0.013550 0.000000 0.002663 0.000000 0.028391 0.000000 0.000000 0.000000 0.016608 0.00000 0.00000 0.00000 Smith, B.J. Czabotar, P.E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 101.12 90.00 73.803 35.223 61.363 C2 H4 O 44.053 ACETYL GROUP non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking H2 N 16.023 AMINO GROUP non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N C N 2 N O N 3 N C N 4 N H N 5 N H N 6 N H N 7 N H N 8 N N N 9 S C N 10 N C N 11 N O N 12 N C N 13 N O N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N N N 22 S C N 23 N C N 24 N O N 25 N C N 26 N C N 27 N C N 28 N N N 29 N C N 30 N N N 31 N N N 32 N O N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N N N 49 S C N 50 N C N 51 N O N 52 N C N 53 N C N 54 N O N 55 N N N 56 N O N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N N N 66 S C N 67 N C N 68 N O N 69 N C N 70 N C N 71 N O N 72 N O N 73 N O N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N N N 82 R C N 83 N C N 84 N O N 85 N C N 86 N S N 87 N O N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C N 100 N C N 101 N C N 102 N O N 103 N N N 104 N O N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N N N 116 S C N 117 N C N 118 N O N 119 N C N 120 N C N 121 N C N 122 N O N 123 N O N 124 N O N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N N N 135 N C N 136 N C N 137 N O N 138 N O N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N C N 145 N O N 146 N C N 147 N O N 148 N C N 149 N O N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N N N 159 S C N 160 N C N 161 N O N 162 N C Y 163 N C Y 164 N N Y 165 N C Y 166 N C Y 167 N N N 168 N O N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N O N 180 N H N 181 N H N 182 N N N 183 S C N 184 N C N 185 N O N 186 S C N 187 N C N 188 N C N 189 N C N 190 N O N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N N N 205 S C N 206 N C N 207 N O N 208 N C N 209 N C N 210 N C N 211 N C N 212 N O N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N N N 227 S C N 228 N C N 229 N O N 230 N C N 231 N C N 232 N C N 233 N C N 234 N N N 235 N O N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C N 256 N C N 257 N S N 258 N C N 259 N O N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N N N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C Y 279 N C Y 280 N C Y 281 N C Y 282 N C Y 283 N C Y 284 N C N 285 N O N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N N N 298 S C N 299 N C N 300 N O N 301 N C N 302 N C N 303 N C N 304 N O N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N N N 315 S C N 316 N C N 317 N O N 318 N C N 319 N O N 320 N O N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N N N 329 S C N 330 N C N 331 N O N 332 R C N 333 N O N 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N N N 346 S C N 347 N C N 348 N O N 349 N C Y 350 N C Y 351 N C Y 352 N C Y 353 N N Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C Y 377 N C Y 378 N C Y 379 N C Y 380 N C Y 381 N C Y 382 N C N 383 N O N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N N N 397 S C N 398 N C N 399 N O N 400 N C N 401 N C N 402 N C N 403 N O N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N doub N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N doub N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N doub N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N doub N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N doub N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N doub N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N doub N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N doub N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N doub N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N sing Y 159 N sing Y 160 N doub Y 161 N doub N 162 N sing Y 163 N sing N 164 N sing Y 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N doub N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing Y 269 N doub Y 270 N sing Y 271 N sing N 272 N sing Y 273 N doub N 274 N sing Y 275 N doub N 276 N sing Y 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N doub N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N doub N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N doub N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N doub N 334 N sing N 335 N sing N 336 N sing N 337 N sing Y 338 N doub Y 339 N sing Y 340 N sing N 341 N sing Y 342 N doub Y 343 N sing Y 344 N sing N 345 N sing Y 346 N sing Y 347 N doub N 348 N sing Y 349 N doub N 350 N sing Y 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N doub N 362 N sing N 363 N sing N 364 N sing N 365 N sing Y 366 N doub Y 367 N sing Y 368 N sing N 369 N sing Y 370 N doub N 371 N sing Y 372 N doub N 373 N sing Y 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N doub N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing US Acs Chem.Biol. 1554-8929 8 297 10.1021/CB3005403 23151250 Stabilizing the Pro-Apoptotic Bimbh3 Helix (Bimsahb) Does not Necessarily Enhance Affinity or Biological Activity. 2013 10.2210/pdb2yq7/pdb pdb_00002yq7 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2009-08-08 ADSC QUANTUM 315r SI(111) SINGLE WAVELENGTH M x-ray 1 1.0092 1.0 MX2 Australian Synchrotron 1.0092 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 17917.959 BCL-2-LIKE PROTEIN 1 RESIDUES 1-26,83-209 1 man polymer SIDE CHAINS OF AMINO ACIDS AT POSITIONS 154 AND 158 LINKED THROUGH A LACTAM BRIDGE. 2213.471 BCL-2-LIKE PROTEIN 11 BH3 DOMAIN, RESIDUES 147-164 YES 1 syn polymer 92.094 GLYCEROL 1 syn non-polymer 18.015 water 120 nat water BCL-XL, BCL2-L-1, APOPTOSIS REGULATOR BCL-X BIM BETA 5, BCL2-L-11, BCL2-INTERACTING MEDIATOR OF CELL DEATH, BIMEL no no GPLGSMSQSNRELVVDFLSYKLSQKGYSWSQMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELF RDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQER GPLGSMSQSNRELVVDFLSYKLSQKGYSWSQMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELF RDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQER A polypeptide(L) no yes (ACE)WIAQELREIGDKFNAYYA(NH2) XWIAQELREIGDKFNAYYAX B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n HUMAN sample 9606 HOMO SAPIENS 511693 ESCHERICHIA COLI BL21 PGEX-6P3 PLASMID 1 1.92 35.98 NONE 15 % (W/V) PEG 400, 5 % PEG 3000, 10 % GLYCEROL AND 0.1 M MES PH 6.5. pdbx_database_status struct_conn struct_ref_seq_dif pdbx_unobs_or_zero_occ_atoms pdbx_validate_close_contact struct_conn chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_site repository Initial release Database references Data collection Database references Derived calculations Other Advisory Data collection Derived calculations Data collection Database references Derived calculations Refinement description 1 0 2012-11-28 1 1 2013-02-27 1 2 2019-10-23 1 3 2019-10-30 1 4 2023-12-20 _pdbx_database_status.status_code_sf _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id STRUCTURE OF BCL-XL BOUND TO BIMSAHB PDBE Y PDBE 2012-11-06 REL REL GOL GLYCEROL HOH water 9606 HUMAN HOMO SAPIENS sample 3FDL PDB ENTRY 3FDL CHAIN A PDB experimental model GOL 1197 3 GOL GOL 1197 A HOH 2001 4 HOH HOH 2001 A HOH 2002 4 HOH HOH 2002 A HOH 2003 4 HOH HOH 2003 A HOH 2004 4 HOH HOH 2004 A HOH 2005 4 HOH HOH 2005 A HOH 2006 4 HOH HOH 2006 A HOH 2007 4 HOH HOH 2007 A HOH 2008 4 HOH HOH 2008 A HOH 2009 4 HOH HOH 2009 A HOH 2010 4 HOH HOH 2010 A HOH 2011 4 HOH HOH 2011 A HOH 2012 4 HOH HOH 2012 A HOH 2013 4 HOH HOH 2013 A HOH 2014 4 HOH HOH 2014 A HOH 2015 4 HOH HOH 2015 A HOH 2016 4 HOH HOH 2016 A HOH 2017 4 HOH HOH 2017 A HOH 2018 4 HOH HOH 2018 A HOH 2019 4 HOH HOH 2019 A HOH 2020 4 HOH HOH 2020 A HOH 2021 4 HOH HOH 2021 A HOH 2022 4 HOH HOH 2022 A HOH 2023 4 HOH HOH 2023 A HOH 2024 4 HOH HOH 2024 A HOH 2025 4 HOH HOH 2025 A HOH 2026 4 HOH HOH 2026 A HOH 2027 4 HOH HOH 2027 A HOH 2028 4 HOH HOH 2028 A HOH 2029 4 HOH HOH 2029 A HOH 2030 4 HOH HOH 2030 A HOH 2031 4 HOH HOH 2031 A HOH 2032 4 HOH HOH 2032 A HOH 2033 4 HOH HOH 2033 A HOH 2034 4 HOH HOH 2034 A HOH 2035 4 HOH HOH 2035 A HOH 2036 4 HOH HOH 2036 A HOH 2037 4 HOH HOH 2037 A HOH 2038 4 HOH HOH 2038 A HOH 2039 4 HOH HOH 2039 A HOH 2040 4 HOH HOH 2040 A HOH 2041 4 HOH HOH 2041 A HOH 2042 4 HOH HOH 2042 A HOH 2043 4 HOH HOH 2043 A HOH 2044 4 HOH HOH 2044 A HOH 2045 4 HOH HOH 2045 A HOH 2046 4 HOH HOH 2046 A HOH 2047 4 HOH HOH 2047 A HOH 2048 4 HOH HOH 2048 A HOH 2049 4 HOH HOH 2049 A HOH 2050 4 HOH HOH 2050 A HOH 2051 4 HOH HOH 2051 A HOH 2052 4 HOH HOH 2052 A HOH 2053 4 HOH HOH 2053 A HOH 2054 4 HOH HOH 2054 A HOH 2055 4 HOH HOH 2055 A HOH 2056 4 HOH HOH 2056 A HOH 2057 4 HOH HOH 2057 A HOH 2058 4 HOH HOH 2058 A HOH 2059 4 HOH HOH 2059 A HOH 2060 4 HOH HOH 2060 A HOH 2061 4 HOH HOH 2061 A HOH 2062 4 HOH HOH 2062 A HOH 2063 4 HOH HOH 2063 A HOH 2064 4 HOH HOH 2064 A HOH 2065 4 HOH HOH 2065 A HOH 2066 4 HOH HOH 2066 A HOH 2067 4 HOH HOH 2067 A HOH 2068 4 HOH HOH 2068 A HOH 2069 4 HOH HOH 2069 A HOH 2070 4 HOH HOH 2070 A HOH 2071 4 HOH HOH 2071 A HOH 2072 4 HOH HOH 2072 A HOH 2073 4 HOH HOH 2073 A HOH 2074 4 HOH HOH 2074 A HOH 2075 4 HOH HOH 2075 A HOH 2076 4 HOH HOH 2076 A HOH 2077 4 HOH HOH 2077 A HOH 2078 4 HOH HOH 2078 A HOH 2079 4 HOH HOH 2079 A HOH 2080 4 HOH HOH 2080 A HOH 2081 4 HOH HOH 2081 A HOH 2082 4 HOH HOH 2082 A HOH 2083 4 HOH HOH 2083 A HOH 2084 4 HOH HOH 2084 A HOH 2085 4 HOH HOH 2085 A HOH 2086 4 HOH HOH 2086 A HOH 2087 4 HOH HOH 2087 A HOH 2088 4 HOH HOH 2088 A HOH 2089 4 HOH HOH 2089 A HOH 2090 4 HOH HOH 2090 A HOH 2091 4 HOH HOH 2091 A HOH 2092 4 HOH HOH 2092 A HOH 2093 4 HOH HOH 2093 A HOH 2094 4 HOH HOH 2094 A HOH 2095 4 HOH HOH 2095 A HOH 2096 4 HOH HOH 2096 A HOH 2097 4 HOH HOH 2097 A HOH 2098 4 HOH HOH 2098 A HOH 2099 4 HOH HOH 2099 A HOH 2100 4 HOH HOH 2100 A HOH 2101 4 HOH HOH 2101 A HOH 2102 4 HOH HOH 2102 A HOH 2103 4 HOH HOH 2103 A HOH 2104 4 HOH HOH 2104 A HOH 2105 4 HOH HOH 2105 A HOH 2106 4 HOH HOH 2106 A HOH 2107 4 HOH HOH 2107 A HOH 2001 4 HOH HOH 2001 B HOH 2002 4 HOH HOH 2002 B HOH 2003 4 HOH HOH 2003 B HOH 2004 4 HOH HOH 2004 B HOH 2005 4 HOH HOH 2005 B HOH 2006 4 HOH HOH 2006 B HOH 2007 4 HOH HOH 2007 B HOH 2008 4 HOH HOH 2008 B HOH 2009 4 HOH HOH 2009 B HOH 2010 4 HOH HOH 2010 B HOH 2011 4 HOH HOH 2011 B HOH 2012 4 HOH HOH 2012 B HOH 2013 4 HOH HOH 2013 B GLY -4 n 1 GLY -4 A PRO -3 n 2 PRO -3 A LEU -2 n 3 LEU -2 A GLY -1 n 4 GLY -1 A SER 0 n 5 SER 0 A MET 1 n 6 MET 1 A SER 2 n 7 SER 2 A GLN 3 n 8 GLN 3 A SER 4 n 9 SER 4 A ASN 5 n 10 ASN 5 A ARG 6 n 11 ARG 6 A GLU 7 n 12 GLU 7 A LEU 8 n 13 LEU 8 A VAL 9 n 14 VAL 9 A VAL 10 n 15 VAL 10 A ASP 11 n 16 ASP 11 A PHE 12 n 17 PHE 12 A LEU 13 n 18 LEU 13 A SER 14 n 19 SER 14 A TYR 15 n 20 TYR 15 A LYS 16 n 21 LYS 16 A LEU 17 n 22 LEU 17 A SER 18 n 23 SER 18 A GLN 19 n 24 GLN 19 A LYS 20 n 25 LYS 20 A GLY 21 n 26 GLY 21 A TYR 22 n 27 TYR 22 A SER 23 n 28 SER 23 A TRP 24 n 29 TRP 24 A SER 25 n 30 SER 25 A GLN 26 n 31 GLN 26 A MET 83 n 32 MET 83 A ALA 84 n 33 ALA 84 A ALA 85 n 34 ALA 85 A VAL 86 n 35 VAL 86 A LYS 87 n 36 LYS 87 A GLN 88 n 37 GLN 88 A ALA 89 n 38 ALA 89 A LEU 90 n 39 LEU 90 A ARG 91 n 40 ARG 91 A GLU 92 n 41 GLU 92 A ALA 93 n 42 ALA 93 A GLY 94 n 43 GLY 94 A ASP 95 n 44 ASP 95 A GLU 96 n 45 GLU 96 A PHE 97 n 46 PHE 97 A GLU 98 n 47 GLU 98 A LEU 99 n 48 LEU 99 A ARG 100 n 49 ARG 100 A TYR 101 n 50 TYR 101 A ARG 102 n 51 ARG 102 A ARG 103 n 52 ARG 103 A ALA 104 n 53 ALA 104 A PHE 105 n 54 PHE 105 A SER 106 n 55 SER 106 A ASP 107 n 56 ASP 107 A LEU 108 n 57 LEU 108 A THR 109 n 58 THR 109 A SER 110 n 59 SER 110 A GLN 111 n 60 GLN 111 A LEU 112 n 61 LEU 112 A HIS 113 n 62 HIS 113 A ILE 114 n 63 ILE 114 A THR 115 n 64 THR 115 A PRO 116 n 65 PRO 116 A GLY 117 n 66 GLY 117 A THR 118 n 67 THR 118 A ALA 119 n 68 ALA 119 A TYR 120 n 69 TYR 120 A GLN 121 n 70 GLN 121 A SER 122 n 71 SER 122 A PHE 123 n 72 PHE 123 A GLU 124 n 73 GLU 124 A GLN 125 n 74 GLN 125 A VAL 126 n 75 VAL 126 A VAL 127 n 76 VAL 127 A ASN 128 n 77 ASN 128 A GLU 129 n 78 GLU 129 A LEU 130 n 79 LEU 130 A PHE 131 n 80 PHE 131 A ARG 132 n 81 ARG 132 A ASP 133 n 82 ASP 133 A GLY 134 n 83 GLY 134 A VAL 135 n 84 VAL 135 A ASN 136 n 85 ASN 136 A TRP 137 n 86 TRP 137 A GLY 138 n 87 GLY 138 A ARG 139 n 88 ARG 139 A ILE 140 n 89 ILE 140 A VAL 141 n 90 VAL 141 A ALA 142 n 91 ALA 142 A PHE 143 n 92 PHE 143 A PHE 144 n 93 PHE 144 A SER 145 n 94 SER 145 A PHE 146 n 95 PHE 146 A GLY 147 n 96 GLY 147 A GLY 148 n 97 GLY 148 A ALA 149 n 98 ALA 149 A LEU 150 n 99 LEU 150 A CYS 151 n 100 CYS 151 A VAL 152 n 101 VAL 152 A GLU 153 n 102 GLU 153 A SER 154 n 103 SER 154 A VAL 155 n 104 VAL 155 A ASP 156 n 105 ASP 156 A LYS 157 n 106 LYS 157 A GLU 158 n 107 GLU 158 A MET 159 n 108 MET 159 A GLN 160 n 109 GLN 160 A VAL 161 n 110 VAL 161 A LEU 162 n 111 LEU 162 A VAL 163 n 112 VAL 163 A SER 164 n 113 SER 164 A ARG 165 n 114 ARG 165 A ILE 166 n 115 ILE 166 A ALA 167 n 116 ALA 167 A ALA 168 n 117 ALA 168 A TRP 169 n 118 TRP 169 A MET 170 n 119 MET 170 A ALA 171 n 120 ALA 171 A THR 172 n 121 THR 172 A TYR 173 n 122 TYR 173 A LEU 174 n 123 LEU 174 A ASN 175 n 124 ASN 175 A ASP 176 n 125 ASP 176 A HIS 177 n 126 HIS 177 A LEU 178 n 127 LEU 178 A GLU 179 n 128 GLU 179 A PRO 180 n 129 PRO 180 A TRP 181 n 130 TRP 181 A ILE 182 n 131 ILE 182 A GLN 183 n 132 GLN 183 A GLU 184 n 133 GLU 184 A ASN 185 n 134 ASN 185 A GLY 186 n 135 GLY 186 A GLY 187 n 136 GLY 187 A TRP 188 n 137 TRP 188 A ASP 189 n 138 ASP 189 A THR 190 n 139 THR 190 A PHE 191 n 140 PHE 191 A VAL 192 n 141 VAL 192 A GLU 193 n 142 GLU 193 A LEU 194 n 143 LEU 194 A TYR 195 n 144 TYR 195 A GLY 196 n 145 GLY 196 A n 146 197 A n 147 198 A n 148 199 A n 149 200 A n 150 201 A n 151 202 A n 152 203 A n 153 204 A n 154 205 A n 155 206 A n 156 207 A n 157 208 A n 158 209 A ACE 146 n 1 ACE 146 B TRP 147 n 2 TRP 147 B ILE 148 n 3 ILE 148 B ALA 149 n 4 ALA 149 B GLN 150 n 5 GLN 150 B GLU 151 n 6 GLU 151 B LEU 152 n 7 LEU 152 B ARG 153 n 8 ARG 153 B GLU 154 n 9 GLU 154 B ILE 155 n 10 ILE 155 B GLY 156 n 11 GLY 156 B ASP 157 n 12 ASP 157 B LYS 158 n 13 LYS 158 B PHE 159 n 14 PHE 159 B ASN 160 n 15 ASN 160 B ALA 161 n 16 ALA 161 B TYR 162 n 17 TYR 162 B TYR 163 n 18 TYR 163 B ALA 164 n 19 ALA 164 B NH2 165 n 20 NH2 165 B 1.0738 0.1548 -0.3597 0.5141 -0.1652 2.0175 -0.0364 0.1145 0.0904 -0.0311 0.0452 0.0774 -0.0039 -0.0742 -0.0023 0.1311 0.0060 -0.0070 0.0925 -0.0082 0.1526 refined -7.4778 0.2983 16.9716 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 ALL author_and_software_defined_assembly PISA 4 tetrameric 9880 -62.3 14860 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 2_556 -x,y,-z+1 crystal symmetry operation -11.8347437335 0.0000000000 60.2109343040 1 B OE2 GLU 154 B OE2 GLU 9 1 Y 1 A ASN 197 A ASN 146 1 Y 1 A ASN 198 A ASN 147 1 Y 1 A ALA 199 A ALA 148 1 Y 1 A ALA 200 A ALA 149 1 Y 1 A ALA 201 A ALA 150 1 Y 1 A GLU 202 A GLU 151 1 Y 1 A SER 203 A SER 152 1 Y 1 A ARG 204 A ARG 153 1 Y 1 A LYS 205 A LYS 154 1 Y 1 A GLY 206 A GLY 155 1 Y 1 A GLN 207 A GLN 156 1 Y 1 A GLU 208 A GLU 157 1 Y 1 A ARG 209 A ARG 158 1 Y 1 B B CD NZ GLU LYS 154 158 1.34 1 18.40 2.50 121.70 140.10 B B B C N CA ACE TRP TRP 146 147 147 Y 0.2078 0.1630 0.1653 1.901 34.068 593 12009 4.9 96.66 0.21 1 1.36 MOLECULAR REPLACEMENT 23.65 0.90 1.11 PDB ENTRY 3FDL CHAIN A ML FLAT BULK SOLVENT MODEL 1.901 34.068 120 1448 6 0 1322 0.006 1368 0.941 1849 14.888 484 0.066 189 0.004 236 0.3011 0.2105 2.0923 120 2612 89.00 0.2144 0.1587 2.3950 162 2885 99.00 0.1955 0.1688 3.0172 147 2907 99.00 0.1965 0.1524 34.0734 164 3012 100.00 23.59 1.90 50.00 2YQ7 12014 -3.0 0.10 1 20.30 6.1 96.8 0.55 1.90 2.09 2.00 1 3.3 80.1 refinement PHENIX (PHENIX.REFINE) data reduction DENZO data scaling SCALEPACK phasing PHASER Structure of Bcl-xL bound to BimLOCK 1 N N 2 N N 3 N N 4 N N 4 N N A GLY -4 A GLY 1 HELX_P A GLN 19 A GLN 24 1 1 24 A SER 25 A SER 30 HELX_P A TYR 101 A TYR 50 1 2 21 A TYR 101 A TYR 50 HELX_P A GLN 111 A GLN 60 1 3 11 A THR 115 A THR 64 HELX_P A GLY 117 A GLY 66 5 4 3 A THR 118 A THR 67 HELX_P A PHE 131 A PHE 80 1 5 14 A ASN 136 A ASN 85 HELX_P A LYS 157 A LYS 106 1 6 22 A VAL 161 A VAL 110 HELX_P A LEU 178 A LEU 127 1 7 18 A LEU 178 A LEU 127 HELX_P A ASN 185 A ASN 134 1 8 8 A GLY 186 A GLY 135 HELX_P A GLY 196 A GLY 145 1 9 11 B TRP 147 B TRP 2 HELX_P B ALA 164 B ALA 19 1 10 18 covale 1.326 both B ACE 146 B C ACE 1 1_555 B TRP 147 B N TRP 2 1_555 covale 1.329 both B ALA 164 B C ALA 19 1_555 B NH2 165 B N NH2 20 1_555 APOPTOSIS CONSTRAINED PEPTIDE, APOPTOSIS, BCL-2 FAMILY B2CL1_HUMAN UNP 1 Q07817 B2L11_HUMAN UNP 2 O43521 1 26 2YQ7 1 26 Q07817 A 1 6 31 83 209 2YQ7 83 209 Q07817 A 1 32 158 147 164 2YQ7 147 164 O43521 B 2 2 19 1 expression tag GLY -4 2YQ7 A Q07817 UNP 1 1 expression tag PRO -3 2YQ7 A Q07817 UNP 2 1 expression tag LEU -2 2YQ7 A Q07817 UNP 3 1 expression tag GLY -1 2YQ7 A Q07817 UNP 4 1 expression tag SER 0 2YQ7 A Q07817 UNP 5 3 acetylation ACE 146 2YQ7 B Q6JTU4 UNP 1 3 ARG engineered mutation GLU 154 2YQ7 B O43521 UNP 154 9 3 GLU engineered mutation LYS 158 2YQ7 B O43521 UNP 158 13 3 amidation NH2 165 2YQ7 B Q6JTU4 UNP 20 BINDING SITE FOR RESIDUE GOL A 1197 A GOL 1197 Software 6 A ASP 11 A ASP 16 6 2_556 A LYS 87 A LYS 36 6 1_555 A GLN 88 A GLN 37 6 1_555 A ARG 91 A ARG 40 6 1_555 A ARG 91 A ARG 40 6 2_556 A HOH 2019 D HOH 6 1_555 5 C 1 2 1