1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Goroncy, A.K.
Tochio, N.
Tomizawa, T.
Koshiba, S.
Watanabe, S.
Harada, T.
Kigawa, T.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
NE
J.Struct.Funct.Genom.
1345-711X
11
181
188
10.1007/s10969-010-9081-z
20213426
The NMR solution structures of the five constituent cold-shock domains (CSD) of the human UNR (upstream of N-ras) protein.
2010
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
8553.508
Cold shock domain-containing protein E1
FIFTH COLD-SHOCK DOMAIN
1
man
polymer
UNR protein, N-ras upstream gene protein
no
no
GSSGSSGLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFSVILNQRTGKCSACNVWRVSGPSSG
GSSGSSGLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFSVILNQRTGKCSACNVWRVSGPSSG
A
hsk002000864.3
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
CELL-FREE PROTEIN SYNTHESIS
KIAA0885
9606
Homo sapiens
PLASMID
P070129-03
RIKEN Structural Genomics/Proteomics Initiative
RSGI
NPPSFA, National Project on Protein Structural and Functional Analyses
repository
Initial release
Version format compliance
1
0
2008-04-08
1
1
2011-07-13
Y
PDBJ
Y
PDBJ
2007-04-05
REL
REL
structures with the least restraint violations
100
20
3D_15N-separated_NOESY
3D_13C-separated_NOESY
120 mM
7.0
AMBIENT
296
K
torsion angle dynamics
1
fewest violations
0.79mM COLD-SHOCK DOMAIN, 20mM d-TRIS-HCL, 100mM NaCl, 1mM d-DTT, 0.02% NaN3, 90% H2O, 10% D2O
90% H2O/10% D2O
P.GUNTERT ET AL.
refinement
CYANA
2.2.2
P.GUNTERT ET AL.
structure solution
CYANA
2.2.2
BRUKER
collection
XWINNMR
3.5
FRANK DELAGLIO
processing
NMRPipe
20060702
BRUCE A. JOHNSON
data analysis
NMRVIEW
5.0.4
NAOHIRO KOBAYASHI
data analysis
KUJIRA
0.9821
800
Bruker
Avance
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
SER
3
n
3
SER
3
A
GLY
4
n
4
GLY
4
A
SER
5
n
5
SER
5
A
SER
6
n
6
SER
6
A
GLY
7
n
7
GLY
7
A
LEU
8
n
8
LEU
8
A
ARG
9
n
9
ARG
9
A
ARG
10
n
10
ARG
10
A
ALA
11
n
11
ALA
11
A
THR
12
n
12
THR
12
A
VAL
13
n
13
VAL
13
A
GLU
14
n
14
GLU
14
A
CYS
15
n
15
CYS
15
A
VAL
16
n
16
VAL
16
A
LYS
17
n
17
LYS
17
A
ASP
18
n
18
ASP
18
A
GLN
19
n
19
GLN
19
A
PHE
20
n
20
PHE
20
A
GLY
21
n
21
GLY
21
A
PHE
22
n
22
PHE
22
A
ILE
23
n
23
ILE
23
A
ASN
24
n
24
ASN
24
A
TYR
25
n
25
TYR
25
A
GLU
26
n
26
GLU
26
A
VAL
27
n
27
VAL
27
A
GLY
28
n
28
GLY
28
A
ASP
29
n
29
ASP
29
A
SER
30
n
30
SER
30
A
LYS
31
n
31
LYS
31
A
LYS
32
n
32
LYS
32
A
LEU
33
n
33
LEU
33
A
PHE
34
n
34
PHE
34
A
PHE
35
n
35
PHE
35
A
HIS
36
n
36
HIS
36
A
VAL
37
n
37
VAL
37
A
LYS
38
n
38
LYS
38
A
GLU
39
n
39
GLU
39
A
VAL
40
n
40
VAL
40
A
GLN
41
n
41
GLN
41
A
ASP
42
n
42
ASP
42
A
GLY
43
n
43
GLY
43
A
ILE
44
n
44
ILE
44
A
GLU
45
n
45
GLU
45
A
LEU
46
n
46
LEU
46
A
GLN
47
n
47
GLN
47
A
ALA
48
n
48
ALA
48
A
GLY
49
n
49
GLY
49
A
ASP
50
n
50
ASP
50
A
GLU
51
n
51
GLU
51
A
VAL
52
n
52
VAL
52
A
GLU
53
n
53
GLU
53
A
PHE
54
n
54
PHE
54
A
SER
55
n
55
SER
55
A
VAL
56
n
56
VAL
56
A
ILE
57
n
57
ILE
57
A
LEU
58
n
58
LEU
58
A
ASN
59
n
59
ASN
59
A
GLN
60
n
60
GLN
60
A
ARG
61
n
61
ARG
61
A
THR
62
n
62
THR
62
A
GLY
63
n
63
GLY
63
A
LYS
64
n
64
LYS
64
A
CYS
65
n
65
CYS
65
A
SER
66
n
66
SER
66
A
ALA
67
n
67
ALA
67
A
CYS
68
n
68
CYS
68
A
ASN
69
n
69
ASN
69
A
VAL
70
n
70
VAL
70
A
TRP
71
n
71
TRP
71
A
ARG
72
n
72
ARG
72
A
VAL
73
n
73
VAL
73
A
SER
74
n
74
SER
74
A
GLY
75
n
75
GLY
75
A
PRO
76
n
76
PRO
76
A
SER
77
n
77
SER
77
A
SER
78
n
78
SER
78
A
GLY
79
n
79
GLY
79
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
33
A
N
LEU
33
A
O
ILE
23
A
O
ILE
23
A
O
PHE
22
A
O
PHE
22
A
N
GLU
14
A
N
GLU
14
A
N
ALA
11
A
N
ALA
11
A
O
VAL
52
A
O
VAL
52
A
N
GLU
53
A
N
GLU
53
A
O
TRP
71
A
O
TRP
71
A
N
ILE
57
A
N
ILE
57
A
O
SER
66
A
O
SER
66
2
A
GLU
14
-71.61
-71.80
3
A
VAL
27
-130.03
-40.21
3
A
PRO
76
-69.71
-176.82
3
A
SER
78
-103.43
-65.58
4
A
SER
5
-170.45
148.02
4
A
PRO
76
-69.72
89.97
5
A
LYS
17
-114.09
-73.55
6
A
VAL
16
-115.75
78.84
8
A
CYS
15
-171.48
129.73
8
A
VAL
16
-115.55
75.56
8
A
ASP
29
-62.62
-74.29
8
A
THR
62
-92.61
-60.13
8
A
VAL
70
-62.92
97.29
8
A
SER
77
-121.64
-66.13
9
A
SER
6
-97.22
-71.12
9
A
LYS
17
-92.76
-61.76
10
A
GLU
14
-71.22
-70.60
10
A
LYS
17
-132.82
-51.17
10
A
PRO
76
-69.72
78.73
11
A
SER
5
-64.33
-178.85
12
A
LYS
17
-101.24
-62.43
13
A
SER
2
-114.21
78.14
13
A
SER
5
-59.59
109.25
13
A
VAL
16
-118.50
76.74
13
A
PRO
76
-69.71
-178.97
14
A
GLU
14
-73.92
-70.38
14
A
SER
30
-173.64
116.22
14
A
SER
78
-55.90
171.56
15
A
ASP
29
-68.85
-72.20
16
A
SER
2
-129.41
-60.01
16
A
SER
5
-117.65
53.70
17
A
LYS
17
-132.08
-42.35
17
A
VAL
27
-135.39
-40.84
18
A
LYS
17
-98.63
-60.87
18
A
SER
74
-59.60
174.91
19
A
SER
5
-171.58
142.00
19
A
PRO
76
-69.76
-171.76
19
A
SER
78
-96.69
36.07
20
A
SER
6
-104.48
62.30
20
A
SER
30
-175.00
122.85
Cold shock domain-containing protein E1
Solution structure of the fifth cold-shock domain of the human KIAA0885 protein (unr protein)
1
N
N
RNA BINDING PROTEIN
CELL-FREE PROTEIN SYNTHESIS, BETA-BARREL, TRANSLATIONAL REGULATION, RNA CHAPERONE, RNA/DNA BINDING, QB FOLD, GREEK-KEY TOPOLOGY, UNR PROTEIN, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, RNA BINDING PROTEIN
CSDE1_HUMAN
UNP
1
673
O75534
LRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFSVILNQRTGKCSACNVWRV
673
738
2YTV
8
73
O75534
A
1
8
73
1
EXPRESSION TAG
GLY
1
2YTV
A
O75534
UNP
1
1
EXPRESSION TAG
SER
2
2YTV
A
O75534
UNP
2
1
EXPRESSION TAG
SER
3
2YTV
A
O75534
UNP
3
1
EXPRESSION TAG
GLY
4
2YTV
A
O75534
UNP
4
1
EXPRESSION TAG
SER
5
2YTV
A
O75534
UNP
5
1
EXPRESSION TAG
SER
6
2YTV
A
O75534
UNP
6
1
EXPRESSION TAG
GLY
7
2YTV
A
O75534
UNP
7
1
EXPRESSION TAG
SER
74
2YTV
A
O75534
UNP
74
1
EXPRESSION TAG
GLY
75
2YTV
A
O75534
UNP
75
1
EXPRESSION TAG
PRO
76
2YTV
A
O75534
UNP
76
1
EXPRESSION TAG
SER
77
2YTV
A
O75534
UNP
77
1
EXPRESSION TAG
SER
78
2YTV
A
O75534
UNP
78
1
EXPRESSION TAG
GLY
79
2YTV
A
O75534
UNP
79
5
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
33
A
LEU
33
A
HIS
36
A
HIS
36
A
PHE
20
A
PHE
20
A
ILE
23
A
ILE
23
A
ALA
11
A
ALA
11
A
CYS
15
A
CYS
15
A
GLU
51
A
GLU
51
A
GLU
53
A
GLU
53
A
TRP
71
A
TRP
71
A
ARG
72
A
ARG
72
A
ILE
57
A
ILE
57
A
LEU
58
A
LEU
58
A
CYS
65
A
CYS
65
A
SER
66
A
SER
66
1
P 1