0.008900
0.000000
0.003278
0.000000
0.016102
0.000000
0.000000
0.000000
0.019739
0.00000
0.00000
0.00000
Kuwada, T.
Hasegawa, T.
Sato, I.
Ishikawa, K.
Shishikura, F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
110.22
90.00
112.355
62.104
53.987
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C O
28.010
CARBON MONOXIDE
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C34 H32 Fe N4 O4
616.487
PROTOPORPHYRIN IX CONTAINING FE
HEME
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
C
N
75
N
O
N
76
N
N
N
77
R
C
N
78
N
C
N
79
N
O
N
80
N
C
N
81
N
S
N
82
N
O
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
N
N
91
S
C
N
92
N
C
N
93
N
O
N
94
N
C
N
95
N
C
N
96
N
C
N
97
N
O
N
98
N
N
N
99
N
O
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
N
N
111
S
C
N
112
N
C
N
113
N
O
N
114
N
C
N
115
N
C
N
116
N
C
N
117
N
O
N
118
N
O
N
119
N
O
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
N
N
130
N
C
N
131
N
C
N
132
N
O
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
C
N
140
N
C
N
141
N
C
N
142
N
C
Y
143
N
C
Y
144
N
C
Y
145
N
C
Y
146
N
C
N
147
N
C
N
148
N
C
N
149
N
C
N
150
N
C
N
151
N
O
N
152
N
O
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
C
N
158
N
C
N
159
N
C
Y
160
N
C
Y
161
N
C
Y
162
N
C
Y
163
N
C
N
164
N
C
N
165
N
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
C
N
171
N
C
N
172
N
C
N
173
N
C
N
174
N
C
N
175
N
O
N
176
N
O
Y
177
N
N
N
178
N
N
Y
179
N
N
N
180
N
N
N
181
N
FE
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
N
N
215
S
C
N
216
N
C
N
217
N
O
N
218
N
C
Y
219
N
C
Y
220
N
N
Y
221
N
C
Y
222
N
C
Y
223
N
N
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
N
N
239
S
C
N
240
N
C
N
241
N
O
N
242
S
C
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
N
N
261
S
C
N
262
N
C
N
263
N
O
N
264
N
C
N
265
N
C
N
266
N
C
N
267
N
C
N
268
N
O
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
N
N
283
S
C
N
284
N
C
N
285
N
O
N
286
N
C
N
287
N
C
N
288
N
C
N
289
N
C
N
290
N
N
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
N
312
N
C
N
313
N
S
N
314
N
C
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
N
C
N
355
N
C
N
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
N
N
368
S
C
N
369
N
C
N
370
N
O
N
371
N
C
N
372
N
O
N
373
N
O
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
N
N
382
S
C
N
383
N
C
N
384
N
O
N
385
R
C
N
386
N
O
N
387
N
C
N
388
N
O
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
N
N
399
S
C
N
400
N
C
N
401
N
O
N
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
N
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
N
412
N
O
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
N
N
426
S
C
N
427
N
C
N
428
N
O
N
429
N
C
Y
430
N
C
Y
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
C
N
436
N
O
N
437
N
O
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
N
N
450
S
C
N
451
N
C
N
452
N
O
N
453
N
C
N
454
N
C
N
455
N
C
N
456
N
O
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
trip
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
doub
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
doub
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
Y
142
N
doub
Y
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
doub
N
147
N
sing
Y
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
Y
174
N
sing
Y
175
N
sing
Y
176
N
doub
N
177
N
sing
Y
178
N
sing
N
179
N
sing
Y
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
doub
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
Y
223
N
sing
Y
224
N
doub
Y
225
N
doub
N
226
N
sing
Y
227
N
sing
N
228
N
sing
Y
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
Y
331
N
doub
Y
332
N
sing
Y
333
N
sing
N
334
N
sing
Y
335
N
doub
N
336
N
sing
Y
337
N
doub
N
338
N
sing
Y
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
doub
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
doub
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
Y
400
N
doub
Y
401
N
sing
Y
402
N
sing
N
403
N
sing
Y
404
N
doub
Y
405
N
sing
Y
406
N
sing
N
407
N
sing
Y
408
N
sing
Y
409
N
doub
N
410
N
sing
Y
411
N
doub
N
412
N
sing
Y
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
doub
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
Y
428
N
doub
Y
429
N
sing
Y
430
N
sing
N
431
N
sing
Y
432
N
doub
N
433
N
sing
Y
434
N
doub
N
435
N
sing
Y
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
doub
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
To be Published
0353
Crystal Structure of the Ligated Hemoglobin D from the Aldabra Giant Tortoise, Geochelone gigantea
10.2210/pdb2z6n/pdb
pdb_00002z6n
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
2005-06-08
RIGAKU RAXIS IV++
confocal
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU ULTRAX 18
16190.386
Hemoglobin D subunit alpha
1
nat
polymer
16194.624
Hemoglobin A/D subunit beta
1
nat
polymer
616.487
PROTOPORPHYRIN IX CONTAINING FE
2
syn
non-polymer
28.010
CARBON MONOXIDE
2
syn
non-polymer
18.015
water
385
nat
water
Hemoglobin D alpha chain
Hemoglobin A/D beta chain
no
no
MLTEDDKQLIQHVWEKVLEHQEDFGAEALERMFIVYPSTKTYFPHFDLHHDSEQIRHHGKKVVGALGDAVKHIDNLSATL
SELSNLHAYNLRVDPVNFKLLSHCFQVVLGAHLGREYTPQVQVAYDKFLAAVSAVLAEKYR
MLTEDDKQLIQHVWEKVLEHQEDFGAEALERMFIVYPSTKTYFPHFDLHHDSEQIRHHGKKVVGALGDAVKHIDNLSATL
SELSNLHAYNLRVDPVNFKLLSHCFQVVLGAHLGREYTPQVQVAYDKFLAAVSAVLAEKYR
A
polypeptide(L)
no
no
VHWTSEEKQYITSLWAKVNVGEVGGEALARLLIVYPWTQRFFASFGNLSSANAILHNAKVLAHGQKVLTSFGEAVKNLDN
IKKTFAQLSELHCEKLHVDPENFKLLGNILIIVLATHFPKEFTPASQAAWTKLVNAVAHALALGYH
VHWTSEEKQYITSLWAKVNVGEVGGEALARLLIVYPWTQRFFASFGNLSSANAILHNAKVLAHGQKVLTSFGEAVKNLDN
IKKTFAQLSELHCEKLHVDPENFKLLGNILIIVLATHFPKEFTPASQAAWTKLVNAVAHALALGYH
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Aldabra giant tortoise
Dipsochelys
sample
167804
Dipsochelys dussumieri
red blood cell
Aldabra giant tortoise
Dipsochelys
sample
167804
Dipsochelys dussumieri
red blood cell
1
2.73
54.92
VAPOR DIFFUSION, HANGING DROP
7.5
7% PEG 3350, 50mM HEPES-Na, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
citation_author
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Version format compliance
Data collection
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2007-08-28
1
1
2011-07-13
1
2
2018-06-20
1
3
2023-11-01
_citation_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
The same hemoglobin component in the aquomet form
The same hemoglobin component in the aquomet form
PDBJ
Y
PDBJ
2007-08-04
REL
REL
HEM
PROTOPORPHYRIN IX CONTAINING FE
CMO
CARBON MONOXIDE
HOH
water
1V75
PDB ENTRY 1V75
PDB
experimental model
HEM
150
3
HEM
HEM
150
A
CMO
151
4
CMO
CMO
151
A
HEM
150
3
HEM
HEM
150
B
CMO
151
4
CMO
CMO
151
B
HOH
6
5
HOH
HOH
152
A
HOH
7
5
HOH
HOH
153
A
HOH
15
5
HOH
HOH
154
A
HOH
16
5
HOH
HOH
155
A
HOH
19
5
HOH
HOH
156
A
HOH
20
5
HOH
HOH
157
A
HOH
21
5
HOH
HOH
158
A
HOH
24
5
HOH
HOH
159
A
HOH
26
5
HOH
HOH
160
A
HOH
32
5
HOH
HOH
161
A
HOH
36
5
HOH
HOH
162
A
HOH
39
5
HOH
HOH
163
A
HOH
41
5
HOH
HOH
164
A
HOH
42
5
HOH
HOH
165
A
HOH
45
5
HOH
HOH
166
A
HOH
49
5
HOH
HOH
167
A
HOH
50
5
HOH
HOH
168
A
HOH
51
5
HOH
HOH
169
A
HOH
52
5
HOH
HOH
170
A
HOH
53
5
HOH
HOH
171
A
HOH
54
5
HOH
HOH
172
A
HOH
61
5
HOH
HOH
173
A
HOH
63
5
HOH
HOH
174
A
HOH
78
5
HOH
HOH
175
A
HOH
81
5
HOH
HOH
176
A
HOH
83
5
HOH
HOH
177
A
HOH
84
5
HOH
HOH
178
A
HOH
87
5
HOH
HOH
179
A
HOH
88
5
HOH
HOH
180
A
HOH
89
5
HOH
HOH
181
A
HOH
92
5
HOH
HOH
182
A
HOH
98
5
HOH
HOH
183
A
HOH
99
5
HOH
HOH
184
A
HOH
100
5
HOH
HOH
185
A
HOH
101
5
HOH
HOH
186
A
HOH
102
5
HOH
HOH
187
A
HOH
103
5
HOH
HOH
188
A
HOH
104
5
HOH
HOH
189
A
HOH
110
5
HOH
HOH
190
A
HOH
111
5
HOH
HOH
191
A
HOH
113
5
HOH
HOH
192
A
HOH
115
5
HOH
HOH
193
A
HOH
116
5
HOH
HOH
194
A
HOH
120
5
HOH
HOH
195
A
HOH
123
5
HOH
HOH
196
A
HOH
125
5
HOH
HOH
197
A
HOH
132
5
HOH
HOH
198
A
HOH
133
5
HOH
HOH
199
A
HOH
136
5
HOH
HOH
200
A
HOH
137
5
HOH
HOH
201
A
HOH
142
5
HOH
HOH
202
A
HOH
144
5
HOH
HOH
203
A
HOH
145
5
HOH
HOH
204
A
HOH
148
5
HOH
HOH
205
A
HOH
149
5
HOH
HOH
206
A
HOH
150
5
HOH
HOH
207
A
HOH
151
5
HOH
HOH
208
A
HOH
152
5
HOH
HOH
209
A
HOH
153
5
HOH
HOH
210
A
HOH
154
5
HOH
HOH
211
A
HOH
158
5
HOH
HOH
212
A
HOH
160
5
HOH
HOH
213
A
HOH
161
5
HOH
HOH
214
A
HOH
167
5
HOH
HOH
215
A
HOH
168
5
HOH
HOH
216
A
HOH
169
5
HOH
HOH
217
A
HOH
174
5
HOH
HOH
218
A
HOH
179
5
HOH
HOH
219
A
HOH
182
5
HOH
HOH
220
A
HOH
184
5
HOH
HOH
221
A
HOH
191
5
HOH
HOH
222
A
HOH
192
5
HOH
HOH
223
A
HOH
194
5
HOH
HOH
224
A
HOH
195
5
HOH
HOH
225
A
HOH
197
5
HOH
HOH
226
A
HOH
204
5
HOH
HOH
227
A
HOH
206
5
HOH
HOH
228
A
HOH
211
5
HOH
HOH
229
A
HOH
213
5
HOH
HOH
230
A
HOH
216
5
HOH
HOH
231
A
HOH
217
5
HOH
HOH
232
A
HOH
218
5
HOH
HOH
233
A
HOH
220
5
HOH
HOH
234
A
HOH
223
5
HOH
HOH
235
A
HOH
227
5
HOH
HOH
236
A
HOH
229
5
HOH
HOH
237
A
HOH
235
5
HOH
HOH
238
A
HOH
239
5
HOH
HOH
239
A
HOH
240
5
HOH
HOH
240
A
HOH
243
5
HOH
HOH
241
A
HOH
244
5
HOH
HOH
242
A
HOH
245
5
HOH
HOH
243
A
HOH
247
5
HOH
HOH
244
A
HOH
253
5
HOH
HOH
245
A
HOH
256
5
HOH
HOH
246
A
HOH
258
5
HOH
HOH
247
A
HOH
259
5
HOH
HOH
248
A
HOH
260
5
HOH
HOH
249
A
HOH
261
5
HOH
HOH
250
A
HOH
262
5
HOH
HOH
251
A
HOH
263
5
HOH
HOH
252
A
HOH
265
5
HOH
HOH
253
A
HOH
267
5
HOH
HOH
254
A
HOH
270
5
HOH
HOH
255
A
HOH
271
5
HOH
HOH
256
A
HOH
277
5
HOH
HOH
257
A
HOH
280
5
HOH
HOH
258
A
HOH
283
5
HOH
HOH
259
A
HOH
285
5
HOH
HOH
260
A
HOH
286
5
HOH
HOH
261
A
HOH
288
5
HOH
HOH
262
A
HOH
294
5
HOH
HOH
263
A
HOH
295
5
HOH
HOH
264
A
HOH
299
5
HOH
HOH
265
A
HOH
302
5
HOH
HOH
266
A
HOH
303
5
HOH
HOH
267
A
HOH
304
5
HOH
HOH
268
A
HOH
307
5
HOH
HOH
269
A
HOH
312
5
HOH
HOH
270
A
HOH
313
5
HOH
HOH
271
A
HOH
314
5
HOH
HOH
272
A
HOH
319
5
HOH
HOH
273
A
HOH
321
5
HOH
HOH
274
A
HOH
322
5
HOH
HOH
275
A
HOH
323
5
HOH
HOH
276
A
HOH
324
5
HOH
HOH
277
A
HOH
326
5
HOH
HOH
278
A
HOH
327
5
HOH
HOH
279
A
HOH
328
5
HOH
HOH
280
A
HOH
329
5
HOH
HOH
281
A
HOH
330
5
HOH
HOH
282
A
HOH
335
5
HOH
HOH
283
A
HOH
336
5
HOH
HOH
284
A
HOH
337
5
HOH
HOH
285
A
HOH
343
5
HOH
HOH
286
A
HOH
344
5
HOH
HOH
287
A
HOH
346
5
HOH
HOH
288
A
HOH
347
5
HOH
HOH
289
A
HOH
350
5
HOH
HOH
290
A
HOH
351
5
HOH
HOH
291
A
HOH
353
5
HOH
HOH
292
A
HOH
354
5
HOH
HOH
293
A
HOH
356
5
HOH
HOH
294
A
HOH
357
5
HOH
HOH
295
A
HOH
358
5
HOH
HOH
296
A
HOH
360
5
HOH
HOH
297
A
HOH
361
5
HOH
HOH
298
A
HOH
363
5
HOH
HOH
299
A
HOH
364
5
HOH
HOH
300
A
HOH
365
5
HOH
HOH
301
A
HOH
366
5
HOH
HOH
302
A
HOH
367
5
HOH
HOH
303
A
HOH
369
5
HOH
HOH
304
A
HOH
370
5
HOH
HOH
305
A
HOH
373
5
HOH
HOH
306
A
HOH
374
5
HOH
HOH
307
A
HOH
381
5
HOH
HOH
308
A
HOH
383
5
HOH
HOH
309
A
HOH
384
5
HOH
HOH
310
A
HOH
1
5
HOH
HOH
152
B
HOH
2
5
HOH
HOH
153
B
HOH
3
5
HOH
HOH
154
B
HOH
4
5
HOH
HOH
155
B
HOH
5
5
HOH
HOH
156
B
HOH
8
5
HOH
HOH
157
B
HOH
9
5
HOH
HOH
158
B
HOH
10
5
HOH
HOH
159
B
HOH
11
5
HOH
HOH
160
B
HOH
12
5
HOH
HOH
161
B
HOH
13
5
HOH
HOH
162
B
HOH
14
5
HOH
HOH
163
B
HOH
17
5
HOH
HOH
164
B
HOH
18
5
HOH
HOH
165
B
HOH
22
5
HOH
HOH
166
B
HOH
23
5
HOH
HOH
167
B
HOH
25
5
HOH
HOH
168
B
HOH
27
5
HOH
HOH
169
B
HOH
28
5
HOH
HOH
170
B
HOH
29
5
HOH
HOH
171
B
HOH
30
5
HOH
HOH
172
B
HOH
31
5
HOH
HOH
173
B
HOH
33
5
HOH
HOH
174
B
HOH
34
5
HOH
HOH
175
B
HOH
35
5
HOH
HOH
176
B
HOH
37
5
HOH
HOH
177
B
HOH
38
5
HOH
HOH
178
B
HOH
40
5
HOH
HOH
179
B
HOH
43
5
HOH
HOH
180
B
HOH
44
5
HOH
HOH
181
B
HOH
46
5
HOH
HOH
182
B
HOH
47
5
HOH
HOH
183
B
HOH
48
5
HOH
HOH
184
B
HOH
55
5
HOH
HOH
185
B
HOH
56
5
HOH
HOH
186
B
HOH
57
5
HOH
HOH
187
B
HOH
58
5
HOH
HOH
188
B
HOH
59
5
HOH
HOH
189
B
HOH
60
5
HOH
HOH
190
B
HOH
62
5
HOH
HOH
191
B
HOH
64
5
HOH
HOH
192
B
HOH
65
5
HOH
HOH
193
B
HOH
66
5
HOH
HOH
194
B
HOH
67
5
HOH
HOH
195
B
HOH
68
5
HOH
HOH
196
B
HOH
69
5
HOH
HOH
197
B
HOH
70
5
HOH
HOH
198
B
HOH
71
5
HOH
HOH
199
B
HOH
72
5
HOH
HOH
200
B
HOH
73
5
HOH
HOH
201
B
HOH
74
5
HOH
HOH
202
B
HOH
75
5
HOH
HOH
203
B
HOH
76
5
HOH
HOH
204
B
HOH
77
5
HOH
HOH
205
B
HOH
79
5
HOH
HOH
206
B
HOH
80
5
HOH
HOH
207
B
HOH
82
5
HOH
HOH
208
B
HOH
85
5
HOH
HOH
209
B
HOH
86
5
HOH
HOH
210
B
HOH
90
5
HOH
HOH
211
B
HOH
91
5
HOH
HOH
212
B
HOH
93
5
HOH
HOH
213
B
HOH
94
5
HOH
HOH
214
B
HOH
95
5
HOH
HOH
215
B
HOH
96
5
HOH
HOH
216
B
HOH
97
5
HOH
HOH
217
B
HOH
105
5
HOH
HOH
218
B
HOH
106
5
HOH
HOH
219
B
HOH
107
5
HOH
HOH
220
B
HOH
108
5
HOH
HOH
221
B
HOH
109
5
HOH
HOH
222
B
HOH
112
5
HOH
HOH
223
B
HOH
114
5
HOH
HOH
224
B
HOH
117
5
HOH
HOH
225
B
HOH
118
5
HOH
HOH
226
B
HOH
119
5
HOH
HOH
227
B
HOH
121
5
HOH
HOH
228
B
HOH
122
5
HOH
HOH
229
B
HOH
124
5
HOH
HOH
230
B
HOH
126
5
HOH
HOH
231
B
HOH
127
5
HOH
HOH
232
B
HOH
128
5
HOH
HOH
233
B
HOH
129
5
HOH
HOH
234
B
HOH
130
5
HOH
HOH
235
B
HOH
131
5
HOH
HOH
236
B
HOH
134
5
HOH
HOH
237
B
HOH
135
5
HOH
HOH
238
B
HOH
138
5
HOH
HOH
239
B
HOH
139
5
HOH
HOH
240
B
HOH
140
5
HOH
HOH
241
B
HOH
141
5
HOH
HOH
242
B
HOH
143
5
HOH
HOH
243
B
HOH
146
5
HOH
HOH
244
B
HOH
147
5
HOH
HOH
245
B
HOH
155
5
HOH
HOH
246
B
HOH
156
5
HOH
HOH
247
B
HOH
157
5
HOH
HOH
248
B
HOH
159
5
HOH
HOH
249
B
HOH
162
5
HOH
HOH
250
B
HOH
163
5
HOH
HOH
251
B
HOH
164
5
HOH
HOH
252
B
HOH
165
5
HOH
HOH
253
B
HOH
166
5
HOH
HOH
254
B
HOH
170
5
HOH
HOH
255
B
HOH
171
5
HOH
HOH
256
B
HOH
172
5
HOH
HOH
257
B
HOH
173
5
HOH
HOH
258
B
HOH
175
5
HOH
HOH
259
B
HOH
176
5
HOH
HOH
260
B
HOH
177
5
HOH
HOH
261
B
HOH
178
5
HOH
HOH
262
B
HOH
180
5
HOH
HOH
263
B
HOH
181
5
HOH
HOH
264
B
HOH
183
5
HOH
HOH
265
B
HOH
185
5
HOH
HOH
266
B
HOH
186
5
HOH
HOH
267
B
HOH
187
5
HOH
HOH
268
B
HOH
188
5
HOH
HOH
269
B
HOH
189
5
HOH
HOH
270
B
HOH
190
5
HOH
HOH
271
B
HOH
193
5
HOH
HOH
272
B
HOH
196
5
HOH
HOH
273
B
HOH
198
5
HOH
HOH
274
B
HOH
199
5
HOH
HOH
275
B
HOH
200
5
HOH
HOH
276
B
HOH
201
5
HOH
HOH
277
B
HOH
202
5
HOH
HOH
278
B
HOH
203
5
HOH
HOH
279
B
HOH
205
5
HOH
HOH
280
B
HOH
207
5
HOH
HOH
281
B
HOH
208
5
HOH
HOH
282
B
HOH
209
5
HOH
HOH
283
B
HOH
210
5
HOH
HOH
284
B
HOH
212
5
HOH
HOH
285
B
HOH
214
5
HOH
HOH
286
B
HOH
215
5
HOH
HOH
287
B
HOH
219
5
HOH
HOH
288
B
HOH
221
5
HOH
HOH
289
B
HOH
222
5
HOH
HOH
290
B
HOH
224
5
HOH
HOH
291
B
HOH
225
5
HOH
HOH
292
B
HOH
226
5
HOH
HOH
293
B
HOH
228
5
HOH
HOH
294
B
HOH
230
5
HOH
HOH
295
B
HOH
231
5
HOH
HOH
296
B
HOH
232
5
HOH
HOH
297
B
HOH
233
5
HOH
HOH
298
B
HOH
234
5
HOH
HOH
299
B
HOH
236
5
HOH
HOH
300
B
HOH
237
5
HOH
HOH
301
B
HOH
238
5
HOH
HOH
302
B
HOH
241
5
HOH
HOH
303
B
HOH
242
5
HOH
HOH
304
B
HOH
246
5
HOH
HOH
305
B
HOH
248
5
HOH
HOH
306
B
HOH
249
5
HOH
HOH
307
B
HOH
250
5
HOH
HOH
308
B
HOH
251
5
HOH
HOH
309
B
HOH
252
5
HOH
HOH
310
B
HOH
254
5
HOH
HOH
311
B
HOH
255
5
HOH
HOH
312
B
HOH
257
5
HOH
HOH
313
B
HOH
264
5
HOH
HOH
314
B
HOH
266
5
HOH
HOH
315
B
HOH
268
5
HOH
HOH
316
B
HOH
269
5
HOH
HOH
317
B
HOH
272
5
HOH
HOH
318
B
HOH
273
5
HOH
HOH
319
B
HOH
274
5
HOH
HOH
320
B
HOH
275
5
HOH
HOH
321
B
HOH
276
5
HOH
HOH
322
B
HOH
278
5
HOH
HOH
323
B
HOH
279
5
HOH
HOH
324
B
HOH
281
5
HOH
HOH
325
B
HOH
282
5
HOH
HOH
326
B
HOH
284
5
HOH
HOH
327
B
HOH
287
5
HOH
HOH
328
B
HOH
289
5
HOH
HOH
329
B
HOH
290
5
HOH
HOH
330
B
HOH
291
5
HOH
HOH
331
B
HOH
292
5
HOH
HOH
332
B
HOH
293
5
HOH
HOH
333
B
HOH
296
5
HOH
HOH
334
B
HOH
297
5
HOH
HOH
335
B
HOH
298
5
HOH
HOH
336
B
HOH
300
5
HOH
HOH
337
B
HOH
301
5
HOH
HOH
338
B
HOH
305
5
HOH
HOH
339
B
HOH
306
5
HOH
HOH
340
B
HOH
308
5
HOH
HOH
341
B
HOH
309
5
HOH
HOH
342
B
HOH
310
5
HOH
HOH
343
B
HOH
311
5
HOH
HOH
344
B
HOH
315
5
HOH
HOH
345
B
HOH
316
5
HOH
HOH
346
B
HOH
317
5
HOH
HOH
347
B
HOH
318
5
HOH
HOH
348
B
HOH
320
5
HOH
HOH
349
B
HOH
325
5
HOH
HOH
350
B
HOH
331
5
HOH
HOH
351
B
HOH
332
5
HOH
HOH
352
B
HOH
333
5
HOH
HOH
353
B
HOH
334
5
HOH
HOH
354
B
HOH
338
5
HOH
HOH
355
B
HOH
339
5
HOH
HOH
356
B
HOH
340
5
HOH
HOH
357
B
HOH
341
5
HOH
HOH
358
B
HOH
342
5
HOH
HOH
359
B
HOH
345
5
HOH
HOH
360
B
HOH
348
5
HOH
HOH
361
B
HOH
349
5
HOH
HOH
362
B
HOH
352
5
HOH
HOH
363
B
HOH
355
5
HOH
HOH
364
B
HOH
359
5
HOH
HOH
365
B
HOH
362
5
HOH
HOH
366
B
HOH
368
5
HOH
HOH
367
B
HOH
371
5
HOH
HOH
368
B
HOH
372
5
HOH
HOH
369
B
HOH
375
5
HOH
HOH
370
B
HOH
376
5
HOH
HOH
371
B
HOH
377
5
HOH
HOH
372
B
HOH
378
5
HOH
HOH
373
B
HOH
379
5
HOH
HOH
374
B
HOH
380
5
HOH
HOH
375
B
HOH
382
5
HOH
HOH
376
B
HOH
385
5
HOH
HOH
377
B
MET
1
n
1
MET
1
A
LEU
2
n
2
LEU
2
A
THR
3
n
3
THR
3
A
GLU
4
n
4
GLU
4
A
ASP
5
n
5
ASP
5
A
ASP
6
n
6
ASP
6
A
LYS
7
n
7
LYS
7
A
GLN
8
n
8
GLN
8
A
LEU
9
n
9
LEU
9
A
ILE
10
n
10
ILE
10
A
GLN
11
n
11
GLN
11
A
HIS
12
n
12
HIS
12
A
VAL
13
n
13
VAL
13
A
TRP
14
n
14
TRP
14
A
GLU
15
n
15
GLU
15
A
LYS
16
n
16
LYS
16
A
VAL
17
n
17
VAL
17
A
LEU
18
n
18
LEU
18
A
GLU
19
n
19
GLU
19
A
HIS
20
n
20
HIS
20
A
GLN
21
n
21
GLN
21
A
GLU
22
n
22
GLU
22
A
ASP
23
n
23
ASP
23
A
PHE
24
n
24
PHE
24
A
GLY
25
n
25
GLY
25
A
ALA
26
n
26
ALA
26
A
GLU
27
n
27
GLU
27
A
ALA
28
n
28
ALA
28
A
LEU
29
n
29
LEU
29
A
GLU
30
n
30
GLU
30
A
ARG
31
n
31
ARG
31
A
MET
32
n
32
MET
32
A
PHE
33
n
33
PHE
33
A
ILE
34
n
34
ILE
34
A
VAL
35
n
35
VAL
35
A
TYR
36
n
36
TYR
36
A
PRO
37
n
37
PRO
37
A
SER
38
n
38
SER
38
A
THR
39
n
39
THR
39
A
LYS
40
n
40
LYS
40
A
THR
41
n
41
THR
41
A
TYR
42
n
42
TYR
42
A
PHE
43
n
43
PHE
43
A
PRO
44
n
44
PRO
44
A
HIS
45
n
45
HIS
45
A
PHE
46
n
46
PHE
46
A
ASP
47
n
47
ASP
47
A
LEU
48
n
48
LEU
48
A
HIS
49
n
49
HIS
49
A
HIS
50
n
50
HIS
50
A
ASP
51
n
51
ASP
51
A
SER
52
n
52
SER
52
A
GLU
53
n
53
GLU
53
A
GLN
54
n
54
GLN
54
A
ILE
55
n
55
ILE
55
A
ARG
56
n
56
ARG
56
A
HIS
57
n
57
HIS
57
A
HIS
58
n
58
HIS
58
A
GLY
59
n
59
GLY
59
A
LYS
60
n
60
LYS
60
A
LYS
61
n
61
LYS
61
A
VAL
62
n
62
VAL
62
A
VAL
63
n
63
VAL
63
A
GLY
64
n
64
GLY
64
A
ALA
65
n
65
ALA
65
A
LEU
66
n
66
LEU
66
A
GLY
67
n
67
GLY
67
A
ASP
68
n
68
ASP
68
A
ALA
69
n
69
ALA
69
A
VAL
70
n
70
VAL
70
A
LYS
71
n
71
LYS
71
A
HIS
72
n
72
HIS
72
A
ILE
73
n
73
ILE
73
A
ASP
74
n
74
ASP
74
A
ASN
75
n
75
ASN
75
A
LEU
76
n
76
LEU
76
A
SER
77
n
77
SER
77
A
ALA
78
n
78
ALA
78
A
THR
79
n
79
THR
79
A
LEU
80
n
80
LEU
80
A
SER
81
n
81
SER
81
A
GLU
82
n
82
GLU
82
A
LEU
83
n
83
LEU
83
A
SER
84
n
84
SER
84
A
ASN
85
n
85
ASN
85
A
LEU
86
n
86
LEU
86
A
HIS
87
n
87
HIS
87
A
ALA
88
n
88
ALA
88
A
TYR
89
n
89
TYR
89
A
ASN
90
n
90
ASN
90
A
LEU
91
n
91
LEU
91
A
ARG
92
n
92
ARG
92
A
VAL
93
n
93
VAL
93
A
ASP
94
n
94
ASP
94
A
PRO
95
n
95
PRO
95
A
VAL
96
n
96
VAL
96
A
ASN
97
n
97
ASN
97
A
PHE
98
n
98
PHE
98
A
LYS
99
n
99
LYS
99
A
LEU
100
n
100
LEU
100
A
LEU
101
n
101
LEU
101
A
SER
102
n
102
SER
102
A
HIS
103
n
103
HIS
103
A
CYS
104
n
104
CYS
104
A
PHE
105
n
105
PHE
105
A
GLN
106
n
106
GLN
106
A
VAL
107
n
107
VAL
107
A
VAL
108
n
108
VAL
108
A
LEU
109
n
109
LEU
109
A
GLY
110
n
110
GLY
110
A
ALA
111
n
111
ALA
111
A
HIS
112
n
112
HIS
112
A
LEU
113
n
113
LEU
113
A
GLY
114
n
114
GLY
114
A
ARG
115
n
115
ARG
115
A
GLU
116
n
116
GLU
116
A
TYR
117
n
117
TYR
117
A
THR
118
n
118
THR
118
A
PRO
119
n
119
PRO
119
A
GLN
120
n
120
GLN
120
A
VAL
121
n
121
VAL
121
A
GLN
122
n
122
GLN
122
A
VAL
123
n
123
VAL
123
A
ALA
124
n
124
ALA
124
A
TYR
125
n
125
TYR
125
A
ASP
126
n
126
ASP
126
A
LYS
127
n
127
LYS
127
A
PHE
128
n
128
PHE
128
A
LEU
129
n
129
LEU
129
A
ALA
130
n
130
ALA
130
A
ALA
131
n
131
ALA
131
A
VAL
132
n
132
VAL
132
A
SER
133
n
133
SER
133
A
ALA
134
n
134
ALA
134
A
VAL
135
n
135
VAL
135
A
LEU
136
n
136
LEU
136
A
ALA
137
n
137
ALA
137
A
GLU
138
n
138
GLU
138
A
LYS
139
n
139
LYS
139
A
TYR
140
n
140
TYR
140
A
ARG
141
n
141
ARG
141
A
VAL
1
n
1
VAL
1
B
HIS
2
n
2
HIS
2
B
TRP
3
n
3
TRP
3
B
THR
4
n
4
THR
4
B
SER
5
n
5
SER
5
B
GLU
6
n
6
GLU
6
B
GLU
7
n
7
GLU
7
B
LYS
8
n
8
LYS
8
B
GLN
9
n
9
GLN
9
B
TYR
10
n
10
TYR
10
B
ILE
11
n
11
ILE
11
B
THR
12
n
12
THR
12
B
SER
13
n
13
SER
13
B
LEU
14
n
14
LEU
14
B
TRP
15
n
15
TRP
15
B
ALA
16
n
16
ALA
16
B
LYS
17
n
17
LYS
17
B
VAL
18
n
18
VAL
18
B
ASN
19
n
19
ASN
19
B
VAL
20
n
20
VAL
20
B
GLY
21
n
21
GLY
21
B
GLU
22
n
22
GLU
22
B
VAL
23
n
23
VAL
23
B
GLY
24
n
24
GLY
24
B
GLY
25
n
25
GLY
25
B
GLU
26
n
26
GLU
26
B
ALA
27
n
27
ALA
27
B
LEU
28
n
28
LEU
28
B
ALA
29
n
29
ALA
29
B
ARG
30
n
30
ARG
30
B
LEU
31
n
31
LEU
31
B
LEU
32
n
32
LEU
32
B
ILE
33
n
33
ILE
33
B
VAL
34
n
34
VAL
34
B
TYR
35
n
35
TYR
35
B
PRO
36
n
36
PRO
36
B
TRP
37
n
37
TRP
37
B
THR
38
n
38
THR
38
B
GLN
39
n
39
GLN
39
B
ARG
40
n
40
ARG
40
B
PHE
41
n
41
PHE
41
B
PHE
42
n
42
PHE
42
B
ALA
43
n
43
ALA
43
B
SER
44
n
44
SER
44
B
PHE
45
n
45
PHE
45
B
GLY
46
n
46
GLY
46
B
ASN
47
n
47
ASN
47
B
LEU
48
n
48
LEU
48
B
SER
49
n
49
SER
49
B
SER
50
n
50
SER
50
B
ALA
51
n
51
ALA
51
B
ASN
52
n
52
ASN
52
B
ALA
53
n
53
ALA
53
B
ILE
54
n
54
ILE
54
B
LEU
55
n
55
LEU
55
B
HIS
56
n
56
HIS
56
B
ASN
57
n
57
ASN
57
B
ALA
58
n
58
ALA
58
B
LYS
59
n
59
LYS
59
B
VAL
60
n
60
VAL
60
B
LEU
61
n
61
LEU
61
B
ALA
62
n
62
ALA
62
B
HIS
63
n
63
HIS
63
B
GLY
64
n
64
GLY
64
B
GLN
65
n
65
GLN
65
B
LYS
66
n
66
LYS
66
B
VAL
67
n
67
VAL
67
B
LEU
68
n
68
LEU
68
B
THR
69
n
69
THR
69
B
SER
70
n
70
SER
70
B
PHE
71
n
71
PHE
71
B
GLY
72
n
72
GLY
72
B
GLU
73
n
73
GLU
73
B
ALA
74
n
74
ALA
74
B
VAL
75
n
75
VAL
75
B
LYS
76
n
76
LYS
76
B
ASN
77
n
77
ASN
77
B
LEU
78
n
78
LEU
78
B
ASP
79
n
79
ASP
79
B
ASN
80
n
80
ASN
80
B
ILE
81
n
81
ILE
81
B
LYS
82
n
82
LYS
82
B
LYS
83
n
83
LYS
83
B
THR
84
n
84
THR
84
B
PHE
85
n
85
PHE
85
B
ALA
86
n
86
ALA
86
B
GLN
87
n
87
GLN
87
B
LEU
88
n
88
LEU
88
B
SER
89
n
89
SER
89
B
GLU
90
n
90
GLU
90
B
LEU
91
n
91
LEU
91
B
HIS
92
n
92
HIS
92
B
CYS
93
n
93
CYS
93
B
GLU
94
n
94
GLU
94
B
LYS
95
n
95
LYS
95
B
LEU
96
n
96
LEU
96
B
HIS
97
n
97
HIS
97
B
VAL
98
n
98
VAL
98
B
ASP
99
n
99
ASP
99
B
PRO
100
n
100
PRO
100
B
GLU
101
n
101
GLU
101
B
ASN
102
n
102
ASN
102
B
PHE
103
n
103
PHE
103
B
LYS
104
n
104
LYS
104
B
LEU
105
n
105
LEU
105
B
LEU
106
n
106
LEU
106
B
GLY
107
n
107
GLY
107
B
ASN
108
n
108
ASN
108
B
ILE
109
n
109
ILE
109
B
LEU
110
n
110
LEU
110
B
ILE
111
n
111
ILE
111
B
ILE
112
n
112
ILE
112
B
VAL
113
n
113
VAL
113
B
LEU
114
n
114
LEU
114
B
ALA
115
n
115
ALA
115
B
THR
116
n
116
THR
116
B
HIS
117
n
117
HIS
117
B
PHE
118
n
118
PHE
118
B
PRO
119
n
119
PRO
119
B
LYS
120
n
120
LYS
120
B
GLU
121
n
121
GLU
121
B
PHE
122
n
122
PHE
122
B
THR
123
n
123
THR
123
B
PRO
124
n
124
PRO
124
B
ALA
125
n
125
ALA
125
B
SER
126
n
126
SER
126
B
GLN
127
n
127
GLN
127
B
ALA
128
n
128
ALA
128
B
ALA
129
n
129
ALA
129
B
TRP
130
n
130
TRP
130
B
THR
131
n
131
THR
131
B
LYS
132
n
132
LYS
132
B
LEU
133
n
133
LEU
133
B
VAL
134
n
134
VAL
134
B
ASN
135
n
135
ASN
135
B
ALA
136
n
136
ALA
136
B
VAL
137
n
137
VAL
137
B
ALA
138
n
138
ALA
138
B
HIS
139
n
139
HIS
139
B
ALA
140
n
140
ALA
140
B
LEU
141
n
141
LEU
141
B
ALA
142
n
142
ALA
142
B
LEU
143
n
143
LEU
143
B
GLY
144
n
144
GLY
144
B
TYR
145
n
145
TYR
145
B
HIS
146
n
146
HIS
146
B
author_and_software_defined_assembly
PISA
4
tetrameric
11620
A
HIS
87
A
NE2
HIS
87
1_555
A
HEM
150
C
FE
HEM
1_555
A
HEM
150
C
NA
HEM
1_555
84.5
A
HIS
87
A
NE2
HIS
87
1_555
A
HEM
150
C
FE
HEM
1_555
A
HEM
150
C
NB
HEM
1_555
88.9
A
HEM
150
C
NA
HEM
1_555
A
HEM
150
C
FE
HEM
1_555
A
HEM
150
C
NB
HEM
1_555
87.7
A
HIS
87
A
NE2
HIS
87
1_555
A
HEM
150
C
FE
HEM
1_555
A
HEM
150
C
NC
HEM
1_555
96.7
A
HEM
150
C
NA
HEM
1_555
A
HEM
150
C
FE
HEM
1_555
A
HEM
150
C
NC
HEM
1_555
178.6
A
HEM
150
C
NB
HEM
1_555
A
HEM
150
C
FE
HEM
1_555
A
HEM
150
C
NC
HEM
1_555
93.1
A
HIS
87
A
NE2
HIS
87
1_555
A
HEM
150
C
FE
HEM
1_555
A
HEM
150
C
ND
HEM
1_555
92.5
A
HEM
150
C
NA
HEM
1_555
A
HEM
150
C
FE
HEM
1_555
A
HEM
150
C
ND
HEM
1_555
91.5
A
HEM
150
C
NB
HEM
1_555
A
HEM
150
C
FE
HEM
1_555
A
HEM
150
C
ND
HEM
1_555
178.3
A
HEM
150
C
NC
HEM
1_555
A
HEM
150
C
FE
HEM
1_555
A
HEM
150
C
ND
HEM
1_555
87.7
A
HIS
87
A
NE2
HIS
87
1_555
A
HEM
150
C
FE
HEM
1_555
A
CMO
151
D
C
CMO
1_555
175.1
A
HEM
150
C
NA
HEM
1_555
A
HEM
150
C
FE
HEM
1_555
A
CMO
151
D
C
CMO
1_555
91.5
A
HEM
150
C
NB
HEM
1_555
A
HEM
150
C
FE
HEM
1_555
A
CMO
151
D
C
CMO
1_555
88.1
A
HEM
150
C
NC
HEM
1_555
A
HEM
150
C
FE
HEM
1_555
A
CMO
151
D
C
CMO
1_555
87.3
A
HEM
150
C
ND
HEM
1_555
A
HEM
150
C
FE
HEM
1_555
A
CMO
151
D
C
CMO
1_555
90.4
B
HIS
92
B
NE2
HIS
92
1_555
B
HEM
150
E
FE
HEM
1_555
B
HEM
150
E
NA
HEM
1_555
85.5
B
HIS
92
B
NE2
HIS
92
1_555
B
HEM
150
E
FE
HEM
1_555
B
HEM
150
E
NB
HEM
1_555
85.5
B
HEM
150
E
NA
HEM
1_555
B
HEM
150
E
FE
HEM
1_555
B
HEM
150
E
NB
HEM
1_555
87.9
B
HIS
92
B
NE2
HIS
92
1_555
B
HEM
150
E
FE
HEM
1_555
B
HEM
150
E
NC
HEM
1_555
96.1
B
HEM
150
E
NA
HEM
1_555
B
HEM
150
E
FE
HEM
1_555
B
HEM
150
E
NC
HEM
1_555
178.0
B
HEM
150
E
NB
HEM
1_555
B
HEM
150
E
FE
HEM
1_555
B
HEM
150
E
NC
HEM
1_555
93.5
B
HIS
92
B
NE2
HIS
92
1_555
B
HEM
150
E
FE
HEM
1_555
B
HEM
150
E
ND
HEM
1_555
95.1
B
HEM
150
E
NA
HEM
1_555
B
HEM
150
E
FE
HEM
1_555
B
HEM
150
E
ND
HEM
1_555
90.9
B
HEM
150
E
NB
HEM
1_555
B
HEM
150
E
FE
HEM
1_555
B
HEM
150
E
ND
HEM
1_555
178.6
B
HEM
150
E
NC
HEM
1_555
B
HEM
150
E
FE
HEM
1_555
B
HEM
150
E
ND
HEM
1_555
87.7
B
HIS
92
B
NE2
HIS
92
1_555
B
HEM
150
E
FE
HEM
1_555
B
CMO
151
F
C
CMO
1_555
173.1
B
HEM
150
E
NA
HEM
1_555
B
HEM
150
E
FE
HEM
1_555
B
CMO
151
F
C
CMO
1_555
90.3
B
HEM
150
E
NB
HEM
1_555
B
HEM
150
E
FE
HEM
1_555
B
CMO
151
F
C
CMO
1_555
88.8
B
HEM
150
E
NC
HEM
1_555
B
HEM
150
E
FE
HEM
1_555
B
CMO
151
F
C
CMO
1_555
88.3
B
HEM
150
E
ND
HEM
1_555
B
HEM
150
E
FE
HEM
1_555
B
CMO
151
F
C
CMO
1_555
90.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_656
-x+1,y,-z+1
crystal symmetry operation
93.6957013488
0.0000000000
50.6599125823
1
A
HIS
72
-107.79
42.67
1
B
ASN
77
-152.07
74.89
1
B
TYR
145
-156.84
55.82
protein_rep.param
protein.top
water_rep.param
water.top
hem_xplor.param
hem_xplor.top
cmo_xplor.param
cmo_xplor.top
ion.param
ion.top
31.8
-4.85
0.00
-0.47
11.10
0.00
-6.26
0.217
0.004
0.185
1.86
30.57
2805
28243
9.9
95.9
RANDOM
722671.65
0.000000
1
OVERALL
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1V75
FLAT MODEL
70.5897
0.361074
0.25
0.21
5.00
0.22
0.19
1.86
30.57
385
2767
90
0
2292
0.013
1.0
19.2
0.60
0.299
0.013
0.296
1.98
500
4143
6
10.8
95.6
23.6
1.86
53.51
2Z6N
28249
0.035
1
3.76
96.0
0.138
1.86
1.93
3.74
95.4
refinement
CNX
2005
data collection
CrystalClear
data reduction
CrystalClear
data scaling
CrystalClear
phasing
CNX
Crystal Structure of Carbonmonoxy Hemoglobin D from the Aldabra Giant Tortoise, Geochelone gigantea
1
N
N
2
N
N
3
N
N
4
N
N
3
N
N
4
N
N
5
N
N
5
N
N
The biological assembly is a hemoglobin tetramer generated from the alpha-beta dimer in the asymmetric unit by the operation: -x, y, -z.
A
THR
3
A
THR
3
HELX_P
A
LEU
18
A
LEU
18
1
1
16
A
HIS
20
A
HIS
20
HELX_P
A
TYR
36
A
TYR
36
1
2
17
A
PRO
37
A
PRO
37
HELX_P
A
PHE
43
A
PHE
43
5
3
7
A
SER
52
A
SER
52
HELX_P
A
HIS
72
A
HIS
72
1
4
21
A
ASN
75
A
ASN
75
HELX_P
A
LEU
80
A
LEU
80
1
5
6
A
LEU
80
A
LEU
80
HELX_P
A
ASN
90
A
ASN
90
1
6
11
A
ASP
94
A
ASP
94
HELX_P
A
GLY
114
A
GLY
114
1
7
21
A
ARG
115
A
ARG
115
HELX_P
A
TYR
117
A
TYR
117
5
8
3
A
THR
118
A
THR
118
HELX_P
A
GLU
138
A
GLU
138
1
9
21
A
LYS
139
A
LYS
139
HELX_P
A
ARG
141
A
ARG
141
5
10
3
B
THR
4
B
THR
4
HELX_P
B
ALA
16
B
ALA
16
1
11
13
B
ASN
19
B
ASN
19
HELX_P
B
TYR
35
B
TYR
35
1
12
17
B
PRO
36
B
PRO
36
HELX_P
B
GLY
46
B
GLY
46
5
13
11
B
SER
50
B
SER
50
HELX_P
B
HIS
56
B
HIS
56
1
14
7
B
ASN
57
B
ASN
57
HELX_P
B
LYS
76
B
LYS
76
1
15
20
B
ASN
80
B
ASN
80
HELX_P
B
PHE
85
B
PHE
85
1
16
6
B
PHE
85
B
PHE
85
HELX_P
B
LYS
95
B
LYS
95
1
17
11
B
PRO
100
B
PRO
100
HELX_P
B
PHE
118
B
PHE
118
1
18
19
B
THR
123
B
THR
123
HELX_P
B
LEU
143
B
LEU
143
1
19
21
B
GLY
144
B
GLY
144
HELX_P
B
HIS
146
B
HIS
146
5
20
3
metalc
2.186
A
HIS
87
A
NE2
HIS
87
1_555
A
HEM
150
C
FE
HEM
1_555
metalc
1.756
A
HEM
150
C
FE
HEM
1_555
A
CMO
151
D
C
CMO
1_555
metalc
2.186
B
HIS
92
B
NE2
HIS
92
1_555
B
HEM
150
E
FE
HEM
1_555
metalc
1.752
B
HEM
150
E
FE
HEM
1_555
B
CMO
151
F
C
CMO
1_555
TRANSPORT PROTEIN
HEMOGLOBIN D, REPTILIA, THE ALDABRA GIANT TORTOISE, Geochelone gigantea, Heme, Iron, Metal-binding, Oxygen transport, Transport, TRANSPORT PROTEIN
HBAD_ALDEL
UNP
1
1
P83134
MLTEDDKQLIQHVWEKVLEHQEDFGAEALERMFIVYPSTKTYFPHFDLHHDSEQIRHHGKKVVGALGDAVKHIDNLSATL
SELSNLHAYNLRVDPVNFKLLSHCFQVVLGAHLGREYTPQVQVAYDKFLAAVSAVLAEKYR
HBB_ALDEL
UNP
2
1
P83133
VHWTSEEKQYITSLWAKVNVGEVGGEALARLLIVYPWTQRFFASFGNLSSANAILHNAKVLAHGQKVLTSFGEAVKNLDN
IKKTFAQLSELHCEKLHVDPENFKLLGNILIIVLATHFPKEFTPASQAAWTKLVNAVAHALALGYH
1
141
2Z6N
1
141
P83134
A
1
1
141
1
146
2Z6N
1
146
P83133
B
2
1
146
BINDING SITE FOR RESIDUE HEM A 150
A
HEM
150
Software
21
BINDING SITE FOR RESIDUE CMO A 151
A
CMO
151
Software
3
BINDING SITE FOR RESIDUE HEM B 150
B
HEM
150
Software
22
BINDING SITE FOR RESIDUE CMO B 151
B
CMO
151
Software
3
A
TYR
42
A
TYR
42
21
1_555
A
PHE
43
A
PHE
43
21
1_555
A
HIS
45
A
HIS
45
21
1_555
A
PHE
46
A
PHE
46
21
1_555
A
HIS
58
A
HIS
58
21
1_555
A
ALA
65
A
ALA
65
21
1_555
A
LEU
83
A
LEU
83
21
1_555
A
HIS
87
A
HIS
87
21
1_555
A
LEU
91
A
LEU
91
21
1_555
A
VAL
93
A
VAL
93
21
1_555
A
ASN
97
A
ASN
97
21
1_555
A
PHE
98
A
PHE
98
21
1_555
A
LEU
101
A
LEU
101
21
1_555
A
LEU
136
A
LEU
136
21
1_555
A
CMO
151
D
CMO
21
1_555
A
HOH
160
G
HOH
21
1_555
A
HOH
162
G
HOH
21
1_555
A
HOH
237
G
HOH
21
1_555
A
HOH
274
G
HOH
21
1_555
B
HOH
172
H
HOH
21
1_554
B
HOH
185
H
HOH
21
1_554
A
HIS
58
A
HIS
58
3
1_555
A
VAL
62
A
VAL
62
3
1_555
A
HEM
150
C
HEM
3
1_555
B
THR
38
B
THR
38
22
1_555
B
PHE
41
B
PHE
41
22
1_555
B
PHE
42
B
PHE
42
22
1_555
B
PHE
45
B
PHE
45
22
1_555
B
LYS
59
B
LYS
59
22
1_555
B
HIS
63
B
HIS
63
22
1_555
B
LYS
66
B
LYS
66
22
1_555
B
SER
70
B
SER
70
22
1_555
B
LEU
88
B
LEU
88
22
1_555
B
HIS
92
B
HIS
92
22
1_555
B
LEU
96
B
LEU
96
22
1_555
B
VAL
98
B
VAL
98
22
1_555
B
ASN
102
B
ASN
102
22
1_555
B
PHE
103
B
PHE
103
22
1_555
B
LEU
106
B
LEU
106
22
1_555
B
LEU
141
B
LEU
141
22
1_555
B
CMO
151
F
CMO
22
1_555
B
HOH
225
H
HOH
22
1_555
B
HOH
229
H
HOH
22
1_555
B
HOH
272
H
HOH
22
1_555
B
HOH
317
H
HOH
22
1_555
B
HOH
367
H
HOH
22
1_555
B
HIS
63
B
HIS
63
3
1_555
B
VAL
67
B
VAL
67
3
1_555
B
HEM
150
E
HEM
3
1_555
5
C 1 2 1