0.016175 0.009339 0.000000 0.000000 0.018677 0.000000 0.000000 0.000000 0.007274 0.00000 0.00000 0.00000 Wang, H. Kishishita, S. Murayama, K. Takemoto, C. Terada, T. Shirouzu, M. RIKEN Structural Genomics/Proteomics Initiative (RSGI) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 61.824 61.824 137.482 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Struct.Biol. JSBIEM 0803 1047-8477 166 32 37 10.1016/j.jsb.2008.12.003 19135534 Novel dimerization mode of the human Bcl-2 family protein Bak, a mitochondrial apoptosis regulator. 2009 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE 2006-10-30 MAR scanner 300 mm plate SINGLE WAVELENGTH M x-ray 1 0.97105 1.0 22-ID APS 0.97105 SYNCHROTRON APS BEAMLINE 22-ID 18641.266 Bcl-2 homologous antagonist/killer residues 23-185 1 man polymer 96.063 SULFATE ION 1 syn non-polymer 18.015 water 19 nat water MS0836, Apoptosis regulator BAK, Bcl-2-like 7 protein no yes SEEQVAQDTEEVFRSYVFYRHQQEQEAEGVAAPADPE(MSE)VTLPLQPSST(MSE)GQVGRQLAIIGDDINRRYDSEFQ T(MSE)LQHLQPTAENAYEYFTKIATSLFESGINWGRVVALLGFGYRLALHVYQHGLTGFLGQVTRFVVDF(MSE)LHHC IARWIAQRGGWVAALNLGN SEEQVAQDTEEVFRSYVFYRHQQEQEAEGVAAPADPEMVTLPLQPSSTMGQVGRQLAIIGDDINRRYDSEFQTMLQHLQP TAENAYEYFTKIATSLFESGINWGRVVALLGFGYRLALHVYQHGLTGFLGQVTRFVVDFMLHHCIARWIAQRGGWVAALN LGN A hss001003453.1 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample 9606 Homo sapiens Cell-free protein synthesis PLASMID PK060220-06 1 2.03 39.54 VAPOR DIFFUSION, HANGING DROP 5.2 ammonium sulfate, iso-propanol, pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 RIKEN Structural Genomics/Proteomics Initiative RSGI NPPSFA, National Project on Protein Structural and Functional Analyses repository Initial release Version format compliance Version format compliance 1 0 2008-04-15 1 1 2008-10-08 1 2 2011-07-13 Y PDBJ Y PDBJ 2007-04-09 REL REL SO4 SULFATE ION HOH water SO4 201 2 SO4 SO4 201 A HOH 202 3 HOH HOH 202 A HOH 203 3 HOH HOH 203 A HOH 204 3 HOH HOH 204 A HOH 205 3 HOH HOH 205 A HOH 206 3 HOH HOH 206 A HOH 207 3 HOH HOH 207 A HOH 208 3 HOH HOH 208 A HOH 209 3 HOH HOH 209 A HOH 210 3 HOH HOH 210 A HOH 211 3 HOH HOH 211 A HOH 212 3 HOH HOH 212 A HOH 213 3 HOH HOH 213 A HOH 214 3 HOH HOH 214 A HOH 215 3 HOH HOH 215 A HOH 216 3 HOH HOH 216 A HOH 217 3 HOH HOH 217 A HOH 218 3 HOH HOH 218 A HOH 219 3 HOH HOH 219 A HOH 220 3 HOH HOH 220 A SER 23 n 1 SER 23 A GLU 24 n 2 GLU 24 A GLU 25 n 3 GLU 25 A GLN 26 n 4 GLN 26 A VAL 27 n 5 VAL 27 A ALA 28 n 6 ALA 28 A GLN 29 n 7 GLN 29 A ASP 30 n 8 ASP 30 A THR 31 n 9 THR 31 A GLU 32 n 10 GLU 32 A GLU 33 n 11 GLU 33 A VAL 34 n 12 VAL 34 A PHE 35 n 13 PHE 35 A ARG 36 n 14 ARG 36 A SER 37 n 15 SER 37 A TYR 38 n 16 TYR 38 A VAL 39 n 17 VAL 39 A PHE 40 n 18 PHE 40 A TYR 41 n 19 TYR 41 A ARG 42 n 20 ARG 42 A HIS 43 n 21 HIS 43 A GLN 44 n 22 GLN 44 A GLN 45 n 23 GLN 45 A GLU 46 n 24 GLU 46 A GLN 47 n 25 GLN 47 A GLU 48 n 26 GLU 48 A n 27 49 A n 28 50 A n 29 51 A VAL 52 n 30 VAL 52 A ALA 53 n 31 ALA 53 A ALA 54 n 32 ALA 54 A PRO 55 n 33 PRO 55 A ALA 56 n 34 ALA 56 A ASP 57 n 35 ASP 57 A PRO 58 n 36 PRO 58 A GLU 59 n 37 GLU 59 A MSE 60 n 38 MSE 60 A VAL 61 n 39 VAL 61 A THR 62 n 40 THR 62 A LEU 63 n 41 LEU 63 A PRO 64 n 42 PRO 64 A LEU 65 n 43 LEU 65 A GLN 66 n 44 GLN 66 A PRO 67 n 45 PRO 67 A SER 68 n 46 SER 68 A SER 69 n 47 SER 69 A THR 70 n 48 THR 70 A MSE 71 n 49 MSE 71 A GLY 72 n 50 GLY 72 A GLN 73 n 51 GLN 73 A VAL 74 n 52 VAL 74 A GLY 75 n 53 GLY 75 A ARG 76 n 54 ARG 76 A GLN 77 n 55 GLN 77 A LEU 78 n 56 LEU 78 A ALA 79 n 57 ALA 79 A ILE 80 n 58 ILE 80 A ILE 81 n 59 ILE 81 A GLY 82 n 60 GLY 82 A ASP 83 n 61 ASP 83 A ASP 84 n 62 ASP 84 A ILE 85 n 63 ILE 85 A ASN 86 n 64 ASN 86 A ARG 87 n 65 ARG 87 A ARG 88 n 66 ARG 88 A TYR 89 n 67 TYR 89 A ASP 90 n 68 ASP 90 A SER 91 n 69 SER 91 A GLU 92 n 70 GLU 92 A PHE 93 n 71 PHE 93 A GLN 94 n 72 GLN 94 A THR 95 n 73 THR 95 A MSE 96 n 74 MSE 96 A LEU 97 n 75 LEU 97 A GLN 98 n 76 GLN 98 A HIS 99 n 77 HIS 99 A LEU 100 n 78 LEU 100 A GLN 101 n 79 GLN 101 A PRO 102 n 80 PRO 102 A THR 103 n 81 THR 103 A ALA 104 n 82 ALA 104 A GLU 105 n 83 GLU 105 A ASN 106 n 84 ASN 106 A ALA 107 n 85 ALA 107 A TYR 108 n 86 TYR 108 A GLU 109 n 87 GLU 109 A TYR 110 n 88 TYR 110 A PHE 111 n 89 PHE 111 A THR 112 n 90 THR 112 A LYS 113 n 91 LYS 113 A ILE 114 n 92 ILE 114 A ALA 115 n 93 ALA 115 A THR 116 n 94 THR 116 A SER 117 n 95 SER 117 A LEU 118 n 96 LEU 118 A PHE 119 n 97 PHE 119 A GLU 120 n 98 GLU 120 A SER 121 n 99 SER 121 A GLY 122 n 100 GLY 122 A ILE 123 n 101 ILE 123 A ASN 124 n 102 ASN 124 A TRP 125 n 103 TRP 125 A GLY 126 n 104 GLY 126 A ARG 127 n 105 ARG 127 A VAL 128 n 106 VAL 128 A VAL 129 n 107 VAL 129 A ALA 130 n 108 ALA 130 A LEU 131 n 109 LEU 131 A LEU 132 n 110 LEU 132 A GLY 133 n 111 GLY 133 A PHE 134 n 112 PHE 134 A GLY 135 n 113 GLY 135 A TYR 136 n 114 TYR 136 A ARG 137 n 115 ARG 137 A LEU 138 n 116 LEU 138 A ALA 139 n 117 ALA 139 A LEU 140 n 118 LEU 140 A HIS 141 n 119 HIS 141 A VAL 142 n 120 VAL 142 A TYR 143 n 121 TYR 143 A GLN 144 n 122 GLN 144 A HIS 145 n 123 HIS 145 A GLY 146 n 124 GLY 146 A LEU 147 n 125 LEU 147 A THR 148 n 126 THR 148 A GLY 149 n 127 GLY 149 A PHE 150 n 128 PHE 150 A LEU 151 n 129 LEU 151 A GLY 152 n 130 GLY 152 A GLN 153 n 131 GLN 153 A VAL 154 n 132 VAL 154 A THR 155 n 133 THR 155 A ARG 156 n 134 ARG 156 A PHE 157 n 135 PHE 157 A VAL 158 n 136 VAL 158 A VAL 159 n 137 VAL 159 A ASP 160 n 138 ASP 160 A PHE 161 n 139 PHE 161 A MSE 162 n 140 MSE 162 A LEU 163 n 141 LEU 163 A HIS 164 n 142 HIS 164 A HIS 165 n 143 HIS 165 A CYS 166 n 144 CYS 166 A ILE 167 n 145 ILE 167 A ALA 168 n 146 ALA 168 A ARG 169 n 147 ARG 169 A TRP 170 n 148 TRP 170 A ILE 171 n 149 ILE 171 A ALA 172 n 150 ALA 172 A GLN 173 n 151 GLN 173 A ARG 174 n 152 ARG 174 A GLY 175 n 153 GLY 175 A GLY 176 n 154 GLY 176 A TRP 177 n 155 TRP 177 A VAL 178 n 156 VAL 178 A ALA 179 n 157 ALA 179 A ALA 180 n 158 ALA 180 A LEU 181 n 159 LEU 181 A ASN 182 n 160 ASN 182 A LEU 183 n 161 LEU 183 A GLY 184 n 162 GLY 184 A n 163 185 A author_and_software_defined_assembly PISA 1 monomeric A MSE 60 SELENOMETHIONINE A MSE 38 MET A MSE 71 SELENOMETHIONINE A MSE 49 MET A MSE 96 SELENOMETHIONINE A MSE 74 MET A MSE 162 SELENOMETHIONINE A MSE 140 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A ALA 49 A ALA 27 1 Y 1 A GLU 50 A GLU 28 1 Y 1 A GLY 51 A GLY 29 1 Y 1 A ASN 185 A ASN 163 1 Y 1 10.35 1.50 119.30 129.65 A A A C N CA LEU PRO PRO 63 64 64 Y 1 10.71 1.50 119.30 130.01 A A A C N CA GLN PRO PRO 66 67 67 Y 1 9.31 1.50 119.30 128.61 A A A C N CA GLN PRO PRO 101 102 102 Y 1 A ALA 53 -101.39 76.25 1 A PRO 64 -39.30 -10.15 1 A LEU 65 -24.94 147.69 1 A PRO 67 -17.43 -58.21 1 A HIS 99 -46.44 -74.34 1 A GLN 101 13.64 88.08 1 A ALA 107 -32.81 -29.75 1 A SER 121 -90.69 58.59 protein_rep.param protein.top water_rep.param ion.param 50.2 -3.40 2.27 0.00 -3.40 0.00 6.81 0.248 0.014 0.214 0.214 2.50 49.89 333 5832 5.7 99.4 RANDOM 150963.68 0.000000 1 RESTRAINED THROUGHOUT 0.0 SAD FLAT MODEL 60.1895 0.383717 0.37 0.29 5.00 0.21 0.16 2.50 49.89 19 1300 5 0 1276 0.008 1.7 21.7 0.93 0.298 0.040 0.199 2.66 55 867 6 6.0 98.7 29.1 2.5 50 2YV6 5908 -3 0.092 1 25.9 22.2 99.8 2.50 2.59 14.6 563 0.265 23.3 100 refinement CNS 1.1 data collection HKL-2000 data reduction HKL-2000 data scaling HKL-2000 phasing SOLVE Bcl-2 homologous antagonist/killer Crystal structure of human Bcl-2 family protein Bak 1 N N 2 N N 3 N N A SER 23 A SER 1 HELX_P A GLU 46 A GLU 24 1 1 24 A ASP 57 A ASP 35 HELX_P A VAL 61 A VAL 39 5 2 5 A SER 69 A SER 47 HELX_P A GLN 101 A GLN 79 1 3 33 A ASN 106 A ASN 84 HELX_P A PHE 119 A PHE 97 1 4 14 A ASN 124 A ASN 102 HELX_P A HIS 145 A HIS 123 1 5 22 A PHE 150 A PHE 128 HELX_P A HIS 165 A HIS 143 1 6 16 A CYS 166 A CYS 144 HELX_P A ARG 174 A ARG 152 1 7 9 A GLY 176 A GLY 154 HELX_P A LEU 183 A LEU 161 5 8 8 disulf 2.347 A CYS 166 A SG CYS 144 1_555 A CYS 166 A SG CYS 144 12_544 covale 1.329 A GLU 59 A C GLU 37 1_555 A MSE 60 A N MSE 38 1_555 covale 1.330 A MSE 60 A C MSE 38 1_555 A VAL 61 A N VAL 39 1_555 covale 1.333 A THR 70 A C THR 48 1_555 A MSE 71 A N MSE 49 1_555 covale 1.331 A MSE 71 A C MSE 49 1_555 A GLY 72 A N GLY 50 1_555 covale 1.327 A THR 95 A C THR 73 1_555 A MSE 96 A N MSE 74 1_555 covale 1.327 A MSE 96 A C MSE 74 1_555 A LEU 97 A N LEU 75 1_555 covale 1.330 A PHE 161 A C PHE 139 1_555 A MSE 162 A N MSE 140 1_555 covale 1.326 A MSE 162 A C MSE 140 1_555 A LEU 163 A N LEU 141 1_555 APOPTOSIS STRUCTURE GENOMICS, BCL domain, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Apoptosis BAK_HUMAN UNP 1 23 Q16611 SEEQVAQDTEEVFRSYVFYRHQQEQEAEGVAAPADPEMVTLPLQPSSTMGQVGRQLAIIGDDINRRYDSEFQTMLQHLQP TAENAYEYFTKIATSLFESGINWGRVVALLGFGYRLALHVYQHGLTGFLGQVTRFVVDFMLHHCIARWIAQRGGWVAALN LGN 23 185 2YV6 23 185 Q16611 A 1 1 163 BINDING SITE FOR RESIDUE SO4 A 201 Software 8 A ASN 124 A ASN 102 8 1_555 A TRP 125 A TRP 103 8 1_555 A GLY 152 A GLY 130 8 8_545 A ARG 156 A ARG 134 8 8_545 A TRP 170 A TRP 148 8 1_555 A ARG 174 A ARG 152 8 1_555 A HOH 206 C HOH 8 8_545 A HOH 207 C HOH 8 1_555 179 P 65 2 2