0.020318 0.000000 0.000000 0.000000 0.013212 0.000000 0.000000 0.000000 0.025462 0.00000 0.00000 0.00000 Tanaka, Y. Suenaga, A. Tsumoto, K. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 49.217 75.686 39.274 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C34 H32 Fe N4 O4 616.487 PROTOPORPHYRIN IX CONTAINING FE HEME non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N C N 124 N C N 125 N C N 126 N C Y 127 N C Y 128 N C Y 129 N C Y 130 N C N 131 N C N 132 N C N 133 N C N 134 N C N 135 N O N 136 N O N 137 N C N 138 N C N 139 N C N 140 N C N 141 N C N 142 N C N 143 N C Y 144 N C Y 145 N C Y 146 N C Y 147 N C N 148 N C N 149 N C N 150 N C N 151 N C N 152 N C N 153 N C N 154 N C N 155 N C N 156 N C N 157 N C N 158 N C N 159 N O N 160 N O Y 161 N N N 162 N N Y 163 N N N 164 N N N 165 N FE N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N N N 199 S C N 200 N C N 201 N O N 202 N C Y 203 N C Y 204 N N Y 205 N C Y 206 N C Y 207 N N N 208 N O N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N O N 220 N H N 221 N H N 222 N N N 223 S C N 224 N C N 225 N O N 226 S C N 227 N C N 228 N C N 229 N C N 230 N O N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N N N 245 S C N 246 N C N 247 N O N 248 N C N 249 N C N 250 N C N 251 N C N 252 N O N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N N N 267 S C N 268 N C N 269 N O N 270 N C N 271 N C N 272 N C N 273 N C N 274 N N N 275 N O N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C N 296 N C N 297 N S N 298 N C N 299 N O N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N N N 312 S C N 313 N C N 314 N O N 315 N C Y 316 N C Y 317 N C Y 318 N C Y 319 N C Y 320 N C Y 321 N C N 322 N O N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N N N 335 S C N 336 N C N 337 N O N 338 N C N 339 N C N 340 N C N 341 N O N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N N N 352 S C N 353 N C N 354 N O N 355 N C N 356 N O N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N N N 366 S C N 367 N C N 368 N O N 369 R C N 370 N O N 371 N C N 372 N O N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N N N 383 S C N 384 N C N 385 N O N 386 N C Y 387 N C Y 388 N C Y 389 N C Y 390 N N Y 391 N C Y 392 N C Y 393 N C Y 394 N C Y 395 N C N 396 N O N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N N N 410 S C N 411 N C N 412 N O N 413 N C Y 414 N C Y 415 N C Y 416 N C Y 417 N C Y 418 N C Y 419 N C N 420 N O N 421 N O N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N N N 434 S C N 435 N C N 436 N O N 437 N C N 438 N C N 439 N C N 440 N O N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N doub N 126 N sing N 127 N sing Y 128 N doub Y 129 N sing Y 130 N sing N 131 N sing Y 132 N doub N 133 N sing Y 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N doub N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing Y 160 N sing Y 161 N sing Y 162 N doub N 163 N sing Y 164 N sing N 165 N sing Y 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N doub N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N doub N 176 N doub N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N doub N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N doub N 205 N sing N 206 N sing N 207 N sing N 208 N sing Y 209 N sing Y 210 N doub Y 211 N doub N 212 N sing Y 213 N sing N 214 N sing Y 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N doub N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N doub N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N doub N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub N 322 N sing Y 323 N doub N 324 N sing Y 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N doub N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N doub N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N doub N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N doub N 382 N sing N 383 N sing N 384 N sing N 385 N sing Y 386 N doub Y 387 N sing Y 388 N sing N 389 N sing Y 390 N doub Y 391 N sing Y 392 N sing N 393 N sing Y 394 N sing Y 395 N doub N 396 N sing Y 397 N doub N 398 N sing Y 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N doub N 410 N sing N 411 N sing N 412 N sing N 413 N sing Y 414 N doub Y 415 N sing Y 416 N sing N 417 N sing Y 418 N doub N 419 N sing Y 420 N doub N 421 N sing Y 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N doub N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 283 28649 28659 10.1074/jbc.M803383200 18667422 Structural basis for multimeric heme complexation through a specific protein-heme interaction: the case of the third neat domain of IsdH from Staphylococcus aureus 2008 10.2210/pdb2z6f/pdb pdb_00002z6f 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2007-03-16 ADSC QUANTUM 210 SINGLE WAVELENGTH M x-ray 1 1.00000 1.0 AR-NW12A Photon Factory 1.00000 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 14854.489 Iron-regulated surface determinant protein H NEAT 3 domain, residue 539-664 1 man polymer 616.487 PROTOPORPHYRIN IX CONTAINING FE 1 syn non-polymer 18.015 water 88 nat water Haptoglobin receptor A, Staphylococcus aureus surface protein I no no GSAMAPTNDQLTDLQEAHFVVFESEENSESVMDGFVEHPFYTATLNGQKYVVMKTKDDSYWKDLIVEGKRVTTVSKDPKN NSRTLIFPYIPDKAVYNAIVKVVVANIGYEGQYHVRIINQDINTKDDDTSQ GSAMAPTNDQLTDLQEAHFVVFESEENSESVMDGFVEHPFYTATLNGQKYVVMKTKDDSYWKDLIVEGKRVTTVSKDPKN NSRTLIFPYIPDKAVYNAIVKVVVANIGYEGQYHVRIINQDINTKDDDTSQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Mu50 sample isdH 158878 Staphylococcus aureus 469008 Escherichia coli BL21(DE3) plasmid pDBHT3 1 2.46 50.04 VAPOR DIFFUSION, SITTING DROP 10.5 100mM CAPS, 20% polyethylene glycol 8000, 200mM NaCl, pH 10.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K 293 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif repository Initial release Version format compliance Data collection Database references Refinement description 1 0 2008-07-29 1 1 2011-07-13 1 2 2023-11-01 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details Crystal structure of the protein in apo form Crystal structure of the protein which has a similar motif Crystal structure of the protein which has a similar motif Crystal structure of the protein which has a similar motif Solution structure of the protein which has a similar motif Crystal structure of the protein which has a similar motif PDBJ Y PDBJ 2007-07-31 REL REL HEM PROTOPORPHYRIN IX CONTAINING FE HOH water 2E7D PDB ENTRY 2E7D PDB experimental model HEM 3747 2 HEM HEM 3747 A HOH 1 3 HOH HOH 1 A HOH 2 3 HOH HOH 2 A HOH 3 3 HOH HOH 3 A HOH 4 3 HOH HOH 4 A HOH 5 3 HOH HOH 5 A HOH 6 3 HOH HOH 6 A HOH 7 3 HOH HOH 7 A HOH 8 3 HOH HOH 8 A HOH 9 3 HOH HOH 9 A HOH 10 3 HOH HOH 10 A HOH 11 3 HOH HOH 11 A HOH 12 3 HOH HOH 12 A HOH 13 3 HOH HOH 13 A HOH 14 3 HOH HOH 14 A HOH 15 3 HOH HOH 15 A HOH 16 3 HOH HOH 16 A HOH 17 3 HOH HOH 17 A HOH 18 3 HOH HOH 18 A HOH 19 3 HOH HOH 19 A HOH 20 3 HOH HOH 20 A HOH 23 3 HOH HOH 23 A HOH 24 3 HOH HOH 24 A HOH 25 3 HOH HOH 25 A HOH 26 3 HOH HOH 26 A HOH 27 3 HOH HOH 27 A HOH 29 3 HOH HOH 29 A HOH 30 3 HOH HOH 30 A HOH 31 3 HOH HOH 31 A HOH 33 3 HOH HOH 33 A HOH 34 3 HOH HOH 34 A HOH 35 3 HOH HOH 35 A HOH 36 3 HOH HOH 36 A HOH 37 3 HOH HOH 37 A HOH 38 3 HOH HOH 38 A HOH 39 3 HOH HOH 39 A HOH 40 3 HOH HOH 40 A HOH 41 3 HOH HOH 41 A HOH 42 3 HOH HOH 42 A HOH 44 3 HOH HOH 44 A HOH 45 3 HOH HOH 45 A HOH 46 3 HOH HOH 46 A HOH 47 3 HOH HOH 47 A HOH 49 3 HOH HOH 49 A HOH 50 3 HOH HOH 50 A HOH 51 3 HOH HOH 51 A HOH 52 3 HOH HOH 52 A HOH 53 3 HOH HOH 53 A HOH 56 3 HOH HOH 56 A HOH 58 3 HOH HOH 58 A HOH 59 3 HOH HOH 59 A HOH 60 3 HOH HOH 60 A HOH 61 3 HOH HOH 61 A HOH 62 3 HOH HOH 62 A HOH 63 3 HOH HOH 63 A HOH 64 3 HOH HOH 64 A HOH 65 3 HOH HOH 65 A HOH 66 3 HOH HOH 66 A HOH 67 3 HOH HOH 67 A HOH 68 3 HOH HOH 68 A HOH 69 3 HOH HOH 69 A HOH 71 3 HOH HOH 71 A HOH 72 3 HOH HOH 72 A HOH 75 3 HOH HOH 75 A HOH 76 3 HOH HOH 76 A HOH 78 3 HOH HOH 78 A HOH 79 3 HOH HOH 79 A HOH 80 3 HOH HOH 80 A HOH 82 3 HOH HOH 82 A HOH 83 3 HOH HOH 83 A HOH 85 3 HOH HOH 85 A HOH 86 3 HOH HOH 86 A HOH 87 3 HOH HOH 87 A HOH 89 3 HOH HOH 89 A HOH 90 3 HOH HOH 90 A HOH 92 3 HOH HOH 92 A HOH 93 3 HOH HOH 93 A HOH 94 3 HOH HOH 94 A HOH 95 3 HOH HOH 95 A HOH 96 3 HOH HOH 96 A HOH 98 3 HOH HOH 98 A HOH 100 3 HOH HOH 100 A HOH 102 3 HOH HOH 102 A HOH 103 3 HOH HOH 103 A HOH 104 3 HOH HOH 104 A HOH 105 3 HOH HOH 105 A HOH 106 3 HOH HOH 106 A HOH 107 3 HOH HOH 107 A HOH 108 3 HOH HOH 108 A n 1 534 A n 2 535 A n 3 536 A n 4 537 A n 5 538 A n 6 539 A n 7 540 A n 8 541 A n 9 542 A n 10 543 A LEU 544 n 11 LEU 544 A THR 545 n 12 THR 545 A ASP 546 n 13 ASP 546 A LEU 547 n 14 LEU 547 A GLN 548 n 15 GLN 548 A GLU 549 n 16 GLU 549 A ALA 550 n 17 ALA 550 A HIS 551 n 18 HIS 551 A PHE 552 n 19 PHE 552 A VAL 553 n 20 VAL 553 A VAL 554 n 21 VAL 554 A PHE 555 n 22 PHE 555 A GLU 556 n 23 GLU 556 A SER 557 n 24 SER 557 A GLU 558 n 25 GLU 558 A GLU 559 n 26 GLU 559 A ASN 560 n 27 ASN 560 A SER 561 n 28 SER 561 A GLU 562 n 29 GLU 562 A SER 563 n 30 SER 563 A VAL 564 n 31 VAL 564 A MET 565 n 32 MET 565 A ASP 566 n 33 ASP 566 A GLY 567 n 34 GLY 567 A PHE 568 n 35 PHE 568 A VAL 569 n 36 VAL 569 A GLU 570 n 37 GLU 570 A HIS 571 n 38 HIS 571 A PRO 572 n 39 PRO 572 A PHE 573 n 40 PHE 573 A TYR 574 n 41 TYR 574 A THR 575 n 42 THR 575 A ALA 576 n 43 ALA 576 A THR 577 n 44 THR 577 A LEU 578 n 45 LEU 578 A ASN 579 n 46 ASN 579 A GLY 580 n 47 GLY 580 A GLN 581 n 48 GLN 581 A LYS 582 n 49 LYS 582 A TYR 583 n 50 TYR 583 A VAL 584 n 51 VAL 584 A VAL 585 n 52 VAL 585 A MET 586 n 53 MET 586 A LYS 587 n 54 LYS 587 A THR 588 n 55 THR 588 A LYS 589 n 56 LYS 589 A ASP 590 n 57 ASP 590 A ASP 591 n 58 ASP 591 A SER 592 n 59 SER 592 A TYR 593 n 60 TYR 593 A TRP 594 n 61 TRP 594 A LYS 595 n 62 LYS 595 A ASP 596 n 63 ASP 596 A LEU 597 n 64 LEU 597 A ILE 598 n 65 ILE 598 A VAL 599 n 66 VAL 599 A GLU 600 n 67 GLU 600 A GLY 601 n 68 GLY 601 A LYS 602 n 69 LYS 602 A ARG 603 n 70 ARG 603 A VAL 604 n 71 VAL 604 A THR 605 n 72 THR 605 A THR 606 n 73 THR 606 A VAL 607 n 74 VAL 607 A SER 608 n 75 SER 608 A LYS 609 n 76 LYS 609 A ASP 610 n 77 ASP 610 A PRO 611 n 78 PRO 611 A LYS 612 n 79 LYS 612 A ASN 613 n 80 ASN 613 A ASN 614 n 81 ASN 614 A SER 615 n 82 SER 615 A ARG 616 n 83 ARG 616 A THR 617 n 84 THR 617 A LEU 618 n 85 LEU 618 A ILE 619 n 86 ILE 619 A PHE 620 n 87 PHE 620 A PRO 621 n 88 PRO 621 A TYR 622 n 89 TYR 622 A ILE 623 n 90 ILE 623 A PRO 624 n 91 PRO 624 A ASP 625 n 92 ASP 625 A LYS 626 n 93 LYS 626 A ALA 627 n 94 ALA 627 A VAL 628 n 95 VAL 628 A TYR 629 n 96 TYR 629 A ASN 630 n 97 ASN 630 A ALA 631 n 98 ALA 631 A ILE 632 n 99 ILE 632 A VAL 633 n 100 VAL 633 A LYS 634 n 101 LYS 634 A VAL 635 n 102 VAL 635 A VAL 636 n 103 VAL 636 A VAL 637 n 104 VAL 637 A ALA 638 n 105 ALA 638 A ASN 639 n 106 ASN 639 A ILE 640 n 107 ILE 640 A GLY 641 n 108 GLY 641 A TYR 642 n 109 TYR 642 A GLU 643 n 110 GLU 643 A GLY 644 n 111 GLY 644 A GLN 645 n 112 GLN 645 A TYR 646 n 113 TYR 646 A HIS 647 n 114 HIS 647 A VAL 648 n 115 VAL 648 A ARG 649 n 116 ARG 649 A ILE 650 n 117 ILE 650 A ILE 651 n 118 ILE 651 A ASN 652 n 119 ASN 652 A GLN 653 n 120 GLN 653 A ASP 654 n 121 ASP 654 A ILE 655 n 122 ILE 655 A n 123 656 A n 124 657 A n 125 658 A n 126 659 A n 127 660 A n 128 661 A n 129 662 A n 130 663 A n 131 664 A software_defined_assembly PISA 2 dimeric 2970 -45 12060 A TYR 642 A OH TYR 109 1_555 A HEM 3747 B FE HEM 1_555 A HEM 3747 B NA HEM 1_555 93.8 A TYR 642 A OH TYR 109 1_555 A HEM 3747 B FE HEM 1_555 A HEM 3747 B NB HEM 1_555 95.6 A HEM 3747 B NA HEM 1_555 A HEM 3747 B FE HEM 1_555 A HEM 3747 B NB HEM 1_555 91.4 A TYR 642 A OH TYR 109 1_555 A HEM 3747 B FE HEM 1_555 A HEM 3747 B NC HEM 1_555 100.1 A HEM 3747 B NA HEM 1_555 A HEM 3747 B FE HEM 1_555 A HEM 3747 B NC HEM 1_555 166.1 A HEM 3747 B NB HEM 1_555 A HEM 3747 B FE HEM 1_555 A HEM 3747 B NC HEM 1_555 87.2 A TYR 642 A OH TYR 109 1_555 A HEM 3747 B FE HEM 1_555 A HEM 3747 B ND HEM 1_555 99.3 A HEM 3747 B NA HEM 1_555 A HEM 3747 B FE HEM 1_555 A HEM 3747 B ND HEM 1_555 83.3 A HEM 3747 B NB HEM 1_555 A HEM 3747 B FE HEM 1_555 A HEM 3747 B ND HEM 1_555 164.4 A HEM 3747 B NC HEM 1_555 A HEM 3747 B FE HEM 1_555 A HEM 3747 B ND HEM 1_555 94.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_555 -x,-y,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A N THR 545 A N THR 12 A O THR 577 A O THR 44 A N TYR 574 A N TYR 41 A O VAL 585 A O VAL 52 A N VAL 584 A N VAL 51 A O PHE 620 A O PHE 87 A O SER 615 A O SER 82 A N ASP 610 A N ASP 77 A N PHE 555 A N PHE 22 A O ARG 649 A O ARG 116 A O ILE 650 A O ILE 117 A N TYR 629 A N TYR 96 A O LYS 634 A O LYS 101 A N LYS 595 A N LYS 62 A N VAL 599 A N VAL 66 A O LYS 602 A O LYS 69 1 A GLY 534 A GLY 1 1 Y 1 A SER 535 A SER 2 1 Y 1 A ALA 536 A ALA 3 1 Y 1 A MET 537 A MET 4 1 Y 1 A ALA 538 A ALA 5 1 Y 1 A PRO 539 A PRO 6 1 Y 1 A THR 540 A THR 7 1 Y 1 A ASN 541 A ASN 8 1 Y 1 A ASP 542 A ASP 9 1 Y 1 A GLN 543 A GLN 10 1 Y 1 A ASN 656 A ASN 123 1 Y 1 A THR 657 A THR 124 1 Y 1 A LYS 658 A LYS 125 1 Y 1 A ASP 659 A ASP 126 1 Y 1 A ASP 660 A ASP 127 1 Y 1 A ASP 661 A ASP 128 1 Y 1 A THR 662 A THR 129 1 Y 1 A SER 663 A SER 130 1 Y 1 A GLN 664 A GLN 131 1 Y 1 A A OD2 O ASP HOH 596 52 1.85 1 A A OE1 O GLU HOH 562 51 2.19 1 A ASN 614 38.27 56.37 20.495 0.00 0.00 0.00 0.00 0.00 0.00 0.945 0.920 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.24175 0.19279 0.19747 1.90 17.62 1168 10756 9.8 98.46 2.959 0.089 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.151 0.148 0.80 0.80 1.20 PDB ENTRY 2E7D MAXIMUM LIKELIHOOD MASK 1.90 17.62 88 1039 43 0 908 0.016 0.022 978 1.750 2.077 1342 6.482 5.000 111 37.959 25.217 46 15.924 15.000 160 26.220 15.000 3 0.114 0.200 142 0.007 0.020 746 0.209 0.200 409 0.308 0.200 658 0.186 0.200 88 0.204 0.200 31 0.121 0.200 7 1.198 1.500 572 1.694 2.000 915 2.847 3.000 465 4.530 4.500 425 0.303 0.231 1.947 87 682 20 89.00 1.9 50 2Z6F 11976 0.069 1 6.8 98.6 1.90 1.97 0.285 5.9 90.5 refinement REFMAC 5.2.0019 data collection HKL-2000 data reduction HKL-2000 data scaling HKL-2000 phasing MOLREP Crystal structure of NEAT domain from Staphylococcus aureus in complex with heme 1 N N 2 N N 3 N N THE BIOLOGICAL MOLECULE FOR THE PROTEIN IS UNKNOWN. Although the asymmetrically related two molecules seems to be a stable dimer, the structure is one of the domain among three. A SER 563 A SER 30 HELX_P A PHE 568 A PHE 35 1 1 6 A ASP 590 A ASP 57 HELX_P A SER 592 A SER 59 5 2 3 A PRO 611 A PRO 78 HELX_P A ASN 614 A ASN 81 5 3 4 A ALA 638 A ALA 105 HELX_P A GLY 641 A GLY 108 5 4 4 metalc 2.209 A TYR 642 A OH TYR 109 1_555 A HEM 3747 B FE HEM 1_555 HEME BINDING PROTEIN IgG-like fold, Cell wall, Peptidoglycan-anchor, Secreted, HEME BINDING PROTEIN A HIS 571 A HIS 38 1 A PRO 572 A PRO 39 -0.41 ISDH_STAAM UNP 1 539 Q931P4 PTNDQLTDLQEAHFVVFESEENSESVMDGFVEHPFYTATLNGQKYVVMKTKDDSYWKDLIVEGKRVTTVSKDPKNNSRTL IFPYIPDKAVYNAIVKVVVANIGYEGQYHVRIINQDINTKDDDTSQ 539 664 2Z6F 539 664 Q931P4 A 1 6 131 1 expression tag GLY 534 2Z6F A Q931P4 UNP 1 1 expression tag SER 535 2Z6F A Q931P4 UNP 2 1 expression tag ALA 536 2Z6F A Q931P4 UNP 3 1 expression tag MET 537 2Z6F A Q931P4 UNP 4 1 expression tag ALA 538 2Z6F A Q931P4 UNP 5 5 5 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A THR 545 A THR 12 A ALA 550 A ALA 17 A PHE 573 A PHE 40 A LEU 578 A LEU 45 A GLN 581 A GLN 48 A LYS 587 A LYS 54 A SER 615 A SER 82 A PRO 621 A PRO 88 A THR 605 A THR 72 A ASP 610 A ASP 77 A PHE 552 A PHE 19 A GLU 556 A GLU 23 A TYR 642 A TYR 109 A ASN 652 A ASN 119 A VAL 628 A VAL 95 A VAL 637 A VAL 104 A TRP 594 A TRP 61 A VAL 599 A VAL 66 A LYS 602 A LYS 69 A ARG 603 A ARG 70 BINDING SITE FOR RESIDUE HEM A3747 Software 12 A HOH 2 C HOH 12 1_555 A HOH 33 C HOH 12 1_555 A HOH 76 C HOH 12 1_555 A SER 563 A SER 30 12 1_555 A VAL 564 A VAL 31 12 2_555 A PHE 568 A PHE 35 12 1_555 A TRP 594 A TRP 61 12 1_555 A VAL 635 A VAL 102 12 1_555 A ILE 640 A ILE 107 12 1_555 A TYR 642 A TYR 109 12 1_555 A TYR 646 A TYR 113 12 1_555 A VAL 648 A VAL 115 12 1_555 18 P 21 21 2