0.013672 0.007894 0.000000 0.000000 0.015788 0.000000 0.000000 0.000000 0.015903 0.00000 0.00000 0.00000 Anand, K. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 73.140 73.140 62.880 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H15 N5 O11 P2 443.201 n GUANOSINE-5'-DIPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N P N 89 N O N 90 N O N 91 N O N 92 N O N 93 N P N 94 N O N 95 N O N 96 N O N 97 N C N 98 R C N 99 N O N 100 S C N 101 N O N 102 R C N 103 N O N 104 R C Y 105 N N Y 106 N C Y 107 N N Y 108 N C N 109 N C N 110 N O N 111 N N N 112 N C N 113 N N N 114 N N Y 115 N C N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N N N 132 S C N 133 N C N 134 N O N 135 N C N 136 N C N 137 N C N 138 N O N 139 N N N 140 N O N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N N N 152 S C N 153 N C N 154 N O N 155 N C N 156 N C N 157 N C N 158 N O N 159 N O N 160 N O N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N N N 171 N C N 172 N C N 173 N O N 174 N O N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 N C Y 185 N C Y 186 N N Y 187 N C Y 188 N C Y 189 N N N 190 N O N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N O N 202 N H N 203 N H N 204 N N N 205 S C N 206 N C N 207 N O N 208 S C N 209 N C N 210 N C N 211 N C N 212 N O N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N N N 227 S C N 228 N C N 229 N O N 230 N C N 231 N C N 232 N C N 233 N C N 234 N O N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N N N 249 S C N 250 N C N 251 N O N 252 N C N 253 N C N 254 N C N 255 N C N 256 N N N 257 N O N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N S N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N N N 294 S C N 295 N C N 296 N O N 297 N C Y 298 N C Y 299 N C Y 300 N C Y 301 N C Y 302 N C Y 303 N C N 304 N O N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N N N 317 S C N 318 N C N 319 N O N 320 N C N 321 N C N 322 N C N 323 N O N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N N N 334 S C N 335 N C N 336 N O N 337 N C N 338 N O N 339 N O N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N N N 348 S C N 349 N C N 350 N O N 351 R C N 352 N O N 353 N C N 354 N O N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N N N 365 S C N 366 N C N 367 N O N 368 N C Y 369 N C Y 370 N C Y 371 N C Y 372 N C Y 373 N C Y 374 N C N 375 N O N 376 N O N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N N N 389 S C N 390 N C N 391 N O N 392 N C N 393 N C N 394 N C N 395 N O N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N doub N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N doub N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing Y 112 N sing Y 113 N sing Y 114 N doub N 115 N sing Y 116 N sing N 117 N sing Y 118 N doub N 119 N doub N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N doub N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N doub N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N doub N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N doub N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing Y 185 N sing Y 186 N doub Y 187 N doub N 188 N sing Y 189 N sing N 190 N sing Y 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N doub N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N doub N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N doub N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N doub N 289 N sing N 290 N sing N 291 N sing N 292 N sing Y 293 N doub Y 294 N sing Y 295 N sing N 296 N sing Y 297 N doub N 298 N sing Y 299 N doub N 300 N sing Y 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N doub N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N doub N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N doub N 358 N sing N 359 N sing N 360 N sing N 361 N sing Y 362 N doub Y 363 N sing Y 364 N sing N 365 N sing Y 366 N doub N 367 N sing Y 368 N doub N 369 N sing Y 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N doub N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing To be Published 0353 Crystal Structure of the Activating H-Ras I163F Mutant in Costello Syndrome, Bound to Mg-Gdp 10.2210/pdb2x1v/pdb pdb_00002x1v 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE 2008-05-15 MAR scanner 345 mm plate SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU 18909.207 GTPASE HRAS 3.6.5.2 G-DOMAIN, RESIDUES 1-166 YES 1 man polymer 443.201 GUANOSINE-5'-DIPHOSPHATE 1 syn non-polymer 18.015 water 116 nat water TRANSFORMING PROTEIN P21, P21RAS, H-RAS-1, C-H-RAS, HA-RAS no no MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV REFRQH MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV REFRQH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n HUMAN sample 9606 HOMO SAPIENS 562 ESCHERICHIA COLI 1 2.82 56.07 DATA WERE TWINNED AND REFINED USING PHENIX.XTRIAGE 7.6 18% POLYETHYLENE GLYCOL (PEG) 6000, 100 MM HEPES PH 7.4, 150 MM MGCL2. chem_comp_atom chem_comp_bond database_2 pdbx_database_status pdbx_initial_refinement_model struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Other Refinement description 1 0 2010-01-12 1 1 2011-05-08 1 2 2011-07-13 1 3 2023-12-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_sf _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H-RAS P21 IN COMPLEX WITH GPPNHP STRUCTURE OF P21RAS IN COMPLEX WITH GPPNHP AT 100 K CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H-RAS P21 IN COMPLEX WITH S- CAGED GTP CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H-RAS P21 IN COMPLEX WITH GDP ( 2) C-H-RAS P21 PROTEIN MUTANT WITH THR 35 REPLACED BY SER(T35S) COMPLEXED WITH GUANOSINE-5'-[B,G-IMIDO] TRIPHOSPHATE H-RAS COMPLEXED WITH DIAMINOBENZOPHENONE-BETA ,GAMMA-IMIDO- GTP COMPLEX OF HUMAN H-RAS WITH HUMAN SOS-1 CRYSTAL STRUCTURE OF A TERNARY RAS:SOS:RAS *GDP COMPLEX STRUCTURAL EVIDENCE FOR FEEDBACK ACTIVATION BY RASGTP OFTHE RAS-SPECIFIC NUCLEOTIDE EXCHANGE FACTOR SOS STRUCTURE OF THE Q61G MUTANT OF RAS IN THE GDP-BOUND FORM CRYSTAL STRUCTURE OF THE GPPNHP-BOUND H- RAS G60A MUTANT CRYSTAL STRUCTURE OF HRAS(G12V) - ANTI-RAS FV (DISULFIDE FREE MUTANT) COMPLEX CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H-RAS P21 IN COMPLEX WITH GTP (2) H-RAS P21 PROTEIN MUTANT G12P, COMPLEXED WITHGUANOSINE-5'-[BETA,GAMMA-METHYLENE] TRIPHOSPHATEAND MANGANESE CRYSTAL STRUCTURE OF THE C-HA-RAS PROTEIN PREPARED BY THECELL-FREE SYNTHESIS H-RAS IN 50% ISOPROPANOL CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H-RAS P21 IN COMPLEX WITH GDP CRYSTAL STRUCTURE OF THE ACTIVE RAS PROTEIN COMPLEXED WITHTHE RAS-INTERACTING DOMAIN OF RALGDS CRYSTAL STRUCTURE OF RAS-BRY2RBD COMPLEX HUMAN C-HA-RAS(1-171)(DOT)GDP, NMR, MINIMIZED AVERAGE STRUCTURE STRUCTURAL EVIDENCE FOR FEEDBACK ACTIVATION BY RASGTP OFTHE RAS-SPECIFIC NUCLEOTIDE EXCHANGE FACTOR SOS CRYSTAL STRUCTURE OF THE GTP-BOUND FORM OF RASQ61G CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H-RAS P21 IN COMPLEX WITH GTP STRUCTURE OF P21RAS IN COMPLEX WITH GTP AT 100 K H-RAS P21 PROTEIN MUTANT G12P, COMPLEXED WITHGUANOSINE-5'-[BETA,GAMMA-METHYLENE] TRIPHOSPHATE ANDMAGNESIUM H-RAS 166 IN 50% 2,2,2 TRIFLOUROETHANOL STRUCTURE OF PLC EPSILON RAS ASSOCIATION DOMAIN WITH HRAS H-RAS 166 IN 60 % 1,6 HEXANEDIOL H-RAS COMPLEXED WITH DIAMINOBENZOPHENONE-BETA ,GAMMA-IMIDO- GTP CRYSTAL STRUCTURE OF RASA59G IN THE GDP- BOUND FORM STRUCTURAL EVIDENCE FOR FEEDBACK ACTIVATION BY RASGTP OFTHE RAS-SPECIFIC NUCLEOTIDE EXCHANGE FACTOR SOS CRYSTAL STRUCTURE ANALYSIS OF A FLUORESCENT FORM OF H-RASP21 IN COMPLEX WITH R-CAGED GTP RAS-RASGAP COMPLEX RAS G12V - PI 3-KINASE GAMMA COMPLEX H-RAS 166 IN AQUEOUS MOTHER LIQOUR, RT STRUCTURAL EVIDENCE FOR FEEDBACK ACTIVATION BY RASGTP OFTHE RAS-SPECIFIC NUCLEOTIDE EXCHANGE FACTOR SOS CRYSTAL STRUCTURE OF THE GDP-BOUND FORM OF THE RASG60AMUTANT CRYSTAL STRUCTURE OF HRAS(G12V) - ANTI-RAS FV COMPLEX CRYSTAL STRUCTURE OF RASA59G IN THE GTP- BOUND FORM PDBE Y PDBE 2010-01-04 REL REL 1 A O HOH 2010 6.27 1 A O HOH 2011 6.22 1 A O HOH 2013 6.49 1 A O HOH 2018 7.46 1 A O HOH 2019 6.05 1 A O HOH 2022 8.07 1 A O HOH 2033 6.87 1 A O HOH 2053 5.82 GDP GUANOSINE-5'-DIPHOSPHATE HOH water ENGINEERED RESIDUE IN CHAIN A, ILE 163 TO PHE 4Q21 PDB ENTRY 4Q21 PDB experimental model GDP 1165 2 GDP GDP 1165 A HOH 2001 3 HOH HOH 2001 A HOH 2002 3 HOH HOH 2002 A HOH 2003 3 HOH HOH 2003 A HOH 2004 3 HOH HOH 2004 A HOH 2005 3 HOH HOH 2005 A HOH 2006 3 HOH HOH 2006 A HOH 2007 3 HOH HOH 2007 A HOH 2008 3 HOH HOH 2008 A HOH 2009 3 HOH HOH 2009 A HOH 2010 3 HOH HOH 2010 A HOH 2011 3 HOH HOH 2011 A HOH 2012 3 HOH HOH 2012 A HOH 2013 3 HOH HOH 2013 A HOH 2014 3 HOH HOH 2014 A HOH 2015 3 HOH HOH 2015 A HOH 2016 3 HOH HOH 2016 A HOH 2017 3 HOH HOH 2017 A HOH 2018 3 HOH HOH 2018 A HOH 2019 3 HOH HOH 2019 A HOH 2020 3 HOH HOH 2020 A HOH 2021 3 HOH HOH 2021 A HOH 2022 3 HOH HOH 2022 A HOH 2023 3 HOH HOH 2023 A HOH 2024 3 HOH HOH 2024 A HOH 2025 3 HOH HOH 2025 A HOH 2026 3 HOH HOH 2026 A HOH 2027 3 HOH HOH 2027 A HOH 2028 3 HOH HOH 2028 A HOH 2029 3 HOH HOH 2029 A HOH 2030 3 HOH HOH 2030 A HOH 2031 3 HOH HOH 2031 A HOH 2032 3 HOH HOH 2032 A HOH 2033 3 HOH HOH 2033 A HOH 2034 3 HOH HOH 2034 A HOH 2035 3 HOH HOH 2035 A HOH 2036 3 HOH HOH 2036 A HOH 2037 3 HOH HOH 2037 A HOH 2038 3 HOH HOH 2038 A HOH 2039 3 HOH HOH 2039 A HOH 2040 3 HOH HOH 2040 A HOH 2041 3 HOH HOH 2041 A HOH 2042 3 HOH HOH 2042 A HOH 2043 3 HOH HOH 2043 A HOH 2044 3 HOH HOH 2044 A HOH 2045 3 HOH HOH 2045 A HOH 2046 3 HOH HOH 2046 A HOH 2047 3 HOH HOH 2047 A HOH 2048 3 HOH HOH 2048 A HOH 2049 3 HOH HOH 2049 A HOH 2050 3 HOH HOH 2050 A HOH 2051 3 HOH HOH 2051 A HOH 2052 3 HOH HOH 2052 A HOH 2053 3 HOH HOH 2053 A HOH 2054 3 HOH HOH 2054 A HOH 2055 3 HOH HOH 2055 A HOH 2056 3 HOH HOH 2056 A HOH 2057 3 HOH HOH 2057 A HOH 2058 3 HOH HOH 2058 A HOH 2059 3 HOH HOH 2059 A HOH 2060 3 HOH HOH 2060 A HOH 2061 3 HOH HOH 2061 A HOH 2062 3 HOH HOH 2062 A HOH 2063 3 HOH HOH 2063 A HOH 2064 3 HOH HOH 2064 A HOH 2065 3 HOH HOH 2065 A HOH 2066 3 HOH HOH 2066 A HOH 2067 3 HOH HOH 2067 A HOH 2068 3 HOH HOH 2068 A HOH 2069 3 HOH HOH 2069 A HOH 2070 3 HOH HOH 2070 A HOH 2071 3 HOH HOH 2071 A HOH 2072 3 HOH HOH 2072 A HOH 2073 3 HOH HOH 2073 A HOH 2074 3 HOH HOH 2074 A HOH 2075 3 HOH HOH 2075 A HOH 2076 3 HOH HOH 2076 A HOH 2077 3 HOH HOH 2077 A HOH 2078 3 HOH HOH 2078 A HOH 2079 3 HOH HOH 2079 A HOH 2080 3 HOH HOH 2080 A HOH 2081 3 HOH HOH 2081 A HOH 2082 3 HOH HOH 2082 A HOH 2083 3 HOH HOH 2083 A HOH 2084 3 HOH HOH 2084 A HOH 2085 3 HOH HOH 2085 A HOH 2086 3 HOH HOH 2086 A HOH 2087 3 HOH HOH 2087 A HOH 2088 3 HOH HOH 2088 A HOH 2089 3 HOH HOH 2089 A HOH 2090 3 HOH HOH 2090 A HOH 2091 3 HOH HOH 2091 A HOH 2092 3 HOH HOH 2092 A HOH 2093 3 HOH HOH 2093 A HOH 2094 3 HOH HOH 2094 A HOH 2095 3 HOH HOH 2095 A HOH 2096 3 HOH HOH 2096 A HOH 2097 3 HOH HOH 2097 A HOH 2098 3 HOH HOH 2098 A HOH 2099 3 HOH HOH 2099 A HOH 2100 3 HOH HOH 2100 A HOH 2101 3 HOH HOH 2101 A HOH 2102 3 HOH HOH 2102 A HOH 2103 3 HOH HOH 2103 A HOH 2104 3 HOH HOH 2104 A HOH 2105 3 HOH HOH 2105 A HOH 2106 3 HOH HOH 2106 A HOH 2107 3 HOH HOH 2107 A HOH 2108 3 HOH HOH 2108 A HOH 2109 3 HOH HOH 2109 A HOH 2110 3 HOH HOH 2110 A HOH 2111 3 HOH HOH 2111 A HOH 2112 3 HOH HOH 2112 A HOH 2113 3 HOH HOH 2113 A HOH 2114 3 HOH HOH 2114 A HOH 2115 3 HOH HOH 2115 A HOH 2116 3 HOH HOH 2116 A n 1 1 A THR 2 n 2 THR 2 A GLU 3 n 3 GLU 3 A TYR 4 n 4 TYR 4 A LYS 5 n 5 LYS 5 A LEU 6 n 6 LEU 6 A VAL 7 n 7 VAL 7 A VAL 8 n 8 VAL 8 A VAL 9 n 9 VAL 9 A GLY 10 n 10 GLY 10 A ALA 11 n 11 ALA 11 A GLY 12 n 12 GLY 12 A GLY 13 n 13 GLY 13 A VAL 14 n 14 VAL 14 A GLY 15 n 15 GLY 15 A LYS 16 n 16 LYS 16 A SER 17 n 17 SER 17 A ALA 18 n 18 ALA 18 A LEU 19 n 19 LEU 19 A THR 20 n 20 THR 20 A ILE 21 n 21 ILE 21 A GLN 22 n 22 GLN 22 A LEU 23 n 23 LEU 23 A ILE 24 n 24 ILE 24 A GLN 25 n 25 GLN 25 A ASN 26 n 26 ASN 26 A HIS 27 n 27 HIS 27 A PHE 28 n 28 PHE 28 A VAL 29 n 29 VAL 29 A n 30 30 A n 31 31 A n 32 32 A n 33 33 A n 34 34 A n 35 35 A n 36 36 A n 37 37 A ASP 38 n 38 ASP 38 A SER 39 n 39 SER 39 A TYR 40 n 40 TYR 40 A ARG 41 n 41 ARG 41 A LYS 42 n 42 LYS 42 A GLN 43 n 43 GLN 43 A VAL 44 n 44 VAL 44 A VAL 45 n 45 VAL 45 A ILE 46 n 46 ILE 46 A ASP 47 n 47 ASP 47 A GLY 48 n 48 GLY 48 A GLU 49 n 49 GLU 49 A THR 50 n 50 THR 50 A CYS 51 n 51 CYS 51 A LEU 52 n 52 LEU 52 A LEU 53 n 53 LEU 53 A ASP 54 n 54 ASP 54 A ILE 55 n 55 ILE 55 A LEU 56 n 56 LEU 56 A ASP 57 n 57 ASP 57 A THR 58 n 58 THR 58 A ALA 59 n 59 ALA 59 A n 60 60 A n 61 61 A n 62 62 A n 63 63 A n 64 64 A n 65 65 A n 66 66 A n 67 67 A n 68 68 A n 69 69 A n 70 70 A n 71 71 A n 72 72 A n 73 73 A n 74 74 A n 75 75 A GLU 76 n 76 GLU 76 A GLY 77 n 77 GLY 77 A PHE 78 n 78 PHE 78 A LEU 79 n 79 LEU 79 A CYS 80 n 80 CYS 80 A VAL 81 n 81 VAL 81 A PHE 82 n 82 PHE 82 A ALA 83 n 83 ALA 83 A ILE 84 n 84 ILE 84 A ASN 85 n 85 ASN 85 A ASN 86 n 86 ASN 86 A THR 87 n 87 THR 87 A LYS 88 n 88 LYS 88 A SER 89 n 89 SER 89 A PHE 90 n 90 PHE 90 A GLU 91 n 91 GLU 91 A ASP 92 n 92 ASP 92 A ILE 93 n 93 ILE 93 A HIS 94 n 94 HIS 94 A GLN 95 n 95 GLN 95 A TYR 96 n 96 TYR 96 A ARG 97 n 97 ARG 97 A GLU 98 n 98 GLU 98 A GLN 99 n 99 GLN 99 A ILE 100 n 100 ILE 100 A LYS 101 n 101 LYS 101 A ARG 102 n 102 ARG 102 A VAL 103 n 103 VAL 103 A LYS 104 n 104 LYS 104 A ASP 105 n 105 ASP 105 A SER 106 n 106 SER 106 A ASP 107 n 107 ASP 107 A ASP 108 n 108 ASP 108 A VAL 109 n 109 VAL 109 A PRO 110 n 110 PRO 110 A MET 111 n 111 MET 111 A VAL 112 n 112 VAL 112 A LEU 113 n 113 LEU 113 A VAL 114 n 114 VAL 114 A GLY 115 n 115 GLY 115 A ASN 116 n 116 ASN 116 A LYS 117 n 117 LYS 117 A CYS 118 n 118 CYS 118 A ASP 119 n 119 ASP 119 A LEU 120 n 120 LEU 120 A ALA 121 n 121 ALA 121 A ALA 122 n 122 ALA 122 A ARG 123 n 123 ARG 123 A THR 124 n 124 THR 124 A VAL 125 n 125 VAL 125 A GLU 126 n 126 GLU 126 A SER 127 n 127 SER 127 A ARG 128 n 128 ARG 128 A GLN 129 n 129 GLN 129 A ALA 130 n 130 ALA 130 A GLN 131 n 131 GLN 131 A ASP 132 n 132 ASP 132 A LEU 133 n 133 LEU 133 A ALA 134 n 134 ALA 134 A ARG 135 n 135 ARG 135 A SER 136 n 136 SER 136 A TYR 137 n 137 TYR 137 A GLY 138 n 138 GLY 138 A ILE 139 n 139 ILE 139 A PRO 140 n 140 PRO 140 A TYR 141 n 141 TYR 141 A ILE 142 n 142 ILE 142 A GLU 143 n 143 GLU 143 A THR 144 n 144 THR 144 A SER 145 n 145 SER 145 A ALA 146 n 146 ALA 146 A LYS 147 n 147 LYS 147 A THR 148 n 148 THR 148 A ARG 149 n 149 ARG 149 A GLN 150 n 150 GLN 150 A GLY 151 n 151 GLY 151 A VAL 152 n 152 VAL 152 A GLU 153 n 153 GLU 153 A ASP 154 n 154 ASP 154 A ALA 155 n 155 ALA 155 A PHE 156 n 156 PHE 156 A TYR 157 n 157 TYR 157 A THR 158 n 158 THR 158 A LEU 159 n 159 LEU 159 A VAL 160 n 160 VAL 160 A ARG 161 n 161 ARG 161 A GLU 162 n 162 GLU 162 A PHE 163 n 163 PHE 163 A ARG 164 n 164 ARG 164 A n 165 165 A n 166 166 A 0.1671 0.0522 0.0949 0.9188 -0.0048 0.2546 -0.0464 -0.0769 0.0900 -0.0268 0.0401 -0.1261 0.0032 -0.0170 0.0111 0.1095 0.0011 -0.0115 0.1362 0.0064 0.1837 refined 16.9216 -28.1230 -0.8268 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 CHAIN A 1 0.482 author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 9 A N VAL 9 A O LEU 79 A O LEU 79 A N CYS 80 A N CYS 80 A O VAL 112 A O VAL 112 A N GLY 115 A N GLY 115 A O ILE 142 A O ILE 142 A N ILE 46 A N ILE 46 A O GLU 49 A O GLU 49 1 A CG LYS 5 A CG LYS 5 1 Y 1 A CD LYS 5 A CD LYS 5 1 Y 1 A CE LYS 5 A CE LYS 5 1 Y 1 A NZ LYS 5 A NZ LYS 5 1 Y 1 A CG LEU 52 A CG LEU 52 1 Y 1 A CD1 LEU 52 A CD1 LEU 52 1 Y 1 A CD2 LEU 52 A CD2 LEU 52 1 Y 1 A CG ARG 149 A CG ARG 149 1 Y 1 A CD ARG 149 A CD ARG 149 1 Y 1 A NE ARG 149 A NE ARG 149 1 Y 1 A CZ ARG 149 A CZ ARG 149 1 Y 1 A NH1 ARG 149 A NH1 ARG 149 1 Y 1 A NH2 ARG 149 A NH2 ARG 149 1 Y 1 A OD1 ASP 154 A OD1 ASP 154 0 Y 1 A MET 1 A MET 1 1 Y 1 A ASP 30 A ASP 30 1 Y 1 A GLU 31 A GLU 31 1 Y 1 A TYR 32 A TYR 32 1 Y 1 A ASP 33 A ASP 33 1 Y 1 A PRO 34 A PRO 34 1 Y 1 A THR 35 A THR 35 1 Y 1 A ILE 36 A ILE 36 1 Y 1 A GLU 37 A GLU 37 1 Y 1 A GLY 60 A GLY 60 1 Y 1 A GLN 61 A GLN 61 1 Y 1 A GLU 62 A GLU 62 1 Y 1 A GLU 63 A GLU 63 1 Y 1 A TYR 64 A TYR 64 1 Y 1 A SER 65 A SER 65 1 Y 1 A ALA 66 A ALA 66 1 Y 1 A MET 67 A MET 67 1 Y 1 A ARG 68 A ARG 68 1 Y 1 A ASP 69 A ASP 69 1 Y 1 A GLN 70 A GLN 70 1 Y 1 A TYR 71 A TYR 71 1 Y 1 A MET 72 A MET 72 1 Y 1 A ARG 73 A ARG 73 1 Y 1 A THR 74 A THR 74 1 Y 1 A GLY 75 A GLY 75 1 Y 1 A GLN 165 A GLN 165 1 Y 1 A HIS 166 A HIS 166 1 Y 1 A A O O SER THR 145 148 2.17 1 A A CD OE2 GLU GLU 76 76 0.074 0.011 1.252 1.326 N 1 A GLU 3 70.35 55.02 1 A LEU 6 38.23 52.63 1 A LYS 117 76.48 36.28 -3.1443 -0.0000 0.0000 -3.1443 -0.0000 6.2886 HRAS ILE163PHE PATIENT MUTANT LACK BOTH LOOPS THAT ARE INVOLVED IN THE (DISORDERED RESIDUE 30-38 AND 58-69) SWITCH I AND II. 0.2272 0.1899 0.1907 1.700 28.285 1054 21075 5.0 99.77 0.05 1 1.99 MOLECULAR REPLACEMENT 29.13 0.90 1.55 PDB ENTRY 4Q21 TWIN_LSQ_F FLAT BULK SOLVENT MODEL 96.88 0.413 1.700 28.285 116 1229 28 0 1085 0.006 1128 1.089 1529 19.677 405 0.066 177 0.003 193 0.3116 0.2787 1.7898 151 2856 95.00 0.3113 0.2859 1.9019 148 2817 95.00 0.2630 0.2437 2.0487 151 2861 95.00 0.2579 0.2384 2.2548 149 2846 95.00 0.2597 0.2281 2.5809 151 2869 95.00 0.2400 0.1905 3.2508 152 2871 95.00 0.1779 0.1328 28.1655 152 2888 94.00 1.70 20.00 2X1V 1054 2.0 0.03 1 46.14 15 100.0 0.09 1.70 1.80 5.73 1 6.85 100.0 refinement PHENIX (PHENIX.REFINE) data reduction XDS data scaling XSCALE phasing PHASER Crystal Structure of the activating H-Ras I163F mutant in Costello Syndrome, bound to MG-GDP 1 N N 2 N N 3 N N A GLY 15 A GLY 15 HELX_P A ASN 26 A ASN 26 1 1 12 A ASN 86 A ASN 86 HELX_P A ASP 92 A ASP 92 1 2 7 A ASP 92 A ASP 92 HELX_P A ASP 105 A ASP 105 1 3 14 A GLU 126 A GLU 126 HELX_P A GLY 138 A GLY 138 1 4 13 A GLY 151 A GLY 151 HELX_P A GLU 162 A GLU 162 1 5 12 HYDROLASE S-NITROSYLATION, DISEASE MUTATION, PALMITATE, HYDROLASE, METHYLATION, PRENYLATION, CELL MEMBRANE, PROTO-ONCOGENE, GTPASE PROTEIN, GOLGI APPARATUS A TYR 4 A TYR 4 1 A LYS 5 A LYS 5 -15.26 RASH_HUMAN UNP 1 P01112 1 166 2X1V 1 166 P01112 A 1 1 166 1 ILE engineered mutation PHE 163 2X1V A P01112 UNP 163 163 4 2 parallel parallel parallel anti-parallel A VAL 7 A VAL 7 A GLY 10 A GLY 10 A PHE 78 A PHE 78 A ALA 83 A ALA 83 A MET 111 A MET 111 A ASN 116 A ASN 116 A TYR 141 A TYR 141 A GLU 143 A GLU 143 A SER 39 A SER 39 A ILE 46 A ILE 46 A GLU 49 A GLU 49 A LEU 56 A LEU 56 BINDING SITE FOR RESIDUE GDP A 1165 A GDP 1165 Software 19 A GLY 13 A GLY 13 19 1_555 A VAL 14 A VAL 14 19 1_555 A GLY 15 A GLY 15 19 1_555 A LYS 16 A LYS 16 19 1_555 A SER 17 A SER 17 19 1_555 A ALA 18 A ALA 18 19 1_555 A PHE 28 A PHE 28 19 1_555 A ASN 116 A ASN 116 19 1_555 A LYS 117 A LYS 117 19 1_555 A ASP 119 A ASP 119 19 1_555 A LEU 120 A LEU 120 19 1_555 A SER 145 A SER 145 19 1_555 A ALA 146 A ALA 146 19 1_555 A LYS 147 A LYS 147 19 1_555 A HOH 2111 C HOH 19 1_555 A HOH 2112 C HOH 19 1_555 A HOH 2113 C HOH 19 1_555 A HOH 2115 C HOH 19 1_555 A HOH 2116 C HOH 19 1_555 173 P 63