
1_555
C
NAG
2
C
C1
NAG
1_555
TRANSFERASE/SIGNALING PROTEIN
TRANSFERASE-SIGNALING PROTEIN COMPLEX, EFN, EPH, EPHA4, KINASE, EPHRIN, COMPLEX, MEMBRANE, CELL SURFACE RECEPTOR, TYROSINE-PROTEIN KINASE, GLYCOPROTEIN, EPHRINA2
A
SER
48
A
SER
22
1
A
PRO
49
A
PRO
23
2.02
A
GLY
174
A
GLY
148
1
A
PRO
175
A
PRO
149
2.89
B
ALA
78
B
ALA
49
1
B
PRO
79
B
PRO
50
1.90
B
PRO
155
B
PRO
126
1
B
PRO
156
B
PRO
127
2.16
B
ARG
161
B
ARG
132
1
B
PRO
162
B
PRO
133
-1.00
EPHA4_HUMAN
UNP
1
P54764
EFNA2_HUMAN
UNP
2
O43921
30
202
2WO3
30
202
P54764
A
1
4
176
33
173
2WO3
33
173
O43921
B
2
4
144
1
expression tag
GLU
27
2WO3
A
P54764
UNP
1
1
expression tag
THR
28
2WO3
A
P54764
UNP
2
1
expression tag
GLY
29
2WO3
A
P54764
UNP
3
1
expression tag
ARG
203
2WO3
A
P54764
UNP
177
1
expression tag
THR
204
2WO3
A
P54764
UNP
178
1
expression tag
LYS
205
2WO3
A
P54764
UNP
179
1
expression tag
HIS
206
2WO3
A
P54764
UNP
180
1
expression tag
HIS
207
2WO3
A
P54764
UNP
181
1
expression tag
HIS
208
2WO3
A
P54764
UNP
182
1
expression tag
HIS
209
2WO3
A
P54764
UNP
183
1
expression tag
HIS
210
2WO3
A
P54764
UNP
184
1
expression tag
HIS
211
2WO3
A
P54764
UNP
185
2
expression tag
GLU
30
2WO3
B
O43921
UNP
1
2
expression tag
THR
31
2WO3
B
O43921
UNP
2
2
expression tag
GLY
32
2WO3
B
O43921
UNP
3
2
ASN
engineered mutation
GLN
174
2WO3
B
O43921
UNP
174
145
2
expression tag
GLU
175
2WO3
B
O43921
UNP
146
2
expression tag
THR
176
2WO3
B
O43921
UNP
147
2
expression tag
LEU
177
2WO3
B
O43921
UNP
148
2
expression tag
GLY
178
2WO3
B
O43921
UNP
149
2
expression tag
THR
179
2WO3
B
O43921
UNP
150
2
expression tag
LYS
180
2WO3
B
O43921
UNP
151
2
expression tag
HIS
181
2WO3
B
O43921
UNP
152
2
expression tag
HIS
182
2WO3
B
O43921
UNP
153
2
expression tag
HIS
183
2WO3
B
O43921
UNP
154
2
expression tag
HIS
184
2WO3
B
O43921
UNP
155
2
expression tag
HIS
185
2WO3
B
O43921
UNP
156
2
expression tag
HIS
186
2WO3
B
O43921
UNP
157
5
5
2
3
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
46
A
ILE
20
A
SER
48
A
SER
22
A
ASN
82
A
ASN
56
A
ARG
85
A
ARG
59
A
GLY
180
A
GLY
154
A
ASP
187
A
ASP
161
A
THR
121
A
THR
95
A
SER
129
A
SER
103
A
VAL
143
A
VAL
117
A
ALA
149
A
ALA
123
A
GLU
55
A
GLU
29
A
MET
60
A
MET
34
A
PRO
66
A
PRO
40
A
CYS
73
A
CYS
47
A
CYS
191
A
CYS
165
A
TYR
201
A
TYR
175
A
VAL
97
A
VAL
71
A
LEU
105
A
LEU
79
A
ASN
167
A
ASN
141
A
VAL
173
A
VAL
147
A
GLU
30
A
GLU
4
A
ASP
35
A
ASP
9
A
ARG
198
A
ARG
172
A
LYS
202
A
LYS
176
B
ARG
36
B
ARG
7
B
TRP
41
B
TRP
12
B
TYR
68
B
TYR
39
B
CYS
73
B
CYS
44
B
LYS
125
B
LYS
96
B
LYS
129
B
LYS
100
B
TYR
59
B
TYR
30
B
VAL
63
B
VAL
34
B
ARG
165
B
ARG
136
B
VAL
170
B
VAL
141
B
GLU
147
B
GLU
118
B
ALA
153
B
ALA
124
B
TYR
89
B
TYR
60
B
VAL
94
B
VAL
65
B
GLY
108
B
GLY
79
B
CYS
114
B
CYS
85
172
P 64