1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Simpson, P.J. Bolam, D.N. Cooper, A. Ciruela, A. Hazlewood, G.P. Gilbert, H.J. Williamson, M.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Structure Fold.Des. FODEFH 1263 0969-2126 7 853 864 10.1016/S0969-2126(99)80108-7 10425686 A family IIb xylan-binding domain has a similar secondary structure to a homologous family IIa cellulose-binding domain but different ligand specificity. 1999 10.2210/pdb2xbd/pdb pdb_00002xbd 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 8787.418 XYLANASE D 3.2.1.8 XYLAN BINDING DOMAIN 1 1 man polymer XBD1, ENDO-1,4-BETA-XYLANASE D no no TGCSVTATRAEEWSDRFNVTYSVSGSSAWTVNLALNGSQTIQASWNANVTGSGSTRTVTPNGSGNTFGVTVMKNGSSTTP AATCAGS TGCSVTATRAEEWSDRFNVTYSVSGSSAWTVNLALNGSQTIQASWNANVTGSGSTRTVTPNGSGNTFGVTVMKNGSSTTP AATCAGS A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Cellulomonas Escherichia sample 1708 Cellulomonas fimi 562 Escherichia coli JM83 database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Database references Derived calculations Other 1 0 1999-07-21 1 1 2008-03-25 1 2 2011-07-13 1 3 2022-03-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site Y BNL 1998-10-27 REL REL THE STRUCTURE WAS DETERMINED USING HETERONUCLEAR NMR SPECTROSCOPY ON A UNIFORMLY 15N-LABELLED SAMPLE OF XBD1 MINIMIZED AVERAGE STRUCTURE, CALCULATED FROM 38 LOWEST ENERGY STRUCTURES 50 1 TOCSY DQF-COSY NOESY E.COSY HSQC NOESY-HMQC TOCSY-HMQC HNHA HNHB 5.0 310 K YASAP HYBRID DISTANCE GEOMETRY/ SIMULATED ANNEALING BRUNGER refinement X-PLOR 3.1 structure solution MSI FELIX 97.0 500 Bruker DRX500 600 Bruker DRX600 800 Bruker DRX800 THR 247 n 1 THR 247 A GLY 248 n 2 GLY 248 A CYS 249 n 3 CYS 249 A SER 250 n 4 SER 250 A VAL 251 n 5 VAL 251 A THR 252 n 6 THR 252 A ALA 253 n 7 ALA 253 A THR 254 n 8 THR 254 A ARG 255 n 9 ARG 255 A ALA 256 n 10 ALA 256 A GLU 257 n 11 GLU 257 A GLU 258 n 12 GLU 258 A TRP 259 n 13 TRP 259 A SER 260 n 14 SER 260 A ASP 261 n 15 ASP 261 A ARG 262 n 16 ARG 262 A PHE 263 n 17 PHE 263 A ASN 264 n 18 ASN 264 A VAL 265 n 19 VAL 265 A THR 266 n 20 THR 266 A TYR 267 n 21 TYR 267 A SER 268 n 22 SER 268 A VAL 269 n 23 VAL 269 A SER 270 n 24 SER 270 A GLY 271 n 25 GLY 271 A SER 272 n 26 SER 272 A SER 273 n 27 SER 273 A ALA 274 n 28 ALA 274 A TRP 275 n 29 TRP 275 A THR 276 n 30 THR 276 A VAL 277 n 31 VAL 277 A ASN 278 n 32 ASN 278 A LEU 279 n 33 LEU 279 A ALA 280 n 34 ALA 280 A LEU 281 n 35 LEU 281 A ASN 282 n 36 ASN 282 A GLY 283 n 37 GLY 283 A SER 284 n 38 SER 284 A GLN 285 n 39 GLN 285 A THR 286 n 40 THR 286 A ILE 287 n 41 ILE 287 A GLN 288 n 42 GLN 288 A ALA 289 n 43 ALA 289 A SER 290 n 44 SER 290 A TRP 291 n 45 TRP 291 A ASN 292 n 46 ASN 292 A ALA 293 n 47 ALA 293 A ASN 294 n 48 ASN 294 A VAL 295 n 49 VAL 295 A THR 296 n 50 THR 296 A GLY 297 n 51 GLY 297 A SER 298 n 52 SER 298 A GLY 299 n 53 GLY 299 A SER 300 n 54 SER 300 A THR 301 n 55 THR 301 A ARG 302 n 56 ARG 302 A THR 303 n 57 THR 303 A VAL 304 n 58 VAL 304 A THR 305 n 59 THR 305 A PRO 306 n 60 PRO 306 A ASN 307 n 61 ASN 307 A GLY 308 n 62 GLY 308 A SER 309 n 63 SER 309 A GLY 310 n 64 GLY 310 A ASN 311 n 65 ASN 311 A THR 312 n 66 THR 312 A PHE 313 n 67 PHE 313 A GLY 314 n 68 GLY 314 A VAL 315 n 69 VAL 315 A THR 316 n 70 THR 316 A VAL 317 n 71 VAL 317 A MET 318 n 72 MET 318 A LYS 319 n 73 LYS 319 A ASN 320 n 74 ASN 320 A GLY 321 n 75 GLY 321 A SER 322 n 76 SER 322 A SER 323 n 77 SER 323 A THR 324 n 78 THR 324 A THR 325 n 79 THR 325 A PRO 326 n 80 PRO 326 A ALA 327 n 81 ALA 327 A ALA 328 n 82 ALA 328 A THR 329 n 83 THR 329 A CYS 330 n 84 CYS 330 A ALA 331 n 85 ALA 331 A GLY 332 n 86 GLY 332 A SER 333 n 87 SER 333 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O THR 252 A O THR 6 A N SER 268 A N SER 22 A O PHE 263 A O PHE 17 A N VAL 317 A N VAL 71 A O GLY 314 A O GLY 68 A N TRP 291 A N TRP 45 A O THR 329 A O THR 83 A N ASN 278 A N ASN 32 A O VAL 277 A O VAL 31 A N VAL 304 A N VAL 58 A O THR 303 A O THR 57 A N THR 296 A N THR 50 1 A ARG 255 0.234 SIDE CHAIN 1 A ARG 262 0.317 SIDE CHAIN 1 A ARG 302 0.310 SIDE CHAIN 1 A ALA 256 -92.05 -80.56 1 A ARG 262 174.80 170.15 1 A ALA 293 177.79 149.94 1 A LYS 319 -60.30 -73.88 1 A THR 325 -47.03 159.68 model building X-PLOR 3.1 refinement X-PLOR 3.1 phasing X-PLOR 3.1 INTERNAL XYLAN BINDING DOMAIN FROM CELLULOMONAS FIMI XYLANASE D, NMR, MINIMIZED AVERAGE STRUCTURE 1 Y N disulf 2.020 A CYS 249 A SG CYS 3 1_555 A CYS 330 A SG CYS 84 1_555 HYDROLASE HYDROLASE, XYLAN BINDING DOMAIN, XYLANASE, BETA-SHEET XYND_CELFI UNP 1 1 P54865 MSDSFEATRTTRRRRPLQALTGLLAAGALVAGALAAASPAAAAVTSNTTGTHDGYFYSFWTDSPGSVSMDLNSGGGYTRW SNTGNFVAGKGWSTGGRKTVSYSGQFNPSRNAYLTLYGWTQSPLVEYYIVDSWGTYRPTGTFMGTVTSDGGTYDIYRTQR VNKPSIEGDSSTFYQYWSVRQQKRTGGTITSGNHFDAWASKGMNLGRHNYMIMATEGYQSSGSSSITVSEGSGGGGGGDT GGGGGSTGCSVTATRAEEWSDRFNVTYSVSGSSAWTVNLALNGSQTIQASWNANVTGSGSTRTVTPNGSGNTFGVTVMKN GSSTTPAATCAGSGGGTATPTPTPTPTPTPQSCSAGYVGLTFDDGPNTGTTNQILSTLTQYGATATVFPTGQNAQGNPSL MQAYKNAGVQIGNHSWDHPHLVNMSQSDMQSQLTRTQQAIQQTAGVTPTLFRPPYGESNATLRQVESSLGLREIIWDVDS QDWNNASASQIRQAASRLTNGQIILMHDWPAATVQALPGILQDLRSRNLCTGHISSSTGRAVAPSSAGGGGGGGGGTGSC SVSAVRGEEWADRFNVTYSVSGSSSWVVTLGLNGGQSVQSSWNAALTGSSGTVTARPNGSGNSFGVTFYKNGSSATPGAT CATG 247 333 2XBD 247 333 P54865 A 1 1 87 4 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A THR 252 A THR 6 A ARG 255 A ARG 9 A ARG 262 A ARG 16 A SER 268 A SER 22 A THR 312 A THR 66 A MET 318 A MET 72 A ILE 287 A ILE 41 A TRP 291 A TRP 45 A ALA 328 A ALA 82 A CYS 330 A CYS 84 A VAL 277 A VAL 31 A LEU 279 A LEU 33 A ARG 302 A ARG 56 A THR 305 A THR 59 A ASN 294 A ASN 48 A THR 296 A THR 50 BINDING SITE TRYPTOPHANS Unknown 2 A TRP 259 A TRP 13 2 1_555 A TRP 291 A TRP 45 2 1_555 1 P 1