0.011302
0.006525
0.000000
0.000000
0.013050
0.000000
0.000000
0.000000
0.005197
0.00000
0.00000
0.00000
Waldron, K.J.
Firbank, S.J.
Dainty, S.J.
Perez-Rama, M.
Tottey, S.
Robinson, N.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
88.483
88.483
192.419
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
Cu 2
63.546
COPPER (II) ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C H4 N2 O
60.055
UREA
non-polymer
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CL
N
75
N
CU
N
76
N
N
N
77
R
C
N
78
N
C
N
79
N
O
N
80
N
C
N
81
N
S
N
82
N
O
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
N
N
91
S
C
N
92
N
C
N
93
N
O
N
94
N
C
N
95
N
C
N
96
N
C
N
97
N
O
N
98
N
N
N
99
N
O
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
N
N
111
S
C
N
112
N
C
N
113
N
O
N
114
N
C
N
115
N
C
N
116
N
C
N
117
N
O
N
118
N
O
N
119
N
O
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
N
N
130
N
C
N
131
N
C
N
132
N
O
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
N
N
140
S
C
N
141
N
C
N
142
N
O
N
143
N
C
Y
144
N
C
Y
145
N
N
Y
146
N
C
Y
147
N
C
Y
148
N
N
N
149
N
O
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
O
N
161
N
H
N
162
N
H
N
163
N
N
N
164
S
C
N
165
N
C
N
166
N
O
N
167
S
C
N
168
N
C
N
169
N
C
N
170
N
C
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
C
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
N
N
208
S
C
N
209
N
C
N
210
N
O
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
C
N
215
N
N
N
216
N
O
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
N
O
N
237
N
C
N
238
N
C
N
239
N
SE
N
240
N
C
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
Y
262
N
C
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
N
N
276
S
C
N
277
N
C
N
278
N
O
N
279
N
C
N
280
N
C
N
281
N
C
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
N
N
293
S
C
N
294
N
C
N
295
N
O
N
296
N
C
N
297
N
O
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
N
N
307
S
C
N
308
N
C
N
309
N
O
N
310
R
C
N
311
N
O
N
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
N
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
N
361
N
O
N
362
N
O
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
C
N
375
N
O
N
376
N
N
N
377
N
N
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
N
N
383
S
C
N
384
N
C
N
385
N
O
N
386
N
C
N
387
N
C
N
388
N
C
N
389
N
O
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
285
32504
10.1074/JBC.M110.153080
20702411
Structure and Metal Loading of a Soluble Periplasm Cuproprotein.
2010
10.2210/pdb2xl7/pdb
pdb_00002xl7
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
ADSC QUANTUM 210
SINGLE WAVELENGTH
M
x-ray
1
0.979
1.0
ID14-4
ESRF
0.979
SYNCHROTRON
ESRF BEAMLINE ID14-4
27305.408
SLL1785 PROTEIN
1
man
polymer
63.546
COPPER (II) ION
2
syn
non-polymer
60.055
UREA
1
syn
non-polymer
35.453
CHLORIDE ION
1
syn
non-polymer
18.015
water
197
nat
water
CUCA
no
yes
(MSE)AETEIHTFDDIP(MSE)PKLADPLLIYTPANEIFDIASCSAKDIGFAIAHAQIPPGGGP(MSE)PHIHYFINEWF
WTPEGGIELFHSTKQYPN(MSE)DELPVVGGAGRGDLYSIQSEPKQLIYSPNHY(MSE)HGFVNPTDKTLPIVFVW
(MSE)RNEVAPDFPYHDGG(MSE)REYFQAVGPRITDLNNLPELTNAQRAAFASEAPKYGINQSSYF(MSE)EYVNTISD
KLPAQIAKLKNDKDLER(MSE)VEVIEAFNRGDKSVTCS
MAETEIHTFDDIPMPKLADPLLIYTPANEIFDIASCSAKDIGFAIAHAQIPPGGGPMPHIHYFINEWFWTPEGGIELFHS
TKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPNHYMHGFVNPTDKTLPIVFVWMRNEVAPDFPYHDGGMREYFQAVG
PRITDLNNLPELTNAQRAAFASEAPKYGINQSSYFMEYVNTISDKLPAQIAKLKNDKDLERMVEVIEAFNRGDKSVTCS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
27184
1148
SYNECHOCYSTIS SP. PCC 6803
562
ESCHERICHIA COLI
B834(DE3)
PET29A
1
3.87
68
NONE
7.5
0.1 M HEPES PH 7.5, 20% (W/V) PEG 8000, 0.5MM CUSO4
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2010-08-11
1
1
2011-05-12
1
2
2011-07-13
1
3
2023-12-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
STRUCTURE AND METAL-LOADING OF A SOLUBLE PERIPLASM CUPRO-PROTEIN: CU-CUCA-OPEN
STRUCTURE AND METAL-LOADING OF A SOLUBLE PERIPLASM CUPRO-PROTEIN: APO-CUCA-CLOSED (SEMET)
STRUCTURE AND METAL-LOADING OF A SOLUBLE PERIPLASM CUPRO-PROTEIN: ZN-CUCA-CLOSED (SEMET)
STRUCTURE AND METAL-LOADING OF A SOLUBLE PERIPLASM CUPRO-PROTEIN: CU-CUCA-CLOSED
PDBE
Y
PDBE
2010-07-19
REL
REL
CU
COPPER (II) ION
URE
UREA
CL
CHLORIDE ION
HOH
water
2XL9
PDB ENTRY 2XL9
PDB
experimental model
CU
1269
2
CU
CU
1269
A
CU
1270
2
CU
CU
1270
A
URE
1271
3
URE
URE
1271
A
CL
1272
4
CL
CL
1272
A
HOH
2001
5
HOH
HOH
2001
A
HOH
2002
5
HOH
HOH
2002
A
HOH
2003
5
HOH
HOH
2003
A
HOH
2004
5
HOH
HOH
2004
A
HOH
2005
5
HOH
HOH
2005
A
HOH
2006
5
HOH
HOH
2006
A
HOH
2007
5
HOH
HOH
2007
A
HOH
2008
5
HOH
HOH
2008
A
HOH
2009
5
HOH
HOH
2009
A
HOH
2010
5
HOH
HOH
2010
A
HOH
2011
5
HOH
HOH
2011
A
HOH
2012
5
HOH
HOH
2012
A
HOH
2013
5
HOH
HOH
2013
A
HOH
2014
5
HOH
HOH
2014
A
HOH
2015
5
HOH
HOH
2015
A
HOH
2016
5
HOH
HOH
2016
A
HOH
2017
5
HOH
HOH
2017
A
HOH
2018
5
HOH
HOH
2018
A
HOH
2019
5
HOH
HOH
2019
A
HOH
2020
5
HOH
HOH
2020
A
HOH
2021
5
HOH
HOH
2021
A
HOH
2022
5
HOH
HOH
2022
A
HOH
2023
5
HOH
HOH
2023
A
HOH
2024
5
HOH
HOH
2024
A
HOH
2025
5
HOH
HOH
2025
A
HOH
2026
5
HOH
HOH
2026
A
HOH
2027
5
HOH
HOH
2027
A
HOH
2028
5
HOH
HOH
2028
A
HOH
2029
5
HOH
HOH
2029
A
HOH
2030
5
HOH
HOH
2030
A
HOH
2031
5
HOH
HOH
2031
A
HOH
2032
5
HOH
HOH
2032
A
HOH
2033
5
HOH
HOH
2033
A
HOH
2034
5
HOH
HOH
2034
A
HOH
2035
5
HOH
HOH
2035
A
HOH
2036
5
HOH
HOH
2036
A
HOH
2037
5
HOH
HOH
2037
A
HOH
2038
5
HOH
HOH
2038
A
HOH
2039
5
HOH
HOH
2039
A
HOH
2040
5
HOH
HOH
2040
A
HOH
2041
5
HOH
HOH
2041
A
HOH
2042
5
HOH
HOH
2042
A
HOH
2043
5
HOH
HOH
2043
A
HOH
2044
5
HOH
HOH
2044
A
HOH
2045
5
HOH
HOH
2045
A
HOH
2046
5
HOH
HOH
2046
A
HOH
2047
5
HOH
HOH
2047
A
HOH
2048
5
HOH
HOH
2048
A
HOH
2049
5
HOH
HOH
2049
A
HOH
2050
5
HOH
HOH
2050
A
HOH
2051
5
HOH
HOH
2051
A
HOH
2052
5
HOH
HOH
2052
A
HOH
2053
5
HOH
HOH
2053
A
HOH
2054
5
HOH
HOH
2054
A
HOH
2055
5
HOH
HOH
2055
A
HOH
2056
5
HOH
HOH
2056
A
HOH
2057
5
HOH
HOH
2057
A
HOH
2058
5
HOH
HOH
2058
A
HOH
2059
5
HOH
HOH
2059
A
HOH
2060
5
HOH
HOH
2060
A
HOH
2061
5
HOH
HOH
2061
A
HOH
2062
5
HOH
HOH
2062
A
HOH
2063
5
HOH
HOH
2063
A
HOH
2064
5
HOH
HOH
2064
A
HOH
2065
5
HOH
HOH
2065
A
HOH
2066
5
HOH
HOH
2066
A
HOH
2067
5
HOH
HOH
2067
A
HOH
2068
5
HOH
HOH
2068
A
HOH
2069
5
HOH
HOH
2069
A
HOH
2070
5
HOH
HOH
2070
A
HOH
2071
5
HOH
HOH
2071
A
HOH
2072
5
HOH
HOH
2072
A
HOH
2073
5
HOH
HOH
2073
A
HOH
2074
5
HOH
HOH
2074
A
HOH
2075
5
HOH
HOH
2075
A
HOH
2076
5
HOH
HOH
2076
A
HOH
2077
5
HOH
HOH
2077
A
HOH
2078
5
HOH
HOH
2078
A
HOH
2079
5
HOH
HOH
2079
A
HOH
2080
5
HOH
HOH
2080
A
HOH
2081
5
HOH
HOH
2081
A
HOH
2082
5
HOH
HOH
2082
A
HOH
2083
5
HOH
HOH
2083
A
HOH
2084
5
HOH
HOH
2084
A
HOH
2085
5
HOH
HOH
2085
A
HOH
2086
5
HOH
HOH
2086
A
HOH
2087
5
HOH
HOH
2087
A
HOH
2088
5
HOH
HOH
2088
A
HOH
2089
5
HOH
HOH
2089
A
HOH
2090
5
HOH
HOH
2090
A
HOH
2091
5
HOH
HOH
2091
A
HOH
2092
5
HOH
HOH
2092
A
HOH
2093
5
HOH
HOH
2093
A
HOH
2094
5
HOH
HOH
2094
A
HOH
2095
5
HOH
HOH
2095
A
HOH
2096
5
HOH
HOH
2096
A
HOH
2097
5
HOH
HOH
2097
A
HOH
2098
5
HOH
HOH
2098
A
HOH
2099
5
HOH
HOH
2099
A
HOH
2100
5
HOH
HOH
2100
A
HOH
2101
5
HOH
HOH
2101
A
HOH
2102
5
HOH
HOH
2102
A
HOH
2103
5
HOH
HOH
2103
A
HOH
2104
5
HOH
HOH
2104
A
HOH
2105
5
HOH
HOH
2105
A
HOH
2106
5
HOH
HOH
2106
A
HOH
2107
5
HOH
HOH
2107
A
HOH
2108
5
HOH
HOH
2108
A
HOH
2109
5
HOH
HOH
2109
A
HOH
2110
5
HOH
HOH
2110
A
HOH
2111
5
HOH
HOH
2111
A
HOH
2112
5
HOH
HOH
2112
A
HOH
2113
5
HOH
HOH
2113
A
HOH
2114
5
HOH
HOH
2114
A
HOH
2115
5
HOH
HOH
2115
A
HOH
2116
5
HOH
HOH
2116
A
HOH
2117
5
HOH
HOH
2117
A
HOH
2118
5
HOH
HOH
2118
A
HOH
2119
5
HOH
HOH
2119
A
HOH
2120
5
HOH
HOH
2120
A
HOH
2121
5
HOH
HOH
2121
A
HOH
2122
5
HOH
HOH
2122
A
HOH
2123
5
HOH
HOH
2123
A
HOH
2124
5
HOH
HOH
2124
A
HOH
2125
5
HOH
HOH
2125
A
HOH
2126
5
HOH
HOH
2126
A
HOH
2127
5
HOH
HOH
2127
A
HOH
2128
5
HOH
HOH
2128
A
HOH
2129
5
HOH
HOH
2129
A
HOH
2130
5
HOH
HOH
2130
A
HOH
2131
5
HOH
HOH
2131
A
HOH
2132
5
HOH
HOH
2132
A
HOH
2133
5
HOH
HOH
2133
A
HOH
2134
5
HOH
HOH
2134
A
HOH
2135
5
HOH
HOH
2135
A
HOH
2136
5
HOH
HOH
2136
A
HOH
2137
5
HOH
HOH
2137
A
HOH
2138
5
HOH
HOH
2138
A
HOH
2139
5
HOH
HOH
2139
A
HOH
2140
5
HOH
HOH
2140
A
HOH
2141
5
HOH
HOH
2141
A
HOH
2142
5
HOH
HOH
2142
A
HOH
2143
5
HOH
HOH
2143
A
HOH
2144
5
HOH
HOH
2144
A
HOH
2145
5
HOH
HOH
2145
A
HOH
2146
5
HOH
HOH
2146
A
HOH
2147
5
HOH
HOH
2147
A
HOH
2148
5
HOH
HOH
2148
A
HOH
2149
5
HOH
HOH
2149
A
HOH
2150
5
HOH
HOH
2150
A
HOH
2151
5
HOH
HOH
2151
A
HOH
2152
5
HOH
HOH
2152
A
HOH
2153
5
HOH
HOH
2153
A
HOH
2154
5
HOH
HOH
2154
A
HOH
2155
5
HOH
HOH
2155
A
HOH
2156
5
HOH
HOH
2156
A
HOH
2157
5
HOH
HOH
2157
A
HOH
2158
5
HOH
HOH
2158
A
HOH
2159
5
HOH
HOH
2159
A
HOH
2160
5
HOH
HOH
2160
A
HOH
2161
5
HOH
HOH
2161
A
HOH
2162
5
HOH
HOH
2162
A
HOH
2163
5
HOH
HOH
2163
A
HOH
2164
5
HOH
HOH
2164
A
HOH
2165
5
HOH
HOH
2165
A
HOH
2166
5
HOH
HOH
2166
A
HOH
2167
5
HOH
HOH
2167
A
HOH
2168
5
HOH
HOH
2168
A
HOH
2169
5
HOH
HOH
2169
A
HOH
2170
5
HOH
HOH
2170
A
HOH
2171
5
HOH
HOH
2171
A
HOH
2172
5
HOH
HOH
2172
A
HOH
2173
5
HOH
HOH
2173
A
HOH
2174
5
HOH
HOH
2174
A
HOH
2175
5
HOH
HOH
2175
A
HOH
2176
5
HOH
HOH
2176
A
HOH
2177
5
HOH
HOH
2177
A
HOH
2178
5
HOH
HOH
2178
A
HOH
2179
5
HOH
HOH
2179
A
HOH
2180
5
HOH
HOH
2180
A
HOH
2181
5
HOH
HOH
2181
A
HOH
2182
5
HOH
HOH
2182
A
HOH
2183
5
HOH
HOH
2183
A
HOH
2184
5
HOH
HOH
2184
A
HOH
2185
5
HOH
HOH
2185
A
HOH
2186
5
HOH
HOH
2186
A
HOH
2187
5
HOH
HOH
2187
A
HOH
2188
5
HOH
HOH
2188
A
HOH
2189
5
HOH
HOH
2189
A
HOH
2190
5
HOH
HOH
2190
A
HOH
2191
5
HOH
HOH
2191
A
HOH
2192
5
HOH
HOH
2192
A
HOH
2193
5
HOH
HOH
2193
A
HOH
2194
5
HOH
HOH
2194
A
HOH
2195
5
HOH
HOH
2195
A
HOH
2196
5
HOH
HOH
2196
A
HOH
2197
5
HOH
HOH
2197
A
n
1
30
A
n
2
31
A
n
3
32
A
n
4
33
A
GLU
34
n
5
GLU
34
A
ILE
35
n
6
ILE
35
A
HIS
36
n
7
HIS
36
A
THR
37
n
8
THR
37
A
PHE
38
n
9
PHE
38
A
ASP
39
n
10
ASP
39
A
ASP
40
n
11
ASP
40
A
ILE
41
n
12
ILE
41
A
PRO
42
n
13
PRO
42
A
MSE
43
n
14
MSE
43
A
PRO
44
n
15
PRO
44
A
LYS
45
n
16
LYS
45
A
LEU
46
n
17
LEU
46
A
ALA
47
n
18
ALA
47
A
ASP
48
n
19
ASP
48
A
PRO
49
n
20
PRO
49
A
LEU
50
n
21
LEU
50
A
LEU
51
n
22
LEU
51
A
ILE
52
n
23
ILE
52
A
TYR
53
n
24
TYR
53
A
THR
54
n
25
THR
54
A
PRO
55
n
26
PRO
55
A
ALA
56
n
27
ALA
56
A
ASN
57
n
28
ASN
57
A
GLU
58
n
29
GLU
58
A
ILE
59
n
30
ILE
59
A
PHE
60
n
31
PHE
60
A
ASP
61
n
32
ASP
61
A
ILE
62
n
33
ILE
62
A
ALA
63
n
34
ALA
63
A
SER
64
n
35
SER
64
A
CYS
65
n
36
CYS
65
A
SER
66
n
37
SER
66
A
ALA
67
n
38
ALA
67
A
LYS
68
n
39
LYS
68
A
ASP
69
n
40
ASP
69
A
ILE
70
n
41
ILE
70
A
GLY
71
n
42
GLY
71
A
PHE
72
n
43
PHE
72
A
ALA
73
n
44
ALA
73
A
ILE
74
n
45
ILE
74
A
ALA
75
n
46
ALA
75
A
HIS
76
n
47
HIS
76
A
ALA
77
n
48
ALA
77
A
GLN
78
n
49
GLN
78
A
ILE
79
n
50
ILE
79
A
PRO
80
n
51
PRO
80
A
PRO
81
n
52
PRO
81
A
GLY
82
n
53
GLY
82
A
GLY
83
n
54
GLY
83
A
GLY
84
n
55
GLY
84
A
PRO
85
n
56
PRO
85
A
MSE
86
n
57
MSE
86
A
PRO
87
n
58
PRO
87
A
HIS
88
n
59
HIS
88
A
ILE
89
n
60
ILE
89
A
HIS
90
n
61
HIS
90
A
TYR
91
n
62
TYR
91
A
PHE
92
n
63
PHE
92
A
ILE
93
n
64
ILE
93
A
ASN
94
n
65
ASN
94
A
GLU
95
n
66
GLU
95
A
TRP
96
n
67
TRP
96
A
PHE
97
n
68
PHE
97
A
TRP
98
n
69
TRP
98
A
THR
99
n
70
THR
99
A
PRO
100
n
71
PRO
100
A
GLU
101
n
72
GLU
101
A
GLY
102
n
73
GLY
102
A
GLY
103
n
74
GLY
103
A
ILE
104
n
75
ILE
104
A
GLU
105
n
76
GLU
105
A
LEU
106
n
77
LEU
106
A
PHE
107
n
78
PHE
107
A
HIS
108
n
79
HIS
108
A
SER
109
n
80
SER
109
A
THR
110
n
81
THR
110
A
LYS
111
n
82
LYS
111
A
GLN
112
n
83
GLN
112
A
TYR
113
n
84
TYR
113
A
PRO
114
n
85
PRO
114
A
ASN
115
n
86
ASN
115
A
MSE
116
n
87
MSE
116
A
ASP
117
n
88
ASP
117
A
GLU
118
n
89
GLU
118
A
LEU
119
n
90
LEU
119
A
PRO
120
n
91
PRO
120
A
VAL
121
n
92
VAL
121
A
VAL
122
n
93
VAL
122
A
GLY
123
n
94
GLY
123
A
GLY
124
n
95
GLY
124
A
ALA
125
n
96
ALA
125
A
GLY
126
n
97
GLY
126
A
ARG
127
n
98
ARG
127
A
GLY
128
n
99
GLY
128
A
ASP
129
n
100
ASP
129
A
LEU
130
n
101
LEU
130
A
TYR
131
n
102
TYR
131
A
SER
132
n
103
SER
132
A
ILE
133
n
104
ILE
133
A
GLN
134
n
105
GLN
134
A
SER
135
n
106
SER
135
A
GLU
136
n
107
GLU
136
A
PRO
137
n
108
PRO
137
A
LYS
138
n
109
LYS
138
A
GLN
139
n
110
GLN
139
A
LEU
140
n
111
LEU
140
A
ILE
141
n
112
ILE
141
A
TYR
142
n
113
TYR
142
A
SER
143
n
114
SER
143
A
PRO
144
n
115
PRO
144
A
ASN
145
n
116
ASN
145
A
HIS
146
n
117
HIS
146
A
TYR
147
n
118
TYR
147
A
MSE
148
n
119
MSE
148
A
HIS
149
n
120
HIS
149
A
GLY
150
n
121
GLY
150
A
PHE
151
n
122
PHE
151
A
VAL
152
n
123
VAL
152
A
ASN
153
n
124
ASN
153
A
PRO
154
n
125
PRO
154
A
THR
155
n
126
THR
155
A
ASP
156
n
127
ASP
156
A
LYS
157
n
128
LYS
157
A
THR
158
n
129
THR
158
A
LEU
159
n
130
LEU
159
A
PRO
160
n
131
PRO
160
A
ILE
161
n
132
ILE
161
A
VAL
162
n
133
VAL
162
A
PHE
163
n
134
PHE
163
A
VAL
164
n
135
VAL
164
A
TRP
165
n
136
TRP
165
A
MSE
166
n
137
MSE
166
A
ARG
167
n
138
ARG
167
A
ASN
168
n
139
ASN
168
A
GLU
169
n
140
GLU
169
A
VAL
170
n
141
VAL
170
A
ALA
171
n
142
ALA
171
A
PRO
172
n
143
PRO
172
A
ASP
173
n
144
ASP
173
A
PHE
174
n
145
PHE
174
A
PRO
175
n
146
PRO
175
A
TYR
176
n
147
TYR
176
A
HIS
177
n
148
HIS
177
A
ASP
178
n
149
ASP
178
A
GLY
179
n
150
GLY
179
A
GLY
180
n
151
GLY
180
A
MSE
181
n
152
MSE
181
A
ARG
182
n
153
ARG
182
A
GLU
183
n
154
GLU
183
A
TYR
184
n
155
TYR
184
A
PHE
185
n
156
PHE
185
A
GLN
186
n
157
GLN
186
A
ALA
187
n
158
ALA
187
A
VAL
188
n
159
VAL
188
A
GLY
189
n
160
GLY
189
A
PRO
190
n
161
PRO
190
A
ARG
191
n
162
ARG
191
A
ILE
192
n
163
ILE
192
A
THR
193
n
164
THR
193
A
ASP
194
n
165
ASP
194
A
LEU
195
n
166
LEU
195
A
ASN
196
n
167
ASN
196
A
ASN
197
n
168
ASN
197
A
LEU
198
n
169
LEU
198
A
PRO
199
n
170
PRO
199
A
GLU
200
n
171
GLU
200
A
LEU
201
n
172
LEU
201
A
THR
202
n
173
THR
202
A
ASN
203
n
174
ASN
203
A
ALA
204
n
175
ALA
204
A
GLN
205
n
176
GLN
205
A
ARG
206
n
177
ARG
206
A
ALA
207
n
178
ALA
207
A
ALA
208
n
179
ALA
208
A
PHE
209
n
180
PHE
209
A
ALA
210
n
181
ALA
210
A
SER
211
n
182
SER
211
A
GLU
212
n
183
GLU
212
A
ALA
213
n
184
ALA
213
A
PRO
214
n
185
PRO
214
A
LYS
215
n
186
LYS
215
A
TYR
216
n
187
TYR
216
A
GLY
217
n
188
GLY
217
A
ILE
218
n
189
ILE
218
A
ASN
219
n
190
ASN
219
A
GLN
220
n
191
GLN
220
A
SER
221
n
192
SER
221
A
SER
222
n
193
SER
222
A
TYR
223
n
194
TYR
223
A
PHE
224
n
195
PHE
224
A
MSE
225
n
196
MSE
225
A
GLU
226
n
197
GLU
226
A
TYR
227
n
198
TYR
227
A
VAL
228
n
199
VAL
228
A
ASN
229
n
200
ASN
229
A
THR
230
n
201
THR
230
A
ILE
231
n
202
ILE
231
A
SER
232
n
203
SER
232
A
ASP
233
n
204
ASP
233
A
LYS
234
n
205
LYS
234
A
LEU
235
n
206
LEU
235
A
PRO
236
n
207
PRO
236
A
ALA
237
n
208
ALA
237
A
GLN
238
n
209
GLN
238
A
ILE
239
n
210
ILE
239
A
ALA
240
n
211
ALA
240
A
LYS
241
n
212
LYS
241
A
LEU
242
n
213
LEU
242
A
LYS
243
n
214
LYS
243
A
ASN
244
n
215
ASN
244
A
ASP
245
n
216
ASP
245
A
LYS
246
n
217
LYS
246
A
ASP
247
n
218
ASP
247
A
LEU
248
n
219
LEU
248
A
GLU
249
n
220
GLU
249
A
ARG
250
n
221
ARG
250
A
MSE
251
n
222
MSE
251
A
VAL
252
n
223
VAL
252
A
GLU
253
n
224
GLU
253
A
VAL
254
n
225
VAL
254
A
ILE
255
n
226
ILE
255
A
GLU
256
n
227
GLU
256
A
ALA
257
n
228
ALA
257
A
PHE
258
n
229
PHE
258
A
ASN
259
n
230
ASN
259
A
ARG
260
n
231
ARG
260
A
GLY
261
n
232
GLY
261
A
ASP
262
n
233
ASP
262
A
LYS
263
n
234
LYS
263
A
SER
264
n
235
SER
264
A
VAL
265
n
236
VAL
265
A
THR
266
n
237
THR
266
A
CYS
267
n
238
CYS
267
A
SER
268
n
239
SER
268
A
0.1853
0.1225
-0.0429
0.2320
-0.0241
0.1523
0.0031
-0.0035
-0.0152
-0.0204
0.0044
-0.0148
0.0069
-0.0029
-0.0075
0.0041
-0.0014
-0.0002
0.0005
0.0004
0.0022
refined
15.6985
21.6162
11.5584
X-RAY DIFFRACTION
A
34
A
268
X-RAY DIFFRACTION
1
author_and_software_defined_assembly
PISA
2
dimeric
2960
-63.1
19100
A
HIS
36
A
ND1
HIS
7
1_555
A
CU
1270
C
CU
CU
1_555
A
ASP
39
A
OD2
ASP
10
11_555
93.4
A
HIS
36
A
ND1
HIS
7
1_555
A
CU
1270
C
CU
CU
1_555
A
HOH
2003
F
O
HOH
1_555
157.8
A
ASP
39
A
OD2
ASP
10
11_555
A
CU
1270
C
CU
CU
1_555
A
HOH
2003
F
O
HOH
1_555
108.8
A
HIS
36
A
ND1
HIS
7
1_555
A
CU
1270
C
CU
CU
1_555
A
HOH
2005
F
O
HOH
11_555
98.2
A
ASP
39
A
OD2
ASP
10
11_555
A
CU
1270
C
CU
CU
1_555
A
HOH
2005
F
O
HOH
11_555
79.0
A
HOH
2003
F
O
HOH
1_555
A
CU
1270
C
CU
CU
1_555
A
HOH
2005
F
O
HOH
11_555
88.0
A
HIS
88
A
NE2
HIS
59
1_555
A
CU
1269
B
CU
CU
1_555
A
HIS
90
A
NE2
HIS
61
1_555
95.6
A
HIS
88
A
NE2
HIS
59
1_555
A
CU
1269
B
CU
CU
1_555
A
GLU
95
A
OE1
GLU
66
1_555
172.4
A
HIS
90
A
NE2
HIS
61
1_555
A
CU
1269
B
CU
CU
1_555
A
GLU
95
A
OE1
GLU
66
1_555
88.7
A
HIS
88
A
NE2
HIS
59
1_555
A
CU
1269
B
CU
CU
1_555
A
HIS
149
A
NE2
HIS
120
1_555
94.4
A
HIS
90
A
NE2
HIS
61
1_555
A
CU
1269
B
CU
CU
1_555
A
HIS
149
A
NE2
HIS
120
1_555
102.3
A
GLU
95
A
OE1
GLU
66
1_555
A
CU
1269
B
CU
CU
1_555
A
HIS
149
A
NE2
HIS
120
1_555
78.6
A
MSE
43
SELENOMETHIONINE
A
MSE
14
MET
A
MSE
86
SELENOMETHIONINE
A
MSE
57
MET
A
MSE
116
SELENOMETHIONINE
A
MSE
87
MET
A
MSE
148
SELENOMETHIONINE
A
MSE
119
MET
A
MSE
166
SELENOMETHIONINE
A
MSE
137
MET
A
MSE
181
SELENOMETHIONINE
A
MSE
152
MET
A
MSE
225
SELENOMETHIONINE
A
MSE
196
MET
A
MSE
251
SELENOMETHIONINE
A
MSE
222
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
4_665
-x+1,-y+1,z
crystal symmetry operation
44.2415000000
76.6285258031
0.0000000000
A
N
THR
54
A
N
THR
25
A
O
GLU
58
A
O
GLU
29
A
N
SER
143
A
N
SER
114
A
O
GLU
95
A
O
GLU
66
A
N
TRP
98
A
N
TRP
69
A
O
VAL
162
A
O
VAL
133
A
N
ARG
167
A
N
ARG
138
A
O
GLY
71
A
O
GLY
42
A
N
GLN
78
A
N
GLN
49
A
O
ILE
59
A
O
ILE
30
A
N
SER
66
A
N
SER
37
A
O
THR
266
A
O
THR
237
A
N
SER
143
A
N
SER
114
A
O
GLU
95
A
O
GLU
66
A
N
TRP
98
A
N
TRP
69
A
O
VAL
162
A
O
VAL
133
A
N
ARG
167
A
N
ARG
138
A
O
GLY
71
A
O
GLY
42
A
N
GLN
78
A
N
GLN
49
A
O
ILE
59
A
O
ILE
30
A
N
ILE
62
A
N
ILE
33
A
O
LEU
50
A
O
LEU
21
A
N
THR
266
A
N
THR
237
A
O
SER
66
A
O
SER
37
A
N
ASN
219
A
N
ASN
190
A
O
ILE
89
A
O
ILE
60
A
N
HIS
90
A
N
HIS
61
A
O
TYR
147
A
O
TYR
118
A
N
VAL
152
A
N
VAL
123
A
O
GLU
105
A
O
GLU
76
A
N
HIS
108
A
N
HIS
79
A
O
TYR
131
A
O
TYR
102
A
O
GLY
128
A
O
GLY
99
A
N
ASN
229
A
N
ASN
200
1
A
HOH
2080
F
HOH
1
A
HOH
2188
F
HOH
1
A
CD
LYS
45
A
CD
LYS
16
1
Y
1
A
CE
LYS
45
A
CE
LYS
16
1
Y
1
A
NZ
LYS
45
A
NZ
LYS
16
1
Y
1
A
CG
ASP
48
A
CG
ASP
19
1
Y
1
A
OD1
ASP
48
A
OD1
ASP
19
1
Y
1
A
OD2
ASP
48
A
OD2
ASP
19
1
Y
1
A
CG
LYS
68
A
CG
LYS
39
1
Y
1
A
CD
LYS
68
A
CD
LYS
39
1
Y
1
A
CE
LYS
68
A
CE
LYS
39
1
Y
1
A
NZ
LYS
68
A
NZ
LYS
39
1
Y
1
A
CE
LYS
157
A
CE
LYS
128
1
Y
1
A
NZ
LYS
157
A
NZ
LYS
128
1
Y
1
A
CD
LYS
234
A
CD
LYS
205
1
Y
1
A
CE
LYS
234
A
CE
LYS
205
1
Y
1
A
NZ
LYS
234
A
NZ
LYS
205
1
Y
1
A
CE
LYS
243
A
CE
LYS
214
1
Y
1
A
NZ
LYS
243
A
NZ
LYS
214
1
Y
1
A
MSE
30
A
MSE
1
1
Y
1
A
ALA
31
A
ALA
2
1
Y
1
A
GLU
32
A
GLU
3
1
Y
1
A
THR
33
A
THR
4
1
Y
1
A
HIS
146
93.74
-14.35
1
A
ASN
244
-153.40
71.68
31.312
0.28
0.14
0.00
0.28
0.00
-0.42
0.943
0.921
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS.
0.21317
0.17417
0.17609
2.40
44.24
913
17157
5.1
99.30
9.986
0.110
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.205
0.181
0.80
0.80
1.20
PDB ENTRY 2XL9
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
2.40
44.24
197
2052
7
0
1848
0.012
0.022
1916
1.298
1.952
2616
6.229
5.000
236
32.558
24.674
92
12.567
15.000
287
22.080
15.000
7
0.086
0.200
274
0.006
0.022
1524
0.566
1.500
1186
1.117
2.000
1922
1.872
3.000
730
3.099
4.500
693
0.238
0.192
2.462
68
1247
20
100.00
32
2.40
60.00
2XL7
18072
0.0
0.10
1
13.60
6
99.7
0.34
2.40
2.53
4.90
1
6.1
100.0
refinement
REFMAC
5.5.0070
data reduction
MOSFLM
data scaling
SCALA
phasing
MOLREP
Structure and metal-loading of a soluble periplasm cupro-protein: Cu- CucA-closed (SeMet)
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
5
N
N
A
GLY
180
A
GLY
151
HELX_P
A
GLY
189
A
GLY
160
1
1
10
A
THR
202
A
THR
173
HELX_P
A
GLU
212
A
GLU
183
1
2
11
A
ALA
213
A
ALA
184
HELX_P
A
TYR
216
A
TYR
187
5
3
4
A
TYR
223
A
TYR
194
HELX_P
A
GLU
226
A
GLU
197
5
4
4
A
PRO
236
A
PRO
207
HELX_P
A
LYS
241
A
LYS
212
1
5
6
A
ASN
244
A
ASN
215
HELX_P
A
ARG
260
A
ARG
231
1
6
17
disulf
2.047
A
CYS
65
A
SG
CYS
36
1_555
A
CYS
267
A
SG
CYS
238
1_555
covale
1.327
both
A
PRO
42
A
C
PRO
13
1_555
A
MSE
43
A
N
MSE
14
1_555
covale
1.354
both
A
MSE
43
A
C
MSE
14
1_555
A
PRO
44
A
N
PRO
15
1_555
covale
1.340
both
A
PRO
85
A
C
PRO
56
1_555
A
MSE
86
A
N
MSE
57
1_555
covale
1.349
both
A
MSE
86
A
C
MSE
57
1_555
A
PRO
87
A
N
PRO
58
1_555
covale
1.339
both
A
ASN
115
A
C
ASN
86
1_555
A
MSE
116
A
N
MSE
87
1_555
covale
1.332
both
A
MSE
116
A
C
MSE
87
1_555
A
ASP
117
A
N
ASP
88
1_555
covale
1.331
both
A
TYR
147
A
C
TYR
118
1_555
A
MSE
148
A
N
MSE
119
1_555
covale
1.325
both
A
MSE
148
A
C
MSE
119
1_555
A
HIS
149
A
N
HIS
120
1_555
covale
1.329
both
A
TRP
165
A
C
TRP
136
1_555
A
MSE
166
A
N
MSE
137
1_555
covale
1.329
both
A
MSE
166
A
C
MSE
137
1_555
A
ARG
167
A
N
ARG
138
1_555
covale
1.333
both
A
GLY
180
A
C
GLY
151
1_555
A
MSE
181
A
N
MSE
152
1_555
covale
1.337
both
A
MSE
181
A
C
MSE
152
1_555
A
ARG
182
A
N
ARG
153
1_555
covale
1.332
both
A
PHE
224
A
C
PHE
195
1_555
A
MSE
225
A
N
MSE
196
1_555
covale
1.330
both
A
MSE
225
A
C
MSE
196
1_555
A
GLU
226
A
N
GLU
197
1_555
covale
1.329
both
A
ARG
250
A
C
ARG
221
1_555
A
MSE
251
A
N
MSE
222
1_555
covale
1.338
both
A
MSE
251
A
C
MSE
222
1_555
A
VAL
252
A
N
VAL
223
1_555
metalc
1.874
A
HIS
36
A
ND1
HIS
7
1_555
A
CU
1270
C
CU
CU
1_555
metalc
2.154
A
ASP
39
A
OD2
ASP
10
11_555
A
CU
1270
C
CU
CU
1_555
metalc
2.007
A
HIS
88
A
NE2
HIS
59
1_555
A
CU
1269
B
CU
CU
1_555
metalc
2.086
A
HIS
90
A
NE2
HIS
61
1_555
A
CU
1269
B
CU
CU
1_555
metalc
2.023
A
GLU
95
A
OE1
GLU
66
1_555
A
CU
1269
B
CU
CU
1_555
metalc
2.240
A
HIS
149
A
NE2
HIS
120
1_555
A
CU
1269
B
CU
CU
1_555
metalc
2.638
A
CU
1270
C
CU
CU
1_555
A
HOH
2003
F
O
HOH
1_555
metalc
2.671
A
CU
1270
C
CU
CU
1_555
A
HOH
2005
F
O
HOH
11_555
METAL BINDING PROTEIN
METAL BINDING PROTEIN, CUPIN
P73600_SYNY3
UNP
1
P73600
31
268
2XL7
31
268
P73600
A
1
2
239
1
expression tag
MSE
30
2XL7
A
P73600
UNP
1
2
6
6
2
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
LEU
50
A
LEU
21
A
THR
54
A
THR
25
A
GLU
58
A
GLU
29
A
SER
66
A
SER
37
A
LEU
140
A
LEU
111
A
SER
143
A
SER
114
A
ILE
93
A
ILE
64
A
TRP
98
A
TRP
69
A
LEU
159
A
LEU
130
A
ARG
167
A
ARG
138
A
GLY
71
A
GLY
42
A
ILE
79
A
ILE
50
A
GLU
58
A
GLU
29
A
SER
66
A
SER
37
A
THR
266
A
THR
237
A
CYS
267
A
CYS
238
A
LEU
140
A
LEU
111
A
SER
143
A
SER
114
A
ILE
93
A
ILE
64
A
TRP
98
A
TRP
69
A
LEU
159
A
LEU
130
A
ARG
167
A
ARG
138
A
GLY
71
A
GLY
42
A
ILE
79
A
ILE
50
A
GLU
58
A
GLU
29
A
SER
66
A
SER
37
A
LEU
50
A
LEU
21
A
THR
54
A
THR
25
A
THR
266
A
THR
237
A
CYS
267
A
CYS
238
A
GLU
58
A
GLU
29
A
SER
66
A
SER
37
A
ILE
218
A
ILE
189
A
GLN
220
A
GLN
191
A
HIS
88
A
HIS
59
A
HIS
90
A
HIS
61
A
TYR
147
A
TYR
118
A
VAL
152
A
VAL
123
A
GLU
105
A
GLU
76
A
GLN
112
A
GLN
83
A
GLY
128
A
GLY
99
A
GLN
134
A
GLN
105
A
VAL
228
A
VAL
199
A
SER
232
A
SER
203
BINDING SITE FOR RESIDUE CU A 1269
A
CU
1269
Software
5
BINDING SITE FOR RESIDUE CU A 1270
A
CU
1270
Software
4
BINDING SITE FOR RESIDUE URE A 1271
A
URE
1271
Software
5
BINDING SITE FOR RESIDUE CL A 1272
A
CL
1272
Software
1
A
HIS
88
A
HIS
59
5
1_555
A
HIS
90
A
HIS
61
5
1_555
A
GLU
95
A
GLU
66
5
1_555
A
HIS
149
A
HIS
120
5
1_555
A
HOH
2047
F
HOH
5
1_555
A
HIS
36
A
HIS
7
4
1_555
A
ASP
39
A
ASP
10
4
11_555
A
HOH
2003
F
HOH
4
1_555
A
HOH
2005
F
HOH
4
11_555
A
GLU
58
A
GLU
29
5
1_555
A
PRO
85
A
PRO
56
5
1_555
A
PHE
185
A
PHE
156
5
1_555
A
PHE
209
A
PHE
180
5
1_555
A
HOH
2047
F
HOH
5
1_555
A
ARG
127
A
ARG
98
1
1_555
181
P 64 2 2