1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 He, F. Muto, Y. Inoue, M. Kigawa, T. Shirouzu, M. Tarada, T. Yokoyama, S. RIKEN Structural Genomics/Proteomics Initiative (RSGI) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer To be Published 0353 Solution structure of the SP-RING domain in non-SMC element 2 homolog (MMS21, S. cerevisiae) 10.2210/pdb2yu4/pdb pdb_00002yu4 10635.110 E3 SUMO-protein ligase NSE2 6.-.-.- SP-RING domain 1 man polymer 65.409 ZINC ION 1 syn non-polymer Non-structural maintenance of chromosomes element 2 homolog, Non-SMC element 2 homolog, hMMS21 no no GSSGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHN KKRHRHSESGPSSG GSSGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHN KKRHRHSESGPSSG A hsi002021786.1 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample cell-free protein synthesis C8orf36 9606 Homo sapiens plasmid P050302-25 RIKEN Structural Genomics/Proteomics Initiative RSGI NPPSFA, National Project on Protein Structural and Functional Analyses database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif struct_site repository Initial release Version format compliance Data collection Database references Derived calculations 1 0 2007-10-09 1 1 2011-07-13 1 2 2022-03-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id HELIX DETERMINATION METHOD: AUTHOR DETERMINED Y PDBJ Y PDBJ 2007-04-05 REL REL ZN ZINC ION structures with the least restraint violations, target function 100 20 3D_13C-separated_NOESY 3D_15N-separated_NOESY 120mM 7.0 ambient 298 K torsion angle dynamics 1 lowest energy 1.0mM 13C, 15N-labeled protein; 20mM d-Tris-HCl (pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O 90% H2O/10% D2O Bruker collection XwinNMR 3.5 Delaglio, F. processing NMRPipe 20030801 Johnson, B.A. data analysis NMRView 5.0.4 Kobayashi, N. data analysis KUJIRA 0.9820 Guntert, P. structure solution CYANA 2.1 Guntert, P. refinement CYANA 2.1 800 Bruker AVANCE ZN 201 2 ZN ZN 201 A GLY 1 n 1 GLY 1 A SER 2 n 2 SER 2 A SER 3 n 3 SER 3 A GLY 4 n 4 GLY 4 A SER 5 n 5 SER 5 A SER 6 n 6 SER 6 A GLY 7 n 7 GLY 7 A PHE 8 n 8 PHE 8 A THR 9 n 9 THR 9 A CYS 10 n 10 CYS 10 A PRO 11 n 11 PRO 11 A ILE 12 n 12 ILE 12 A THR 13 n 13 THR 13 A LYS 14 n 14 LYS 14 A GLU 15 n 15 GLU 15 A GLU 16 n 16 GLU 16 A MET 17 n 17 MET 17 A LYS 18 n 18 LYS 18 A LYS 19 n 19 LYS 19 A PRO 20 n 20 PRO 20 A VAL 21 n 21 VAL 21 A LYS 22 n 22 LYS 22 A ASN 23 n 23 ASN 23 A LYS 24 n 24 LYS 24 A VAL 25 n 25 VAL 25 A CYS 26 n 26 CYS 26 A GLY 27 n 27 GLY 27 A HIS 28 n 28 HIS 28 A THR 29 n 29 THR 29 A TYR 30 n 30 TYR 30 A GLU 31 n 31 GLU 31 A GLU 32 n 32 GLU 32 A ASP 33 n 33 ASP 33 A ALA 34 n 34 ALA 34 A ILE 35 n 35 ILE 35 A VAL 36 n 36 VAL 36 A ARG 37 n 37 ARG 37 A MET 38 n 38 MET 38 A ILE 39 n 39 ILE 39 A GLU 40 n 40 GLU 40 A SER 41 n 41 SER 41 A ARG 42 n 42 ARG 42 A GLN 43 n 43 GLN 43 A LYS 44 n 44 LYS 44 A ARG 45 n 45 ARG 45 A LYS 46 n 46 LYS 46 A LYS 47 n 47 LYS 47 A LYS 48 n 48 LYS 48 A ALA 49 n 49 ALA 49 A TYR 50 n 50 TYR 50 A CYS 51 n 51 CYS 51 A PRO 52 n 52 PRO 52 A GLN 53 n 53 GLN 53 A ILE 54 n 54 ILE 54 A GLY 55 n 55 GLY 55 A CYS 56 n 56 CYS 56 A SER 57 n 57 SER 57 A HIS 58 n 58 HIS 58 A THR 59 n 59 THR 59 A ASP 60 n 60 ASP 60 A ILE 61 n 61 ILE 61 A ARG 62 n 62 ARG 62 A LYS 63 n 63 LYS 63 A SER 64 n 64 SER 64 A ASP 65 n 65 ASP 65 A LEU 66 n 66 LEU 66 A ILE 67 n 67 ILE 67 A GLN 68 n 68 GLN 68 A ASP 69 n 69 ASP 69 A GLU 70 n 70 GLU 70 A ALA 71 n 71 ALA 71 A LEU 72 n 72 LEU 72 A ARG 73 n 73 ARG 73 A ARG 74 n 74 ARG 74 A ALA 75 n 75 ALA 75 A ILE 76 n 76 ILE 76 A GLU 77 n 77 GLU 77 A ASN 78 n 78 ASN 78 A HIS 79 n 79 HIS 79 A ASN 80 n 80 ASN 80 A LYS 81 n 81 LYS 81 A LYS 82 n 82 LYS 82 A ARG 83 n 83 ARG 83 A HIS 84 n 84 HIS 84 A ARG 85 n 85 ARG 85 A HIS 86 n 86 HIS 86 A SER 87 n 87 SER 87 A GLU 88 n 88 GLU 88 A SER 89 n 89 SER 89 A GLY 90 n 90 GLY 90 A PRO 91 n 91 PRO 91 A SER 92 n 92 SER 92 A SER 93 n 93 SER 93 A GLY 94 n 94 GLY 94 A author_defined_assembly 1 monomeric A CYS 26 A SG CYS 26 1_555 A ZN 201 B ZN ZN 1_555 A HIS 28 A ND1 HIS 28 1_555 109.0 A CYS 26 A SG CYS 26 1_555 A ZN 201 B ZN ZN 1_555 A CYS 51 A SG CYS 51 1_555 105.8 A HIS 28 A ND1 HIS 28 1_555 A ZN 201 B ZN ZN 1_555 A CYS 51 A SG CYS 51 1_555 114.6 A CYS 26 A SG CYS 26 1_555 A ZN 201 B ZN ZN 1_555 A CYS 56 A SG CYS 56 1_555 110.2 A HIS 28 A ND1 HIS 28 1_555 A ZN 201 B ZN ZN 1_555 A CYS 56 A SG CYS 56 1_555 114.6 A CYS 51 A SG CYS 51 1_555 A ZN 201 B ZN ZN 1_555 A CYS 56 A SG CYS 56 1_555 102.1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O TYR 30 A O TYR 30 A N VAL 21 A N VAL 21 A N LYS 22 A N LYS 22 A O ILE 67 A O ILE 67 1 A SER 3 -123.26 -52.35 1 A ILE 12 -100.56 -66.98 1 A HIS 28 -53.78 172.86 1 A CYS 51 -51.11 103.55 1 A ILE 54 -51.57 107.08 1 A THR 59 -154.42 35.84 1 A ARG 83 56.88 91.23 1 A HIS 84 -145.19 38.71 1 A ARG 85 -135.48 -65.24 1 A HIS 86 -95.35 -69.71 1 A GLU 88 -168.89 67.67 2 A SER 3 57.34 72.30 2 A ILE 12 -99.92 -69.24 2 A HIS 28 -54.01 173.29 2 A CYS 51 -50.97 103.60 2 A ILE 54 -51.56 104.70 2 A THR 59 -152.46 37.90 2 A ARG 85 -149.48 -50.06 2 A SER 89 -147.45 41.76 2 A SER 92 -153.10 86.45 3 A ILE 12 -99.45 -68.61 3 A HIS 28 -54.24 173.86 3 A CYS 51 -51.12 103.52 3 A ILE 54 -53.36 102.04 3 A THR 59 -154.31 37.29 3 A ARG 85 63.14 175.32 3 A HIS 86 60.35 -177.35 4 A ILE 12 -95.05 -63.89 4 A HIS 28 -54.36 173.77 4 A CYS 51 -51.12 103.67 4 A ILE 54 -51.61 108.03 4 A THR 59 -154.48 34.61 4 A HIS 86 60.36 96.34 4 A SER 92 57.32 70.66 5 A SER 2 -157.79 43.08 5 A ILE 12 -98.70 -67.69 5 A HIS 28 -53.93 173.16 5 A CYS 51 -51.06 103.57 5 A ILE 54 -51.98 103.24 5 A THR 59 -154.19 35.40 5 A ARG 85 57.75 78.11 5 A HIS 86 -148.21 -66.97 5 A SER 87 -168.56 48.29 6 A ILE 12 -101.43 -63.32 6 A HIS 28 -55.79 177.19 6 A CYS 51 -51.00 103.65 6 A ILE 54 -51.59 105.46 6 A THR 59 -153.20 38.13 6 A HIS 84 -59.78 174.58 6 A GLU 88 -108.77 74.56 6 A SER 89 59.47 95.89 7 A ILE 12 -96.51 -65.83 7 A CYS 51 -51.15 103.68 7 A ILE 54 -51.58 104.03 7 A THR 59 -154.39 36.43 7 A ARG 83 57.47 73.05 7 A HIS 84 -59.55 107.25 7 A SER 93 -148.99 -69.38 8 A SER 2 -163.58 115.76 8 A SER 5 -167.87 119.46 8 A SER 6 -142.45 -67.21 8 A ILE 12 -96.25 -67.78 8 A HIS 28 -56.56 177.50 8 A CYS 51 -51.20 103.61 8 A ILE 54 -51.71 104.49 8 A THR 59 -154.44 34.52 8 A ARG 83 62.97 102.98 8 A HIS 86 57.85 87.67 9 A ILE 12 -95.39 -64.51 9 A HIS 28 -57.17 177.48 9 A CYS 51 -50.94 103.61 9 A ILE 54 -51.68 109.79 9 A THR 59 -152.83 34.97 9 A ARG 85 -155.66 33.07 10 A HIS 28 -54.12 173.23 10 A CYS 51 -51.23 103.68 10 A ILE 54 -51.57 104.51 10 A THR 59 -154.38 37.43 10 A GLU 88 62.64 167.78 10 A SER 92 -161.68 34.58 11 A ILE 12 -96.84 -64.63 11 A HIS 28 -57.09 179.66 11 A CYS 51 -51.13 103.63 11 A ILE 54 -51.62 108.88 11 A THR 59 -153.55 34.14 11 A ARG 83 59.90 95.09 11 A HIS 84 -130.72 -47.60 11 A SER 93 -146.99 -68.20 12 A SER 2 -55.25 101.46 12 A SER 3 60.16 177.84 12 A SER 6 54.71 -171.13 12 A ILE 12 -98.76 -67.56 12 A HIS 28 -54.30 173.87 12 A CYS 51 -51.15 103.62 12 A ILE 54 -51.69 108.33 12 A THR 59 -154.53 33.93 12 A HIS 86 62.11 168.67 12 A SER 92 -162.46 104.49 13 A ILE 12 -99.61 -64.45 13 A HIS 28 -57.51 179.42 13 A CYS 51 -51.02 103.66 13 A THR 59 -151.30 35.97 13 A SER 92 63.12 96.00 14 A SER 2 -176.87 -44.99 14 A SER 3 -146.66 44.33 14 A ILE 12 -96.62 -65.15 14 A HIS 28 -57.45 179.90 14 A CYS 51 -51.14 103.65 14 A ILE 54 -51.56 109.22 14 A THR 59 -151.44 37.12 14 A ARG 83 63.03 171.88 14 A ARG 85 61.70 68.34 14 A GLU 88 55.22 85.51 15 A SER 3 -92.83 50.96 15 A SER 6 -98.48 39.52 15 A ILE 12 -95.42 -62.45 15 A CYS 51 -51.13 103.62 15 A THR 59 -152.13 34.60 15 A HIS 84 54.51 83.46 15 A HIS 86 -118.96 77.02 15 A GLU 88 -106.72 77.95 15 A SER 89 -162.13 -43.78 15 A SER 92 -165.28 57.56 16 A SER 3 61.97 -174.22 16 A ILE 12 -99.03 -68.83 16 A HIS 28 -54.08 173.47 16 A CYS 51 -51.22 103.64 16 A ILE 54 -51.67 103.98 16 A THR 59 -154.19 35.05 16 A ARG 85 69.17 -75.44 17 A SER 3 -174.00 107.36 17 A SER 6 -138.32 -48.47 17 A HIS 28 -55.03 174.81 17 A CYS 51 -51.11 103.65 17 A ILE 54 -51.67 103.31 17 A THR 59 -152.54 38.28 17 A ARG 83 69.19 -75.39 17 A HIS 84 -174.38 86.83 17 A SER 89 62.35 96.94 17 A SER 92 -155.92 28.52 17 A SER 93 -160.64 103.01 18 A SER 2 -176.61 -52.19 18 A SER 3 72.13 -69.45 18 A ILE 12 -96.98 -67.61 18 A HIS 28 -57.20 -179.92 18 A CYS 51 -51.11 103.63 18 A ILE 54 -51.72 107.18 18 A THR 59 -154.57 32.71 18 A ARG 83 62.21 168.71 18 A ARG 85 61.90 70.64 18 A SER 87 -143.84 -61.16 18 A SER 93 -131.21 -42.14 19 A SER 2 69.31 -75.72 19 A SER 3 58.16 76.55 19 A ILE 12 -97.11 -65.46 19 A HIS 28 -57.39 179.94 19 A CYS 51 -51.11 103.69 19 A THR 59 -151.31 36.58 19 A SER 89 -119.58 70.72 19 A PRO 91 -69.72 93.20 20 A SER 6 -110.15 72.71 20 A ILE 12 -96.03 -65.04 20 A HIS 28 -57.23 179.82 20 A CYS 51 -51.07 103.64 20 A ILE 54 -51.57 109.96 20 A THR 59 -151.22 36.60 20 A ARG 83 69.19 -75.38 20 A HIS 84 -163.82 52.58 Solution structure of the SP-RING domain in non-SMC element 2 homolog (MMS21, S. cerevisiae) 1 N N 2 N N A GLU 32 A GLU 32 HELX_P A GLN 43 A GLN 43 1 1 12 A LYS 63 A LYS 63 HELX_P A ASP 65 A ASP 65 5 2 3 A GLU 70 A GLU 70 HELX_P A ASN 80 A ASN 80 1 3 11 metalc 2.245 A CYS 26 A SG CYS 26 1_555 A ZN 201 B ZN ZN 1_555 metalc 2.052 A HIS 28 A ND1 HIS 28 1_555 A ZN 201 B ZN ZN 1_555 metalc 2.344 A CYS 51 A SG CYS 51 1_555 A ZN 201 B ZN ZN 1_555 metalc 2.349 A CYS 56 A SG CYS 56 1_555 A ZN 201 B ZN ZN 1_555 APOPTOSIS SP-RING domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, APOPTOSIS NSE2_HUMAN UNP 1 167 Q96MF7 FTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKRHRHS E 167 247 2YU4 8 88 Q96MF7 A 1 8 88 1 expression tag GLY 1 2YU4 A Q96MF7 UNP 1 1 expression tag SER 2 2YU4 A Q96MF7 UNP 2 1 expression tag SER 3 2YU4 A Q96MF7 UNP 3 1 expression tag GLY 4 2YU4 A Q96MF7 UNP 4 1 expression tag SER 5 2YU4 A Q96MF7 UNP 5 1 expression tag SER 6 2YU4 A Q96MF7 UNP 6 1 expression tag GLY 7 2YU4 A Q96MF7 UNP 7 1 expression tag SER 89 2YU4 A Q96MF7 UNP 89 1 expression tag GLY 90 2YU4 A Q96MF7 UNP 90 1 expression tag PRO 91 2YU4 A Q96MF7 UNP 91 1 expression tag SER 92 2YU4 A Q96MF7 UNP 92 1 expression tag SER 93 2YU4 A Q96MF7 UNP 93 1 expression tag GLY 94 2YU4 A Q96MF7 UNP 94 3 anti-parallel anti-parallel A THR 29 A THR 29 A GLU 31 A GLU 31 A PRO 20 A PRO 20 A ASN 23 A ASN 23 A LEU 66 A LEU 66 A GLN 68 A GLN 68 BINDING SITE FOR RESIDUE ZN A 201 A ZN 201 Software 4 A CYS 26 A CYS 26 4 1_555 A HIS 28 A HIS 28 4 1_555 A CYS 51 A CYS 51 4 1_555 A CYS 56 A CYS 56 4 1_555