0.021741 0.000000 0.000000 0.000000 0.017390 0.000000 0.000000 0.000000 0.013209 0.00000 0.00000 0.00000 Banner, D.W. Benz, J.M. Haap, W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 45.997 57.504 75.708 C25 H25 Cl2 N3 O4 S 534.455 (2S,4R)-1-[1-(4-chlorophenyl)cyclopropyl]carbonyl-4-(2-chlorophenyl)sulfonyl-N-[1-(iminomethyl)cyclopropyl]pyrrolidine-2-carboxamide non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking DE Chemmedchem 1860-7179 6 2048 10.1002/CMDC.201100353 21898833 Halogen Bonding at the Active Sites of Human Cathepsin L and Mek1 Kinase: Efficient Interactions in Different Environments. 2011 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 PIXEL 2011-03-17 DECTRIS PILATUS 6M SINGLE WAVELENGTH M x-ray 1 1.00 1.0 X10SA SLS 1.00 SYNCHROTRON SLS BEAMLINE X10SA 24191.701 CATHEPSIN L1 3.4.22.15 CATALYTIC DOMAIN, RESIDUES 114-333 1 man polymer 534.455 (2S,4R)-1-[1-(4-chlorophenyl)cyclopropyl]carbonyl-4-(2-chlorophenyl)sulfonyl-N-[1-(iminomethyl)cyclopropyl]pyrrolidine-2-carboxamide 1 syn non-polymer 18.015 water 287 nat water MAJOR EXCRETED PROTEIN, MEP, CATHEPSIN L1 HEAVY CHAIN, CATHEPSIN L1 LIGHT CHAIN no no APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDN GGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSED MDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDN GGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSED MDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n HUMAN sample 9606 HOMO SAPIENS 562 ESCHERICHIA COLI 1 1.95 37.1 ISOMORPHOUS TO 2YJ2 0.1M MAGNESIUM FORMATE, 15 % PEG 3350 repository Initial release Atomic model Derived calculations Non-polymer description Other 1 0 2011-11-23 1 1 2011-11-30 CRYSTAL STRUCTURE OF A CYSTEINE PROTEASE PROFORM CRYSTAL STRUCTURE OF PROCATHEPSIN L CATHEPSIN L WITH A NITRILE INHIBITOR CATHEPSIN L WITH A NITRILE INHIBITOR CATHEPSIN L WITH A NITRILE INHIBITOR CATHSILICATEIN, A CHIMERA CRYSTAL STRUCTURE OF MHC CLASS II ASSOCIATED P41 II FRAGMENT IN COMPLEX WITH CATHEPSIN L CATHEPSIN L WITH A NITRILE INHIBITOR DESIGN OF NON-COVALENT INHIBITORS OF HUMAN CATHEPSIN L .FROM THE 96-RESIDUE PROREGION TO OPTIMIZED TRIPEPTIDES CATHEPSIN L WITH A NITRILE INHIBITOR CATHEPSIN L WITH A NITRILE INHIBITOR CATHEPSIN L WITH A NITRILE INHIBITOR PDBE Y PDBE 2011-05-19 REL 1 A O HOH 2004 5.90 424 (2S,4R)-1-[1-(4-chlorophenyl)cyclopropyl]carbonyl-4-(2-chlorophenyl)sulfonyl-N-[1-(iminomethyl)cyclopropyl]pyrrolidine-2-carboxamide HOH water 424 1221 2 424 424 1221 A HOH 2001 3 HOH HOH 2001 A HOH 2002 3 HOH HOH 2002 A HOH 2003 3 HOH HOH 2003 A HOH 2004 3 HOH HOH 2004 A HOH 2005 3 HOH HOH 2005 A HOH 2006 3 HOH HOH 2006 A HOH 2007 3 HOH HOH 2007 A HOH 2008 3 HOH HOH 2008 A HOH 2009 3 HOH HOH 2009 A HOH 2010 3 HOH HOH 2010 A HOH 2011 3 HOH HOH 2011 A HOH 2012 3 HOH HOH 2012 A HOH 2013 3 HOH HOH 2013 A HOH 2014 3 HOH HOH 2014 A HOH 2015 3 HOH HOH 2015 A HOH 2016 3 HOH HOH 2016 A HOH 2017 3 HOH HOH 2017 A HOH 2018 3 HOH HOH 2018 A HOH 2019 3 HOH HOH 2019 A HOH 2020 3 HOH HOH 2020 A HOH 2021 3 HOH HOH 2021 A HOH 2022 3 HOH HOH 2022 A HOH 2023 3 HOH HOH 2023 A HOH 2024 3 HOH HOH 2024 A HOH 2025 3 HOH HOH 2025 A HOH 2026 3 HOH HOH 2026 A HOH 2027 3 HOH HOH 2027 A HOH 2028 3 HOH HOH 2028 A HOH 2029 3 HOH HOH 2029 A HOH 2030 3 HOH HOH 2030 A HOH 2031 3 HOH HOH 2031 A HOH 2032 3 HOH HOH 2032 A HOH 2033 3 HOH HOH 2033 A HOH 2034 3 HOH HOH 2034 A HOH 2035 3 HOH HOH 2035 A HOH 2036 3 HOH HOH 2036 A HOH 2037 3 HOH HOH 2037 A HOH 2038 3 HOH HOH 2038 A HOH 2039 3 HOH HOH 2039 A HOH 2040 3 HOH HOH 2040 A HOH 2041 3 HOH HOH 2041 A HOH 2042 3 HOH HOH 2042 A HOH 2043 3 HOH HOH 2043 A HOH 2044 3 HOH HOH 2044 A HOH 2045 3 HOH HOH 2045 A HOH 2046 3 HOH HOH 2046 A HOH 2047 3 HOH HOH 2047 A HOH 2048 3 HOH HOH 2048 A HOH 2049 3 HOH HOH 2049 A HOH 2050 3 HOH HOH 2050 A HOH 2051 3 HOH HOH 2051 A HOH 2052 3 HOH HOH 2052 A HOH 2053 3 HOH HOH 2053 A HOH 2054 3 HOH HOH 2054 A HOH 2055 3 HOH HOH 2055 A HOH 2056 3 HOH HOH 2056 A HOH 2057 3 HOH HOH 2057 A HOH 2058 3 HOH HOH 2058 A HOH 2059 3 HOH HOH 2059 A HOH 2060 3 HOH HOH 2060 A HOH 2061 3 HOH HOH 2061 A HOH 2062 3 HOH HOH 2062 A HOH 2063 3 HOH HOH 2063 A HOH 2064 3 HOH HOH 2064 A HOH 2065 3 HOH HOH 2065 A HOH 2066 3 HOH HOH 2066 A HOH 2067 3 HOH HOH 2067 A HOH 2068 3 HOH HOH 2068 A HOH 2069 3 HOH HOH 2069 A HOH 2070 3 HOH HOH 2070 A HOH 2071 3 HOH HOH 2071 A HOH 2072 3 HOH HOH 2072 A HOH 2073 3 HOH HOH 2073 A HOH 2074 3 HOH HOH 2074 A HOH 2075 3 HOH HOH 2075 A HOH 2076 3 HOH HOH 2076 A HOH 2077 3 HOH HOH 2077 A HOH 2078 3 HOH HOH 2078 A HOH 2079 3 HOH HOH 2079 A HOH 2080 3 HOH HOH 2080 A HOH 2081 3 HOH HOH 2081 A HOH 2082 3 HOH HOH 2082 A HOH 2083 3 HOH HOH 2083 A HOH 2084 3 HOH HOH 2084 A HOH 2085 3 HOH HOH 2085 A HOH 2086 3 HOH HOH 2086 A HOH 2087 3 HOH HOH 2087 A HOH 2088 3 HOH HOH 2088 A HOH 2089 3 HOH HOH 2089 A HOH 2090 3 HOH HOH 2090 A HOH 2091 3 HOH HOH 2091 A HOH 2092 3 HOH HOH 2092 A HOH 2093 3 HOH HOH 2093 A HOH 2094 3 HOH HOH 2094 A HOH 2095 3 HOH HOH 2095 A HOH 2096 3 HOH HOH 2096 A HOH 2097 3 HOH HOH 2097 A HOH 2098 3 HOH HOH 2098 A HOH 2099 3 HOH HOH 2099 A HOH 2100 3 HOH HOH 2100 A HOH 2101 3 HOH HOH 2101 A HOH 2102 3 HOH HOH 2102 A HOH 2103 3 HOH HOH 2103 A HOH 2104 3 HOH HOH 2104 A HOH 2105 3 HOH HOH 2105 A HOH 2106 3 HOH HOH 2106 A HOH 2107 3 HOH HOH 2107 A HOH 2108 3 HOH HOH 2108 A HOH 2109 3 HOH HOH 2109 A HOH 2110 3 HOH HOH 2110 A HOH 2111 3 HOH HOH 2111 A HOH 2112 3 HOH HOH 2112 A HOH 2113 3 HOH HOH 2113 A HOH 2114 3 HOH HOH 2114 A HOH 2115 3 HOH HOH 2115 A HOH 2116 3 HOH HOH 2116 A HOH 2117 3 HOH HOH 2117 A HOH 2118 3 HOH HOH 2118 A HOH 2119 3 HOH HOH 2119 A HOH 2120 3 HOH HOH 2120 A HOH 2121 3 HOH HOH 2121 A HOH 2122 3 HOH HOH 2122 A HOH 2123 3 HOH HOH 2123 A HOH 2124 3 HOH HOH 2124 A HOH 2125 3 HOH HOH 2125 A HOH 2126 3 HOH HOH 2126 A HOH 2127 3 HOH HOH 2127 A HOH 2128 3 HOH HOH 2128 A HOH 2129 3 HOH HOH 2129 A HOH 2130 3 HOH HOH 2130 A HOH 2131 3 HOH HOH 2131 A HOH 2132 3 HOH HOH 2132 A HOH 2133 3 HOH HOH 2133 A HOH 2134 3 HOH HOH 2134 A HOH 2135 3 HOH HOH 2135 A HOH 2136 3 HOH HOH 2136 A HOH 2137 3 HOH HOH 2137 A HOH 2138 3 HOH HOH 2138 A HOH 2139 3 HOH HOH 2139 A HOH 2140 3 HOH HOH 2140 A HOH 2141 3 HOH HOH 2141 A HOH 2142 3 HOH HOH 2142 A HOH 2143 3 HOH HOH 2143 A HOH 2144 3 HOH HOH 2144 A HOH 2145 3 HOH HOH 2145 A HOH 2146 3 HOH HOH 2146 A HOH 2147 3 HOH HOH 2147 A HOH 2148 3 HOH HOH 2148 A HOH 2149 3 HOH HOH 2149 A HOH 2150 3 HOH HOH 2150 A HOH 2151 3 HOH HOH 2151 A HOH 2152 3 HOH HOH 2152 A HOH 2153 3 HOH HOH 2153 A HOH 2154 3 HOH HOH 2154 A HOH 2155 3 HOH HOH 2155 A HOH 2156 3 HOH HOH 2156 A HOH 2157 3 HOH HOH 2157 A HOH 2158 3 HOH HOH 2158 A HOH 2159 3 HOH HOH 2159 A HOH 2160 3 HOH HOH 2160 A HOH 2161 3 HOH HOH 2161 A HOH 2162 3 HOH HOH 2162 A HOH 2163 3 HOH HOH 2163 A HOH 2164 3 HOH HOH 2164 A HOH 2165 3 HOH HOH 2165 A HOH 2166 3 HOH HOH 2166 A HOH 2167 3 HOH HOH 2167 A HOH 2168 3 HOH HOH 2168 A HOH 2169 3 HOH HOH 2169 A HOH 2170 3 HOH HOH 2170 A HOH 2171 3 HOH HOH 2171 A HOH 2172 3 HOH HOH 2172 A HOH 2173 3 HOH HOH 2173 A HOH 2174 3 HOH HOH 2174 A HOH 2175 3 HOH HOH 2175 A HOH 2176 3 HOH HOH 2176 A HOH 2177 3 HOH HOH 2177 A HOH 2178 3 HOH HOH 2178 A HOH 2179 3 HOH HOH 2179 A HOH 2180 3 HOH HOH 2180 A HOH 2181 3 HOH HOH 2181 A HOH 2182 3 HOH HOH 2182 A HOH 2183 3 HOH HOH 2183 A HOH 2184 3 HOH HOH 2184 A HOH 2185 3 HOH HOH 2185 A HOH 2186 3 HOH HOH 2186 A HOH 2187 3 HOH HOH 2187 A HOH 2188 3 HOH HOH 2188 A HOH 2189 3 HOH HOH 2189 A HOH 2190 3 HOH HOH 2190 A HOH 2191 3 HOH HOH 2191 A HOH 2192 3 HOH HOH 2192 A HOH 2193 3 HOH HOH 2193 A HOH 2194 3 HOH HOH 2194 A HOH 2195 3 HOH HOH 2195 A HOH 2196 3 HOH HOH 2196 A HOH 2197 3 HOH HOH 2197 A HOH 2198 3 HOH HOH 2198 A HOH 2199 3 HOH HOH 2199 A HOH 2200 3 HOH HOH 2200 A HOH 2201 3 HOH HOH 2201 A HOH 2202 3 HOH HOH 2202 A HOH 2203 3 HOH HOH 2203 A HOH 2204 3 HOH HOH 2204 A HOH 2205 3 HOH HOH 2205 A HOH 2206 3 HOH HOH 2206 A HOH 2207 3 HOH HOH 2207 A HOH 2208 3 HOH HOH 2208 A HOH 2209 3 HOH HOH 2209 A HOH 2210 3 HOH HOH 2210 A HOH 2211 3 HOH HOH 2211 A HOH 2212 3 HOH HOH 2212 A HOH 2213 3 HOH HOH 2213 A HOH 2214 3 HOH HOH 2214 A HOH 2215 3 HOH HOH 2215 A HOH 2216 3 HOH HOH 2216 A HOH 2217 3 HOH HOH 2217 A HOH 2218 3 HOH HOH 2218 A HOH 2219 3 HOH HOH 2219 A HOH 2220 3 HOH HOH 2220 A HOH 2221 3 HOH HOH 2221 A HOH 2222 3 HOH HOH 2222 A HOH 2223 3 HOH HOH 2223 A HOH 2224 3 HOH HOH 2224 A HOH 2225 3 HOH HOH 2225 A HOH 2226 3 HOH HOH 2226 A HOH 2227 3 HOH HOH 2227 A HOH 2228 3 HOH HOH 2228 A HOH 2229 3 HOH HOH 2229 A HOH 2230 3 HOH HOH 2230 A HOH 2231 3 HOH HOH 2231 A HOH 2232 3 HOH HOH 2232 A HOH 2233 3 HOH HOH 2233 A HOH 2234 3 HOH HOH 2234 A HOH 2235 3 HOH HOH 2235 A HOH 2236 3 HOH HOH 2236 A HOH 2237 3 HOH HOH 2237 A HOH 2238 3 HOH HOH 2238 A HOH 2239 3 HOH HOH 2239 A HOH 2240 3 HOH HOH 2240 A HOH 2241 3 HOH HOH 2241 A HOH 2242 3 HOH HOH 2242 A HOH 2243 3 HOH HOH 2243 A HOH 2244 3 HOH HOH 2244 A HOH 2245 3 HOH HOH 2245 A HOH 2246 3 HOH HOH 2246 A HOH 2247 3 HOH HOH 2247 A HOH 2248 3 HOH HOH 2248 A HOH 2249 3 HOH HOH 2249 A HOH 2250 3 HOH HOH 2250 A HOH 2251 3 HOH HOH 2251 A HOH 2252 3 HOH HOH 2252 A HOH 2253 3 HOH HOH 2253 A HOH 2254 3 HOH HOH 2254 A HOH 2255 3 HOH HOH 2255 A HOH 2256 3 HOH HOH 2256 A HOH 2257 3 HOH HOH 2257 A HOH 2258 3 HOH HOH 2258 A HOH 2259 3 HOH HOH 2259 A HOH 2260 3 HOH HOH 2260 A HOH 2261 3 HOH HOH 2261 A HOH 2262 3 HOH HOH 2262 A HOH 2263 3 HOH HOH 2263 A HOH 2264 3 HOH HOH 2264 A HOH 2265 3 HOH HOH 2265 A HOH 2266 3 HOH HOH 2266 A HOH 2267 3 HOH HOH 2267 A HOH 2268 3 HOH HOH 2268 A HOH 2269 3 HOH HOH 2269 A HOH 2270 3 HOH HOH 2270 A HOH 2271 3 HOH HOH 2271 A HOH 2272 3 HOH HOH 2272 A HOH 2273 3 HOH HOH 2273 A HOH 2274 3 HOH HOH 2274 A HOH 2275 3 HOH HOH 2275 A HOH 2276 3 HOH HOH 2276 A HOH 2277 3 HOH HOH 2277 A HOH 2278 3 HOH HOH 2278 A HOH 2279 3 HOH HOH 2279 A HOH 2280 3 HOH HOH 2280 A HOH 2281 3 HOH HOH 2281 A HOH 2282 3 HOH HOH 2282 A HOH 2283 3 HOH HOH 2283 A HOH 2284 3 HOH HOH 2284 A HOH 2285 3 HOH HOH 2285 A HOH 2286 3 HOH HOH 2286 A HOH 2287 3 HOH HOH 2287 A ALA 1 n 1 ALA 1 A PRO 2 n 2 PRO 2 A ARG 3 n 3 ARG 3 A SER 4 n 4 SER 4 A VAL 5 n 5 VAL 5 A ASP 6 n 6 ASP 6 A TRP 7 n 7 TRP 7 A ARG 8 n 8 ARG 8 A GLU 9 n 9 GLU 9 A LYS 10 n 10 LYS 10 A GLY 11 n 11 GLY 11 A TYR 12 n 12 TYR 12 A VAL 13 n 13 VAL 13 A THR 14 n 14 THR 14 A PRO 15 n 15 PRO 15 A VAL 16 n 16 VAL 16 A LYS 17 n 17 LYS 17 A ASN 18 n 18 ASN 18 A GLN 19 n 19 GLN 19 A GLY 20 n 20 GLY 20 A GLN 21 n 21 GLN 21 A CYS 22 n 22 CYS 22 A GLY 23 n 23 GLY 23 A SER 24 n 24 SER 24 A CYS 25 n 25 CYS 25 A TRP 26 n 26 TRP 26 A ALA 27 n 27 ALA 27 A PHE 28 n 28 PHE 28 A SER 29 n 29 SER 29 A ALA 30 n 30 ALA 30 A THR 31 n 31 THR 31 A GLY 32 n 32 GLY 32 A ALA 33 n 33 ALA 33 A LEU 34 n 34 LEU 34 A GLU 35 n 35 GLU 35 A GLY 36 n 36 GLY 36 A GLN 37 n 37 GLN 37 A MET 38 n 38 MET 38 A PHE 39 n 39 PHE 39 A ARG 40 n 40 ARG 40 A LYS 41 n 41 LYS 41 A THR 42 n 42 THR 42 A GLY 43 n 43 GLY 43 A ARG 44 n 44 ARG 44 A LEU 45 n 45 LEU 45 A ILE 46 n 46 ILE 46 A SER 47 n 47 SER 47 A LEU 48 n 48 LEU 48 A SER 49 n 49 SER 49 A GLU 50 n 50 GLU 50 A GLN 51 n 51 GLN 51 A ASN 52 n 52 ASN 52 A LEU 53 n 53 LEU 53 A VAL 54 n 54 VAL 54 A ASP 55 n 55 ASP 55 A CYS 56 n 56 CYS 56 A SER 57 n 57 SER 57 A GLY 58 n 58 GLY 58 A PRO 59 n 59 PRO 59 A GLN 60 n 60 GLN 60 A GLY 61 n 61 GLY 61 A ASN 62 n 62 ASN 62 A GLU 63 n 63 GLU 63 A GLY 64 n 64 GLY 64 A CYS 65 n 65 CYS 65 A ASN 66 n 66 ASN 66 A GLY 67 n 67 GLY 67 A GLY 68 n 68 GLY 68 A LEU 69 n 69 LEU 69 A MET 70 n 70 MET 70 A ASP 71 n 71 ASP 71 A TYR 72 n 72 TYR 72 A ALA 73 n 73 ALA 73 A PHE 74 n 74 PHE 74 A GLN 75 n 75 GLN 75 A TYR 76 n 76 TYR 76 A VAL 77 n 77 VAL 77 A GLN 78 n 78 GLN 78 A ASP 79 n 79 ASP 79 A ASN 80 n 80 ASN 80 A GLY 81 n 81 GLY 81 A GLY 82 n 82 GLY 82 A LEU 83 n 83 LEU 83 A ASP 84 n 84 ASP 84 A SER 85 n 85 SER 85 A GLU 86 n 86 GLU 86 A GLU 87 n 87 GLU 87 A SER 88 n 88 SER 88 A TYR 89 n 89 TYR 89 A PRO 90 n 90 PRO 90 A TYR 91 n 91 TYR 91 A GLU 92 n 92 GLU 92 A ALA 93 n 93 ALA 93 A THR 94 n 94 THR 94 A GLU 95 n 95 GLU 95 A GLU 96 n 96 GLU 96 A SER 97 n 97 SER 97 A CYS 98 n 98 CYS 98 A LYS 99 n 99 LYS 99 A TYR 100 n 100 TYR 100 A ASN 101 n 101 ASN 101 A PRO 102 n 102 PRO 102 A LYS 103 n 103 LYS 103 A TYR 104 n 104 TYR 104 A SER 105 n 105 SER 105 A VAL 106 n 106 VAL 106 A ALA 107 n 107 ALA 107 A ASN 108 n 108 ASN 108 A ASP 109 n 109 ASP 109 A THR 110 n 110 THR 110 A GLY 111 n 111 GLY 111 A PHE 112 n 112 PHE 112 A VAL 113 n 113 VAL 113 A ASP 114 n 114 ASP 114 A ILE 115 n 115 ILE 115 A PRO 116 n 116 PRO 116 A LYS 117 n 117 LYS 117 A GLN 118 n 118 GLN 118 A GLU 119 n 119 GLU 119 A LYS 120 n 120 LYS 120 A ALA 121 n 121 ALA 121 A LEU 122 n 122 LEU 122 A MET 123 n 123 MET 123 A LYS 124 n 124 LYS 124 A ALA 125 n 125 ALA 125 A VAL 126 n 126 VAL 126 A ALA 127 n 127 ALA 127 A THR 128 n 128 THR 128 A VAL 129 n 129 VAL 129 A GLY 130 n 130 GLY 130 A PRO 131 n 131 PRO 131 A ILE 132 n 132 ILE 132 A SER 133 n 133 SER 133 A VAL 134 n 134 VAL 134 A ALA 135 n 135 ALA 135 A ILE 136 n 136 ILE 136 A ASP 137 n 137 ASP 137 A ALA 138 n 138 ALA 138 A GLY 139 n 139 GLY 139 A HIS 140 n 140 HIS 140 A GLU 141 n 141 GLU 141 A SER 142 n 142 SER 142 A PHE 143 n 143 PHE 143 A LEU 144 n 144 LEU 144 A PHE 145 n 145 PHE 145 A TYR 146 n 146 TYR 146 A LYS 147 n 147 LYS 147 A GLU 148 n 148 GLU 148 A GLY 149 n 149 GLY 149 A ILE 150 n 150 ILE 150 A TYR 151 n 151 TYR 151 A PHE 152 n 152 PHE 152 A GLU 153 n 153 GLU 153 A PRO 154 n 154 PRO 154 A ASP 155 n 155 ASP 155 A CYS 156 n 156 CYS 156 A SER 157 n 157 SER 157 A SER 158 n 158 SER 158 A GLU 159 n 159 GLU 159 A ASP 160 n 160 ASP 160 A MET 161 n 161 MET 161 A ASP 162 n 162 ASP 162 A HIS 163 n 163 HIS 163 A GLY 164 n 164 GLY 164 A VAL 165 n 165 VAL 165 A LEU 166 n 166 LEU 166 A VAL 167 n 167 VAL 167 A VAL 168 n 168 VAL 168 A GLY 169 n 169 GLY 169 A TYR 170 n 170 TYR 170 A GLY 171 n 171 GLY 171 A PHE 172 n 172 PHE 172 A GLU 173 n 173 GLU 173 A SER 174 n 174 SER 174 A THR 175 n 175 THR 175 A n 176 176 A SER 177 n 177 SER 177 A ASP 178 n 178 ASP 178 A ASN 179 n 179 ASN 179 A ASN 180 n 180 ASN 180 A LYS 181 n 181 LYS 181 A TYR 182 n 182 TYR 182 A TRP 183 n 183 TRP 183 A LEU 184 n 184 LEU 184 A VAL 185 n 185 VAL 185 A LYS 186 n 186 LYS 186 A ASN 187 n 187 ASN 187 A SER 188 n 188 SER 188 A TRP 189 n 189 TRP 189 A GLY 190 n 190 GLY 190 A GLU 191 n 191 GLU 191 A GLU 192 n 192 GLU 192 A TRP 193 n 193 TRP 193 A GLY 194 n 194 GLY 194 A MET 195 n 195 MET 195 A GLY 196 n 196 GLY 196 A GLY 197 n 197 GLY 197 A TYR 198 n 198 TYR 198 A VAL 199 n 199 VAL 199 A LYS 200 n 200 LYS 200 A MET 201 n 201 MET 201 A ALA 202 n 202 ALA 202 A LYS 203 n 203 LYS 203 A ASP 204 n 204 ASP 204 A ARG 205 n 205 ARG 205 A ARG 206 n 206 ARG 206 A ASN 207 n 207 ASN 207 A HIS 208 n 208 HIS 208 A CYS 209 n 209 CYS 209 A GLY 210 n 210 GLY 210 A ILE 211 n 211 ILE 211 A ALA 212 n 212 ALA 212 A SER 213 n 213 SER 213 A ALA 214 n 214 ALA 214 A ALA 215 n 215 ALA 215 A SER 216 n 216 SER 216 A TYR 217 n 217 TYR 217 A PRO 218 n 218 PRO 218 A THR 219 n 219 THR 219 A VAL 220 n 220 VAL 220 A author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 5 A N VAL 5 A O TYR 170 A O TYR 170 A N ILE 136 A N ILE 136 A O HIS 163 A O HIS 163 A N TYR 151 A N TYR 151 A O LYS 200 A O LYS 200 A N MET 201 A N MET 201 A O TRP 183 A O TRP 183 A N LYS 186 A N LYS 186 A O LEU 166 A O LEU 166 A N VAL 167 A N VAL 167 A O ILE 132 A O ILE 132 A N TYR 151 A N TYR 151 A O LYS 200 A O LYS 200 A N MET 201 A N MET 201 A O TRP 183 A O TRP 183 A N LYS 186 A N LYS 186 A O LEU 166 A O LEU 166 A N TYR 170 A N TYR 170 A O VAL 5 A O VAL 5 A O LEU 83 A O LEU 83 A N VAL 106 A N VAL 106 A N VAL 113 A N VAL 113 A O TYR 217 A O TYR 217 1 A GLU 176 A GLU 176 1 Y 1 A A O O HOH HOH 2089 2182 2.03 1 A A O O HOH HOH 2088 2089 2.09 1 A A O O HOH HOH 2089 2180 2.10 1 A A CD O GLU HOH 95 2143 2.13 B 1 A A OE1 O GLN HOH 21 2068 2.16 A 1 A A O O HOH HOH 2089 2204 2.05 1_555 3_655 1 A A O O HOH HOH 2089 2205 2.10 1_555 3_655 1 A A O O HOH HOH 2089 2286 2.15 1_555 3_655 1 A ASP 160 -112.87 77.29 1 A ASP 162 -141.91 12.10 1 A ALA 202 -30.32 127.01 1 A ALA 214 -150.77 63.49 23.290 -1.07 0.00 0.00 -0.66 0.00 1.73 0.981 0.969 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. HYDROGENS GENERATED IN REFMAC, THOSE WITH ZERO OCCUPANCY REMOVED, U VALUES REFINED INDIVIDUALLY COVALENT NITRILE BINDING TO CYS25 SG HAS TARGET BOND LENGTHS C-S 1.75, C-N 1.3 AND PLANAR GEOMETRY 0.18362 0.14546 0.14744 1.14 45.79 3627 67306 5.1 95.97 1.632 0.033 RANDOM 1 THROUGHOUT OTHER 0.036 0.038 0.80 0.80 1.20 NONE MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 1.14 45.79 287 2010 35 0 1688 0.010 0.020 1901 0.011 0.020 1254 1.431 1.965 2595 0.886 3.000 3065 5.634 5.000 244 33.830 25.111 90 12.125 15.000 307 6.714 15.000 7 0.081 0.200 255 0.007 0.020 2219 0.003 0.020 391 2.573 3.000 3155 36.677 5.000 61 17.980 5.000 3318 0.312 0.294 1.170 233 4356 20 88.49 17.63 1.14 50.00 2YJC 73833 -3.0 0.05 1 13.14 6.26 99.8 0.49 1.14 1.24 2.32 1 5.81 99.6 refinement REFMAC 5.6.0112 data reduction XDS data scaling SADABS phasing REFMAC CATHEPSIN L1 (E.C.3.4.22.15) CATHEPSIN L WITH A NITRILE INHIBITOR 1 N N 2 N N 3 N N A ARG 8 A ARG 8 HELX_P A GLY 11 A GLY 11 5 1 4 A SER 24 A SER 24 HELX_P A GLY 43 A GLY 43 1 2 20 A SER 49 A SER 49 HELX_P A SER 57 A SER 57 1 3 9 A GLY 58 A GLY 58 HELX_P A GLY 61 A GLY 61 5 4 4 A GLU 63 A GLU 63 HELX_P A CYS 65 A CYS 65 5 5 3 A LEU 69 A LEU 69 HELX_P A GLY 81 A GLY 81 1 6 13 A ASN 101 A ASN 101 HELX_P A LYS 103 A LYS 103 5 7 3 A GLN 118 A GLN 118 HELX_P A GLY 130 A GLY 130 1 8 13 A HIS 140 A HIS 140 HELX_P A PHE 145 A PHE 145 1 9 6 A ASN 207 A ASN 207 HELX_P A ILE 211 A ILE 211 5 10 5 disulf 2.024 A CYS 22 A SG CYS 22 1_555 A CYS 65 A SG CYS 65 1_555 disulf 2.064 A CYS 56 A SG CYS 56 1_555 A CYS 98 A SG CYS 98 1_555 disulf 2.078 A CYS 156 A SG CYS 156 1_555 A CYS 209 A SG CYS 209 1_555 covale 1.761 A 424 1221 B C15 424 1_555 A CYS 25 A SG CYS 25 1_555 HYDROLASE HYDROLASE, INHIBITOR, DRUG DESIGN, THIOL PROTEASE CATL1_HUMAN UNP 1 P07711 114 333 2YJC 1 220 P07711 A 1 1 220 2 2 5 5 2 2 parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A VAL 5 A VAL 5 A ASP 6 A ASP 6 A HIS 163 A HIS 163 A PHE 172 A PHE 172 A ILE 132 A ILE 132 A ILE 136 A ILE 136 A HIS 163 A HIS 163 A PHE 172 A PHE 172 A ILE 150 A ILE 150 A TYR 151 A TYR 151 A TYR 198 A TYR 198 A ALA 202 A ALA 202 A LYS 181 A LYS 181 A LYS 186 A LYS 186 A HIS 163 A HIS 163 A PHE 172 A PHE 172 A ILE 132 A ILE 132 A ILE 136 A ILE 136 A ILE 150 A ILE 150 A TYR 151 A TYR 151 A TYR 198 A TYR 198 A ALA 202 A ALA 202 A LYS 181 A LYS 181 A LYS 186 A LYS 186 A HIS 163 A HIS 163 A PHE 172 A PHE 172 A VAL 5 A VAL 5 A ASP 6 A ASP 6 A LEU 83 A LEU 83 A ASP 84 A ASP 84 A SER 105 A SER 105 A ALA 107 A ALA 107 A GLY 111 A GLY 111 A ASP 114 A ASP 114 A SER 216 A SER 216 A THR 219 A THR 219 BINDING SITE FOR RESIDUE 424 A 1221 Software 19 A GLN 19 A GLN 19 19 1_555 A GLY 23 A GLY 23 19 1_555 A SER 24 A SER 24 19 1_555 A CYS 25 A CYS 25 19 1_555 A TRP 26 A TRP 26 19 1_555 A GLY 61 A GLY 61 19 1_555 A GLY 67 A GLY 67 19 1_555 A GLY 68 A GLY 68 19 1_555 A LEU 69 A LEU 69 19 1_555 A MET 70 A MET 70 19 1_555 A ALA 135 A ALA 135 19 1_555 A MET 161 A MET 161 19 1_555 A ASP 162 A ASP 162 19 1_555 A HIS 163 A HIS 163 19 1_555 A GLY 164 A GLY 164 19 1_555 A ASP 178 A ASP 178 19 3_555 A ARG 206 A ARG 206 19 3_555 A ALA 214 A ALA 214 19 1_555 A HOH 2144 C HOH 19 1_555 19 P 21 21 21