0.010696 0.000000 0.008670 0.000000 0.019227 0.000000 0.000000 0.000000 0.018653 0.00000 0.00000 0.00000 Jauch, R. Choo, S.H. Ng, C.K.L. Kolatkar, P.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 129.03 90.00 93.497 52.009 69.013 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N O N 89 N P N 90 N O N 91 N O N 92 N O N 93 N C N 94 R C N 95 N O N 96 S C N 97 N O N 98 N C N 99 R C Y 100 N N Y 101 N C Y 102 N N Y 103 N C Y 104 N C N 105 N N Y 106 N N Y 107 N C Y 108 N N Y 109 N C N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N O N 125 N P N 126 N O N 127 N O N 128 N O N 129 N C N 130 R C N 131 N O N 132 S C N 133 N O N 134 N C N 135 R C N 136 N N N 137 N C N 138 N O N 139 N N N 140 N C N 141 N N N 142 N C N 143 N C N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N P N 160 N O N 161 N O N 162 N O N 163 N C N 164 R C N 165 N O N 166 S C N 167 N O N 168 N C N 169 R C Y 170 N N Y 171 N C Y 172 N N Y 173 N C N 174 N C N 175 N O N 176 N N N 177 N C N 178 N N N 179 N N Y 180 N C N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N O N 196 N P N 197 N O N 198 N O N 199 N O N 200 N C N 201 R C N 202 N O N 203 S C N 204 N O N 205 N C N 206 R C N 207 N N N 208 N C N 209 N O N 210 N N N 211 N C N 212 N O N 213 N C N 214 N C N 215 N C N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N C N 232 N O N 233 N C N 234 N O N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N N N 242 S C N 243 N C N 244 N O N 245 N C N 246 N C N 247 N C N 248 N O N 249 N N N 250 N O N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N N N 262 S C N 263 N C N 264 N O N 265 N C N 266 N C N 267 N C N 268 N O N 269 N O N 270 N O N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N N N 281 N C N 282 N C N 283 N O N 284 N O N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C Y 295 N C Y 296 N N Y 297 N C Y 298 N C Y 299 N N N 300 N O N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N O N 312 N H N 313 N H N 314 N N N 315 S C N 316 N C N 317 N O N 318 S C N 319 N C N 320 N C N 321 N C N 322 N O N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N N N 337 S C N 338 N C N 339 N O N 340 N C N 341 N C N 342 N C N 343 N C N 344 N O N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N N N 359 S C N 360 N C N 361 N O N 362 N C N 363 N C N 364 N C N 365 N C N 366 N N N 367 N O N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N N N 384 S C N 385 N C N 386 N O N 387 N C N 388 N C N 389 N S N 390 N C N 391 N O N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N N N 404 S C N 405 N C N 406 N O N 407 N C Y 408 N C Y 409 N C Y 410 N C Y 411 N C Y 412 N C Y 413 N C N 414 N O N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N N N 427 S C N 428 N C N 429 N O N 430 N C N 431 N C N 432 N C N 433 N O N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N N N 444 S C N 445 N C N 446 N O N 447 N C N 448 N O N 449 N O N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N N N 458 S C N 459 N C N 460 N O N 461 R C N 462 N O N 463 N C N 464 N O N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N N N 475 S C N 476 N C N 477 N O N 478 N C Y 479 N C Y 480 N C Y 481 N C Y 482 N N Y 483 N C Y 484 N C Y 485 N C Y 486 N C Y 487 N C N 488 N O N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N N N 502 S C N 503 N C N 504 N O N 505 N C Y 506 N C Y 507 N C Y 508 N C Y 509 N C Y 510 N C Y 511 N C N 512 N O N 513 N O N 514 N H N 515 N H N 516 N H N 517 N H N 518 N H N 519 N H N 520 N H N 521 N H N 522 N H N 523 N H N 524 N H N 525 N N N 526 S C N 527 N C N 528 N O N 529 N C N 530 N C N 531 N C N 532 N O N 533 N H N 534 N H N 535 N H N 536 N H N 537 N H N 538 N H N 539 N H N 540 N H N 541 N H N 542 N H N 543 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing Y 106 N sing Y 107 N sing Y 108 N doub N 109 N sing Y 110 N sing Y 111 N sing Y 112 N doub N 113 N sing Y 114 N doub N 115 N sing N 116 N sing Y 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N sing Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N doub N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N doub N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N doub N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N doub N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N doub N 294 N sing N 295 N sing N 296 N sing N 297 N sing Y 298 N sing Y 299 N doub Y 300 N doub N 301 N sing Y 302 N sing N 303 N sing Y 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N doub N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N doub N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N doub N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N doub N 402 N sing N 403 N sing N 404 N sing N 405 N sing Y 406 N doub Y 407 N sing Y 408 N sing N 409 N sing Y 410 N doub N 411 N sing Y 412 N doub N 413 N sing Y 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N doub N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N doub N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N doub N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N doub N 471 N sing N 472 N sing N 473 N sing N 474 N sing Y 475 N doub Y 476 N sing Y 477 N sing N 478 N sing Y 479 N doub Y 480 N sing Y 481 N sing N 482 N sing Y 483 N sing Y 484 N doub N 485 N sing Y 486 N doub N 487 N sing Y 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N doub N 499 N sing N 500 N sing N 501 N sing N 502 N sing Y 503 N doub Y 504 N sing Y 505 N sing N 506 N sing Y 507 N doub N 508 N sing Y 509 N doub N 510 N sing Y 511 N sing N 512 N sing N 513 N sing N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N doub N 523 N sing N 524 N sing N 525 N sing N 526 N sing N 527 N sing N 528 N sing N 529 N sing N 530 N sing N 531 N sing N 532 N sing N 533 N sing US Proteins PSFGEY 0867 0887-3585 79 674 10.1002/PROT.22916 21117060 Crystal Structure of the Dimeric Oct6 (POU3F1) POU Domain Bound to Palindromic More DNA. 2011 10.2210/pdb2xsd/pdb pdb_00002xsd 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2010-09-19 ADSC CCD SINGLE WAVELENGTH M x-ray 1 1.075 1.0 X29A NSLS 1.075 SYNCHROTRON NSLS BEAMLINE X29A 3422.260 5'-D(*AP*TP*GP*CP*AP*TP*GP*AP*GP*GP*AP)-3' 1 syn polymer 3293.174 5'-D(*CP*CP*TP*CP*AP*TP*GP*CP*AP*TP*AP)-3' 1 syn polymer 18255.854 POU DOMAIN, CLASS 3, TRANSCRIPTION FACTOR 1 RESIDUES 240-402 1 man polymer 62.068 1,2-ETHANEDIOL 4 syn non-polymer 18.015 water 38 nat water OCTAMER-BINDING TRANSCRIPTION FACTOR 6, OCTAMER-BINDING PROTEIN 6, POU DOMAIN TRANSCRIPTION FACTOR SCIP, OTF-6, OCT-6 no no (DA)(DT)(DG)(DC)(DA)(DT)(DG)(DA)(DG)(DG)(DA) ATGCATGAGGA A polydeoxyribonucleotide no no (DC)(DC)(DT)(DC)(DA)(DT)(DG)(DC)(DA)(DT)(DA) CCTCATGCATA B polydeoxyribonucleotide no no GGEHSDEDAPSSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEET DSSSGSPTNLDKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA AGAG GGEHSDEDAPSSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEET DSSSGSPTNLDKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA AGAG C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n MOUSE sample 10090 MUS MUSCULUS 511693 ESCHERICHIA COLI BL21 PDEST-HISMBP 1 2.69 59.25 POLYALA MODEL WITH TERMINAL NT REMOVED 5.6 RESERVOIR: 0.2M MGCL2, 14%PEG4000 AND 0.1 SODIUM CITRATE PH5.6 PROTEIN-DNA COMPLEX: 10MG/ML IN 10 MM HEPES PH 7.0; 100 MM NACL EUQAL RESERVOIR AND PROTEIN VOLUMES MIXED -6.733 1 20 A 201 B 211 7.602 A_DA201:DT211_B 1 -12.689 0.175 -0.006 -0.089 -7.515 1 20 A 202 B 210 3.985 A_DT202:DA210_B 2 -15.747 0.049 0.278 -0.072 -17.330 1 19 A 203 B 209 -6.058 A_DG203:DC209_B 3 -23.457 -0.003 0.031 -0.204 -8.549 1 19 A 204 B 208 -1.934 A_DC204:DG208_B 4 7.221 0.270 -0.205 -0.228 -5.940 1 20 A 205 B 207 7.027 A_DA205:DT207_B 5 -6.023 0.019 0.039 -0.142 -0.084 1 20 A 206 B 206 0.061 A_DT206:DA206_B 6 -5.806 -0.190 -0.046 0.029 7.866 1 19 A 207 B 205 0.348 A_DG207:DC205_B 7 -8.590 -0.314 -0.146 -0.238 1.728 1 20 A 208 B 204 0.012 A_DA208:DT204_B 8 -11.804 0.049 -0.089 -0.048 1.489 1 19 A 209 B 203 7.128 A_DG209:DC203_B 9 -19.226 -0.301 0.313 -0.186 -3.451 1 19 A 210 B 202 -0.542 A_DG210:DC202_B 10 -15.170 0.172 0.069 -0.050 3.214 29.475 A A 201 202 6.161 B B 211 210 3.279 3.128 -0.352 -0.557 AA_DA201DT202:DA210DT211_BB 1 -1.061 2.090 29.294 -1.760 0.467 3.594 39.369 A A 202 203 5.830 B B 210 209 3.501 3.920 -1.378 0.484 AA_DT202DG203:DC209DA210_BB 2 -1.991 2.961 39.132 0.213 1.790 2.940 39.890 A A 203 204 -14.505 B B 209 208 3.171 -9.802 1.004 0.579 AA_DG203DC204:DG208DC209_BB 3 -0.166 0.245 38.714 1.923 -1.490 3.185 31.387 A A 204 205 6.177 B B 208 207 3.305 3.335 0.727 -0.746 AA_DC204DA205:DT207DG208_BB 4 -1.017 1.884 31.198 -2.002 -1.534 2.849 28.545 A A 205 206 10.411 B B 207 206 3.120 5.102 -1.179 -0.743 AA_DA205DT206:DA206DT207_BB 5 2.083 -4.250 28.019 -2.578 2.828 3.283 30.619 A A 206 207 15.264 B B 206 205 3.229 7.972 0.212 0.625 AA_DT206DG207:DC205DA206_BB 6 0.125 -0.240 29.587 -0.412 -0.377 3.411 39.393 A A 207 208 7.846 B B 205 204 3.350 5.267 -0.828 0.215 AA_DG207DA208:DT204DC205_BB 7 -3.742 5.575 38.881 -0.330 0.767 3.058 33.045 A A 208 209 12.753 B B 204 203 3.296 7.181 0.661 -0.287 AA_DA208DG209:DC203DT204_BB 8 -4.037 7.168 32.030 -1.704 -1.838 3.300 36.950 A A 209 210 5.422 B B 203 202 3.333 3.431 -0.586 -0.456 AA_DG209DG210:DC202DC203_BB 9 -1.574 2.488 36.764 -1.190 0.709 chem_comp_atom chem_comp_bond database_2 pdbx_database_status pdbx_initial_refinement_model struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Other Refinement description 1 0 2010-10-20 1 1 2011-05-08 1 2 2011-07-13 1 3 2023-12-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_sf _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id PDBE Y PDBE 2010-09-28 REL REL EDO 1,2-ETHANEDIOL HOH water 1E3O PDB ENTRY 1E3O PDB experimental model EDO 1398 4 EDO EDO 1398 C EDO 1399 4 EDO EDO 1399 C EDO 1400 4 EDO EDO 1400 C EDO 1401 4 EDO EDO 1401 C HOH 2001 5 HOH HOH 2001 A HOH 2002 5 HOH HOH 2002 A HOH 2003 5 HOH HOH 2003 A HOH 2004 5 HOH HOH 2004 A HOH 2005 5 HOH HOH 2005 A HOH 2001 5 HOH HOH 2001 B HOH 2002 5 HOH HOH 2002 B HOH 2003 5 HOH HOH 2003 B HOH 2004 5 HOH HOH 2004 B HOH 2005 5 HOH HOH 2005 B HOH 2006 5 HOH HOH 2006 B HOH 2007 5 HOH HOH 2007 B HOH 2008 5 HOH HOH 2008 B HOH 2009 5 HOH HOH 2009 B HOH 2010 5 HOH HOH 2010 B HOH 2011 5 HOH HOH 2011 B HOH 2012 5 HOH HOH 2012 B HOH 2013 5 HOH HOH 2013 B HOH 2014 5 HOH HOH 2014 B HOH 2015 5 HOH HOH 2015 B HOH 2001 5 HOH HOH 2001 C HOH 2002 5 HOH HOH 2002 C HOH 2003 5 HOH HOH 2003 C HOH 2004 5 HOH HOH 2004 C HOH 2005 5 HOH HOH 2005 C HOH 2006 5 HOH HOH 2006 C HOH 2007 5 HOH HOH 2007 C HOH 2008 5 HOH HOH 2008 C HOH 2009 5 HOH HOH 2009 C HOH 2010 5 HOH HOH 2010 C HOH 2011 5 HOH HOH 2011 C HOH 2012 5 HOH HOH 2012 C HOH 2013 5 HOH HOH 2013 C HOH 2014 5 HOH HOH 2014 C HOH 2015 5 HOH HOH 2015 C HOH 2016 5 HOH HOH 2016 C HOH 2017 5 HOH HOH 2017 C HOH 2018 5 HOH HOH 2018 C DA 201 n 1 DA 201 A DT 202 n 2 DT 202 A DG 203 n 3 DG 203 A DC 204 n 4 DC 204 A DA 205 n 5 DA 205 A DT 206 n 6 DT 206 A DG 207 n 7 DG 207 A DA 208 n 8 DA 208 A DG 209 n 9 DG 209 A DG 210 n 10 DG 210 A DA 211 n 11 DA 211 A DC 202 n 1 DC 202 B DC 203 n 2 DC 203 B DT 204 n 3 DT 204 B DC 205 n 4 DC 205 B DA 206 n 5 DA 206 B DT 207 n 6 DT 207 B DG 208 n 7 DG 208 B DC 209 n 8 DC 209 B DA 210 n 9 DA 210 B DT 211 n 10 DT 211 B DA 212 n 11 DA 212 B n 1 239 C n 2 240 C n 3 241 C n 4 242 C n 5 243 C n 6 244 C n 7 245 C n 8 246 C ALA 247 n 9 ALA 247 C PRO 248 n 10 PRO 248 C SER 249 n 11 SER 249 C SER 250 n 12 SER 250 C ASP 251 n 13 ASP 251 C ASP 252 n 14 ASP 252 C LEU 253 n 15 LEU 253 C GLU 254 n 16 GLU 254 C GLN 255 n 17 GLN 255 C PHE 256 n 18 PHE 256 C ALA 257 n 19 ALA 257 C LYS 258 n 20 LYS 258 C GLN 259 n 21 GLN 259 C PHE 260 n 22 PHE 260 C LYS 261 n 23 LYS 261 C GLN 262 n 24 GLN 262 C ARG 263 n 25 ARG 263 C ARG 264 n 26 ARG 264 C ILE 265 n 27 ILE 265 C LYS 266 n 28 LYS 266 C LEU 267 n 29 LEU 267 C GLY 268 n 30 GLY 268 C PHE 269 n 31 PHE 269 C THR 270 n 32 THR 270 C GLN 271 n 33 GLN 271 C ALA 272 n 34 ALA 272 C ASP 273 n 35 ASP 273 C VAL 274 n 36 VAL 274 C GLY 275 n 37 GLY 275 C LEU 276 n 38 LEU 276 C ALA 277 n 39 ALA 277 C LEU 278 n 40 LEU 278 C GLY 279 n 41 GLY 279 C THR 280 n 42 THR 280 C LEU 281 n 43 LEU 281 C TYR 282 n 44 TYR 282 C GLY 283 n 45 GLY 283 C ASN 284 n 46 ASN 284 C VAL 285 n 47 VAL 285 C PHE 286 n 48 PHE 286 C SER 287 n 49 SER 287 C GLN 288 n 50 GLN 288 C THR 289 n 51 THR 289 C THR 290 n 52 THR 290 C ILE 291 n 53 ILE 291 C CYS 292 n 54 CYS 292 C ARG 293 n 55 ARG 293 C PHE 294 n 56 PHE 294 C GLU 295 n 57 GLU 295 C ALA 296 n 58 ALA 296 C LEU 297 n 59 LEU 297 C GLN 298 n 60 GLN 298 C LEU 299 n 61 LEU 299 C SER 300 n 62 SER 300 C PHE 301 n 63 PHE 301 C LYS 302 n 64 LYS 302 C ASN 303 n 65 ASN 303 C MET 304 n 66 MET 304 C CYS 305 n 67 CYS 305 C LYS 306 n 68 LYS 306 C LEU 307 n 69 LEU 307 C LYS 308 n 70 LYS 308 C PRO 309 n 71 PRO 309 C LEU 310 n 72 LEU 310 C LEU 311 n 73 LEU 311 C ASN 312 n 74 ASN 312 C LYS 313 n 75 LYS 313 C TRP 314 n 76 TRP 314 C LEU 315 n 77 LEU 315 C GLU 316 n 78 GLU 316 C GLU 317 n 79 GLU 317 C THR 318 n 80 THR 318 C ASP 319 n 81 ASP 319 C n 82 320 C n 83 321 C n 84 322 C n 85 323 C n 86 324 C n 87 325 C n 88 326 C n 89 327 C n 90 328 C n 91 329 C n 92 330 C n 93 331 C n 94 332 C n 95 333 C n 96 334 C n 97 335 C n 98 336 C n 99 337 C n 100 338 C n 101 339 C n 102 340 C n 103 341 C n 104 342 C SER 343 n 105 SER 343 C ILE 344 n 106 ILE 344 C GLU 345 n 107 GLU 345 C VAL 346 n 108 VAL 346 C GLY 347 n 109 GLY 347 C VAL 348 n 110 VAL 348 C LYS 349 n 111 LYS 349 C GLY 350 n 112 GLY 350 C ALA 351 n 113 ALA 351 C LEU 352 n 114 LEU 352 C GLU 353 n 115 GLU 353 C SER 354 n 116 SER 354 C HIS 355 n 117 HIS 355 C PHE 356 n 118 PHE 356 C LEU 357 n 119 LEU 357 C LYS 358 n 120 LYS 358 C CYS 359 n 121 CYS 359 C PRO 360 n 122 PRO 360 C LYS 361 n 123 LYS 361 C PRO 362 n 124 PRO 362 C SER 363 n 125 SER 363 C ALA 364 n 126 ALA 364 C HIS 365 n 127 HIS 365 C GLU 366 n 128 GLU 366 C ILE 367 n 129 ILE 367 C THR 368 n 130 THR 368 C GLY 369 n 131 GLY 369 C LEU 370 n 132 LEU 370 C ALA 371 n 133 ALA 371 C ASP 372 n 134 ASP 372 C SER 373 n 135 SER 373 C LEU 374 n 136 LEU 374 C GLN 375 n 137 GLN 375 C LEU 376 n 138 LEU 376 C GLU 377 n 139 GLU 377 C LYS 378 n 140 LYS 378 C GLU 379 n 141 GLU 379 C VAL 380 n 142 VAL 380 C VAL 381 n 143 VAL 381 C ARG 382 n 144 ARG 382 C VAL 383 n 145 VAL 383 C TRP 384 n 146 TRP 384 C PHE 385 n 147 PHE 385 C CYS 386 n 148 CYS 386 C ASN 387 n 149 ASN 387 C ARG 388 n 150 ARG 388 C ARG 389 n 151 ARG 389 C GLN 390 n 152 GLN 390 C LYS 391 n 153 LYS 391 C GLU 392 n 154 GLU 392 C LYS 393 n 155 LYS 393 C ARG 394 n 156 ARG 394 C MET 395 n 157 MET 395 C THR 396 n 158 THR 396 C PRO 397 n 159 PRO 397 C n 160 398 C n 161 399 C n 162 400 C n 163 401 C n 164 402 C 4.8088 -1.4276 -0.7499 1.7959 0.1441 0.1806 -0.0403 -1.2790 -0.0708 0.7314 0.2267 0.0953 0.2249 0.5224 -0.2452 0.5997 0.1115 -0.0939 0.5720 -0.0337 0.3564 refined -3.5520 846.7952 38.2165 X-RAY DIFFRACTION 0.8828 0.3605 0.5584 0.1655 0.1076 1.0046 0.1365 -0.1973 0.0959 0.1326 -0.1934 -0.1058 -0.0954 -0.0666 0.0191 0.3738 -0.0112 0.0155 0.3752 -0.0274 0.4646 refined -8.9087 854.9192 29.5247 X-RAY DIFFRACTION 0.1904 0.1074 -0.1231 0.1995 -0.6044 2.3901 -0.0858 0.0379 0.1246 0.0656 0.0380 -0.5674 0.3187 0.3448 -0.0070 0.3382 0.0011 -0.1134 0.3453 -0.0285 0.5510 refined -0.6780 851.2381 31.5557 X-RAY DIFFRACTION 6.6646 0.1063 1.6122 1.9528 -1.1005 3.7820 0.5054 1.4054 -0.9477 -0.6820 -0.1727 0.0733 2.6305 -0.1654 -0.0355 1.5153 -0.2198 -0.0258 0.8037 -0.2321 0.7742 refined -15.7938 831.1885 7.4362 X-RAY DIFFRACTION 8.2923 -0.9409 -0.2339 1.9143 -0.2394 0.0455 0.3935 1.6933 0.2525 -1.1756 -0.1261 -0.3613 1.1584 0.2374 -0.2419 0.9559 -0.0776 0.0256 0.7796 -0.0912 0.4879 refined -14.8282 839.0312 7.4425 X-RAY DIFFRACTION 5.7902 3.8949 6.0263 6.9746 5.8898 7.0428 0.5475 -0.8835 0.1709 0.6126 -1.3153 -0.5177 1.1006 -0.7968 0.3208 0.6779 0.0521 0.0885 0.5638 -0.1469 0.4930 refined -6.1938 837.0064 20.0448 X-RAY DIFFRACTION 4.7212 0.1495 0.8426 1.0964 -0.3255 1.6271 0.0797 1.1136 0.3153 -0.4195 0.0554 -0.2289 0.4492 0.1341 -0.0613 0.4788 0.0376 0.1238 0.6443 0.0056 0.4182 refined -9.9642 847.5584 13.8428 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 (CHAIN C AND RESID 247:269) X-RAY DIFFRACTION 2 (CHAIN C AND RESID 270:296) X-RAY DIFFRACTION 3 (CHAIN C AND RESID 297:319) X-RAY DIFFRACTION 4 (CHAIN C AND RESID 343:375) X-RAY DIFFRACTION 5 (CHAIN C AND RESID 376:387) X-RAY DIFFRACTION 6 (CHAIN C AND RESID 388:397) X-RAY DIFFRACTION 7 (CHAIN A OR CHAIN B) author_and_software_defined_assembly PISA 3 trimeric 4070 -14.5 10000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A HOH 2001 H HOH 1 B HOH 2013 I HOH 1 A O5' DA 201 A O5' DA 1 1 Y 1 B C5' DA 212 B C5' DA 11 1 Y 1 B C4' DA 212 B C4' DA 11 1 Y 1 B O4' DA 212 B O4' DA 11 1 Y 1 B C3' DA 212 B C3' DA 11 1 Y 1 B O3' DA 212 B O3' DA 11 1 Y 1 B C2' DA 212 B C2' DA 11 1 Y 1 B C1' DA 212 B C1' DA 11 1 Y 1 B N9 DA 212 B N9 DA 11 1 Y 1 B C8 DA 212 B C8 DA 11 1 Y 1 B N7 DA 212 B N7 DA 11 1 Y 1 B C5 DA 212 B C5 DA 11 1 Y 1 B C6 DA 212 B C6 DA 11 1 Y 1 B N6 DA 212 B N6 DA 11 1 Y 1 B N1 DA 212 B N1 DA 11 1 Y 1 B C2 DA 212 B C2 DA 11 1 Y 1 B N3 DA 212 B N3 DA 11 1 Y 1 B C4 DA 212 B C4 DA 11 1 Y 1 C GLY 239 C GLY 1 1 Y 1 C GLY 240 C GLY 2 1 Y 1 C GLU 241 C GLU 3 1 Y 1 C HIS 242 C HIS 4 1 Y 1 C SER 243 C SER 5 1 Y 1 C ASP 244 C ASP 6 1 Y 1 C GLU 245 C GLU 7 1 Y 1 C ASP 246 C ASP 8 1 Y 1 C SER 320 C SER 82 1 Y 1 C SER 321 C SER 83 1 Y 1 C SER 322 C SER 84 1 Y 1 C GLY 323 C GLY 85 1 Y 1 C SER 324 C SER 86 1 Y 1 C PRO 325 C PRO 87 1 Y 1 C THR 326 C THR 88 1 Y 1 C ASN 327 C ASN 89 1 Y 1 C LEU 328 C LEU 90 1 Y 1 C ASP 329 C ASP 91 1 Y 1 C LYS 330 C LYS 92 1 Y 1 C ILE 331 C ILE 93 1 Y 1 C ALA 332 C ALA 94 1 Y 1 C ALA 333 C ALA 95 1 Y 1 C GLN 334 C GLN 96 1 Y 1 C GLY 335 C GLY 97 1 Y 1 C ARG 336 C ARG 98 1 Y 1 C LYS 337 C LYS 99 1 Y 1 C ARG 338 C ARG 100 1 Y 1 C LYS 339 C LYS 101 1 Y 1 C LYS 340 C LYS 102 1 Y 1 C ARG 341 C ARG 103 1 Y 1 C THR 342 C THR 104 1 Y 1 C ALA 398 C ALA 160 1 Y 1 C ALA 399 C ALA 161 1 Y 1 C GLY 400 C GLY 162 1 Y 1 C ALA 401 C ALA 163 1 Y 1 C GLY 402 C GLY 164 1 Y 1 -5.01 0.70 108.00 102.99 A A A O4' C1' N9 DA DA DA 201 201 201 N 1 -5.61 0.80 102.40 96.79 A A A C3' C2' C1' DG DG DG 207 207 207 N 1 -5.35 0.70 108.00 102.65 B B B O4' C1' N1 DC DC DC 209 209 209 N 1 C GLN 298 -95.17 43.60 72.2 -0.7021 0.0000 8.0745 5.6341 -0.0000 -4.9321 0.2317 0.1940 0.1978 2.049 41.389 1599 15949 10.03 97.63 0.32 1 1.34 MOLECULAR REPLACEMENT 25.22 0.90 1.11 PDB ENTRY 1E3O ML FLAT BULK SOLVENT MODEL 54.941 0.336 2.049 41.389 38 1510 16 431 1025 0.007 1537 1.153 2148 21.582 606 0.057 239 0.004 199 0.2924 0.2696 2.1152 138 1108 85.00 0.2699 0.2451 2.1908 134 1289 96.00 0.2727 0.2286 2.2785 135 1320 100.00 0.2719 0.2185 2.3822 158 1332 100.00 0.2788 0.2300 2.5077 143 1336 100.00 0.2590 0.2086 2.6648 153 1318 100.00 0.2264 0.2104 2.8705 144 1332 100.00 0.3097 0.2187 3.1593 151 1345 100.00 0.2209 0.1942 3.6163 141 1277 96.00 0.2138 0.1646 4.5552 147 1329 98.00 0.1859 0.1643 41.3979 155 1364 99.00 2.05 50.00 2XSD 15965 2.0 0.04 1 31.70 7.2 98.1 0.45 2.05 2.12 1.90 1 5.1 89.2 refinement PHENIX (PHENIX.REFINE) phasing PHASER Crystal Structure of the dimeric Oct-6 (Pou3f1) POU domain bound to palindromic MORE DNA 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N 4 N N 5 N N 5 N N 5 N N C SER 249 C SER 11 HELX_P C LEU 267 C LEU 29 1 1 19 C THR 270 C THR 32 HELX_P C GLY 283 C GLY 45 1 2 14 C SER 287 C SER 49 HELX_P C ALA 296 C ALA 58 1 3 10 C SER 300 C SER 62 HELX_P C ASP 319 C ASP 81 1 4 20 C GLU 345 C GLU 107 HELX_P C CYS 359 C CYS 121 1 5 15 C SER 363 C SER 125 HELX_P C GLN 375 C GLN 137 1 6 13 C GLU 377 C GLU 139 HELX_P C LYS 393 C LYS 155 1 7 17 hydrog WATSON-CRICK A DA 201 A N1 DA 1 1_555 B DT 211 B N3 DT 10 1_555 hydrog WATSON-CRICK A DA 201 A N6 DA 1 1_555 B DT 211 B O4 DT 10 1_555 hydrog WATSON-CRICK A DT 202 A N3 DT 2 1_555 B DA 210 B N1 DA 9 1_555 hydrog WATSON-CRICK A DT 202 A O4 DT 2 1_555 B DA 210 B N6 DA 9 1_555 hydrog WATSON-CRICK A DG 203 A N1 DG 3 1_555 B DC 209 B N3 DC 8 1_555 hydrog WATSON-CRICK A DG 203 A N2 DG 3 1_555 B DC 209 B O2 DC 8 1_555 hydrog WATSON-CRICK A DG 203 A O6 DG 3 1_555 B DC 209 B N4 DC 8 1_555 hydrog WATSON-CRICK A DC 204 A N3 DC 4 1_555 B DG 208 B N1 DG 7 1_555 hydrog WATSON-CRICK A DC 204 A N4 DC 4 1_555 B DG 208 B O6 DG 7 1_555 hydrog WATSON-CRICK A DC 204 A O2 DC 4 1_555 B DG 208 B N2 DG 7 1_555 hydrog WATSON-CRICK A DA 205 A N1 DA 5 1_555 B DT 207 B N3 DT 6 1_555 hydrog WATSON-CRICK A DA 205 A N6 DA 5 1_555 B DT 207 B O4 DT 6 1_555 hydrog WATSON-CRICK A DT 206 A N3 DT 6 1_555 B DA 206 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 206 A O4 DT 6 1_555 B DA 206 B N6 DA 5 1_555 hydrog WATSON-CRICK A DG 207 A N1 DG 7 1_555 B DC 205 B N3 DC 4 1_555 hydrog WATSON-CRICK A DG 207 A N2 DG 7 1_555 B DC 205 B O2 DC 4 1_555 hydrog WATSON-CRICK A DG 207 A O6 DG 7 1_555 B DC 205 B N4 DC 4 1_555 hydrog WATSON-CRICK A DA 208 A N1 DA 8 1_555 B DT 204 B N3 DT 3 1_555 hydrog WATSON-CRICK A DA 208 A N6 DA 8 1_555 B DT 204 B O4 DT 3 1_555 hydrog WATSON-CRICK A DG 209 A N1 DG 9 1_555 B DC 203 B N3 DC 2 1_555 hydrog WATSON-CRICK A DG 209 A N2 DG 9 1_555 B DC 203 B O2 DC 2 1_555 hydrog WATSON-CRICK A DG 209 A O6 DG 9 1_555 B DC 203 B N4 DC 2 1_555 hydrog WATSON-CRICK A DG 210 A N1 DG 10 1_555 B DC 202 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 210 A N2 DG 10 1_555 B DC 202 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 210 A O6 DG 10 1_555 B DC 202 B N4 DC 1 1_555 TRANSCRIPTION/DNA TRANSCRIPTION-DNA COMPLEX, SOX 2XSD PDB 1 2XSD 2XSD PDB 2 2XSD PO3F1_MOUSE UNP 3 P21952 201 211 2XSD 201 211 2XSD A 1 1 11 202 212 2XSD 202 212 2XSD B 2 1 11 240 402 2XSD 240 402 P21952 C 3 2 164 3 expression tag GLY 239 2XSD C P21952 UNP 1 BINDING SITE FOR RESIDUE EDO C 1398 C EDO 1398 Software 6 BINDING SITE FOR RESIDUE EDO C 1399 C EDO 1399 Software 4 BINDING SITE FOR RESIDUE EDO C 1400 C EDO 1400 Software 6 BINDING SITE FOR RESIDUE EDO C 1401 C EDO 1401 Software 4 C LEU 281 C LEU 43 6 4_546 C TYR 282 C TYR 44 6 4_546 C SER 300 C SER 62 6 1_555 C PHE 301 C PHE 63 6 1_555 C LYS 302 C LYS 64 6 1_555 C LYS 393 C LYS 155 6 1_555 B DT 211 B DT 10 4 2_556 C ARG 264 C ARG 26 4 1_555 C PHE 269 C PHE 31 4 1_555 C HOH 2018 J HOH 4 1_555 A DT 206 A DT 6 6 1_555 A DG 207 A DG 7 6 1_555 B DC 205 B DC 4 6 1_555 C CYS 386 C CYS 148 6 1_555 C ASN 387 C ASN 149 6 1_555 C GLN 390 C GLN 152 6 1_555 B DA 210 B DA 9 4 2_556 C ASP 273 C ASP 35 4 1_555 C HOH 2004 J HOH 4 1_555 C HOH 2018 J HOH 4 1_555 5 C 1 2 1