0.020875
0.000000
0.000000
0.000000
0.020875
0.000000
0.000000
0.000000
0.008111
0.00000
0.00000
0.00000
Haq, S.R.
Jurgens, M.C.
Chi, C.N.
Elfstrom, L.
Koh, C.S.
Selmer, M.
Gianni, S.
Jemth, P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
47.905
47.905
123.287
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C3 H5 N2 1
69.085
IMIDAZOLE
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
H4 N 1
18.038
AMMONIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
O
N
21
N
N
N
22
N
O
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
N
N
32
S
C
N
33
N
C
N
34
N
O
N
35
N
C
N
36
N
C
N
37
N
O
N
38
N
O
N
39
N
O
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
N
N
48
R
C
N
49
N
C
N
50
N
O
N
51
N
C
N
52
N
S
N
53
N
O
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
N
N
62
S
C
N
63
N
C
N
64
N
O
N
65
N
C
N
66
N
C
N
67
N
C
N
68
N
O
N
69
N
N
N
70
N
O
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
N
N
82
S
C
N
83
N
C
N
84
N
O
N
85
N
C
N
86
N
C
N
87
N
C
N
88
N
O
N
89
N
O
N
90
N
O
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
N
N
101
N
C
N
102
N
C
N
103
N
O
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
N
N
111
S
C
N
112
N
C
N
113
N
O
N
114
N
C
Y
115
N
C
Y
116
N
N
Y
117
N
C
Y
118
N
C
Y
119
N
N
N
120
N
O
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
N
N
135
S
C
N
136
N
C
N
137
N
O
N
138
S
C
N
139
N
C
N
140
N
C
N
141
N
C
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
Y
156
N
N
Y
157
N
C
Y
158
N
N
Y
159
N
C
Y
160
N
C
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
N
N
167
S
C
N
168
N
C
N
169
N
O
N
170
N
C
N
171
N
C
N
172
N
C
N
173
N
C
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
N
N
189
S
C
N
190
N
C
N
191
N
O
N
192
N
C
N
193
N
C
N
194
N
C
N
195
N
C
N
196
N
N
N
197
N
O
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
N
N
214
S
C
N
215
N
C
N
216
N
O
N
217
N
C
N
218
N
C
N
219
N
S
N
220
N
C
N
221
N
O
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
N
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
N
N
239
S
C
N
240
N
C
N
241
N
O
N
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
Y
247
N
C
Y
248
N
C
N
249
N
O
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
N
N
262
S
C
N
263
N
C
N
264
N
O
N
265
N
C
N
266
N
C
N
267
N
C
N
268
N
O
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
N
N
279
S
C
N
280
N
C
N
281
N
O
N
282
N
C
N
283
N
O
N
284
N
O
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
N
N
293
S
C
N
294
N
C
N
295
N
O
N
296
R
C
N
297
N
O
N
298
N
C
N
299
N
O
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
N
Y
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
Y
322
N
C
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
C
Y
346
N
C
N
347
N
O
N
348
N
O
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
N
N
361
S
C
N
362
N
C
N
363
N
O
N
364
N
C
N
365
N
C
N
366
N
C
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
doub
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
doub
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
doub
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
Y
114
N
sing
Y
115
N
doub
Y
116
N
doub
N
117
N
sing
Y
118
N
sing
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
Y
147
N
sing
Y
148
N
sing
N
149
N
sing
Y
150
N
doub
N
151
N
sing
Y
152
N
sing
N
153
N
sing
Y
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
Y
236
N
doub
Y
237
N
sing
Y
238
N
sing
N
239
N
sing
Y
240
N
doub
N
241
N
sing
Y
242
N
doub
N
243
N
sing
Y
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
doub
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
doub
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
Y
305
N
doub
Y
306
N
sing
Y
307
N
sing
N
308
N
sing
Y
309
N
doub
Y
310
N
sing
Y
311
N
sing
N
312
N
sing
Y
313
N
sing
Y
314
N
doub
N
315
N
sing
Y
316
N
doub
N
317
N
sing
Y
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
Y
333
N
doub
Y
334
N
sing
Y
335
N
sing
N
336
N
sing
Y
337
N
doub
N
338
N
sing
Y
339
N
doub
N
340
N
sing
Y
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
285
18051
10.1074/JBC.M110.110833
20356847
The Plastic Energy Landscape of Protein Folding: A Triangular Folding Mechanism with an Equilibrium Intermediate for a Small Protein Domain.
2010
10.2210/pdb2x7z/pdb
pdb_00002x7z
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
MIRRORS
CCD
2009-01-21
MARRESEARCH SX-165
SILICON CRYSTAL
SINGLE WAVELENGTH
M
x-ray
1
1.04
1.0
I911-2
MAX II
1.04
SYNCHROTRON
MAX II BEAMLINE I911-2
10484.023
DISKS LARGE HOMOLOG 1
PDZ2 DOMAIN, RESIDUES 260-356
YES
1
man
polymer
18.038
AMMONIUM ION
1
syn
non-polymer
69.085
IMIDAZOLE
1
syn
non-polymer
18.015
water
82
nat
water
SYNAPSE-ASSOCIATED PROTEIN 97, SAP97, SAP-97, HDLG
no
no
GSKPVSEKIMEIKLIKGPKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAV
TALKNTSDFVYLKVAKPTS
GSKPVSEKIMEIKLIKGPKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAV
TALKNTSDFVYLKVAKPTS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
9606
HOMO SAPIENS
469008
ESCHERICHIA COLI
BL21(DE3)PLYSS
PRSET-SAP97-PDZ2-I342W-C378A
1
3.37
63.50
NONE
VAPOR DIFFUSION
8.4
VAPOR DIFFUSION, 100MM TRIS-HCL PH 8.4, 2.4M AMMONIUM SULPHATE
diffrn_source
exptl_crystal_grow
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
struct_site
repository
Initial release
Advisory
Version format compliance
Data collection
Data collection
Experimental preparation
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2010-03-31
1
1
2011-07-13
1
2
2018-01-17
1
3
2019-03-06
1
4
2023-12-20
_diffrn_source.pdbx_synchrotron_site
_exptl_crystal_grow.method
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
CRYSTAL STRUCTURE OF THE THIRD PDZ DOMAIN FROM THE HUMANHOMOLOG OF DISCS LARGE PROTEIN
PDBE
Y
PDBE
2010-03-04
REL
REL
NH4
AMMONIUM ION
IMD
IMIDAZOLE
HOH
water
2AWU
PDB ENTRY 2AWU
PDB
experimental model
NH4
1408
2
NH4
NH4
1408
A
IMD
1409
3
IMD
IMD
1409
A
HOH
2001
4
HOH
HOH
2001
A
HOH
2002
4
HOH
HOH
2002
A
HOH
2003
4
HOH
HOH
2003
A
HOH
2004
4
HOH
HOH
2004
A
HOH
2005
4
HOH
HOH
2005
A
HOH
2006
4
HOH
HOH
2006
A
HOH
2007
4
HOH
HOH
2007
A
HOH
2008
4
HOH
HOH
2008
A
HOH
2009
4
HOH
HOH
2009
A
HOH
2010
4
HOH
HOH
2010
A
HOH
2011
4
HOH
HOH
2011
A
HOH
2012
4
HOH
HOH
2012
A
HOH
2013
4
HOH
HOH
2013
A
HOH
2014
4
HOH
HOH
2014
A
HOH
2015
4
HOH
HOH
2015
A
HOH
2016
4
HOH
HOH
2016
A
HOH
2017
4
HOH
HOH
2017
A
HOH
2018
4
HOH
HOH
2018
A
HOH
2019
4
HOH
HOH
2019
A
HOH
2020
4
HOH
HOH
2020
A
HOH
2021
4
HOH
HOH
2021
A
HOH
2022
4
HOH
HOH
2022
A
HOH
2023
4
HOH
HOH
2023
A
HOH
2024
4
HOH
HOH
2024
A
HOH
2025
4
HOH
HOH
2025
A
HOH
2026
4
HOH
HOH
2026
A
HOH
2027
4
HOH
HOH
2027
A
HOH
2028
4
HOH
HOH
2028
A
HOH
2029
4
HOH
HOH
2029
A
HOH
2030
4
HOH
HOH
2030
A
HOH
2031
4
HOH
HOH
2031
A
HOH
2032
4
HOH
HOH
2032
A
HOH
2033
4
HOH
HOH
2033
A
HOH
2034
4
HOH
HOH
2034
A
HOH
2035
4
HOH
HOH
2035
A
HOH
2036
4
HOH
HOH
2036
A
HOH
2037
4
HOH
HOH
2037
A
HOH
2038
4
HOH
HOH
2038
A
HOH
2039
4
HOH
HOH
2039
A
HOH
2040
4
HOH
HOH
2040
A
HOH
2041
4
HOH
HOH
2041
A
HOH
2042
4
HOH
HOH
2042
A
HOH
2043
4
HOH
HOH
2043
A
HOH
2044
4
HOH
HOH
2044
A
HOH
2045
4
HOH
HOH
2045
A
HOH
2046
4
HOH
HOH
2046
A
HOH
2047
4
HOH
HOH
2047
A
HOH
2048
4
HOH
HOH
2048
A
HOH
2049
4
HOH
HOH
2049
A
HOH
2050
4
HOH
HOH
2050
A
HOH
2051
4
HOH
HOH
2051
A
HOH
2052
4
HOH
HOH
2052
A
HOH
2053
4
HOH
HOH
2053
A
HOH
2054
4
HOH
HOH
2054
A
HOH
2055
4
HOH
HOH
2055
A
HOH
2056
4
HOH
HOH
2056
A
HOH
2057
4
HOH
HOH
2057
A
HOH
2058
4
HOH
HOH
2058
A
HOH
2059
4
HOH
HOH
2059
A
HOH
2060
4
HOH
HOH
2060
A
HOH
2061
4
HOH
HOH
2061
A
HOH
2062
4
HOH
HOH
2062
A
HOH
2063
4
HOH
HOH
2063
A
HOH
2064
4
HOH
HOH
2064
A
HOH
2065
4
HOH
HOH
2065
A
HOH
2066
4
HOH
HOH
2066
A
HOH
2067
4
HOH
HOH
2067
A
HOH
2068
4
HOH
HOH
2068
A
HOH
2069
4
HOH
HOH
2069
A
HOH
2070
4
HOH
HOH
2070
A
HOH
2071
4
HOH
HOH
2071
A
HOH
2072
4
HOH
HOH
2072
A
HOH
2073
4
HOH
HOH
2073
A
HOH
2074
4
HOH
HOH
2074
A
HOH
2075
4
HOH
HOH
2075
A
HOH
2076
4
HOH
HOH
2076
A
HOH
2077
4
HOH
HOH
2077
A
HOH
2078
4
HOH
HOH
2078
A
HOH
2079
4
HOH
HOH
2079
A
HOH
2080
4
HOH
HOH
2080
A
HOH
2081
4
HOH
HOH
2081
A
HOH
2082
4
HOH
HOH
2082
A
GLY
309
n
1
GLY
309
A
SER
310
n
2
SER
310
A
LYS
311
n
3
LYS
311
A
PRO
312
n
4
PRO
312
A
VAL
313
n
5
VAL
313
A
SER
314
n
6
SER
314
A
GLU
315
n
7
GLU
315
A
LYS
316
n
8
LYS
316
A
ILE
317
n
9
ILE
317
A
MET
318
n
10
MET
318
A
GLU
319
n
11
GLU
319
A
ILE
320
n
12
ILE
320
A
LYS
321
n
13
LYS
321
A
LEU
322
n
14
LEU
322
A
ILE
323
n
15
ILE
323
A
LYS
324
n
16
LYS
324
A
GLY
325
n
17
GLY
325
A
PRO
326
n
18
PRO
326
A
LYS
327
n
19
LYS
327
A
GLY
328
n
20
GLY
328
A
LEU
329
n
21
LEU
329
A
GLY
330
n
22
GLY
330
A
PHE
331
n
23
PHE
331
A
SER
332
n
24
SER
332
A
ILE
333
n
25
ILE
333
A
ALA
334
n
26
ALA
334
A
GLY
335
n
27
GLY
335
A
GLY
336
n
28
GLY
336
A
VAL
337
n
29
VAL
337
A
GLY
338
n
30
GLY
338
A
ASN
339
n
31
ASN
339
A
GLN
340
n
32
GLN
340
A
HIS
341
n
33
HIS
341
A
TRP
342
n
34
TRP
342
A
PRO
343
n
35
PRO
343
A
GLY
344
n
36
GLY
344
A
ASP
345
n
37
ASP
345
A
ASN
346
n
38
ASN
346
A
SER
347
n
39
SER
347
A
ILE
348
n
40
ILE
348
A
TYR
349
n
41
TYR
349
A
VAL
350
n
42
VAL
350
A
THR
351
n
43
THR
351
A
LYS
352
n
44
LYS
352
A
ILE
353
n
45
ILE
353
A
ILE
354
n
46
ILE
354
A
GLU
355
n
47
GLU
355
A
GLY
356
n
48
GLY
356
A
GLY
357
n
49
GLY
357
A
ALA
358
n
50
ALA
358
A
ALA
359
n
51
ALA
359
A
HIS
360
n
52
HIS
360
A
LYS
361
n
53
LYS
361
A
ASP
362
n
54
ASP
362
A
GLY
363
n
55
GLY
363
A
LYS
364
n
56
LYS
364
A
LEU
365
n
57
LEU
365
A
GLN
366
n
58
GLN
366
A
ILE
367
n
59
ILE
367
A
GLY
368
n
60
GLY
368
A
ASP
369
n
61
ASP
369
A
LYS
370
n
62
LYS
370
A
LEU
371
n
63
LEU
371
A
LEU
372
n
64
LEU
372
A
ALA
373
n
65
ALA
373
A
VAL
374
n
66
VAL
374
A
ASN
375
n
67
ASN
375
A
ASN
376
n
68
ASN
376
A
VAL
377
n
69
VAL
377
A
ALA
378
n
70
ALA
378
A
LEU
379
n
71
LEU
379
A
GLU
380
n
72
GLU
380
A
GLU
381
n
73
GLU
381
A
VAL
382
n
74
VAL
382
A
THR
383
n
75
THR
383
A
HIS
384
n
76
HIS
384
A
GLU
385
n
77
GLU
385
A
GLU
386
n
78
GLU
386
A
ALA
387
n
79
ALA
387
A
VAL
388
n
80
VAL
388
A
THR
389
n
81
THR
389
A
ALA
390
n
82
ALA
390
A
LEU
391
n
83
LEU
391
A
LYS
392
n
84
LYS
392
A
ASN
393
n
85
ASN
393
A
THR
394
n
86
THR
394
A
SER
395
n
87
SER
395
A
ASP
396
n
88
ASP
396
A
PHE
397
n
89
PHE
397
A
VAL
398
n
90
VAL
398
A
TYR
399
n
91
TYR
399
A
LEU
400
n
92
LEU
400
A
LYS
401
n
93
LYS
401
A
VAL
402
n
94
VAL
402
A
ALA
403
n
95
ALA
403
A
LYS
404
n
96
LYS
404
A
PRO
405
n
97
PRO
405
A
THR
406
n
98
THR
406
A
SER
407
n
99
SER
407
A
4.3035
-0.5061
-0.8472
1.3123
0.6062
4.6422
-0.0756
-0.0212
-0.0649
0.0685
0.0399
-0.2384
0.2071
0.5340
0.0357
0.0267
0.0149
-0.0030
0.0782
0.0209
0.0717
refined
10.8916
-4.2617
10.8723
X-RAY DIFFRACTION
A
309
A
2082
X-RAY DIFFRACTION
1
author_and_software_defined_assembly
PISA
2
dimeric
2180
2.0
11230
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
5_555
-x,y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
322
A
N
LEU
14
A
O
VAL
398
A
O
VAL
90
A
N
ALA
403
A
N
ALA
95
A
O
LYS
370
A
O
LYS
62
A
N
VAL
374
A
N
VAL
66
A
O
VAL
377
A
O
VAL
69
A
N
LEU
322
A
N
LEU
14
A
O
VAL
398
A
O
VAL
90
A
N
ALA
403
A
N
ALA
95
A
O
LYS
370
A
O
LYS
62
A
N
LEU
371
A
N
LEU
63
A
O
ILE
348
A
O
ILE
40
A
N
THR
351
A
N
THR
43
A
O
SER
332
A
O
SER
24
A
N
VAL
377
A
N
VAL
69
A
O
VAL
374
A
O
VAL
66
1
A
A
CD1
CE1
TYR
TYR
349
349
0.093
0.015
1.389
1.482
N
1
A
ASN
339
-149.06
41.00
1
A
ASN
375
49.73
-127.01
1
A
ASN
393
-75.79
24.60
16.951
0.10
0.00
0.00
0.10
0.00
-0.20
0.947
0.921
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY
0.23236
0.19381
0.19576
2.00
29.69
516
9801
5.0
100.00
7.174
0.092
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.141
0.137
0.80
0.80
1.40
PDB ENTRY 2AWU
MAXIMUM LIKELIHOOD
MASK
2.00
29.69
82
826
6
0
738
0.022
0.022
755
1.691
1.982
1017
6.556
5.000
98
38.528
26.923
26
15.154
15.000
138
0.132
0.200
117
0.009
0.021
547
1.044
1.500
487
1.764
2.000
781
2.999
3.000
268
5.056
4.500
236
0.287
0.212
2.052
36
686
20
100.00
2.000
29.900
2X7Z
10153
0.000
0.08000
1
31.5000
20.400
96.6
0.22000
2.00
2.05
15.400
1
20.80
96.8
refinement
REFMAC
5.5.0102
data reduction
XDS
data scaling
XSCALE
phasing
PHASER
Crystal Structure of the SAP97 PDZ2 I342W C378A mutant protein domain
1
N
N
2
N
N
3
N
N
4
N
N
A
GLY
357
A
GLY
49
HELX_P
A
GLY
363
A
GLY
55
1
1
7
A
THR
383
A
THR
75
HELX_P
A
ASN
393
A
ASN
85
1
2
11
STRUCTURAL PROTEIN
SH3 DOMAIN, PHOSPHOPROTEIN, SYNAPTIC PROTEIN, HOST-VIRUS INTERACTION, STRUCTURAL PROTEIN
2X7Z
PDB
1
2X7Z
DLG1_HUMAN
UNP
1
Q12959
309
310
2X7Z
309
310
2X7Z
A
1
1
2
260
356
2X7Z
311
407
Q12959
A
2
3
99
1
ILE
engineered mutation
TRP
342
2X7Z
A
Q12959
UNP
291
34
1
CYS
engineered mutation
ALA
378
2X7Z
A
Q12959
UNP
327
70
4
5
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
317
A
ILE
9
A
ILE
323
A
ILE
15
A
PHE
397
A
PHE
89
A
ALA
403
A
ALA
95
A
LYS
370
A
LYS
62
A
VAL
374
A
VAL
66
A
VAL
377
A
VAL
69
A
ALA
378
A
ALA
70
A
ILE
317
A
ILE
9
A
ILE
323
A
ILE
15
A
PHE
397
A
PHE
89
A
ALA
403
A
ALA
95
A
LYS
370
A
LYS
62
A
VAL
374
A
VAL
66
A
ILE
348
A
ILE
40
A
ILE
353
A
ILE
45
A
PHE
331
A
PHE
23
A
GLY
335
A
GLY
27
A
VAL
377
A
VAL
69
A
ALA
378
A
ALA
70
A
LYS
370
A
LYS
62
A
VAL
374
A
VAL
66
BINDING SITE FOR RESIDUE NH4 A 1408
A
NH4
1408
Software
4
BINDING SITE FOR RESIDUE IMD A 1409
A
IMD
1409
Software
4
A
PRO
405
A
PRO
97
4
1_555
A
HOH
2017
D
HOH
4
1_555
A
HOH
2081
D
HOH
4
1_555
A
HOH
2082
D
HOH
4
1_555
A
TRP
342
A
TRP
34
4
1_555
A
TRP
342
A
TRP
34
4
7_555
A
TYR
349
A
TYR
41
4
7_555
A
GLY
368
A
GLY
60
4
7_555
95
P 43 2 2