1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Goroncy, A.K.
Tomizawa, T.
Koshiba, S.
Inoue, M.
Kigawa, T.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
NE
J.Struct.Funct.Genom.
1345-711X
11
181
188
10.1007/s10969-010-9081-z
20213426
The NMR solution structures of the five constituent cold-shock domains (CSD) of the human UNR (upstream of N-ras) protein.
2010
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
9422.335
Cold shock domain-containing protein E1
FOURTH COLD-SHOCK DOMAIN
1
man
polymer
UNR protein, N-ras upstream gene protein
no
no
GSSGSSGRLLGRNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVN
KTSGPSSG
GSSGSSGRLLGRNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVN
KTSGPSSG
A
hsk002000864.5
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
CELL-FREE PROTEIN SYNTHESIS
KIAA0885
9606
Homo sapiens
PLASMID
P040114-51
RIKEN Structural Genomics/Proteomics Initiative
RSGI
NPPSFA, National Project on Protein Structural and Functional Analyses
repository
Initial release
Version format compliance
1
0
2008-04-08
1
1
2011-07-13
Y
PDBJ
Y
PDBJ
2007-04-05
REL
REL
structures with the least restraint violations
100
20
3D_15N-separated_NOESY
3D_13C-separated_NOESY
120 mM
6.0
AMBIENT
296
K
torsion angle dynamics
1
fewest violations
1.09mM COLD-SHOCK DOMAIN, 20mM PHOSPHATE BUFFER NA, 100mM NaCl, 1mM d-DTT, 0.02% NaN3, 90% H2O, 10% D2O
90% H2O/10% D2O
P.GUNTERT ET AL.
refinement
CYANA
2.2.2
P.GUNTERT ET AL.
structure solution
CYANA
2.2.2
BRUKER
collection
XWINNMR
3.5
FRANK DELAGLIO
processing
NMRPipe
20060702
BRUCE A. JOHNSON
data analysis
NMRVIEW
5.0.4
NAOHIRO KOBAYASHI
data analysis
KUJIRA
0.9821
600
Bruker
Avance
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
SER
3
n
3
SER
3
A
GLY
4
n
4
GLY
4
A
SER
5
n
5
SER
5
A
SER
6
n
6
SER
6
A
GLY
7
n
7
GLY
7
A
ARG
8
n
8
ARG
8
A
LEU
9
n
9
LEU
9
A
LEU
10
n
10
LEU
10
A
GLY
11
n
11
GLY
11
A
ARG
12
n
12
ARG
12
A
ASN
13
n
13
ASN
13
A
SER
14
n
14
SER
14
A
ASN
15
n
15
ASN
15
A
SER
16
n
16
SER
16
A
LYS
17
n
17
LYS
17
A
ARG
18
n
18
ARG
18
A
LEU
19
n
19
LEU
19
A
LEU
20
n
20
LEU
20
A
GLY
21
n
21
GLY
21
A
TYR
22
n
22
TYR
22
A
VAL
23
n
23
VAL
23
A
ALA
24
n
24
ALA
24
A
THR
25
n
25
THR
25
A
LEU
26
n
26
LEU
26
A
LYS
27
n
27
LYS
27
A
ASP
28
n
28
ASP
28
A
ASN
29
n
29
ASN
29
A
PHE
30
n
30
PHE
30
A
GLY
31
n
31
GLY
31
A
PHE
32
n
32
PHE
32
A
ILE
33
n
33
ILE
33
A
GLU
34
n
34
GLU
34
A
THR
35
n
35
THR
35
A
ALA
36
n
36
ALA
36
A
ASN
37
n
37
ASN
37
A
HIS
38
n
38
HIS
38
A
ASP
39
n
39
ASP
39
A
LYS
40
n
40
LYS
40
A
GLU
41
n
41
GLU
41
A
ILE
42
n
42
ILE
42
A
PHE
43
n
43
PHE
43
A
PHE
44
n
44
PHE
44
A
HIS
45
n
45
HIS
45
A
TYR
46
n
46
TYR
46
A
SER
47
n
47
SER
47
A
GLU
48
n
48
GLU
48
A
PHE
49
n
49
PHE
49
A
SER
50
n
50
SER
50
A
GLY
51
n
51
GLY
51
A
ASP
52
n
52
ASP
52
A
VAL
53
n
53
VAL
53
A
ASP
54
n
54
ASP
54
A
SER
55
n
55
SER
55
A
LEU
56
n
56
LEU
56
A
GLU
57
n
57
GLU
57
A
LEU
58
n
58
LEU
58
A
GLY
59
n
59
GLY
59
A
ASP
60
n
60
ASP
60
A
MET
61
n
61
MET
61
A
VAL
62
n
62
VAL
62
A
GLU
63
n
63
GLU
63
A
TYR
64
n
64
TYR
64
A
SER
65
n
65
SER
65
A
LEU
66
n
66
LEU
66
A
SER
67
n
67
SER
67
A
LYS
68
n
68
LYS
68
A
GLY
69
n
69
GLY
69
A
LYS
70
n
70
LYS
70
A
GLY
71
n
71
GLY
71
A
ASN
72
n
72
ASN
72
A
LYS
73
n
73
LYS
73
A
VAL
74
n
74
VAL
74
A
SER
75
n
75
SER
75
A
ALA
76
n
76
ALA
76
A
GLU
77
n
77
GLU
77
A
LYS
78
n
78
LYS
78
A
VAL
79
n
79
VAL
79
A
ASN
80
n
80
ASN
80
A
LYS
81
n
81
LYS
81
A
THR
82
n
82
THR
82
A
SER
83
n
83
SER
83
A
GLY
84
n
84
GLY
84
A
PRO
85
n
85
PRO
85
A
SER
86
n
86
SER
86
A
SER
87
n
87
SER
87
A
GLY
88
n
88
GLY
88
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ILE
42
A
O
ILE
42
A
N
ILE
33
A
N
ILE
33
A
O
GLU
34
A
O
GLU
34
A
N
TYR
22
A
N
TYR
22
A
N
LEU
19
A
N
LEU
19
A
O
TYR
64
A
O
TYR
64
A
N
GLU
63
A
N
GLU
63
A
O
ASN
80
A
O
ASN
80
1
A
SER
2
58.34
-171.96
1
A
SER
6
59.81
96.92
1
A
SER
14
-170.74
-40.39
1
A
VAL
23
-53.36
107.80
1
A
ASP
28
-98.06
48.76
1
A
ASN
29
-178.35
-39.46
1
A
THR
35
-62.80
-175.65
1
A
SER
67
-153.90
54.62
2
A
SER
2
55.49
89.77
2
A
SER
6
-107.03
79.71
2
A
LEU
10
-172.74
137.88
2
A
SER
14
63.01
162.87
2
A
SER
16
-160.67
101.92
2
A
ARG
18
54.05
85.05
2
A
ASP
28
-97.77
40.47
2
A
ASN
29
-171.06
-39.96
2
A
LYS
70
52.65
89.00
2
A
ASN
72
-159.02
-61.41
2
A
PRO
85
-69.75
-177.98
3
A
SER
3
56.28
-176.82
3
A
SER
14
58.33
-174.12
3
A
ASP
28
-97.12
40.65
3
A
ASN
29
-176.47
-38.10
3
A
LYS
73
61.92
179.53
3
A
SER
86
60.16
-178.08
4
A
ARG
12
56.42
84.93
4
A
SER
16
63.13
61.28
4
A
VAL
23
-57.82
100.31
4
A
ASP
28
-96.10
42.11
4
A
ASN
29
-175.03
-41.27
4
A
HIS
38
62.94
98.25
4
A
ASP
39
-175.85
-38.31
4
A
SER
67
-118.04
51.59
4
A
LYS
68
-150.52
-62.02
4
A
LYS
78
52.95
76.80
4
A
SER
83
54.33
85.38
4
A
SER
86
-140.96
-67.23
5
A
SER
3
-106.27
-68.85
5
A
LYS
17
-173.09
92.08
5
A
ASP
28
-92.19
47.91
5
A
ASN
29
-178.91
-35.51
5
A
LYS
68
60.31
175.44
5
A
SER
87
-162.18
74.88
6
A
SER
3
56.75
-175.90
6
A
LEU
9
-161.82
106.17
6
A
VAL
23
-58.67
104.66
6
A
ASP
28
-101.08
47.47
6
A
ASN
29
-178.82
-41.03
6
A
PRO
85
-69.78
93.27
6
A
SER
87
-114.54
70.89
7
A
ARG
8
-167.61
119.15
7
A
SER
14
63.13
163.67
7
A
VAL
23
-59.88
106.15
7
A
ASP
28
-99.09
41.34
7
A
ASN
29
-174.96
-39.45
8
A
SER
2
-162.31
117.54
8
A
SER
5
61.21
178.97
8
A
SER
16
56.67
-171.79
8
A
VAL
23
-54.16
107.57
8
A
ASP
28
-98.47
44.11
8
A
ASN
29
-173.75
-42.82
8
A
HIS
38
62.86
86.82
8
A
ASP
39
-160.02
-41.08
8
A
ASP
52
59.83
94.75
8
A
LYS
68
59.27
87.06
8
A
LYS
70
-155.05
43.22
8
A
LYS
73
-161.99
109.20
8
A
SER
86
-126.06
-64.32
9
A
SER
5
-68.32
88.18
9
A
SER
6
-69.02
-178.40
9
A
SER
14
56.43
71.60
9
A
SER
16
61.90
-172.01
9
A
ASP
28
-100.26
42.18
9
A
ASN
29
-176.91
-39.71
9
A
LYS
73
61.09
99.32
9
A
SER
86
-66.47
-174.19
10
A
ASN
13
-174.40
-51.81
10
A
SER
16
-166.54
-40.09
10
A
VAL
23
-53.78
105.41
10
A
ASP
28
-91.58
46.81
10
A
ASN
29
-177.27
-44.38
10
A
ASP
52
-101.65
71.92
10
A
LYS
68
61.30
94.88
10
A
ASN
72
-153.07
-51.91
10
A
LYS
78
57.37
74.63
10
A
SER
83
58.03
-176.98
11
A
SER
6
-147.27
-69.52
11
A
ARG
8
-168.23
105.38
11
A
VAL
23
-58.34
104.33
11
A
ASP
28
-97.38
45.07
11
A
ASN
29
-177.21
-40.74
11
A
LYS
70
-151.31
46.49
11
A
ASN
72
61.21
179.83
12
A
ASN
13
-171.42
98.93
12
A
SER
14
-172.18
122.46
12
A
LYS
17
-160.13
89.44
12
A
ASP
28
-96.17
38.32
12
A
ASN
29
-168.64
-46.16
12
A
HIS
38
62.84
81.73
12
A
ASP
39
-160.12
-41.70
12
A
ASP
52
62.61
90.76
12
A
LYS
70
-53.68
104.81
12
A
SER
86
-152.55
-65.61
13
A
LEU
10
57.94
179.74
13
A
SER
16
-164.37
34.21
13
A
VAL
23
-55.93
104.89
13
A
ASP
28
-94.85
38.50
13
A
ASN
29
-167.23
-43.70
13
A
ASN
72
61.18
169.60
14
A
SER
2
57.80
-171.98
14
A
ARG
8
-154.01
55.98
14
A
ARG
12
-129.82
-55.29
14
A
SER
14
60.05
92.01
14
A
LYS
17
-170.15
-47.41
14
A
ARG
18
57.59
88.44
14
A
ASP
28
-95.63
41.53
14
A
ASN
29
-174.48
-37.36
14
A
LYS
70
62.21
98.98
14
A
LYS
73
61.81
93.46
14
A
SER
83
55.51
72.01
14
A
SER
87
-113.22
-73.68
15
A
LEU
9
53.02
80.79
15
A
ASN
13
54.46
90.97
15
A
SER
14
-111.53
66.03
15
A
ASN
15
-156.18
27.59
15
A
ASN
29
-178.60
-42.36
15
A
SER
67
-114.71
79.86
15
A
LYS
68
53.52
85.26
15
A
LYS
70
-154.40
62.34
15
A
THR
82
-152.22
40.41
15
A
SER
86
61.29
86.16
16
A
SER
2
62.63
164.53
16
A
ARG
8
60.31
94.01
16
A
ASN
13
-156.57
29.17
16
A
ASN
15
-96.24
43.21
16
A
ARG
18
-110.96
77.66
16
A
ASP
28
-92.19
45.48
16
A
ASN
29
-173.21
-39.90
16
A
SER
83
-172.45
-68.96
17
A
SER
2
-92.95
56.55
17
A
SER
6
-115.60
71.34
17
A
ARG
8
-168.60
98.78
17
A
ARG
12
-140.70
-45.52
17
A
ASP
28
-100.56
40.97
17
A
ASN
29
-173.48
-37.47
17
A
LYS
68
61.75
170.12
17
A
LYS
73
-173.22
119.62
17
A
SER
83
-163.96
41.50
18
A
SER
2
-168.02
83.25
18
A
ASN
13
57.22
82.96
18
A
SER
14
-97.34
58.94
18
A
ASP
28
-95.14
37.10
18
A
ASN
29
-169.41
-50.39
18
A
ASP
52
54.63
75.24
18
A
LYS
68
59.53
93.99
18
A
LYS
73
59.42
74.25
19
A
SER
6
-172.34
101.16
19
A
ASP
28
-98.30
43.82
19
A
ASN
29
-176.42
-36.59
19
A
HIS
38
63.19
73.06
19
A
ASP
39
-148.91
-47.44
19
A
LYS
78
59.65
72.49
19
A
THR
82
-140.38
38.58
20
A
SER
2
62.54
163.72
20
A
SER
3
-138.28
-43.22
20
A
ARG
8
57.31
-175.27
20
A
LYS
17
-176.03
129.62
20
A
ASP
28
-98.20
46.41
20
A
ASN
29
-176.70
-37.93
20
A
LYS
70
-145.37
29.49
20
A
ASN
72
59.27
-174.07
Cold shock domain-containing protein E1
Solution structure of the fourth cold-shock domain of the human KIAA0885 protein (UNR protein)
1
N
N
RNA BINDING PROTEIN
CELL-FREE PROTEIN SYNTHESIS, BETA-BARREL, TRANSLATIONAL REGULATION, RNA CHAPERONE, RNA/DNA BINDING, QB FOLD, GREEK-KEY TOPOLOGY, UNR PROTEIN, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, RNA BINDING PROTEIN
CSDE1_HUMAN
UNP
1
508
O75534
RLLGRNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVNKT
508
582
2YTY
8
82
O75534
A
1
8
82
1
EXPRESSION TAG
GLY
1
2YTY
A
O75534
UNP
1
1
EXPRESSION TAG
SER
2
2YTY
A
O75534
UNP
2
1
EXPRESSION TAG
SER
3
2YTY
A
O75534
UNP
3
1
EXPRESSION TAG
GLY
4
2YTY
A
O75534
UNP
4
1
EXPRESSION TAG
SER
5
2YTY
A
O75534
UNP
5
1
EXPRESSION TAG
SER
6
2YTY
A
O75534
UNP
6
1
EXPRESSION TAG
GLY
7
2YTY
A
O75534
UNP
7
1
EXPRESSION TAG
SER
83
2YTY
A
O75534
UNP
83
1
EXPRESSION TAG
GLY
84
2YTY
A
O75534
UNP
84
1
EXPRESSION TAG
PRO
85
2YTY
A
O75534
UNP
85
1
EXPRESSION TAG
SER
86
2YTY
A
O75534
UNP
86
1
EXPRESSION TAG
SER
87
2YTY
A
O75534
UNP
87
1
EXPRESSION TAG
GLY
88
2YTY
A
O75534
UNP
88
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
41
A
GLU
41
A
HIS
45
A
HIS
45
A
PHE
30
A
PHE
30
A
GLU
34
A
GLU
34
A
LEU
19
A
LEU
19
A
LEU
26
A
LEU
26
A
MET
61
A
MET
61
A
TYR
64
A
TYR
64
A
ASN
80
A
ASN
80
A
LYS
81
A
LYS
81
1
P 1