0.018715
0.006253
0.010405
0.000000
0.019741
0.010407
0.000000
0.000000
0.022324
0.00000
0.00000
0.00000
Kanagawa, M.
Baba S.
Kuramitsu, S.
Yokoyama, S.
Kawai, G.
Sampei, G.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
3
108.56
108.57
108.48
53.434
53.408
53.419
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C4 H12 N O3 1
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER
non-polymer
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
S
N
305
N
O
N
306
N
O
N
307
N
O
N
308
N
O
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
R
C
N
314
N
O
N
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
C
N
327
N
C
N
328
N
C
N
329
N
C
N
330
N
N
N
331
N
O
N
332
N
O
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
N
357
N
O
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
N
375
N
C
N
376
N
C
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
Y
340
N
doub
Y
341
N
sing
Y
342
N
sing
N
343
N
sing
Y
344
N
doub
N
345
N
sing
Y
346
N
doub
N
347
N
sing
Y
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
doub
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
To be Published
0353
Crystal structure of dUTPase from Sulfolobus tokodaii
10.2210/pdb2zdc/pdb
pdb_00002zdc
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2007-10-06
MARMOSAIC 225 mm CCD
Fixed exit Si double crystal monochromator
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
BL26B2
SPring-8
1.0000
SYNCHROTRON
SPRING-8 BEAMLINE BL26B2
19003.061
167aa long hypothetical dUTPase
3
man
polymer
96.063
SULFATE ION
3
syn
non-polymer
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
1
syn
non-polymer
18.015
water
59
nat
water
no
no
GHMKGLTEKLMILSHQSIKNLLGKVILNYSEENVRENGYDLRICGDKYYELVQGAELPEKKATLREIEFKERAILSANHT
YLFESCEEFNMPADLAVLITLKSTLARNGFLAPPTVIDAGYKGKVNVAITAVYNSSLKKGMATHHLIFLKLDKPTERLYN
GKYQGGILI
GHMKGLTEKLMILSHQSIKNLLGKVILNYSEENVRENGYDLRICGDKYYELVQGAELPEKKATLREIEFKERAILSANHT
YLFESCEEFNMPADLAVLITLKSTLARNGFLAPPTVIDAGYKGKVNVAITAVYNSSLKKGMATHHLIFLKLDKPTERLYN
GKYQGGILI
A,B,C
sto001001632.2
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
Sulfolobus tokodaii
Escherichia coli
PLASMID
pET-HisTEV
1
2.13
42.16
VAPOR DIFFUSION, SITTING DROP
8.0
15% PEG8000, 0.5M Lithium Sulfate, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
RIKEN Structural Genomics/Proteomics Initiative
RSGI
NPPSFA, National Project on Protein Structural and Functional Analyses
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2008-05-27
1
1
2011-07-13
1
2
2023-11-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
PDBJ
Y
PDBJ
2007-11-21
REL
REL
SO4
SULFATE ION
TRS
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
HOH
water
2YZJ
PDB
experimental model
SO4
6247
2
SO4
SO4
6247
A
TRS
6646
3
TRS
TRS
6646
A
SO4
6245
2
SO4
SO4
6245
B
SO4
6246
2
SO4
SO4
6246
C
HOH
3
4
HOH
HOH
6647
A
HOH
5
4
HOH
HOH
6648
A
HOH
7
4
HOH
HOH
6649
A
HOH
10
4
HOH
HOH
6650
A
HOH
13
4
HOH
HOH
6651
A
HOH
19
4
HOH
HOH
6652
A
HOH
20
4
HOH
HOH
6653
A
HOH
22
4
HOH
HOH
6654
A
HOH
24
4
HOH
HOH
6655
A
HOH
25
4
HOH
HOH
6656
A
HOH
26
4
HOH
HOH
6657
A
HOH
27
4
HOH
HOH
6658
A
HOH
29
4
HOH
HOH
6659
A
HOH
30
4
HOH
HOH
6660
A
HOH
31
4
HOH
HOH
6661
A
HOH
33
4
HOH
HOH
6662
A
HOH
34
4
HOH
HOH
6663
A
HOH
35
4
HOH
HOH
6664
A
HOH
44
4
HOH
HOH
6665
A
HOH
59
4
HOH
HOH
6666
A
HOH
63
4
HOH
HOH
6667
A
HOH
66
4
HOH
HOH
6668
A
HOH
67
4
HOH
HOH
6669
A
HOH
1
4
HOH
HOH
6246
B
HOH
2
4
HOH
HOH
6247
B
HOH
9
4
HOH
HOH
6248
B
HOH
11
4
HOH
HOH
6249
B
HOH
14
4
HOH
HOH
6250
B
HOH
16
4
HOH
HOH
6251
B
HOH
21
4
HOH
HOH
6252
B
HOH
23
4
HOH
HOH
6253
B
HOH
28
4
HOH
HOH
6254
B
HOH
45
4
HOH
HOH
6255
B
HOH
46
4
HOH
HOH
6256
B
HOH
48
4
HOH
HOH
6257
B
HOH
50
4
HOH
HOH
6258
B
HOH
51
4
HOH
HOH
6259
B
HOH
52
4
HOH
HOH
6260
B
HOH
53
4
HOH
HOH
6261
B
HOH
60
4
HOH
HOH
6262
B
HOH
4
4
HOH
HOH
6247
C
HOH
6
4
HOH
HOH
6248
C
HOH
8
4
HOH
HOH
6249
C
HOH
12
4
HOH
HOH
6250
C
HOH
15
4
HOH
HOH
6251
C
HOH
17
4
HOH
HOH
6252
C
HOH
18
4
HOH
HOH
6253
C
HOH
36
4
HOH
HOH
6254
C
HOH
37
4
HOH
HOH
6255
C
HOH
38
4
HOH
HOH
6256
C
HOH
39
4
HOH
HOH
6257
C
HOH
41
4
HOH
HOH
6258
C
HOH
42
4
HOH
HOH
6259
C
HOH
43
4
HOH
HOH
6260
C
HOH
47
4
HOH
HOH
6261
C
HOH
58
4
HOH
HOH
6262
C
HOH
61
4
HOH
HOH
6263
C
HOH
65
4
HOH
HOH
6264
C
HOH
69
4
HOH
HOH
6265
C
n
1
-1
A
n
2
0
A
n
3
1
A
n
4
2
A
n
5
3
A
n
6
4
A
n
7
5
A
n
8
6
A
n
9
7
A
n
10
8
A
n
11
9
A
ILE
10
n
12
ILE
10
A
LEU
11
n
13
LEU
11
A
SER
12
n
14
SER
12
A
HIS
13
n
15
HIS
13
A
GLN
14
n
16
GLN
14
A
SER
15
n
17
SER
15
A
ILE
16
n
18
ILE
16
A
LYS
17
n
19
LYS
17
A
ASN
18
n
20
ASN
18
A
LEU
19
n
21
LEU
19
A
LEU
20
n
22
LEU
20
A
GLY
21
n
23
GLY
21
A
LYS
22
n
24
LYS
22
A
VAL
23
n
25
VAL
23
A
ILE
24
n
26
ILE
24
A
LEU
25
n
27
LEU
25
A
ASN
26
n
28
ASN
26
A
TYR
27
n
29
TYR
27
A
SER
28
n
30
SER
28
A
GLU
29
n
31
GLU
29
A
GLU
30
n
32
GLU
30
A
ASN
31
n
33
ASN
31
A
VAL
32
n
34
VAL
32
A
ARG
33
n
35
ARG
33
A
GLU
34
n
36
GLU
34
A
ASN
35
n
37
ASN
35
A
GLY
36
n
38
GLY
36
A
TYR
37
n
39
TYR
37
A
ASP
38
n
40
ASP
38
A
LEU
39
n
41
LEU
39
A
ARG
40
n
42
ARG
40
A
ILE
41
n
43
ILE
41
A
CYS
42
n
44
CYS
42
A
GLY
43
n
45
GLY
43
A
ASP
44
n
46
ASP
44
A
LYS
45
n
47
LYS
45
A
TYR
46
n
48
TYR
46
A
TYR
47
n
49
TYR
47
A
GLU
48
n
50
GLU
48
A
LEU
49
n
51
LEU
49
A
VAL
50
n
52
VAL
50
A
GLN
51
n
53
GLN
51
A
GLY
52
n
54
GLY
52
A
ALA
53
n
55
ALA
53
A
GLU
54
n
56
GLU
54
A
LEU
55
n
57
LEU
55
A
PRO
56
n
58
PRO
56
A
GLU
57
n
59
GLU
57
A
LYS
58
n
60
LYS
58
A
LYS
59
n
61
LYS
59
A
ALA
60
n
62
ALA
60
A
THR
61
n
63
THR
61
A
LEU
62
n
64
LEU
62
A
ARG
63
n
65
ARG
63
A
GLU
64
n
66
GLU
64
A
ILE
65
n
67
ILE
65
A
GLU
66
n
68
GLU
66
A
PHE
67
n
69
PHE
67
A
LYS
68
n
70
LYS
68
A
GLU
69
n
71
GLU
69
A
ARG
70
n
72
ARG
70
A
ALA
71
n
73
ALA
71
A
ILE
72
n
74
ILE
72
A
LEU
73
n
75
LEU
73
A
SER
74
n
76
SER
74
A
ALA
75
n
77
ALA
75
A
ASN
76
n
78
ASN
76
A
HIS
77
n
79
HIS
77
A
THR
78
n
80
THR
78
A
TYR
79
n
81
TYR
79
A
LEU
80
n
82
LEU
80
A
PHE
81
n
83
PHE
81
A
GLU
82
n
84
GLU
82
A
SER
83
n
85
SER
83
A
CYS
84
n
86
CYS
84
A
GLU
85
n
87
GLU
85
A
GLU
86
n
88
GLU
86
A
PHE
87
n
89
PHE
87
A
ASN
88
n
90
ASN
88
A
MET
89
n
91
MET
89
A
PRO
90
n
92
PRO
90
A
ALA
91
n
93
ALA
91
A
ASP
92
n
94
ASP
92
A
LEU
93
n
95
LEU
93
A
ALA
94
n
96
ALA
94
A
VAL
95
n
97
VAL
95
A
LEU
96
n
98
LEU
96
A
ILE
97
n
99
ILE
97
A
THR
98
n
100
THR
98
A
LEU
99
n
101
LEU
99
A
LYS
100
n
102
LYS
100
A
SER
101
n
103
SER
101
A
THR
102
n
104
THR
102
A
LEU
103
n
105
LEU
103
A
ALA
104
n
106
ALA
104
A
ARG
105
n
107
ARG
105
A
ASN
106
n
108
ASN
106
A
GLY
107
n
109
GLY
107
A
PHE
108
n
110
PHE
108
A
LEU
109
n
111
LEU
109
A
ALA
110
n
112
ALA
110
A
PRO
111
n
113
PRO
111
A
PRO
112
n
114
PRO
112
A
THR
113
n
115
THR
113
A
VAL
114
n
116
VAL
114
A
ILE
115
n
117
ILE
115
A
ASP
116
n
118
ASP
116
A
ALA
117
n
119
ALA
117
A
GLY
118
n
120
GLY
118
A
TYR
119
n
121
TYR
119
A
LYS
120
n
122
LYS
120
A
GLY
121
n
123
GLY
121
A
LYS
122
n
124
LYS
122
A
VAL
123
n
125
VAL
123
A
ASN
124
n
126
ASN
124
A
VAL
125
n
127
VAL
125
A
ALA
126
n
128
ALA
126
A
ILE
127
n
129
ILE
127
A
THR
128
n
130
THR
128
A
ALA
129
n
131
ALA
129
A
VAL
130
n
132
VAL
130
A
TYR
131
n
133
TYR
131
A
ASN
132
n
134
ASN
132
A
SER
133
n
135
SER
133
A
SER
134
n
136
SER
134
A
LEU
135
n
137
LEU
135
A
LYS
136
n
138
LYS
136
A
LYS
137
n
139
LYS
137
A
GLY
138
n
140
GLY
138
A
MET
139
n
141
MET
139
A
ALA
140
n
142
ALA
140
A
THR
141
n
143
THR
141
A
HIS
142
n
144
HIS
142
A
HIS
143
n
145
HIS
143
A
LEU
144
n
146
LEU
144
A
ILE
145
n
147
ILE
145
A
PHE
146
n
148
PHE
146
A
LEU
147
n
149
LEU
147
A
LYS
148
n
150
LYS
148
A
LEU
149
n
151
LEU
149
A
ASP
150
n
152
ASP
150
A
LYS
151
n
153
LYS
151
A
PRO
152
n
154
PRO
152
A
n
155
153
A
n
156
154
A
n
157
155
A
n
158
156
A
n
159
157
A
n
160
158
A
n
161
159
A
n
162
160
A
n
163
161
A
n
164
162
A
n
165
163
A
n
166
164
A
n
167
165
A
n
168
166
A
n
169
167
A
n
1
-1
B
n
2
0
B
n
3
1
B
n
4
2
B
n
5
3
B
n
6
4
B
n
7
5
B
n
8
6
B
n
9
7
B
n
10
8
B
n
11
9
B
ILE
10
n
12
ILE
10
B
LEU
11
n
13
LEU
11
B
SER
12
n
14
SER
12
B
HIS
13
n
15
HIS
13
B
GLN
14
n
16
GLN
14
B
SER
15
n
17
SER
15
B
ILE
16
n
18
ILE
16
B
LYS
17
n
19
LYS
17
B
ASN
18
n
20
ASN
18
B
LEU
19
n
21
LEU
19
B
LEU
20
n
22
LEU
20
B
GLY
21
n
23
GLY
21
B
LYS
22
n
24
LYS
22
B
VAL
23
n
25
VAL
23
B
ILE
24
n
26
ILE
24
B
LEU
25
n
27
LEU
25
B
ASN
26
n
28
ASN
26
B
TYR
27
n
29
TYR
27
B
SER
28
n
30
SER
28
B
GLU
29
n
31
GLU
29
B
GLU
30
n
32
GLU
30
B
ASN
31
n
33
ASN
31
B
VAL
32
n
34
VAL
32
B
ARG
33
n
35
ARG
33
B
GLU
34
n
36
GLU
34
B
ASN
35
n
37
ASN
35
B
GLY
36
n
38
GLY
36
B
TYR
37
n
39
TYR
37
B
ASP
38
n
40
ASP
38
B
LEU
39
n
41
LEU
39
B
ARG
40
n
42
ARG
40
B
ILE
41
n
43
ILE
41
B
CYS
42
n
44
CYS
42
B
GLY
43
n
45
GLY
43
B
ASP
44
n
46
ASP
44
B
LYS
45
n
47
LYS
45
B
TYR
46
n
48
TYR
46
B
TYR
47
n
49
TYR
47
B
GLU
48
n
50
GLU
48
B
LEU
49
n
51
LEU
49
B
VAL
50
n
52
VAL
50
B
GLN
51
n
53
GLN
51
B
GLY
52
n
54
GLY
52
B
ALA
53
n
55
ALA
53
B
GLU
54
n
56
GLU
54
B
LEU
55
n
57
LEU
55
B
PRO
56
n
58
PRO
56
B
GLU
57
n
59
GLU
57
B
LYS
58
n
60
LYS
58
B
LYS
59
n
61
LYS
59
B
ALA
60
n
62
ALA
60
B
THR
61
n
63
THR
61
B
LEU
62
n
64
LEU
62
B
ARG
63
n
65
ARG
63
B
GLU
64
n
66
GLU
64
B
ILE
65
n
67
ILE
65
B
GLU
66
n
68
GLU
66
B
PHE
67
n
69
PHE
67
B
LYS
68
n
70
LYS
68
B
GLU
69
n
71
GLU
69
B
ARG
70
n
72
ARG
70
B
ALA
71
n
73
ALA
71
B
ILE
72
n
74
ILE
72
B
LEU
73
n
75
LEU
73
B
SER
74
n
76
SER
74
B
ALA
75
n
77
ALA
75
B
ASN
76
n
78
ASN
76
B
HIS
77
n
79
HIS
77
B
THR
78
n
80
THR
78
B
TYR
79
n
81
TYR
79
B
LEU
80
n
82
LEU
80
B
PHE
81
n
83
PHE
81
B
GLU
82
n
84
GLU
82
B
SER
83
n
85
SER
83
B
CYS
84
n
86
CYS
84
B
GLU
85
n
87
GLU
85
B
GLU
86
n
88
GLU
86
B
PHE
87
n
89
PHE
87
B
ASN
88
n
90
ASN
88
B
MET
89
n
91
MET
89
B
PRO
90
n
92
PRO
90
B
ALA
91
n
93
ALA
91
B
ASP
92
n
94
ASP
92
B
LEU
93
n
95
LEU
93
B
ALA
94
n
96
ALA
94
B
VAL
95
n
97
VAL
95
B
LEU
96
n
98
LEU
96
B
ILE
97
n
99
ILE
97
B
THR
98
n
100
THR
98
B
LEU
99
n
101
LEU
99
B
LYS
100
n
102
LYS
100
B
SER
101
n
103
SER
101
B
THR
102
n
104
THR
102
B
LEU
103
n
105
LEU
103
B
ALA
104
n
106
ALA
104
B
ARG
105
n
107
ARG
105
B
ASN
106
n
108
ASN
106
B
GLY
107
n
109
GLY
107
B
PHE
108
n
110
PHE
108
B
LEU
109
n
111
LEU
109
B
ALA
110
n
112
ALA
110
B
PRO
111
n
113
PRO
111
B
PRO
112
n
114
PRO
112
B
THR
113
n
115
THR
113
B
VAL
114
n
116
VAL
114
B
ILE
115
n
117
ILE
115
B
ASP
116
n
118
ASP
116
B
ALA
117
n
119
ALA
117
B
GLY
118
n
120
GLY
118
B
TYR
119
n
121
TYR
119
B
LYS
120
n
122
LYS
120
B
GLY
121
n
123
GLY
121
B
LYS
122
n
124
LYS
122
B
VAL
123
n
125
VAL
123
B
ASN
124
n
126
ASN
124
B
VAL
125
n
127
VAL
125
B
ALA
126
n
128
ALA
126
B
ILE
127
n
129
ILE
127
B
THR
128
n
130
THR
128
B
ALA
129
n
131
ALA
129
B
VAL
130
n
132
VAL
130
B
TYR
131
n
133
TYR
131
B
ASN
132
n
134
ASN
132
B
SER
133
n
135
SER
133
B
SER
134
n
136
SER
134
B
LEU
135
n
137
LEU
135
B
LYS
136
n
138
LYS
136
B
LYS
137
n
139
LYS
137
B
GLY
138
n
140
GLY
138
B
MET
139
n
141
MET
139
B
ALA
140
n
142
ALA
140
B
THR
141
n
143
THR
141
B
HIS
142
n
144
HIS
142
B
HIS
143
n
145
HIS
143
B
LEU
144
n
146
LEU
144
B
ILE
145
n
147
ILE
145
B
PHE
146
n
148
PHE
146
B
LEU
147
n
149
LEU
147
B
LYS
148
n
150
LYS
148
B
LEU
149
n
151
LEU
149
B
ASP
150
n
152
ASP
150
B
LYS
151
n
153
LYS
151
B
PRO
152
n
154
PRO
152
B
n
155
153
B
n
156
154
B
n
157
155
B
n
158
156
B
n
159
157
B
n
160
158
B
n
161
159
B
n
162
160
B
n
163
161
B
n
164
162
B
n
165
163
B
n
166
164
B
n
167
165
B
n
168
166
B
n
169
167
B
n
1
-1
C
n
2
0
C
n
3
1
C
n
4
2
C
n
5
3
C
n
6
4
C
n
7
5
C
n
8
6
C
n
9
7
C
n
10
8
C
n
11
9
C
ILE
10
n
12
ILE
10
C
LEU
11
n
13
LEU
11
C
SER
12
n
14
SER
12
C
HIS
13
n
15
HIS
13
C
GLN
14
n
16
GLN
14
C
SER
15
n
17
SER
15
C
ILE
16
n
18
ILE
16
C
LYS
17
n
19
LYS
17
C
ASN
18
n
20
ASN
18
C
LEU
19
n
21
LEU
19
C
LEU
20
n
22
LEU
20
C
GLY
21
n
23
GLY
21
C
LYS
22
n
24
LYS
22
C
VAL
23
n
25
VAL
23
C
ILE
24
n
26
ILE
24
C
LEU
25
n
27
LEU
25
C
ASN
26
n
28
ASN
26
C
TYR
27
n
29
TYR
27
C
SER
28
n
30
SER
28
C
GLU
29
n
31
GLU
29
C
GLU
30
n
32
GLU
30
C
ASN
31
n
33
ASN
31
C
VAL
32
n
34
VAL
32
C
ARG
33
n
35
ARG
33
C
GLU
34
n
36
GLU
34
C
ASN
35
n
37
ASN
35
C
GLY
36
n
38
GLY
36
C
TYR
37
n
39
TYR
37
C
ASP
38
n
40
ASP
38
C
LEU
39
n
41
LEU
39
C
ARG
40
n
42
ARG
40
C
ILE
41
n
43
ILE
41
C
CYS
42
n
44
CYS
42
C
GLY
43
n
45
GLY
43
C
ASP
44
n
46
ASP
44
C
LYS
45
n
47
LYS
45
C
TYR
46
n
48
TYR
46
C
TYR
47
n
49
TYR
47
C
GLU
48
n
50
GLU
48
C
LEU
49
n
51
LEU
49
C
VAL
50
n
52
VAL
50
C
GLN
51
n
53
GLN
51
C
GLY
52
n
54
GLY
52
C
ALA
53
n
55
ALA
53
C
GLU
54
n
56
GLU
54
C
LEU
55
n
57
LEU
55
C
PRO
56
n
58
PRO
56
C
GLU
57
n
59
GLU
57
C
LYS
58
n
60
LYS
58
C
LYS
59
n
61
LYS
59
C
ALA
60
n
62
ALA
60
C
THR
61
n
63
THR
61
C
LEU
62
n
64
LEU
62
C
ARG
63
n
65
ARG
63
C
GLU
64
n
66
GLU
64
C
ILE
65
n
67
ILE
65
C
GLU
66
n
68
GLU
66
C
PHE
67
n
69
PHE
67
C
LYS
68
n
70
LYS
68
C
GLU
69
n
71
GLU
69
C
ARG
70
n
72
ARG
70
C
ALA
71
n
73
ALA
71
C
ILE
72
n
74
ILE
72
C
LEU
73
n
75
LEU
73
C
SER
74
n
76
SER
74
C
ALA
75
n
77
ALA
75
C
ASN
76
n
78
ASN
76
C
HIS
77
n
79
HIS
77
C
THR
78
n
80
THR
78
C
TYR
79
n
81
TYR
79
C
LEU
80
n
82
LEU
80
C
PHE
81
n
83
PHE
81
C
GLU
82
n
84
GLU
82
C
SER
83
n
85
SER
83
C
CYS
84
n
86
CYS
84
C
GLU
85
n
87
GLU
85
C
GLU
86
n
88
GLU
86
C
PHE
87
n
89
PHE
87
C
ASN
88
n
90
ASN
88
C
MET
89
n
91
MET
89
C
PRO
90
n
92
PRO
90
C
ALA
91
n
93
ALA
91
C
ASP
92
n
94
ASP
92
C
LEU
93
n
95
LEU
93
C
ALA
94
n
96
ALA
94
C
VAL
95
n
97
VAL
95
C
LEU
96
n
98
LEU
96
C
ILE
97
n
99
ILE
97
C
THR
98
n
100
THR
98
C
LEU
99
n
101
LEU
99
C
LYS
100
n
102
LYS
100
C
SER
101
n
103
SER
101
C
THR
102
n
104
THR
102
C
LEU
103
n
105
LEU
103
C
ALA
104
n
106
ALA
104
C
ARG
105
n
107
ARG
105
C
ASN
106
n
108
ASN
106
C
GLY
107
n
109
GLY
107
C
PHE
108
n
110
PHE
108
C
LEU
109
n
111
LEU
109
C
ALA
110
n
112
ALA
110
C
PRO
111
n
113
PRO
111
C
PRO
112
n
114
PRO
112
C
THR
113
n
115
THR
113
C
VAL
114
n
116
VAL
114
C
ILE
115
n
117
ILE
115
C
ASP
116
n
118
ASP
116
C
ALA
117
n
119
ALA
117
C
GLY
118
n
120
GLY
118
C
TYR
119
n
121
TYR
119
C
LYS
120
n
122
LYS
120
C
GLY
121
n
123
GLY
121
C
LYS
122
n
124
LYS
122
C
VAL
123
n
125
VAL
123
C
ASN
124
n
126
ASN
124
C
VAL
125
n
127
VAL
125
C
ALA
126
n
128
ALA
126
C
ILE
127
n
129
ILE
127
C
THR
128
n
130
THR
128
C
ALA
129
n
131
ALA
129
C
VAL
130
n
132
VAL
130
C
TYR
131
n
133
TYR
131
C
ASN
132
n
134
ASN
132
C
SER
133
n
135
SER
133
C
SER
134
n
136
SER
134
C
LEU
135
n
137
LEU
135
C
LYS
136
n
138
LYS
136
C
LYS
137
n
139
LYS
137
C
GLY
138
n
140
GLY
138
C
MET
139
n
141
MET
139
C
ALA
140
n
142
ALA
140
C
THR
141
n
143
THR
141
C
HIS
142
n
144
HIS
142
C
HIS
143
n
145
HIS
143
C
LEU
144
n
146
LEU
144
C
ILE
145
n
147
ILE
145
C
PHE
146
n
148
PHE
146
C
LEU
147
n
149
LEU
147
C
LYS
148
n
150
LYS
148
C
LEU
149
n
151
LEU
149
C
ASP
150
n
152
ASP
150
C
LYS
151
n
153
LYS
151
C
PRO
152
n
154
PRO
152
C
n
155
153
C
n
156
154
C
n
157
155
C
n
158
156
C
n
159
157
C
n
160
158
C
n
161
159
C
n
162
160
C
n
163
161
C
n
164
162
C
n
165
163
C
n
166
164
C
n
167
165
C
n
168
166
C
n
169
167
C
author_and_software_defined_assembly
PISA
3
trimeric
9000
-91
16160
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
25
A
N
LEU
27
A
O
GLU
86
A
O
GLU
88
A
O
GLU
82
A
O
GLU
84
A
N
CYS
42
A
N
CYS
44
A
O
THR
128
A
O
THR
130
A
N
LEU
109
A
N
LEU
111
A
O
THR
61
A
O
THR
63
A
N
VAL
50
A
N
VAL
52
A
N
CYS
42
A
N
CYS
44
A
O
GLU
82
A
O
GLU
84
A
O
LEU
147
A
O
LEU
149
A
N
ALA
94
A
N
ALA
96
A
N
ILE
97
A
N
ILE
99
A
O
THR
113
A
O
THR
115
A
N
LEU
55
A
N
LEU
57
B
O
SER
134
B
O
SER
136
B
O
SER
133
B
O
SER
135
B
N
LEU
73
B
N
LEU
75
A
N
LEU
73
A
N
LEU
75
A
O
SER
133
A
O
SER
135
A
N
SER
134
A
N
SER
136
C
O
LEU
55
C
O
LEU
57
B
N
LEU
25
B
N
LEU
27
B
O
GLU
86
B
O
GLU
88
B
O
GLU
82
B
O
GLU
84
B
N
CYS
42
B
N
CYS
44
B
O
THR
128
B
O
THR
130
B
N
LEU
109
B
N
LEU
111
B
O
THR
61
B
O
THR
63
B
N
VAL
50
B
N
VAL
52
B
N
CYS
42
B
N
CYS
44
B
O
GLU
82
B
O
GLU
84
B
O
LEU
147
B
O
LEU
149
B
N
ALA
94
B
N
ALA
96
B
N
ILE
97
B
N
ILE
99
B
O
THR
113
B
O
THR
115
B
N
LEU
55
B
N
LEU
57
C
O
LYS
136
C
O
LYS
138
C
O
SER
133
C
O
SER
135
C
N
LEU
73
C
N
LEU
75
C
N
LEU
25
C
N
LEU
27
C
O
GLU
86
C
O
GLU
88
C
O
GLU
82
C
O
GLU
84
C
N
CYS
42
C
N
CYS
44
C
O
THR
128
C
O
THR
130
C
N
LEU
109
C
N
LEU
111
C
O
THR
61
C
O
THR
63
C
N
VAL
50
C
N
VAL
52
C
N
CYS
42
C
N
CYS
44
C
O
GLU
82
C
O
GLU
84
C
O
LEU
147
C
O
LEU
149
C
N
ALA
94
C
N
ALA
96
C
N
ILE
97
C
N
ILE
99
C
O
THR
113
C
O
THR
115
1
A
GLY
-1
A
GLY
1
1
Y
1
A
HIS
0
A
HIS
2
1
Y
1
A
MET
1
A
MET
3
1
Y
1
A
LYS
2
A
LYS
4
1
Y
1
A
GLY
3
A
GLY
5
1
Y
1
A
LEU
4
A
LEU
6
1
Y
1
A
THR
5
A
THR
7
1
Y
1
A
GLU
6
A
GLU
8
1
Y
1
A
LYS
7
A
LYS
9
1
Y
1
A
LEU
8
A
LEU
10
1
Y
1
A
MET
9
A
MET
11
1
Y
1
A
THR
153
A
THR
155
1
Y
1
A
GLU
154
A
GLU
156
1
Y
1
A
ARG
155
A
ARG
157
1
Y
1
A
LEU
156
A
LEU
158
1
Y
1
A
TYR
157
A
TYR
159
1
Y
1
A
ASN
158
A
ASN
160
1
Y
1
A
GLY
159
A
GLY
161
1
Y
1
A
LYS
160
A
LYS
162
1
Y
1
A
TYR
161
A
TYR
163
1
Y
1
A
GLN
162
A
GLN
164
1
Y
1
A
GLY
163
A
GLY
165
1
Y
1
A
GLY
164
A
GLY
166
1
Y
1
A
ILE
165
A
ILE
167
1
Y
1
A
LEU
166
A
LEU
168
1
Y
1
A
ILE
167
A
ILE
169
1
Y
1
B
GLY
-1
B
GLY
1
1
Y
1
B
HIS
0
B
HIS
2
1
Y
1
B
MET
1
B
MET
3
1
Y
1
B
LYS
2
B
LYS
4
1
Y
1
B
GLY
3
B
GLY
5
1
Y
1
B
LEU
4
B
LEU
6
1
Y
1
B
THR
5
B
THR
7
1
Y
1
B
GLU
6
B
GLU
8
1
Y
1
B
LYS
7
B
LYS
9
1
Y
1
B
LEU
8
B
LEU
10
1
Y
1
B
MET
9
B
MET
11
1
Y
1
B
THR
153
B
THR
155
1
Y
1
B
GLU
154
B
GLU
156
1
Y
1
B
ARG
155
B
ARG
157
1
Y
1
B
LEU
156
B
LEU
158
1
Y
1
B
TYR
157
B
TYR
159
1
Y
1
B
ASN
158
B
ASN
160
1
Y
1
B
GLY
159
B
GLY
161
1
Y
1
B
LYS
160
B
LYS
162
1
Y
1
B
TYR
161
B
TYR
163
1
Y
1
B
GLN
162
B
GLN
164
1
Y
1
B
GLY
163
B
GLY
165
1
Y
1
B
GLY
164
B
GLY
166
1
Y
1
B
ILE
165
B
ILE
167
1
Y
1
B
LEU
166
B
LEU
168
1
Y
1
B
ILE
167
B
ILE
169
1
Y
1
C
GLY
-1
C
GLY
1
1
Y
1
C
HIS
0
C
HIS
2
1
Y
1
C
MET
1
C
MET
3
1
Y
1
C
LYS
2
C
LYS
4
1
Y
1
C
GLY
3
C
GLY
5
1
Y
1
C
LEU
4
C
LEU
6
1
Y
1
C
THR
5
C
THR
7
1
Y
1
C
GLU
6
C
GLU
8
1
Y
1
C
LYS
7
C
LYS
9
1
Y
1
C
LEU
8
C
LEU
10
1
Y
1
C
MET
9
C
MET
11
1
Y
1
C
THR
153
C
THR
155
1
Y
1
C
GLU
154
C
GLU
156
1
Y
1
C
ARG
155
C
ARG
157
1
Y
1
C
LEU
156
C
LEU
158
1
Y
1
C
TYR
157
C
TYR
159
1
Y
1
C
ASN
158
C
ASN
160
1
Y
1
C
GLY
159
C
GLY
161
1
Y
1
C
LYS
160
C
LYS
162
1
Y
1
C
TYR
161
C
TYR
163
1
Y
1
C
GLN
162
C
GLN
164
1
Y
1
C
GLY
163
C
GLY
165
1
Y
1
C
GLY
164
C
GLY
166
1
Y
1
C
ILE
165
C
ILE
167
1
Y
1
C
LEU
166
C
LEU
168
1
Y
1
C
ILE
167
C
ILE
169
1
Y
1
A
ASN
35
-152.43
41.41
1
A
CYS
42
-138.25
-159.12
1
A
LYS
68
-71.09
-98.44
1
B
LYS
22
-128.02
-51.79
1
B
ASN
35
-151.71
38.35
1
B
LYS
68
-82.15
-97.83
1
C
ASN
35
-146.02
34.60
1
C
CYS
42
-139.12
-159.66
1
C
LYS
68
-81.24
-85.06
1
C
ALA
91
-65.49
5.80
protein_rep.param
protein.top
so4.param
so4.top
water_rep.param
water.top
ion.param
ion.top
52.1
0.75
18.95
15.90
0.98
16.84
-1.74
0.256
0.005
0.218
0.218
2.00
44.83
2888
28947
10.0
91.1
RANDOM
205608.97
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
2YZJ
MAXIMUM LIKELIHOOD
FLAT MODEL
44.0312
0.36747
0.34
0.29
5.00
0.32
0.33
2.00
44.83
59
3469
23
0
3387
0.006
1.4
25.8
0.82
1.39
1.50
2.17
2.00
2.15
2.00
3.14
2.50
0.352
0.017
0.312
2.13
411
3613
6
10.2
76.3
10.0
2.0
50.0
2ZDC
29758
0.037
1
1.8
93.8
0.098
2.0
2.07
2512
1.8
79.2
refinement
CNS
1.1
data collection
HKL-2000
data reduction
HKL-2000
data scaling
HKL-2000
phasing
MOLREP
Crystal structure of dUTPase from Sulfolobus tokodaii
1
N
N
1
N
N
1
N
N
2
N
N
3
N
N
2
N
N
2
N
N
4
N
N
4
N
N
4
N
N
A
SER
12
A
SER
14
HELX_P
A
ASN
18
A
ASN
20
1
1
7
A
SER
28
A
SER
30
HELX_P
A
VAL
32
A
VAL
34
5
2
5
A
LYS
100
A
LYS
102
HELX_P
A
ASN
106
A
ASN
108
1
3
7
B
SER
12
B
SER
14
HELX_P
B
ASN
18
B
ASN
20
1
4
7
B
SER
28
B
SER
30
HELX_P
B
VAL
32
B
VAL
34
5
5
5
B
LYS
100
B
LYS
102
HELX_P
B
ASN
106
B
ASN
108
1
6
7
C
SER
12
C
SER
14
HELX_P
C
ASN
18
C
ASN
20
1
7
7
C
SER
28
C
SER
30
HELX_P
C
VAL
32
C
VAL
34
5
8
5
C
LYS
100
C
LYS
102
HELX_P
C
ASN
106
C
ASN
108
1
9
7
disulf
2.023
A
CYS
42
A
SG
CYS
44
1_555
A
CYS
84
A
SG
CYS
86
1_555
disulf
2.027
B
CYS
42
B
SG
CYS
44
1_555
B
CYS
84
B
SG
CYS
86
1_555
disulf
2.021
C
CYS
42
C
SG
CYS
44
1_555
C
CYS
84
C
SG
CYS
86
1_555
STRUCTURAL GENOMICS, UNKNOWN FUNCTION
All beta proteins, Hydrolase, Nucleotide metabolism, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, STRUCTURAL GENOMICS, UNKNOWN FUNCTION
A
LEU
55
A
LEU
57
1
A
PRO
56
A
PRO
58
0.08
B
LEU
55
B
LEU
57
1
B
PRO
56
B
PRO
58
0.07
C
LEU
55
C
LEU
57
1
C
PRO
56
C
PRO
58
0.10
Q970G0_SULTO
UNP
1
1
Q970G0
MKGLTEKLMILSHQSIKNLLGKVILNYSEENVRENGYDLRICGDKYYELVQGAELPEKKATLREIEFKERAILSANHTYL
FESCEEFNMPADLAVLITLKSTLARNGFLAPPTVIDAGYKGKVNVAITAVYNSSLKKGMATHHLIFLKLDKPTERLYNGK
YQGGILI
1
167
2ZDC
1
167
Q970G0
A
1
3
169
1
167
2ZDC
1
167
Q970G0
B
1
3
169
1
167
2ZDC
1
167
Q970G0
C
1
3
169
1
expression tag
GLY
-1
2ZDC
A
Q970G0
UNP
1
1
expression tag
HIS
0
2ZDC
A
Q970G0
UNP
2
2
expression tag
GLY
-1
2ZDC
B
Q970G0
UNP
1
2
expression tag
HIS
0
2ZDC
B
Q970G0
UNP
2
3
expression tag
GLY
-1
2ZDC
C
Q970G0
UNP
1
3
expression tag
HIS
0
2ZDC
C
Q970G0
UNP
2
5
6
3
3
5
6
3
5
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
24
A
ILE
26
A
LEU
25
A
LEU
27
A
HIS
77
A
HIS
79
A
ASN
88
A
ASN
90
A
TYR
37
A
TYR
39
A
GLN
51
A
GLN
53
A
LYS
120
A
LYS
122
A
ALA
129
A
ALA
131
A
PHE
108
A
PHE
110
A
LEU
109
A
LEU
111
A
THR
61
A
THR
63
A
GLU
66
A
GLU
68
A
TYR
37
A
TYR
39
A
GLN
51
A
GLN
53
A
HIS
77
A
HIS
79
A
ASN
88
A
ASN
90
A
ALA
140
A
ALA
142
A
LYS
148
A
LYS
150
A
LEU
93
A
LEU
95
A
LEU
99
A
LEU
101
A
THR
113
A
THR
115
A
ILE
115
A
ILE
117
A
GLU
54
A
GLU
56
A
LEU
55
A
LEU
57
B
SER
133
B
SER
135
B
LYS
136
B
LYS
138
B
ARG
70
B
ARG
72
B
LEU
73
B
LEU
75
A
ARG
70
A
ARG
72
A
LEU
73
A
LEU
75
A
SER
133
A
SER
135
A
LYS
136
A
LYS
138
C
GLU
54
C
GLU
56
C
LEU
55
C
LEU
57
B
ILE
24
B
ILE
26
B
LEU
25
B
LEU
27
B
HIS
77
B
HIS
79
B
ASN
88
B
ASN
90
B
TYR
37
B
TYR
39
B
GLN
51
B
GLN
53
B
LYS
120
B
LYS
122
B
ALA
129
B
ALA
131
B
PHE
108
B
PHE
110
B
LEU
109
B
LEU
111
B
THR
61
B
THR
63
B
GLU
66
B
GLU
68
B
TYR
37
B
TYR
39
B
GLN
51
B
GLN
53
B
HIS
77
B
HIS
79
B
ASN
88
B
ASN
90
B
ALA
140
B
ALA
142
B
LYS
148
B
LYS
150
B
LEU
93
B
LEU
95
B
LEU
99
B
LEU
101
B
THR
113
B
THR
115
B
ILE
115
B
ILE
117
B
GLU
54
B
GLU
56
B
LEU
55
B
LEU
57
C
SER
133
C
SER
135
C
LYS
136
C
LYS
138
C
ARG
70
C
ARG
72
C
LEU
73
C
LEU
75
C
ILE
24
C
ILE
26
C
LEU
25
C
LEU
27
C
HIS
77
C
HIS
79
C
ASN
88
C
ASN
90
C
TYR
37
C
TYR
39
C
GLN
51
C
GLN
53
C
LYS
120
C
LYS
122
C
ALA
129
C
ALA
131
C
PHE
108
C
PHE
110
C
LEU
109
C
LEU
111
C
THR
61
C
THR
63
C
GLU
66
C
GLU
68
C
TYR
37
C
TYR
39
C
GLN
51
C
GLN
53
C
HIS
77
C
HIS
79
C
ASN
88
C
ASN
90
C
ALA
140
C
ALA
142
C
LYS
148
C
LYS
150
C
LEU
93
C
LEU
95
C
LEU
99
C
LEU
101
C
THR
113
C
THR
115
C
ILE
115
C
ILE
117
BINDING SITE FOR RESIDUE SO4 B 6245
B
SO4
6245
Software
5
BINDING SITE FOR RESIDUE SO4 C 6246
C
SO4
6246
Software
5
BINDING SITE FOR RESIDUE SO4 A 6247
A
SO4
6247
Software
5
BINDING SITE FOR RESIDUE TRS A 6646
A
TRS
6646
Software
3
A
LYS
59
A
LYS
61
5
1_555
B
THR
102
B
THR
104
5
1_555
B
ARG
105
B
ARG
107
5
1_555
B
ASN
106
B
ASN
108
5
1_555
B
HOH
6262
I
HOH
5
1_555
B
LYS
59
B
LYS
61
5
1_555
C
THR
102
C
THR
104
5
1_555
C
ARG
105
C
ARG
107
5
1_555
C
ASN
106
C
ASN
108
5
1_555
C
HOH
6262
J
HOH
5
1_555
A
THR
102
A
THR
104
5
1_555
A
ARG
105
A
ARG
107
5
1_555
A
ASN
106
A
ASN
108
5
1_555
A
HOH
6666
H
HOH
5
1_555
C
LYS
59
C
LYS
61
5
1_555
A
ASN
76
A
ASN
78
3
1_555
B
ASN
76
B
ASN
78
3
1_555
C
ASN
76
C
ASN
78
3
1_555
1
P 1