1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Qin, X.R. Hayashi, F. Yokoyama, S. RIKEN Structural Genomics/Proteomics Initiative (RSGI) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 Solution structure of the PKD domain from KIAA 1837 protein 10.2210/pdb2yrl/pdb pdb_00002yrl 10585.358 KIAA1837 protein PKD domain 1 man polymer no no GSSGSSGQADAGPDKELTLPVDSTTLDGSKSSDDQKIISYLWEKTQGPDGVQLENANSSVATVTGLQVGTYVFTLTVKDE RNLQSQSSVNVIVKEESGPSSG GSSGSSGQADAGPDKELTLPVDSTTLDGSKSSDDQKIISYLWEKTQGPDGVQLENANSSVATVTGLQVGTYVFTLTVKDE RNLQSQSSVNVIVKEESGPSSG A hsk002301805.1 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample cell-free protein synthesis KIAA1837 9606 Homo sapiens plasmid P051025-02 RIKEN Structural Genomics/Proteomics Initiative RSGI NPPSFA, National Project on Protein Structural and Functional Analyses database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Data collection Database references Derived calculations 1 0 2007-10-02 1 1 2011-07-13 1 2 2022-03-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_ref_seq_dif.details Y PDBJ Y PDBJ 2007-04-02 REL REL spectrometer_id 1 for 3D_15N_separated_NOESY; spectrometer_id 2 for 3D_13C_separated_NOESY structures with the least restraint violations, structures with the lowest energy, target function 100 20 3D_15N-separated_NOESY 3D_13C-separated_NOESY 120mM 7.0 ambient 298 K torsion angle dynamics 1 lowest energy 1.13mM 13C, 15N-labeled protein; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O 90% H2O/10% D2O Varian collection VNMR 6.1C Delaglio, F. processing NMRPipe 20030801 Johnson, B.A. data analysis NMRView 5.0.4 Kobayashi, N. data analysis KUJIRA 0.9820 Guntert, P. structure solution CYANA 2.0.17 Guntert, P. refinement CYANA 2.0.17 800 Varian INOVA 900 Varian INOVA GLY 1 n 1 GLY 1 A SER 2 n 2 SER 2 A SER 3 n 3 SER 3 A GLY 4 n 4 GLY 4 A SER 5 n 5 SER 5 A SER 6 n 6 SER 6 A GLY 7 n 7 GLY 7 A GLN 8 n 8 GLN 8 A ALA 9 n 9 ALA 9 A ASP 10 n 10 ASP 10 A ALA 11 n 11 ALA 11 A GLY 12 n 12 GLY 12 A PRO 13 n 13 PRO 13 A ASP 14 n 14 ASP 14 A LYS 15 n 15 LYS 15 A GLU 16 n 16 GLU 16 A LEU 17 n 17 LEU 17 A THR 18 n 18 THR 18 A LEU 19 n 19 LEU 19 A PRO 20 n 20 PRO 20 A VAL 21 n 21 VAL 21 A ASP 22 n 22 ASP 22 A SER 23 n 23 SER 23 A THR 24 n 24 THR 24 A THR 25 n 25 THR 25 A LEU 26 n 26 LEU 26 A ASP 27 n 27 ASP 27 A GLY 28 n 28 GLY 28 A SER 29 n 29 SER 29 A LYS 30 n 30 LYS 30 A SER 31 n 31 SER 31 A SER 32 n 32 SER 32 A ASP 33 n 33 ASP 33 A ASP 34 n 34 ASP 34 A GLN 35 n 35 GLN 35 A LYS 36 n 36 LYS 36 A ILE 37 n 37 ILE 37 A ILE 38 n 38 ILE 38 A SER 39 n 39 SER 39 A TYR 40 n 40 TYR 40 A LEU 41 n 41 LEU 41 A TRP 42 n 42 TRP 42 A GLU 43 n 43 GLU 43 A LYS 44 n 44 LYS 44 A THR 45 n 45 THR 45 A GLN 46 n 46 GLN 46 A GLY 47 n 47 GLY 47 A PRO 48 n 48 PRO 48 A ASP 49 n 49 ASP 49 A GLY 50 n 50 GLY 50 A VAL 51 n 51 VAL 51 A GLN 52 n 52 GLN 52 A LEU 53 n 53 LEU 53 A GLU 54 n 54 GLU 54 A ASN 55 n 55 ASN 55 A ALA 56 n 56 ALA 56 A ASN 57 n 57 ASN 57 A SER 58 n 58 SER 58 A SER 59 n 59 SER 59 A VAL 60 n 60 VAL 60 A ALA 61 n 61 ALA 61 A THR 62 n 62 THR 62 A VAL 63 n 63 VAL 63 A THR 64 n 64 THR 64 A GLY 65 n 65 GLY 65 A LEU 66 n 66 LEU 66 A GLN 67 n 67 GLN 67 A VAL 68 n 68 VAL 68 A GLY 69 n 69 GLY 69 A THR 70 n 70 THR 70 A TYR 71 n 71 TYR 71 A VAL 72 n 72 VAL 72 A PHE 73 n 73 PHE 73 A THR 74 n 74 THR 74 A LEU 75 n 75 LEU 75 A THR 76 n 76 THR 76 A VAL 77 n 77 VAL 77 A LYS 78 n 78 LYS 78 A ASP 79 n 79 ASP 79 A GLU 80 n 80 GLU 80 A ARG 81 n 81 ARG 81 A ASN 82 n 82 ASN 82 A LEU 83 n 83 LEU 83 A GLN 84 n 84 GLN 84 A SER 85 n 85 SER 85 A GLN 86 n 86 GLN 86 A SER 87 n 87 SER 87 A SER 88 n 88 SER 88 A VAL 89 n 89 VAL 89 A ASN 90 n 90 ASN 90 A VAL 91 n 91 VAL 91 A ILE 92 n 92 ILE 92 A VAL 93 n 93 VAL 93 A LYS 94 n 94 LYS 94 A GLU 95 n 95 GLU 95 A GLU 96 n 96 GLU 96 A SER 97 n 97 SER 97 A GLY 98 n 98 GLY 98 A PRO 99 n 99 PRO 99 A SER 100 n 100 SER 100 A SER 101 n 101 SER 101 A GLY 102 n 102 GLY 102 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 17 A N LEU 17 A O LYS 94 A O LYS 94 A O SER 87 A O SER 87 A N LEU 75 A N LEU 75 A O VAL 72 A O VAL 72 A N THR 45 A N THR 45 A N LEU 26 A N LEU 26 A O ALA 61 A O ALA 61 A O THR 64 A O THR 64 A N GLN 52 A N GLN 52 1 A ALA 11 -85.66 33.69 1 A PRO 13 -69.74 -175.66 1 A LEU 19 -38.37 158.62 1 A VAL 21 -53.21 88.44 1 A ASP 22 -104.69 43.79 1 A LYS 30 -93.02 55.58 1 A VAL 51 -42.76 156.51 1 A ASN 57 -87.24 34.08 1 A VAL 68 -55.00 94.87 1 A ARG 81 -89.74 32.33 1 A ASN 82 39.17 35.73 1 A SER 97 -39.38 146.36 2 A SER 2 -57.56 107.26 2 A SER 5 -61.33 96.45 2 A ALA 11 -88.02 31.61 2 A PRO 13 -69.71 -178.54 2 A LEU 19 -44.88 158.33 2 A VAL 51 -45.35 167.91 2 A ASN 57 -87.75 31.89 2 A VAL 68 -48.49 101.55 3 A GLN 8 -124.21 -65.70 3 A LEU 19 -39.18 159.10 3 A VAL 21 -49.94 93.44 3 A ASP 22 -107.99 40.59 3 A LYS 30 -107.66 45.72 3 A SER 31 -54.82 -175.07 3 A ASP 34 34.61 35.54 3 A VAL 68 -42.19 109.74 3 A SER 100 -67.84 82.94 4 A GLN 8 -106.87 43.05 4 A LEU 19 -38.18 158.32 4 A VAL 21 -51.20 99.14 4 A LYS 30 -39.96 -25.42 4 A VAL 51 -41.73 160.97 4 A ASN 57 -87.18 35.13 4 A ARG 81 -88.32 31.18 4 A GLU 96 -49.77 100.99 5 A ASP 14 -36.83 138.13 5 A LEU 19 -40.64 159.12 5 A VAL 21 -49.51 87.75 5 A ASP 22 -105.08 44.01 5 A VAL 51 -48.08 164.20 5 A VAL 68 -37.95 99.60 5 A ASN 82 45.78 25.84 6 A ALA 11 -37.58 -35.27 6 A LEU 19 -44.65 158.22 6 A VAL 21 -50.05 93.18 6 A SER 29 -38.17 -34.41 6 A GLN 35 -101.21 43.30 6 A ASN 57 -87.07 34.27 6 A VAL 68 -53.63 95.38 6 A GLU 96 -52.09 177.11 6 A SER 97 -38.95 117.16 7 A ASP 14 -39.11 150.37 7 A LEU 19 -38.72 157.46 7 A VAL 21 -50.29 92.41 7 A LYS 30 -76.78 47.76 7 A SER 31 -94.69 49.23 7 A VAL 51 -44.55 158.78 7 A VAL 68 -34.20 120.23 7 A ASN 82 41.67 29.95 7 A SER 97 -117.08 78.04 8 A ASP 14 -39.45 149.60 8 A LEU 19 -37.74 156.23 8 A VAL 21 -56.87 86.75 8 A SER 32 -36.48 130.18 8 A VAL 51 -44.41 166.15 8 A SER 59 -37.97 -29.21 8 A VAL 68 -39.00 111.92 8 A ASN 82 44.34 27.01 8 A SER 101 -124.70 -50.48 9 A ALA 11 -99.52 33.56 9 A PRO 13 -69.76 -178.21 9 A LEU 19 -39.16 156.18 9 A VAL 21 -55.62 90.40 9 A SER 29 -76.11 48.76 9 A SER 32 -36.11 108.39 9 A VAL 68 -43.98 107.36 10 A LEU 19 -44.72 157.93 10 A VAL 21 -47.35 97.74 10 A LYS 30 -91.87 47.45 10 A GLN 35 -58.20 171.85 10 A VAL 68 -43.91 100.85 10 A GLN 86 -171.27 144.92 10 A PRO 99 -69.85 88.65 10 A SER 101 -93.13 -61.13 11 A SER 2 -169.09 116.99 11 A ALA 11 -86.77 41.09 11 A LEU 19 -38.94 156.02 11 A VAL 21 -52.13 102.38 11 A ASN 57 -84.56 32.10 11 A VAL 68 -39.17 105.61 11 A ASN 82 43.84 28.59 11 A SER 101 -36.97 130.46 12 A ALA 11 -36.99 -34.30 12 A LEU 19 -42.40 158.47 12 A VAL 21 -49.84 91.05 12 A ASP 22 -108.05 43.03 12 A LYS 30 -80.39 48.76 12 A SER 31 -96.34 44.31 12 A SER 32 -174.90 146.26 12 A VAL 68 -43.81 99.62 12 A SER 87 -161.99 116.60 12 A GLU 96 -39.41 148.76 12 A SER 100 -121.96 -55.80 13 A GLN 8 -97.50 50.40 13 A ALA 9 -171.25 118.32 13 A ALA 11 -98.62 35.62 13 A PRO 13 -69.71 -174.08 13 A LEU 19 -40.79 159.14 13 A VAL 21 -54.34 95.90 13 A LYS 30 -83.45 47.13 13 A ASP 34 -39.88 158.59 13 A VAL 51 -46.29 169.69 13 A VAL 68 -37.45 103.76 13 A SER 101 -172.60 116.58 14 A PRO 13 -69.81 -174.92 14 A LEU 19 -37.96 155.79 14 A VAL 21 -58.87 82.50 14 A ASP 33 -60.79 91.92 14 A VAL 51 -41.21 163.33 14 A SER 59 -37.92 -31.75 14 A VAL 68 -37.34 94.57 14 A ARG 81 -84.95 32.75 14 A ASN 82 40.07 27.52 14 A GLU 96 -42.03 155.09 15 A SER 5 -50.13 95.15 15 A ASP 10 -34.52 104.28 15 A ASP 14 -37.64 138.37 15 A LEU 19 -40.09 158.10 15 A VAL 21 -47.27 91.86 15 A LYS 30 -82.66 48.98 15 A SER 32 -35.17 149.03 15 A VAL 51 -47.61 165.18 15 A VAL 68 -41.79 109.61 15 A SER 97 -59.08 108.51 16 A SER 2 -41.20 151.63 16 A ALA 9 -34.14 144.35 16 A LEU 19 -45.06 156.16 16 A VAL 21 -46.97 96.38 16 A LYS 30 -91.35 34.20 16 A SER 32 -174.34 144.52 16 A ASN 57 -84.31 31.86 16 A VAL 68 -35.39 94.87 16 A PRO 99 -69.81 -178.31 16 A SER 100 -125.70 -54.11 17 A PRO 13 -69.78 -177.11 17 A LEU 19 -41.92 155.64 17 A VAL 21 -50.54 98.92 17 A LYS 30 -98.77 40.77 17 A GLN 35 -98.99 59.32 17 A ILE 38 -90.82 32.43 17 A VAL 51 -45.14 164.32 17 A VAL 68 -47.84 90.36 17 A PRO 99 -69.72 87.47 18 A SER 3 36.13 41.83 18 A ASP 10 -119.73 69.79 18 A LEU 19 -38.99 156.01 18 A VAL 21 -53.42 92.10 18 A SER 29 -94.17 42.46 18 A SER 32 -38.55 144.34 18 A GLN 35 -101.64 70.23 18 A ASN 57 -86.25 35.84 18 A VAL 68 -39.10 96.15 18 A ARG 81 -85.40 32.38 18 A ASN 82 39.08 34.79 18 A SER 85 -161.73 119.44 18 A SER 101 -59.82 105.43 19 A GLN 8 -85.37 45.52 19 A ASP 10 -119.88 78.75 19 A LEU 19 -42.89 155.85 19 A VAL 21 -48.47 93.03 19 A SER 31 -35.97 150.44 19 A SER 32 -38.31 119.55 19 A LYS 36 -34.86 147.49 19 A ASN 55 44.97 26.74 19 A ASN 57 -90.28 31.10 19 A VAL 68 -35.89 94.78 19 A SER 100 -107.90 -61.78 20 A LEU 19 -41.46 159.25 20 A VAL 21 -49.47 94.89 20 A LYS 30 -92.72 48.88 20 A LYS 36 -36.57 123.04 20 A ASN 57 -88.68 30.17 20 A ARG 81 -92.57 32.16 20 A ASN 82 45.01 25.83 20 A SER 101 -59.37 88.06 Solution structure of the PKD domain from KIAA 1837 protein 1 N N STRUCTURAL GENOMICS, UNKNOWN FUNCTION PKD domain, KIAA1837 protein, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, STRUCTURAL GENOMICS, UNKNOWN FUNCTION A LEU 19 A LEU 19 1 A PRO 20 A PRO 20 -0.16 A LEU 19 A LEU 19 2 A PRO 20 A PRO 20 -0.10 A LEU 19 A LEU 19 3 A PRO 20 A PRO 20 -0.16 A LEU 19 A LEU 19 4 A PRO 20 A PRO 20 -0.12 A LEU 19 A LEU 19 5 A PRO 20 A PRO 20 -0.15 A LEU 19 A LEU 19 6 A PRO 20 A PRO 20 -0.08 A LEU 19 A LEU 19 7 A PRO 20 A PRO 20 -0.08 A LEU 19 A LEU 19 8 A PRO 20 A PRO 20 -0.07 A LEU 19 A LEU 19 9 A PRO 20 A PRO 20 -0.13 A LEU 19 A LEU 19 10 A PRO 20 A PRO 20 -0.20 A LEU 19 A LEU 19 11 A PRO 20 A PRO 20 -0.17 A LEU 19 A LEU 19 12 A PRO 20 A PRO 20 -0.21 A LEU 19 A LEU 19 13 A PRO 20 A PRO 20 -0.11 A LEU 19 A LEU 19 14 A PRO 20 A PRO 20 -0.11 A LEU 19 A LEU 19 15 A PRO 20 A PRO 20 -0.11 A LEU 19 A LEU 19 16 A PRO 20 A PRO 20 -0.13 A LEU 19 A LEU 19 17 A PRO 20 A PRO 20 -0.17 A LEU 19 A LEU 19 18 A PRO 20 A PRO 20 -0.11 A LEU 19 A LEU 19 19 A PRO 20 A PRO 20 -0.16 A LEU 19 A LEU 19 20 A PRO 20 A PRO 20 -0.17 Q96JJ0_HUMAN UNP 1 243 Q96JJ0 QADAGPDKELTLPVDSTTLDGSKSSDDQKIISYLWEKTQGPDGVQLENANSSVATVTGLQVGTYVFTLTVKDERNLQSQS SVNVIVKEE 243 331 2YRL 8 96 Q96JJ0 A 1 8 96 1 expression tag GLY 1 2YRL A Q96JJ0 UNP 1 1 expression tag SER 2 2YRL A Q96JJ0 UNP 2 1 expression tag SER 3 2YRL A Q96JJ0 UNP 3 1 expression tag GLY 4 2YRL A Q96JJ0 UNP 4 1 expression tag SER 5 2YRL A Q96JJ0 UNP 5 1 expression tag SER 6 2YRL A Q96JJ0 UNP 6 1 expression tag GLY 7 2YRL A Q96JJ0 UNP 7 1 expression tag SER 97 2YRL A Q96JJ0 UNP 97 1 expression tag GLY 98 2YRL A Q96JJ0 UNP 98 1 expression tag PRO 99 2YRL A Q96JJ0 UNP 99 1 expression tag SER 100 2YRL A Q96JJ0 UNP 100 1 expression tag SER 101 2YRL A Q96JJ0 UNP 101 1 expression tag GLY 102 2YRL A Q96JJ0 UNP 102 4 3 parallel anti-parallel anti-parallel anti-parallel anti-parallel A LYS 15 A LYS 15 A THR 18 A THR 18 A GLN 84 A GLN 84 A LYS 94 A LYS 94 A THR 70 A THR 70 A LYS 78 A LYS 78 A TRP 42 A TRP 42 A GLN 46 A GLN 46 A SER 23 A SER 23 A ASP 27 A ASP 27 A VAL 60 A VAL 60 A THR 64 A THR 64 A GLN 52 A GLN 52 A GLU 54 A GLU 54