0.008138
0.004698
0.000000
0.000000
0.009397
0.000000
0.000000
0.000000
0.021164
0.00000
0.00000
0.00000
Angiolini, M.
Banfi, P.
Casale, E.
Casuscelli, F.
Fiorelli, C.
Saccardo, M.B.
Silvagni, M.
Zuccotto, F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
122.886
122.886
47.249
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C22 H25 N7 O
403.480
8-(CYCLOHEXA-2,5-DIEN-1-YLIDENEAMINO)-1-(PIPERIDIN-4-YLMETHYL)-4,5-DIHYDRO-1H-PYRAZOLO[4,3-H]QUINAZOLINE-3-CARBOXAMIDE
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H8 N O6 P
185.072
n
PHOSPHOSERINE
PHOSPHONOSERINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
O
N
75
N
C
N
76
N
N
Y
77
N
C
Y
78
N
C
N
79
N
C
Y
80
N
N
Y
81
N
N
N
82
N
C
N
83
N
C
N
84
N
C
N
85
N
C
N
86
N
N
N
87
N
C
N
88
N
C
Y
89
N
C
Y
90
N
C
Y
91
N
N
Y
92
N
C
Y
93
N
N
Y
94
N
C
Y
95
N
C
N
96
N
C
N
97
N
N
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
C
N
102
N
C
N
103
N
C
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
N
N
130
R
C
N
131
N
C
N
132
N
O
N
133
N
C
N
134
N
S
N
135
N
O
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
N
N
144
S
C
N
145
N
C
N
146
N
O
N
147
N
C
N
148
N
C
N
149
N
C
N
150
N
O
N
151
N
N
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
N
N
164
S
C
N
165
N
C
N
166
N
O
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
O
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
N
N
183
N
C
N
184
N
C
N
185
N
O
N
186
N
O
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
C
N
193
N
O
N
194
N
C
N
195
N
O
N
196
N
C
N
197
N
O
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
N
C
Y
211
N
C
Y
212
N
N
Y
213
N
C
Y
214
N
C
Y
215
N
N
N
216
N
O
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
S
C
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
C
N
282
N
N
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
N
N
300
S
C
N
301
N
C
N
302
N
O
N
303
N
C
N
304
N
C
N
305
N
S
N
306
N
C
N
307
N
O
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
N
N
320
S
C
N
321
N
C
N
322
N
O
N
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
N
N
343
S
C
N
344
N
C
N
345
N
O
N
346
N
C
N
347
N
C
N
348
N
C
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
N
N
360
S
C
N
361
N
C
N
362
N
O
N
363
N
C
N
364
N
O
N
365
N
O
N
366
N
P
N
367
N
O
N
368
N
O
N
369
N
O
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
N
N
379
S
C
N
380
N
C
N
381
N
O
N
382
N
C
N
383
N
O
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
S
N
393
N
O
N
394
N
O
N
395
N
O
N
396
N
O
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
R
C
N
402
N
O
N
403
N
C
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
N
N
415
S
C
N
416
N
C
N
417
N
O
N
418
N
C
Y
419
N
C
Y
420
N
C
Y
421
N
C
Y
422
N
N
Y
423
N
C
Y
424
N
C
Y
425
N
C
Y
426
N
C
Y
427
N
C
N
428
N
O
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
N
N
442
S
C
N
443
N
C
N
444
N
O
N
445
N
C
Y
446
N
C
Y
447
N
C
Y
448
N
C
Y
449
N
C
Y
450
N
C
Y
451
N
C
N
452
N
O
N
453
N
O
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
N
N
466
S
C
N
467
N
C
N
468
N
O
N
469
N
C
N
470
N
C
N
471
N
C
N
472
N
O
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
Y
73
N
sing
Y
74
N
doub
N
75
N
sing
Y
76
N
doub
N
77
N
sing
Y
78
N
sing
N
79
N
sing
Y
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
Y
88
N
sing
Y
89
N
sing
Y
90
N
doub
Y
91
N
doub
Y
92
N
sing
N
93
N
sing
Y
94
N
doub
Y
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
Y
212
N
sing
Y
213
N
doub
Y
214
N
doub
N
215
N
sing
Y
216
N
sing
N
217
N
sing
Y
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
doub
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
doub
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
Y
320
N
doub
Y
321
N
sing
Y
322
N
sing
N
323
N
sing
Y
324
N
doub
N
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
doub
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
doub
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
doub
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
Y
411
N
doub
Y
412
N
sing
Y
413
N
sing
N
414
N
sing
Y
415
N
doub
Y
416
N
sing
Y
417
N
sing
N
418
N
sing
Y
419
N
sing
Y
420
N
doub
N
421
N
sing
Y
422
N
doub
N
423
N
sing
Y
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
doub
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
Y
439
N
doub
Y
440
N
sing
Y
441
N
sing
N
442
N
sing
Y
443
N
doub
N
444
N
sing
Y
445
N
doub
N
446
N
sing
Y
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
doub
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
UK
Bioorg.Med.Chem.Lett.
BMCLE8
1127
0960-894X
20
4095
10.1016/J.BMCL.2010.05.070
20621725
Structure-Based Optimization of Potent Pdk1 Inhibitors.
2010
10.2210/pdb2xch/pdb
pdb_00002xch
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
2006-11-27
ADSC CCD
SINGLE WAVELENGTH
M
x-ray
1
0.979
1.0
ID23-1
ESRF
0.979
SYNCHROTRON
ESRF BEAMLINE ID23-1
35427.609
3-PHOSPHOINOSITIDE DEPENDENT PROTEIN KINASE 1
2.7.11.1
KINASE CATALYTIC DOMAIN, RESIDUES 1-309
1
man
polymer
403.480
8-(CYCLOHEXA-2,5-DIEN-1-YLIDENEAMINO)-1-(PIPERIDIN-4-YLMETHYL)-4,5-DIHYDRO-1H-PYRAZOLO[4,3-H]QUINAZOLINE-3-CARBOXAMIDE
1
syn
non-polymer
92.094
GLYCEROL
6
syn
non-polymer
96.063
SULFATE ION
6
syn
non-polymer
18.015
water
150
nat
water
HPDK1
no
yes
MDGTAAEPRPGAGSLQHAQPPPQPRKKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRE
RDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPEN
ILLNEDMHIQITDFGTAKVLSPESKQARAN(SEP)FVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGN
EYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKLT
MDGTAAEPRPGAGSLQHAQPPPQPRKKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRE
RDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPEN
ILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLI
FQKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKLT
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
FALL ARMYWORM
sample
9606
HOMO SAPIENS
7108
SPODOPTERA FRUGIPERDA
BACULOVIRUS
1
2.9
57.3
NONE
2.0 M AMMONIUM SULFATE,0.1 M TRIS PH8.5
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2010-07-28
1
1
2011-05-08
1
2
2011-07-13
1
3
2023-12-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
CRYSTAL STRUCTURE OF PDK1 IN COMPLEX WITH A PYRAZOLOQUINAZOLINE INHIBITOR
STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-1
STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH STAUROSPORINE
CRYSTAL STRUCTURE OF N1-[3-[[5-BROMO-2-[[ 3-[(1-PYRROLIDINYLCARBONYL)AMINO]PHENYL]AMINO ]-4-PYRIMIDINYL]AMINO]PROPYL]-2,2- DIMETHYLPROPANEDIAMIDECOMPLEXED WITH HUMAN PDK1
STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-3
CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN HOMOLOGY (PH) DOMAIN BOUND TO INOSITOL (1, 3,4,5)-TETRAKISPHOSPHATE
STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH UCN-01
HIGH RESOLUTION CRYSTAL STRUCTURE OF THE HUMAN PDK1 CATALYTIC DOMAIN
STRUCTURE OF THE PDK1 PH DOMAIN K465E MUTANT
STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH LY333531
CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN HOMOLOGY (PH) DOMAIN BOUND TO DIC4- PHOSPHATIDYLINOSITOL (3,4,5)-TRISPHOSPHATE
STRUCTURE OF PDK1-S241A MUTANT KINASE DOMAIN
CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN HOMOLOGY (PH) DOMAIN
STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-2
STRUCTURE OF HUMAN PDK1 KINASE DOMAIN IN COMPLEX WITH BIM-8
PDBE
Y
PDBE
2010-04-23
REL
REL
CKG
8-(CYCLOHEXA-2,5-DIEN-1-YLIDENEAMINO)-1-(PIPERIDIN-4-YLMETHYL)-4,5-DIHYDRO-1H-PYRAZOLO[4,3-H]QUINAZOLINE-3-CARBOXAMIDE
GOL
GLYCEROL
SO4
SULFATE ION
HOH
water
1H1W
PDB ENTRY 1H1W
PDB
experimental model
CKG
1360
2
CKG
CKG
1360
A
GOL
1361
3
GOL
GOL
1361
A
GOL
1362
3
GOL
GOL
1362
A
GOL
1363
3
GOL
GOL
1363
A
GOL
1365
3
GOL
GOL
1365
A
GOL
1366
3
GOL
GOL
1366
A
GOL
1367
3
GOL
GOL
1367
A
SO4
1368
4
SO4
SO4
1368
A
SO4
1369
4
SO4
SO4
1369
A
SO4
1370
4
SO4
SO4
1370
A
SO4
1371
4
SO4
SO4
1371
A
SO4
1372
4
SO4
SO4
1372
A
SO4
1373
4
SO4
SO4
1373
A
HOH
2001
5
HOH
HOH
2001
A
HOH
2002
5
HOH
HOH
2002
A
HOH
2003
5
HOH
HOH
2003
A
HOH
2004
5
HOH
HOH
2004
A
HOH
2005
5
HOH
HOH
2005
A
HOH
2006
5
HOH
HOH
2006
A
HOH
2007
5
HOH
HOH
2007
A
HOH
2008
5
HOH
HOH
2008
A
HOH
2009
5
HOH
HOH
2009
A
HOH
2010
5
HOH
HOH
2010
A
HOH
2011
5
HOH
HOH
2011
A
HOH
2012
5
HOH
HOH
2012
A
HOH
2013
5
HOH
HOH
2013
A
HOH
2014
5
HOH
HOH
2014
A
HOH
2015
5
HOH
HOH
2015
A
HOH
2016
5
HOH
HOH
2016
A
HOH
2017
5
HOH
HOH
2017
A
HOH
2018
5
HOH
HOH
2018
A
HOH
2019
5
HOH
HOH
2019
A
HOH
2020
5
HOH
HOH
2020
A
HOH
2021
5
HOH
HOH
2021
A
HOH
2022
5
HOH
HOH
2022
A
HOH
2023
5
HOH
HOH
2023
A
HOH
2024
5
HOH
HOH
2024
A
HOH
2025
5
HOH
HOH
2025
A
HOH
2026
5
HOH
HOH
2026
A
HOH
2027
5
HOH
HOH
2027
A
HOH
2028
5
HOH
HOH
2028
A
HOH
2029
5
HOH
HOH
2029
A
HOH
2030
5
HOH
HOH
2030
A
HOH
2031
5
HOH
HOH
2031
A
HOH
2032
5
HOH
HOH
2032
A
HOH
2033
5
HOH
HOH
2033
A
HOH
2034
5
HOH
HOH
2034
A
HOH
2035
5
HOH
HOH
2035
A
HOH
2036
5
HOH
HOH
2036
A
HOH
2037
5
HOH
HOH
2037
A
HOH
2038
5
HOH
HOH
2038
A
HOH
2039
5
HOH
HOH
2039
A
HOH
2040
5
HOH
HOH
2040
A
HOH
2041
5
HOH
HOH
2041
A
HOH
2042
5
HOH
HOH
2042
A
HOH
2043
5
HOH
HOH
2043
A
HOH
2044
5
HOH
HOH
2044
A
HOH
2045
5
HOH
HOH
2045
A
HOH
2046
5
HOH
HOH
2046
A
HOH
2047
5
HOH
HOH
2047
A
HOH
2048
5
HOH
HOH
2048
A
HOH
2049
5
HOH
HOH
2049
A
HOH
2050
5
HOH
HOH
2050
A
HOH
2051
5
HOH
HOH
2051
A
HOH
2052
5
HOH
HOH
2052
A
HOH
2053
5
HOH
HOH
2053
A
HOH
2054
5
HOH
HOH
2054
A
HOH
2055
5
HOH
HOH
2055
A
HOH
2056
5
HOH
HOH
2056
A
HOH
2057
5
HOH
HOH
2057
A
HOH
2058
5
HOH
HOH
2058
A
HOH
2059
5
HOH
HOH
2059
A
HOH
2060
5
HOH
HOH
2060
A
HOH
2061
5
HOH
HOH
2061
A
HOH
2062
5
HOH
HOH
2062
A
HOH
2063
5
HOH
HOH
2063
A
HOH
2064
5
HOH
HOH
2064
A
HOH
2065
5
HOH
HOH
2065
A
HOH
2066
5
HOH
HOH
2066
A
HOH
2067
5
HOH
HOH
2067
A
HOH
2068
5
HOH
HOH
2068
A
HOH
2069
5
HOH
HOH
2069
A
HOH
2070
5
HOH
HOH
2070
A
HOH
2071
5
HOH
HOH
2071
A
HOH
2072
5
HOH
HOH
2072
A
HOH
2073
5
HOH
HOH
2073
A
HOH
2074
5
HOH
HOH
2074
A
HOH
2075
5
HOH
HOH
2075
A
HOH
2076
5
HOH
HOH
2076
A
HOH
2077
5
HOH
HOH
2077
A
HOH
2078
5
HOH
HOH
2078
A
HOH
2079
5
HOH
HOH
2079
A
HOH
2080
5
HOH
HOH
2080
A
HOH
2081
5
HOH
HOH
2081
A
HOH
2082
5
HOH
HOH
2082
A
HOH
2083
5
HOH
HOH
2083
A
HOH
2084
5
HOH
HOH
2084
A
HOH
2085
5
HOH
HOH
2085
A
HOH
2086
5
HOH
HOH
2086
A
HOH
2087
5
HOH
HOH
2087
A
HOH
2088
5
HOH
HOH
2088
A
HOH
2089
5
HOH
HOH
2089
A
HOH
2090
5
HOH
HOH
2090
A
HOH
2091
5
HOH
HOH
2091
A
HOH
2092
5
HOH
HOH
2092
A
HOH
2093
5
HOH
HOH
2093
A
HOH
2094
5
HOH
HOH
2094
A
HOH
2095
5
HOH
HOH
2095
A
HOH
2096
5
HOH
HOH
2096
A
HOH
2097
5
HOH
HOH
2097
A
HOH
2098
5
HOH
HOH
2098
A
HOH
2099
5
HOH
HOH
2099
A
HOH
2100
5
HOH
HOH
2100
A
HOH
2101
5
HOH
HOH
2101
A
HOH
2102
5
HOH
HOH
2102
A
HOH
2103
5
HOH
HOH
2103
A
HOH
2104
5
HOH
HOH
2104
A
HOH
2105
5
HOH
HOH
2105
A
HOH
2106
5
HOH
HOH
2106
A
HOH
2107
5
HOH
HOH
2107
A
HOH
2108
5
HOH
HOH
2108
A
HOH
2109
5
HOH
HOH
2109
A
HOH
2110
5
HOH
HOH
2110
A
HOH
2111
5
HOH
HOH
2111
A
HOH
2112
5
HOH
HOH
2112
A
HOH
2113
5
HOH
HOH
2113
A
HOH
2114
5
HOH
HOH
2114
A
HOH
2115
5
HOH
HOH
2115
A
HOH
2116
5
HOH
HOH
2116
A
HOH
2117
5
HOH
HOH
2117
A
HOH
2118
5
HOH
HOH
2118
A
HOH
2119
5
HOH
HOH
2119
A
HOH
2120
5
HOH
HOH
2120
A
HOH
2121
5
HOH
HOH
2121
A
HOH
2122
5
HOH
HOH
2122
A
HOH
2123
5
HOH
HOH
2123
A
HOH
2124
5
HOH
HOH
2124
A
HOH
2125
5
HOH
HOH
2125
A
HOH
2126
5
HOH
HOH
2126
A
HOH
2127
5
HOH
HOH
2127
A
HOH
2128
5
HOH
HOH
2128
A
HOH
2129
5
HOH
HOH
2129
A
HOH
2130
5
HOH
HOH
2130
A
HOH
2131
5
HOH
HOH
2131
A
HOH
2132
5
HOH
HOH
2132
A
HOH
2133
5
HOH
HOH
2133
A
HOH
2134
5
HOH
HOH
2134
A
HOH
2135
5
HOH
HOH
2135
A
HOH
2136
5
HOH
HOH
2136
A
HOH
2137
5
HOH
HOH
2137
A
HOH
2138
5
HOH
HOH
2138
A
HOH
2139
5
HOH
HOH
2139
A
HOH
2140
5
HOH
HOH
2140
A
HOH
2141
5
HOH
HOH
2141
A
HOH
2142
5
HOH
HOH
2142
A
HOH
2143
5
HOH
HOH
2143
A
HOH
2144
5
HOH
HOH
2144
A
HOH
2145
5
HOH
HOH
2145
A
HOH
2146
5
HOH
HOH
2146
A
HOH
2147
5
HOH
HOH
2147
A
HOH
2148
5
HOH
HOH
2148
A
HOH
2149
5
HOH
HOH
2149
A
HOH
2150
5
HOH
HOH
2150
A
n
1
51
A
n
2
52
A
n
3
53
A
n
4
54
A
n
5
55
A
n
6
56
A
n
7
57
A
n
8
58
A
n
9
59
A
n
10
60
A
n
11
61
A
n
12
62
A
n
13
63
A
n
14
64
A
n
15
65
A
n
16
66
A
n
17
67
A
n
18
68
A
n
19
69
A
n
20
70
A
n
21
71
A
n
22
72
A
GLN
73
n
23
GLN
73
A
PRO
74
n
24
PRO
74
A
ARG
75
n
25
ARG
75
A
LYS
76
n
26
LYS
76
A
LYS
77
n
27
LYS
77
A
ARG
78
n
28
ARG
78
A
PRO
79
n
29
PRO
79
A
GLU
80
n
30
GLU
80
A
ASP
81
n
31
ASP
81
A
PHE
82
n
32
PHE
82
A
LYS
83
n
33
LYS
83
A
PHE
84
n
34
PHE
84
A
GLY
85
n
35
GLY
85
A
LYS
86
n
36
LYS
86
A
ILE
87
n
37
ILE
87
A
LEU
88
n
38
LEU
88
A
GLY
89
n
39
GLY
89
A
GLU
90
n
40
GLU
90
A
GLY
91
n
41
GLY
91
A
SER
92
n
42
SER
92
A
PHE
93
n
43
PHE
93
A
SER
94
n
44
SER
94
A
THR
95
n
45
THR
95
A
VAL
96
n
46
VAL
96
A
VAL
97
n
47
VAL
97
A
LEU
98
n
48
LEU
98
A
ALA
99
n
49
ALA
99
A
ARG
100
n
50
ARG
100
A
GLU
101
n
51
GLU
101
A
LEU
102
n
52
LEU
102
A
ALA
103
n
53
ALA
103
A
THR
104
n
54
THR
104
A
SER
105
n
55
SER
105
A
ARG
106
n
56
ARG
106
A
GLU
107
n
57
GLU
107
A
TYR
108
n
58
TYR
108
A
ALA
109
n
59
ALA
109
A
ILE
110
n
60
ILE
110
A
LYS
111
n
61
LYS
111
A
ILE
112
n
62
ILE
112
A
LEU
113
n
63
LEU
113
A
GLU
114
n
64
GLU
114
A
LYS
115
n
65
LYS
115
A
ARG
116
n
66
ARG
116
A
HIS
117
n
67
HIS
117
A
ILE
118
n
68
ILE
118
A
ILE
119
n
69
ILE
119
A
LYS
120
n
70
LYS
120
A
GLU
121
n
71
GLU
121
A
ASN
122
n
72
ASN
122
A
LYS
123
n
73
LYS
123
A
VAL
124
n
74
VAL
124
A
PRO
125
n
75
PRO
125
A
TYR
126
n
76
TYR
126
A
VAL
127
n
77
VAL
127
A
THR
128
n
78
THR
128
A
ARG
129
n
79
ARG
129
A
GLU
130
n
80
GLU
130
A
ARG
131
n
81
ARG
131
A
ASP
132
n
82
ASP
132
A
VAL
133
n
83
VAL
133
A
MET
134
n
84
MET
134
A
SER
135
n
85
SER
135
A
ARG
136
n
86
ARG
136
A
LEU
137
n
87
LEU
137
A
ASP
138
n
88
ASP
138
A
HIS
139
n
89
HIS
139
A
PRO
140
n
90
PRO
140
A
PHE
141
n
91
PHE
141
A
PHE
142
n
92
PHE
142
A
VAL
143
n
93
VAL
143
A
LYS
144
n
94
LYS
144
A
LEU
145
n
95
LEU
145
A
TYR
146
n
96
TYR
146
A
PHE
147
n
97
PHE
147
A
THR
148
n
98
THR
148
A
PHE
149
n
99
PHE
149
A
GLN
150
n
100
GLN
150
A
ASP
151
n
101
ASP
151
A
ASP
152
n
102
ASP
152
A
GLU
153
n
103
GLU
153
A
LYS
154
n
104
LYS
154
A
LEU
155
n
105
LEU
155
A
TYR
156
n
106
TYR
156
A
PHE
157
n
107
PHE
157
A
GLY
158
n
108
GLY
158
A
LEU
159
n
109
LEU
159
A
SER
160
n
110
SER
160
A
TYR
161
n
111
TYR
161
A
ALA
162
n
112
ALA
162
A
LYS
163
n
113
LYS
163
A
ASN
164
n
114
ASN
164
A
GLY
165
n
115
GLY
165
A
GLU
166
n
116
GLU
166
A
LEU
167
n
117
LEU
167
A
LEU
168
n
118
LEU
168
A
LYS
169
n
119
LYS
169
A
TYR
170
n
120
TYR
170
A
ILE
171
n
121
ILE
171
A
ARG
172
n
122
ARG
172
A
LYS
173
n
123
LYS
173
A
ILE
174
n
124
ILE
174
A
GLY
175
n
125
GLY
175
A
SER
176
n
126
SER
176
A
PHE
177
n
127
PHE
177
A
ASP
178
n
128
ASP
178
A
GLU
179
n
129
GLU
179
A
THR
180
n
130
THR
180
A
CYS
181
n
131
CYS
181
A
THR
182
n
132
THR
182
A
ARG
183
n
133
ARG
183
A
PHE
184
n
134
PHE
184
A
TYR
185
n
135
TYR
185
A
THR
186
n
136
THR
186
A
ALA
187
n
137
ALA
187
A
GLU
188
n
138
GLU
188
A
ILE
189
n
139
ILE
189
A
VAL
190
n
140
VAL
190
A
SER
191
n
141
SER
191
A
ALA
192
n
142
ALA
192
A
LEU
193
n
143
LEU
193
A
GLU
194
n
144
GLU
194
A
TYR
195
n
145
TYR
195
A
LEU
196
n
146
LEU
196
A
HIS
197
n
147
HIS
197
A
GLY
198
n
148
GLY
198
A
LYS
199
n
149
LYS
199
A
GLY
200
n
150
GLY
200
A
ILE
201
n
151
ILE
201
A
ILE
202
n
152
ILE
202
A
HIS
203
n
153
HIS
203
A
ARG
204
n
154
ARG
204
A
ASP
205
n
155
ASP
205
A
LEU
206
n
156
LEU
206
A
LYS
207
n
157
LYS
207
A
PRO
208
n
158
PRO
208
A
GLU
209
n
159
GLU
209
A
ASN
210
n
160
ASN
210
A
ILE
211
n
161
ILE
211
A
LEU
212
n
162
LEU
212
A
LEU
213
n
163
LEU
213
A
ASN
214
n
164
ASN
214
A
GLU
215
n
165
GLU
215
A
ASP
216
n
166
ASP
216
A
MET
217
n
167
MET
217
A
HIS
218
n
168
HIS
218
A
ILE
219
n
169
ILE
219
A
GLN
220
n
170
GLN
220
A
ILE
221
n
171
ILE
221
A
THR
222
n
172
THR
222
A
ASP
223
n
173
ASP
223
A
PHE
224
n
174
PHE
224
A
GLY
225
n
175
GLY
225
A
THR
226
n
176
THR
226
A
ALA
227
n
177
ALA
227
A
LYS
228
n
178
LYS
228
A
VAL
229
n
179
VAL
229
A
LEU
230
n
180
LEU
230
A
SER
231
n
181
SER
231
A
n
182
232
A
n
183
233
A
n
184
234
A
n
185
235
A
n
186
236
A
n
187
237
A
n
188
238
A
n
189
239
A
ASN
240
n
190
ASN
240
A
SEP
241
n
191
SEP
241
A
PHE
242
n
192
PHE
242
A
VAL
243
n
193
VAL
243
A
GLY
244
n
194
GLY
244
A
THR
245
n
195
THR
245
A
ALA
246
n
196
ALA
246
A
GLN
247
n
197
GLN
247
A
TYR
248
n
198
TYR
248
A
VAL
249
n
199
VAL
249
A
SER
250
n
200
SER
250
A
PRO
251
n
201
PRO
251
A
GLU
252
n
202
GLU
252
A
LEU
253
n
203
LEU
253
A
LEU
254
n
204
LEU
254
A
THR
255
n
205
THR
255
A
GLU
256
n
206
GLU
256
A
LYS
257
n
207
LYS
257
A
SER
258
n
208
SER
258
A
ALA
259
n
209
ALA
259
A
CYS
260
n
210
CYS
260
A
LYS
261
n
211
LYS
261
A
SER
262
n
212
SER
262
A
SER
263
n
213
SER
263
A
ASP
264
n
214
ASP
264
A
LEU
265
n
215
LEU
265
A
TRP
266
n
216
TRP
266
A
ALA
267
n
217
ALA
267
A
LEU
268
n
218
LEU
268
A
GLY
269
n
219
GLY
269
A
CYS
270
n
220
CYS
270
A
ILE
271
n
221
ILE
271
A
ILE
272
n
222
ILE
272
A
TYR
273
n
223
TYR
273
A
GLN
274
n
224
GLN
274
A
LEU
275
n
225
LEU
275
A
VAL
276
n
226
VAL
276
A
ALA
277
n
227
ALA
277
A
GLY
278
n
228
GLY
278
A
LEU
279
n
229
LEU
279
A
PRO
280
n
230
PRO
280
A
PRO
281
n
231
PRO
281
A
PHE
282
n
232
PHE
282
A
ARG
283
n
233
ARG
283
A
ALA
284
n
234
ALA
284
A
GLY
285
n
235
GLY
285
A
ASN
286
n
236
ASN
286
A
GLU
287
n
237
GLU
287
A
TYR
288
n
238
TYR
288
A
LEU
289
n
239
LEU
289
A
ILE
290
n
240
ILE
290
A
PHE
291
n
241
PHE
291
A
GLN
292
n
242
GLN
292
A
LYS
293
n
243
LYS
293
A
ILE
294
n
244
ILE
294
A
ILE
295
n
245
ILE
295
A
LYS
296
n
246
LYS
296
A
LEU
297
n
247
LEU
297
A
GLU
298
n
248
GLU
298
A
TYR
299
n
249
TYR
299
A
ASP
300
n
250
ASP
300
A
PHE
301
n
251
PHE
301
A
PRO
302
n
252
PRO
302
A
GLU
303
n
253
GLU
303
A
LYS
304
n
254
LYS
304
A
PHE
305
n
255
PHE
305
A
PHE
306
n
256
PHE
306
A
PRO
307
n
257
PRO
307
A
LYS
308
n
258
LYS
308
A
ALA
309
n
259
ALA
309
A
ARG
310
n
260
ARG
310
A
ASP
311
n
261
ASP
311
A
LEU
312
n
262
LEU
312
A
VAL
313
n
263
VAL
313
A
GLU
314
n
264
GLU
314
A
LYS
315
n
265
LYS
315
A
LEU
316
n
266
LEU
316
A
LEU
317
n
267
LEU
317
A
VAL
318
n
268
VAL
318
A
LEU
319
n
269
LEU
319
A
ASP
320
n
270
ASP
320
A
ALA
321
n
271
ALA
321
A
THR
322
n
272
THR
322
A
LYS
323
n
273
LYS
323
A
ARG
324
n
274
ARG
324
A
LEU
325
n
275
LEU
325
A
GLY
326
n
276
GLY
326
A
CYS
327
n
277
CYS
327
A
GLU
328
n
278
GLU
328
A
GLU
329
n
279
GLU
329
A
MET
330
n
280
MET
330
A
GLU
331
n
281
GLU
331
A
GLY
332
n
282
GLY
332
A
TYR
333
n
283
TYR
333
A
GLY
334
n
284
GLY
334
A
PRO
335
n
285
PRO
335
A
LEU
336
n
286
LEU
336
A
LYS
337
n
287
LYS
337
A
ALA
338
n
288
ALA
338
A
HIS
339
n
289
HIS
339
A
PRO
340
n
290
PRO
340
A
PHE
341
n
291
PHE
341
A
PHE
342
n
292
PHE
342
A
GLU
343
n
293
GLU
343
A
SER
344
n
294
SER
344
A
VAL
345
n
295
VAL
345
A
THR
346
n
296
THR
346
A
TRP
347
n
297
TRP
347
A
GLU
348
n
298
GLU
348
A
ASN
349
n
299
ASN
349
A
LEU
350
n
300
LEU
350
A
HIS
351
n
301
HIS
351
A
GLN
352
n
302
GLN
352
A
GLN
353
n
303
GLN
353
A
THR
354
n
304
THR
354
A
PRO
355
n
305
PRO
355
A
PRO
356
n
306
PRO
356
A
LYS
357
n
307
LYS
357
A
LEU
358
n
308
LEU
358
A
THR
359
n
309
THR
359
A
software_defined_assembly
PISA
2
dimeric
7690
-211.9
24410
A
SEP
241
PHOSPHOSERINE
A
SEP
191
SER
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
5_555
x-y,-y,-z+1/3
crystal symmetry operation
0.0000000000
0.0000000000
15.7496666667
A
N
LEU
88
A
N
LEU
38
A
O
VAL
96
A
O
VAL
46
A
N
ALA
99
A
N
ALA
49
A
O
TYR
108
A
O
TYR
58
A
N
LEU
113
A
N
LEU
63
A
O
LEU
155
A
O
LEU
105
A
O
GLY
158
A
O
GLY
108
A
N
TYR
146
A
N
TYR
96
A
O
GLY
165
A
O
GLY
115
A
N
LEU
213
A
N
LEU
163
A
N
LEU
212
A
N
LEU
162
A
O
GLN
220
A
O
GLN
170
A
N
ILE
202
A
N
ILE
152
A
O
LYS
228
A
O
LYS
178
1
A
MET
51
A
MET
1
1
Y
1
A
ASP
52
A
ASP
2
1
Y
1
A
GLY
53
A
GLY
3
1
Y
1
A
THR
54
A
THR
4
1
Y
1
A
ALA
55
A
ALA
5
1
Y
1
A
ALA
56
A
ALA
6
1
Y
1
A
GLU
57
A
GLU
7
1
Y
1
A
PRO
58
A
PRO
8
1
Y
1
A
ARG
59
A
ARG
9
1
Y
1
A
PRO
60
A
PRO
10
1
Y
1
A
GLY
61
A
GLY
11
1
Y
1
A
ALA
62
A
ALA
12
1
Y
1
A
GLY
63
A
GLY
13
1
Y
1
A
SER
64
A
SER
14
1
Y
1
A
LEU
65
A
LEU
15
1
Y
1
A
GLN
66
A
GLN
16
1
Y
1
A
HIS
67
A
HIS
17
1
Y
1
A
ALA
68
A
ALA
18
1
Y
1
A
GLN
69
A
GLN
19
1
Y
1
A
PRO
70
A
PRO
20
1
Y
1
A
PRO
71
A
PRO
21
1
Y
1
A
PRO
72
A
PRO
22
1
Y
1
A
PRO
232
A
PRO
182
1
Y
1
A
GLU
233
A
GLU
183
1
Y
1
A
SER
234
A
SER
184
1
Y
1
A
LYS
235
A
LYS
185
1
Y
1
A
GLN
236
A
GLN
186
1
Y
1
A
ALA
237
A
ALA
187
1
Y
1
A
ARG
238
A
ARG
188
1
Y
1
A
ALA
239
A
ALA
189
1
Y
1
A
A
NH1
O
ARG
HOH
183
2064
2.08
1
A
A
S
O3
SO4
SO4
1373
1373
1.01
1_555
5_555
1
A
A
O2
O3
SO4
SO4
1373
1373
1.23
1_555
5_555
1
A
A
O1
O4
SO4
SO4
1373
1373
1.41
1_555
5_555
1
A
A
O1
O3
SO4
SO4
1373
1373
1.56
1_555
5_555
1
A
A
S
O1
SO4
SO4
1373
1373
1.64
1_555
5_555
1
A
A
O3
O4
SO4
SO4
1373
1373
1.68
1_555
5_555
1
A
A
S
O2
SO4
SO4
1373
1373
1.75
1_555
5_555
1
A
A
O2
O2
SO4
SO4
1373
1373
1.77
1_555
5_555
1
A
A
S
O4
SO4
SO4
1373
1373
1.78
1_555
5_555
1
A
A
OE2
OE2
GLU
GLU
303
303
2.02
1_555
6_554
1
A
ASP
151
-114.05
-164.82
1
A
ARG
204
78.53
-7.84
1
A
ASP
205
-142.48
47.18
1
A
ASP
223
73.14
77.15
1
A
SEP
241
91.31
-65.68
1
A
ASN
349
-146.64
44.20
26.771
1.05
0.53
0.00
1.05
0.00
-1.58
0.950
0.933
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
0.22567
0.18878
0.19061
2.00
30.00
1398
26472
5.0
99.71
3.104
0.090
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.151
0.142
0.80
0.80
1.40
PDB ENTRY 1H1W
MAXIMUM LIKELIHOOD
MASK
2.00
30.00
150
2531
96
0
2285
0.014
0.022
2428
1.468
2.016
3271
5.738
5.000
277
32.454
23.670
109
14.222
15.035
430
21.134
15.000
14
0.101
0.200
343
0.006
0.020
1778
0.206
0.200
1116
0.314
0.200
1627
0.169
0.200
160
0.500
0.200
63
0.220
0.200
20
1.154
1.500
1441
1.870
2.000
2254
2.672
3.000
1122
4.044
4.500
1017
0.282
0.217
2.052
100
1962
20
99.71
2.00
30.00
2XCH
27886
0.0
0.08
1
9.80
4.500
99.7
0.39
2.00
2.10
1
4.00
99.4
refinement
REFMAC
5.2.0019
data reduction
DENZO
data scaling
SCALEPACK
Crystal structure of PDK1 in complex with a pyrazoloquinazoline inhibitor
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
5
N
N
A
ARG
78
A
ARG
28
HELX_P
A
GLU
80
A
GLU
30
5
1
3
A
LYS
115
A
LYS
65
HELX_P
A
GLU
121
A
GLU
71
1
2
7
A
LYS
123
A
LYS
73
HELX_P
A
LEU
137
A
LEU
87
1
3
15
A
LEU
167
A
LEU
117
HELX_P
A
GLY
175
A
GLY
125
1
4
9
A
ASP
178
A
ASP
128
HELX_P
A
LYS
199
A
LYS
149
1
5
22
A
THR
245
A
THR
195
HELX_P
A
VAL
249
A
VAL
199
5
6
5
A
SER
250
A
SER
200
HELX_P
A
GLU
256
A
GLU
206
1
7
7
A
CYS
260
A
CYS
210
HELX_P
A
GLY
278
A
GLY
228
1
8
19
A
ASN
286
A
ASN
236
HELX_P
A
LYS
296
A
LYS
246
1
9
11
A
PHE
306
A
PHE
256
HELX_P
A
LEU
317
A
LEU
267
1
10
12
A
ASP
320
A
ASP
270
HELX_P
A
ARG
324
A
ARG
274
5
11
5
A
CYS
327
A
CYS
277
HELX_P
A
GLU
331
A
GLU
281
5
12
5
A
GLY
332
A
GLY
282
HELX_P
A
ALA
338
A
ALA
288
1
13
7
A
HIS
339
A
HIS
289
HELX_P
A
GLU
343
A
GLU
293
5
14
5
A
THR
346
A
THR
296
HELX_P
A
GLN
353
A
GLN
303
5
15
8
covale
1.334
both
A
ASN
240
A
C
ASN
190
1_555
A
SEP
241
A
N
SEP
191
1_555
covale
1.332
both
A
SEP
241
A
C
SEP
191
1_555
A
PHE
242
A
N
PHE
192
1_555
TRANSFERASE
PI3-KINASE SIGNALLING, TRANSFERASE, SERINE/THREONINE-PROTEIN KINASE, ATP-BINDING
PDPK1_HUMAN
UNP
1
O15530
1
309
2XCH
51
359
O15530
A
1
1
309
5
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
PHE
82
A
PHE
32
A
GLU
90
A
GLU
40
A
THR
95
A
THR
45
A
GLU
101
A
GLU
51
A
GLU
107
A
GLU
57
A
GLU
114
A
GLU
64
A
LYS
154
A
LYS
104
A
LEU
159
A
LEU
109
A
LEU
145
A
LEU
95
A
GLN
150
A
GLN
100
A
GLY
165
A
GLY
115
A
GLU
166
A
GLU
116
A
ILE
211
A
ILE
161
A
LEU
213
A
LEU
163
A
ILE
219
A
ILE
169
A
ILE
221
A
ILE
171
A
ILE
201
A
ILE
151
A
ILE
202
A
ILE
152
A
LYS
228
A
LYS
178
A
VAL
229
A
VAL
179
BINDING SITE FOR RESIDUE GOL A 1361
A
GOL
1361
Software
9
BINDING SITE FOR RESIDUE GOL A 1362
A
GOL
1362
Software
7
BINDING SITE FOR RESIDUE GOL A 1363
A
GOL
1363
Software
9
BINDING SITE FOR RESIDUE GOL A 1365
A
GOL
1365
Software
6
BINDING SITE FOR RESIDUE GOL A 1366
A
GOL
1366
Software
6
BINDING SITE FOR RESIDUE GOL A 1367
A
GOL
1367
Software
5
BINDING SITE FOR RESIDUE SO4 A 1368
A
SO4
1368
Software
7
BINDING SITE FOR RESIDUE SO4 A 1369
A
SO4
1369
Software
6
BINDING SITE FOR RESIDUE SO4 A 1370
A
SO4
1370
Software
5
BINDING SITE FOR RESIDUE SO4 A 1371
A
SO4
1371
Software
4
BINDING SITE FOR RESIDUE SO4 A 1372
A
SO4
1372
Software
3
BINDING SITE FOR RESIDUE SO4 A 1373
A
SO4
1373
Software
6
BINDING SITE FOR RESIDUE CKG A 1360
A
CKG
1360
Software
15
A
ALA
103
A
ALA
53
9
1_555
A
THR
104
A
THR
54
9
1_555
A
HIS
139
A
HIS
89
9
5_555
A
SER
191
A
SER
141
9
5_555
A
TRP
347
A
TRP
297
9
5_555
A
GLU
348
A
GLU
298
9
5_555
A
ASN
349
A
ASN
299
9
5_555
A
LEU
350
A
LEU
300
9
5_555
A
HIS
351
A
HIS
301
9
5_555
A
PHE
82
A
PHE
32
7
1_555
A
LYS
83
A
LYS
33
7
1_555
A
PHE
84
A
PHE
34
7
1_555
A
GLU
194
A
GLU
144
7
1_556
A
GLY
334
A
GLY
284
7
1_556
A
LYS
337
A
LYS
287
7
1_556
A
HOH
2146
O
HOH
7
1_555
A
ARG
106
A
ARG
56
9
1_555
A
GLU
107
A
GLU
57
9
1_555
A
TYR
146
A
TYR
96
9
1_555
A
SER
160
A
SER
110
9
1_555
A
TYR
161
A
TYR
111
9
1_555
A
GOL
1365
F
GOL
9
5_555
A
SO4
1369
J
SO4
9
1_555
A
SO4
1370
K
SO4
9
1_555
A
HOH
2048
O
HOH
9
1_555
A
ARG
106
A
ARG
56
6
5_555
A
GLU
107
A
GLU
57
6
5_555
A
HIS
351
A
HIS
301
6
1_555
A
GLN
352
A
GLN
302
6
1_555
A
GOL
1363
E
GOL
6
5_555
A
SO4
1370
K
SO4
6
5_555
A
SER
92
A
SER
42
6
1_555
A
SER
94
A
SER
44
6
1_555
A
LYS
111
A
LYS
61
6
1_555
A
ASP
223
A
ASP
173
6
1_555
A
CKG
1360
B
CKG
6
1_555
A
HOH
2147
O
HOH
6
1_555
A
LEU
297
A
LEU
247
5
1_555
A
TYR
299
A
TYR
249
5
1_555
A
PHE
301
A
PHE
251
5
1_555
A
ARG
310
A
ARG
260
5
1_555
A
HOH
2148
O
HOH
5
1_555
A
LYS
76
A
LYS
26
7
1_555
A
ARG
131
A
ARG
81
7
1_555
A
THR
148
A
THR
98
7
1_555
A
PHE
149
A
PHE
99
7
1_555
A
GLN
150
A
GLN
100
7
1_555
A
HOH
2030
O
HOH
7
1_555
A
HOH
2149
O
HOH
7
1_555
A
TYR
146
A
TYR
96
6
1_555
A
SER
160
A
SER
110
6
1_555
A
GLN
220
A
GLN
170
6
1_555
A
GOL
1363
E
GOL
6
1_555
A
SO4
1373
N
SO4
6
1_555
A
HOH
2150
O
HOH
6
1_555
A
ARG
106
A
ARG
56
5
1_555
A
HIS
351
A
HIS
301
5
5_555
A
GOL
1363
E
GOL
5
1_555
A
GOL
1365
F
GOL
5
5_555
A
SO4
1373
N
SO4
5
5_555
A
VAL
345
A
VAL
295
4
1_555
A
THR
346
A
THR
296
4
1_555
A
TRP
347
A
TRP
297
4
1_555
A
GLU
348
A
GLU
298
4
1_555
A
ARG
75
A
ARG
25
3
1_555
A
ARG
136
A
ARG
86
3
5_555
A
LYS
199
A
LYS
149
3
5_555
A
LYS
144
A
LYS
94
6
5_555
A
LYS
144
A
LYS
94
6
1_555
A
TYR
146
A
TYR
96
6
5_555
A
TYR
146
A
TYR
96
6
1_555
A
SO4
1369
J
SO4
6
1_555
A
SO4
1370
K
SO4
6
5_555
A
LEU
88
A
LEU
38
15
1_555
A
VAL
96
A
VAL
46
15
1_555
A
ALA
109
A
ALA
59
15
1_555
A
LYS
111
A
LYS
61
15
1_555
A
LEU
159
A
LEU
109
15
1_555
A
SER
160
A
SER
110
15
1_555
A
TYR
161
A
TYR
111
15
1_555
A
ALA
162
A
ALA
112
15
1_555
A
GLY
165
A
GLY
115
15
1_555
A
GLU
166
A
GLU
116
15
1_555
A
GLU
209
A
GLU
159
15
1_555
A
LEU
212
A
LEU
162
15
1_555
A
GOL
1366
G
GOL
15
1_555
A
HOH
2082
O
HOH
15
1_555
A
HOH
2145
O
HOH
15
1_555
154
P 32 2 1