0.013550
0.000000
0.002663
0.000000
0.028391
0.000000
0.000000
0.000000
0.016608
0.00000
0.00000
0.00000
Smith, B.J.
Czabotar, P.E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
101.12
90.00
73.803
35.223
61.363
C2 H4 O
44.053
ACETYL GROUP
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
H2 N
16.023
AMINO GROUP
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
O
N
3
N
C
N
4
N
H
N
5
N
H
N
6
N
H
N
7
N
H
N
8
N
N
N
9
S
C
N
10
N
C
N
11
N
O
N
12
N
C
N
13
N
O
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
N
N
22
S
C
N
23
N
C
N
24
N
O
N
25
N
C
N
26
N
C
N
27
N
C
N
28
N
N
N
29
N
C
N
30
N
N
N
31
N
N
N
32
N
O
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
N
N
49
S
C
N
50
N
C
N
51
N
O
N
52
N
C
N
53
N
C
N
54
N
O
N
55
N
N
N
56
N
O
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
N
N
66
S
C
N
67
N
C
N
68
N
O
N
69
N
C
N
70
N
C
N
71
N
O
N
72
N
O
N
73
N
O
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
N
N
82
R
C
N
83
N
C
N
84
N
O
N
85
N
C
N
86
N
S
N
87
N
O
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
C
N
102
N
O
N
103
N
N
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
N
N
116
S
C
N
117
N
C
N
118
N
O
N
119
N
C
N
120
N
C
N
121
N
C
N
122
N
O
N
123
N
O
N
124
N
O
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
N
N
135
N
C
N
136
N
C
N
137
N
O
N
138
N
O
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
C
N
145
N
O
N
146
N
C
N
147
N
O
N
148
N
C
N
149
N
O
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
N
C
Y
163
N
C
Y
164
N
N
Y
165
N
C
Y
166
N
C
Y
167
N
N
N
168
N
O
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
N
N
183
S
C
N
184
N
C
N
185
N
O
N
186
S
C
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
O
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
N
N
205
S
C
N
206
N
C
N
207
N
O
N
208
N
C
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
O
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
N
N
227
S
C
N
228
N
C
N
229
N
O
N
230
N
C
N
231
N
C
N
232
N
C
N
233
N
C
N
234
N
N
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
S
N
258
N
C
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
N
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
Y
279
N
C
Y
280
N
C
Y
281
N
C
Y
282
N
C
Y
283
N
C
Y
284
N
C
N
285
N
O
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
N
N
298
S
C
N
299
N
C
N
300
N
O
N
301
N
C
N
302
N
C
N
303
N
C
N
304
N
O
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
N
C
N
319
N
O
N
320
N
O
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
R
C
N
333
N
O
N
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
N
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
N
383
N
O
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
N
N
397
S
C
N
398
N
C
N
399
N
O
N
400
N
C
N
401
N
C
N
402
N
C
N
403
N
O
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
doub
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
doub
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
doub
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
Y
159
N
sing
Y
160
N
doub
Y
161
N
doub
N
162
N
sing
Y
163
N
sing
N
164
N
sing
Y
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
doub
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
Y
269
N
doub
Y
270
N
sing
Y
271
N
sing
N
272
N
sing
Y
273
N
doub
N
274
N
sing
Y
275
N
doub
N
276
N
sing
Y
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
Y
338
N
doub
Y
339
N
sing
Y
340
N
sing
N
341
N
sing
Y
342
N
doub
Y
343
N
sing
Y
344
N
sing
N
345
N
sing
Y
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
Y
366
N
doub
Y
367
N
sing
Y
368
N
sing
N
369
N
sing
Y
370
N
doub
N
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
US
Acs Chem.Biol.
1554-8929
8
297
10.1021/CB3005403
23151250
Stabilizing the Pro-Apoptotic Bimbh3 Helix (Bimsahb) Does not Necessarily Enhance Affinity or Biological Activity.
2013
10.2210/pdb2yq7/pdb
pdb_00002yq7
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2009-08-08
ADSC QUANTUM 315r
SI(111)
SINGLE WAVELENGTH
M
x-ray
1
1.0092
1.0
MX2
Australian Synchrotron
1.0092
SYNCHROTRON
AUSTRALIAN SYNCHROTRON BEAMLINE MX2
17917.959
BCL-2-LIKE PROTEIN 1
RESIDUES 1-26,83-209
1
man
polymer
SIDE CHAINS OF AMINO ACIDS AT POSITIONS 154 AND 158 LINKED THROUGH A LACTAM BRIDGE.
2213.471
BCL-2-LIKE PROTEIN 11
BH3 DOMAIN, RESIDUES 147-164
YES
1
syn
polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
120
nat
water
BCL-XL, BCL2-L-1, APOPTOSIS REGULATOR BCL-X
BIM BETA 5, BCL2-L-11, BCL2-INTERACTING MEDIATOR OF CELL DEATH, BIMEL
no
no
GPLGSMSQSNRELVVDFLSYKLSQKGYSWSQMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELF
RDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQER
GPLGSMSQSNRELVVDFLSYKLSQKGYSWSQMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELF
RDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQER
A
polypeptide(L)
no
yes
(ACE)WIAQELREIGDKFNAYYA(NH2)
XWIAQELREIGDKFNAYYAX
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
9606
HOMO SAPIENS
511693
ESCHERICHIA COLI
BL21
PGEX-6P3
PLASMID
1
1.92
35.98
NONE
15 % (W/V) PEG 400, 5 % PEG 3000, 10 % GLYCEROL AND 0.1 M MES PH 6.5.
pdbx_database_status
struct_conn
struct_ref_seq_dif
pdbx_unobs_or_zero_occ_atoms
pdbx_validate_close_contact
struct_conn
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Other
Advisory
Data collection
Derived calculations
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-11-28
1
1
2013-02-27
1
2
2019-10-23
1
3
2019-10-30
1
4
2023-12-20
_pdbx_database_status.status_code_sf
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
STRUCTURE OF BCL-XL BOUND TO BIMSAHB
PDBE
Y
PDBE
2012-11-06
REL
REL
GOL
GLYCEROL
HOH
water
9606
HUMAN
HOMO SAPIENS
sample
3FDL
PDB ENTRY 3FDL CHAIN A
PDB
experimental model
GOL
1197
3
GOL
GOL
1197
A
HOH
2001
4
HOH
HOH
2001
A
HOH
2002
4
HOH
HOH
2002
A
HOH
2003
4
HOH
HOH
2003
A
HOH
2004
4
HOH
HOH
2004
A
HOH
2005
4
HOH
HOH
2005
A
HOH
2006
4
HOH
HOH
2006
A
HOH
2007
4
HOH
HOH
2007
A
HOH
2008
4
HOH
HOH
2008
A
HOH
2009
4
HOH
HOH
2009
A
HOH
2010
4
HOH
HOH
2010
A
HOH
2011
4
HOH
HOH
2011
A
HOH
2012
4
HOH
HOH
2012
A
HOH
2013
4
HOH
HOH
2013
A
HOH
2014
4
HOH
HOH
2014
A
HOH
2015
4
HOH
HOH
2015
A
HOH
2016
4
HOH
HOH
2016
A
HOH
2017
4
HOH
HOH
2017
A
HOH
2018
4
HOH
HOH
2018
A
HOH
2019
4
HOH
HOH
2019
A
HOH
2020
4
HOH
HOH
2020
A
HOH
2021
4
HOH
HOH
2021
A
HOH
2022
4
HOH
HOH
2022
A
HOH
2023
4
HOH
HOH
2023
A
HOH
2024
4
HOH
HOH
2024
A
HOH
2025
4
HOH
HOH
2025
A
HOH
2026
4
HOH
HOH
2026
A
HOH
2027
4
HOH
HOH
2027
A
HOH
2028
4
HOH
HOH
2028
A
HOH
2029
4
HOH
HOH
2029
A
HOH
2030
4
HOH
HOH
2030
A
HOH
2031
4
HOH
HOH
2031
A
HOH
2032
4
HOH
HOH
2032
A
HOH
2033
4
HOH
HOH
2033
A
HOH
2034
4
HOH
HOH
2034
A
HOH
2035
4
HOH
HOH
2035
A
HOH
2036
4
HOH
HOH
2036
A
HOH
2037
4
HOH
HOH
2037
A
HOH
2038
4
HOH
HOH
2038
A
HOH
2039
4
HOH
HOH
2039
A
HOH
2040
4
HOH
HOH
2040
A
HOH
2041
4
HOH
HOH
2041
A
HOH
2042
4
HOH
HOH
2042
A
HOH
2043
4
HOH
HOH
2043
A
HOH
2044
4
HOH
HOH
2044
A
HOH
2045
4
HOH
HOH
2045
A
HOH
2046
4
HOH
HOH
2046
A
HOH
2047
4
HOH
HOH
2047
A
HOH
2048
4
HOH
HOH
2048
A
HOH
2049
4
HOH
HOH
2049
A
HOH
2050
4
HOH
HOH
2050
A
HOH
2051
4
HOH
HOH
2051
A
HOH
2052
4
HOH
HOH
2052
A
HOH
2053
4
HOH
HOH
2053
A
HOH
2054
4
HOH
HOH
2054
A
HOH
2055
4
HOH
HOH
2055
A
HOH
2056
4
HOH
HOH
2056
A
HOH
2057
4
HOH
HOH
2057
A
HOH
2058
4
HOH
HOH
2058
A
HOH
2059
4
HOH
HOH
2059
A
HOH
2060
4
HOH
HOH
2060
A
HOH
2061
4
HOH
HOH
2061
A
HOH
2062
4
HOH
HOH
2062
A
HOH
2063
4
HOH
HOH
2063
A
HOH
2064
4
HOH
HOH
2064
A
HOH
2065
4
HOH
HOH
2065
A
HOH
2066
4
HOH
HOH
2066
A
HOH
2067
4
HOH
HOH
2067
A
HOH
2068
4
HOH
HOH
2068
A
HOH
2069
4
HOH
HOH
2069
A
HOH
2070
4
HOH
HOH
2070
A
HOH
2071
4
HOH
HOH
2071
A
HOH
2072
4
HOH
HOH
2072
A
HOH
2073
4
HOH
HOH
2073
A
HOH
2074
4
HOH
HOH
2074
A
HOH
2075
4
HOH
HOH
2075
A
HOH
2076
4
HOH
HOH
2076
A
HOH
2077
4
HOH
HOH
2077
A
HOH
2078
4
HOH
HOH
2078
A
HOH
2079
4
HOH
HOH
2079
A
HOH
2080
4
HOH
HOH
2080
A
HOH
2081
4
HOH
HOH
2081
A
HOH
2082
4
HOH
HOH
2082
A
HOH
2083
4
HOH
HOH
2083
A
HOH
2084
4
HOH
HOH
2084
A
HOH
2085
4
HOH
HOH
2085
A
HOH
2086
4
HOH
HOH
2086
A
HOH
2087
4
HOH
HOH
2087
A
HOH
2088
4
HOH
HOH
2088
A
HOH
2089
4
HOH
HOH
2089
A
HOH
2090
4
HOH
HOH
2090
A
HOH
2091
4
HOH
HOH
2091
A
HOH
2092
4
HOH
HOH
2092
A
HOH
2093
4
HOH
HOH
2093
A
HOH
2094
4
HOH
HOH
2094
A
HOH
2095
4
HOH
HOH
2095
A
HOH
2096
4
HOH
HOH
2096
A
HOH
2097
4
HOH
HOH
2097
A
HOH
2098
4
HOH
HOH
2098
A
HOH
2099
4
HOH
HOH
2099
A
HOH
2100
4
HOH
HOH
2100
A
HOH
2101
4
HOH
HOH
2101
A
HOH
2102
4
HOH
HOH
2102
A
HOH
2103
4
HOH
HOH
2103
A
HOH
2104
4
HOH
HOH
2104
A
HOH
2105
4
HOH
HOH
2105
A
HOH
2106
4
HOH
HOH
2106
A
HOH
2107
4
HOH
HOH
2107
A
HOH
2001
4
HOH
HOH
2001
B
HOH
2002
4
HOH
HOH
2002
B
HOH
2003
4
HOH
HOH
2003
B
HOH
2004
4
HOH
HOH
2004
B
HOH
2005
4
HOH
HOH
2005
B
HOH
2006
4
HOH
HOH
2006
B
HOH
2007
4
HOH
HOH
2007
B
HOH
2008
4
HOH
HOH
2008
B
HOH
2009
4
HOH
HOH
2009
B
HOH
2010
4
HOH
HOH
2010
B
HOH
2011
4
HOH
HOH
2011
B
HOH
2012
4
HOH
HOH
2012
B
HOH
2013
4
HOH
HOH
2013
B
GLY
-4
n
1
GLY
-4
A
PRO
-3
n
2
PRO
-3
A
LEU
-2
n
3
LEU
-2
A
GLY
-1
n
4
GLY
-1
A
SER
0
n
5
SER
0
A
MET
1
n
6
MET
1
A
SER
2
n
7
SER
2
A
GLN
3
n
8
GLN
3
A
SER
4
n
9
SER
4
A
ASN
5
n
10
ASN
5
A
ARG
6
n
11
ARG
6
A
GLU
7
n
12
GLU
7
A
LEU
8
n
13
LEU
8
A
VAL
9
n
14
VAL
9
A
VAL
10
n
15
VAL
10
A
ASP
11
n
16
ASP
11
A
PHE
12
n
17
PHE
12
A
LEU
13
n
18
LEU
13
A
SER
14
n
19
SER
14
A
TYR
15
n
20
TYR
15
A
LYS
16
n
21
LYS
16
A
LEU
17
n
22
LEU
17
A
SER
18
n
23
SER
18
A
GLN
19
n
24
GLN
19
A
LYS
20
n
25
LYS
20
A
GLY
21
n
26
GLY
21
A
TYR
22
n
27
TYR
22
A
SER
23
n
28
SER
23
A
TRP
24
n
29
TRP
24
A
SER
25
n
30
SER
25
A
GLN
26
n
31
GLN
26
A
MET
83
n
32
MET
83
A
ALA
84
n
33
ALA
84
A
ALA
85
n
34
ALA
85
A
VAL
86
n
35
VAL
86
A
LYS
87
n
36
LYS
87
A
GLN
88
n
37
GLN
88
A
ALA
89
n
38
ALA
89
A
LEU
90
n
39
LEU
90
A
ARG
91
n
40
ARG
91
A
GLU
92
n
41
GLU
92
A
ALA
93
n
42
ALA
93
A
GLY
94
n
43
GLY
94
A
ASP
95
n
44
ASP
95
A
GLU
96
n
45
GLU
96
A
PHE
97
n
46
PHE
97
A
GLU
98
n
47
GLU
98
A
LEU
99
n
48
LEU
99
A
ARG
100
n
49
ARG
100
A
TYR
101
n
50
TYR
101
A
ARG
102
n
51
ARG
102
A
ARG
103
n
52
ARG
103
A
ALA
104
n
53
ALA
104
A
PHE
105
n
54
PHE
105
A
SER
106
n
55
SER
106
A
ASP
107
n
56
ASP
107
A
LEU
108
n
57
LEU
108
A
THR
109
n
58
THR
109
A
SER
110
n
59
SER
110
A
GLN
111
n
60
GLN
111
A
LEU
112
n
61
LEU
112
A
HIS
113
n
62
HIS
113
A
ILE
114
n
63
ILE
114
A
THR
115
n
64
THR
115
A
PRO
116
n
65
PRO
116
A
GLY
117
n
66
GLY
117
A
THR
118
n
67
THR
118
A
ALA
119
n
68
ALA
119
A
TYR
120
n
69
TYR
120
A
GLN
121
n
70
GLN
121
A
SER
122
n
71
SER
122
A
PHE
123
n
72
PHE
123
A
GLU
124
n
73
GLU
124
A
GLN
125
n
74
GLN
125
A
VAL
126
n
75
VAL
126
A
VAL
127
n
76
VAL
127
A
ASN
128
n
77
ASN
128
A
GLU
129
n
78
GLU
129
A
LEU
130
n
79
LEU
130
A
PHE
131
n
80
PHE
131
A
ARG
132
n
81
ARG
132
A
ASP
133
n
82
ASP
133
A
GLY
134
n
83
GLY
134
A
VAL
135
n
84
VAL
135
A
ASN
136
n
85
ASN
136
A
TRP
137
n
86
TRP
137
A
GLY
138
n
87
GLY
138
A
ARG
139
n
88
ARG
139
A
ILE
140
n
89
ILE
140
A
VAL
141
n
90
VAL
141
A
ALA
142
n
91
ALA
142
A
PHE
143
n
92
PHE
143
A
PHE
144
n
93
PHE
144
A
SER
145
n
94
SER
145
A
PHE
146
n
95
PHE
146
A
GLY
147
n
96
GLY
147
A
GLY
148
n
97
GLY
148
A
ALA
149
n
98
ALA
149
A
LEU
150
n
99
LEU
150
A
CYS
151
n
100
CYS
151
A
VAL
152
n
101
VAL
152
A
GLU
153
n
102
GLU
153
A
SER
154
n
103
SER
154
A
VAL
155
n
104
VAL
155
A
ASP
156
n
105
ASP
156
A
LYS
157
n
106
LYS
157
A
GLU
158
n
107
GLU
158
A
MET
159
n
108
MET
159
A
GLN
160
n
109
GLN
160
A
VAL
161
n
110
VAL
161
A
LEU
162
n
111
LEU
162
A
VAL
163
n
112
VAL
163
A
SER
164
n
113
SER
164
A
ARG
165
n
114
ARG
165
A
ILE
166
n
115
ILE
166
A
ALA
167
n
116
ALA
167
A
ALA
168
n
117
ALA
168
A
TRP
169
n
118
TRP
169
A
MET
170
n
119
MET
170
A
ALA
171
n
120
ALA
171
A
THR
172
n
121
THR
172
A
TYR
173
n
122
TYR
173
A
LEU
174
n
123
LEU
174
A
ASN
175
n
124
ASN
175
A
ASP
176
n
125
ASP
176
A
HIS
177
n
126
HIS
177
A
LEU
178
n
127
LEU
178
A
GLU
179
n
128
GLU
179
A
PRO
180
n
129
PRO
180
A
TRP
181
n
130
TRP
181
A
ILE
182
n
131
ILE
182
A
GLN
183
n
132
GLN
183
A
GLU
184
n
133
GLU
184
A
ASN
185
n
134
ASN
185
A
GLY
186
n
135
GLY
186
A
GLY
187
n
136
GLY
187
A
TRP
188
n
137
TRP
188
A
ASP
189
n
138
ASP
189
A
THR
190
n
139
THR
190
A
PHE
191
n
140
PHE
191
A
VAL
192
n
141
VAL
192
A
GLU
193
n
142
GLU
193
A
LEU
194
n
143
LEU
194
A
TYR
195
n
144
TYR
195
A
GLY
196
n
145
GLY
196
A
n
146
197
A
n
147
198
A
n
148
199
A
n
149
200
A
n
150
201
A
n
151
202
A
n
152
203
A
n
153
204
A
n
154
205
A
n
155
206
A
n
156
207
A
n
157
208
A
n
158
209
A
ACE
146
n
1
ACE
146
B
TRP
147
n
2
TRP
147
B
ILE
148
n
3
ILE
148
B
ALA
149
n
4
ALA
149
B
GLN
150
n
5
GLN
150
B
GLU
151
n
6
GLU
151
B
LEU
152
n
7
LEU
152
B
ARG
153
n
8
ARG
153
B
GLU
154
n
9
GLU
154
B
ILE
155
n
10
ILE
155
B
GLY
156
n
11
GLY
156
B
ASP
157
n
12
ASP
157
B
LYS
158
n
13
LYS
158
B
PHE
159
n
14
PHE
159
B
ASN
160
n
15
ASN
160
B
ALA
161
n
16
ALA
161
B
TYR
162
n
17
TYR
162
B
TYR
163
n
18
TYR
163
B
ALA
164
n
19
ALA
164
B
NH2
165
n
20
NH2
165
B
1.0738
0.1548
-0.3597
0.5141
-0.1652
2.0175
-0.0364
0.1145
0.0904
-0.0311
0.0452
0.0774
-0.0039
-0.0742
-0.0023
0.1311
0.0060
-0.0070
0.0925
-0.0082
0.1526
refined
-7.4778
0.2983
16.9716
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
ALL
author_and_software_defined_assembly
PISA
4
tetrameric
9880
-62.3
14860
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_556
-x,y,-z+1
crystal symmetry operation
-11.8347437335
0.0000000000
60.2109343040
1
B
OE2
GLU
154
B
OE2
GLU
9
1
Y
1
A
ASN
197
A
ASN
146
1
Y
1
A
ASN
198
A
ASN
147
1
Y
1
A
ALA
199
A
ALA
148
1
Y
1
A
ALA
200
A
ALA
149
1
Y
1
A
ALA
201
A
ALA
150
1
Y
1
A
GLU
202
A
GLU
151
1
Y
1
A
SER
203
A
SER
152
1
Y
1
A
ARG
204
A
ARG
153
1
Y
1
A
LYS
205
A
LYS
154
1
Y
1
A
GLY
206
A
GLY
155
1
Y
1
A
GLN
207
A
GLN
156
1
Y
1
A
GLU
208
A
GLU
157
1
Y
1
A
ARG
209
A
ARG
158
1
Y
1
B
B
CD
NZ
GLU
LYS
154
158
1.34
1
18.40
2.50
121.70
140.10
B
B
B
C
N
CA
ACE
TRP
TRP
146
147
147
Y
0.2078
0.1630
0.1653
1.901
34.068
593
12009
4.9
96.66
0.21
1
1.36
MOLECULAR REPLACEMENT
23.65
0.90
1.11
PDB ENTRY 3FDL CHAIN A
ML
FLAT BULK SOLVENT MODEL
1.901
34.068
120
1448
6
0
1322
0.006
1368
0.941
1849
14.888
484
0.066
189
0.004
236
0.3011
0.2105
2.0923
120
2612
89.00
0.2144
0.1587
2.3950
162
2885
99.00
0.1955
0.1688
3.0172
147
2907
99.00
0.1965
0.1524
34.0734
164
3012
100.00
23.59
1.90
50.00
2YQ7
12014
-3.0
0.10
1
20.30
6.1
96.8
0.55
1.90
2.09
2.00
1
3.3
80.1
refinement
PHENIX
(PHENIX.REFINE)
data reduction
DENZO
data scaling
SCALEPACK
phasing
PHASER
Structure of Bcl-xL bound to BimLOCK
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
GLY
-4
A
GLY
1
HELX_P
A
GLN
19
A
GLN
24
1
1
24
A
SER
25
A
SER
30
HELX_P
A
TYR
101
A
TYR
50
1
2
21
A
TYR
101
A
TYR
50
HELX_P
A
GLN
111
A
GLN
60
1
3
11
A
THR
115
A
THR
64
HELX_P
A
GLY
117
A
GLY
66
5
4
3
A
THR
118
A
THR
67
HELX_P
A
PHE
131
A
PHE
80
1
5
14
A
ASN
136
A
ASN
85
HELX_P
A
LYS
157
A
LYS
106
1
6
22
A
VAL
161
A
VAL
110
HELX_P
A
LEU
178
A
LEU
127
1
7
18
A
LEU
178
A
LEU
127
HELX_P
A
ASN
185
A
ASN
134
1
8
8
A
GLY
186
A
GLY
135
HELX_P
A
GLY
196
A
GLY
145
1
9
11
B
TRP
147
B
TRP
2
HELX_P
B
ALA
164
B
ALA
19
1
10
18
covale
1.326
both
B
ACE
146
B
C
ACE
1
1_555
B
TRP
147
B
N
TRP
2
1_555
covale
1.329
both
B
ALA
164
B
C
ALA
19
1_555
B
NH2
165
B
N
NH2
20
1_555
APOPTOSIS
CONSTRAINED PEPTIDE, APOPTOSIS, BCL-2 FAMILY
B2CL1_HUMAN
UNP
1
Q07817
B2L11_HUMAN
UNP
2
O43521
1
26
2YQ7
1
26
Q07817
A
1
6
31
83
209
2YQ7
83
209
Q07817
A
1
32
158
147
164
2YQ7
147
164
O43521
B
2
2
19
1
expression tag
GLY
-4
2YQ7
A
Q07817
UNP
1
1
expression tag
PRO
-3
2YQ7
A
Q07817
UNP
2
1
expression tag
LEU
-2
2YQ7
A
Q07817
UNP
3
1
expression tag
GLY
-1
2YQ7
A
Q07817
UNP
4
1
expression tag
SER
0
2YQ7
A
Q07817
UNP
5
3
acetylation
ACE
146
2YQ7
B
Q6JTU4
UNP
1
3
ARG
engineered mutation
GLU
154
2YQ7
B
O43521
UNP
154
9
3
GLU
engineered mutation
LYS
158
2YQ7
B
O43521
UNP
158
13
3
amidation
NH2
165
2YQ7
B
Q6JTU4
UNP
20
BINDING SITE FOR RESIDUE GOL A 1197
A
GOL
1197
Software
6
A
ASP
11
A
ASP
16
6
2_556
A
LYS
87
A
LYS
36
6
1_555
A
GLN
88
A
GLN
37
6
1_555
A
ARG
91
A
ARG
40
6
1_555
A
ARG
91
A
ARG
40
6
2_556
A
HOH
2019
D
HOH
6
1_555
5
C 1 2 1