0.006115
0.000000
0.001144
0.000000
0.013624
0.000000
0.000000
0.000000
0.009309
0.00000
0.00000
0.00000
Das, K.
Bauman, J.D.
Clark Jr., A.D.
Shatkin, A.J.
Arnold, E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
100.60
90.00
163.533
73.400
109.287
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C22 H18 N6
366.419
4-{[4-({4-[(E)-2-cyanoethenyl]-2,6-dimethylphenyl}amino)pyrimidin-2-yl]amino}benzonitrile
Rilpivirine
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
S
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
N
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
C
N
232
N
C
N
233
N
S
N
234
N
C
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
Y
252
N
C
Y
253
N
C
Y
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
O
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
Y
301
N
C
Y
302
N
N
Y
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
N
307
N
C
Y
308
N
C
N
309
N
C
N
310
N
N
Y
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
N
Y
315
N
C
N
316
N
N
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
Y
322
N
C
N
323
N
N
N
324
N
C
N
325
N
C
N
326
N
C
N
327
N
N
N
328
N
C
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
R
C
N
352
N
O
N
353
N
C
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
N
N
365
S
C
N
366
N
C
N
367
N
O
N
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
N
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
N
N
392
S
C
N
393
N
C
N
394
N
O
N
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
N
402
N
O
N
403
N
O
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
N
N
416
S
C
N
417
N
C
N
418
N
O
N
419
N
C
N
420
N
C
N
421
N
C
N
422
N
O
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
Y
246
N
doub
Y
247
N
sing
Y
248
N
sing
N
249
N
sing
Y
250
N
doub
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
Y
288
N
doub
N
289
N
sing
Y
290
N
sing
Y
291
N
doub
Y
292
N
sing
Y
293
N
sing
Y
294
N
doub
N
295
N
sing
Y
296
N
doub
Y
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
Y
301
N
sing
Y
302
N
doub
Y
303
N
sing
Y
304
N
doub
N
305
N
sing
N
306
N
sing
Y
307
N
doub
Y
308
N
sing
N
309
N
sing
Y
310
N
sing
Y
311
N
doub
Y
312
N
sing
Y
313
N
doub
N
314
N
trip
N
315
E
doub
N
316
N
sing
N
317
N
trip
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
Y
363
N
doub
Y
364
N
sing
Y
365
N
sing
N
366
N
sing
Y
367
N
doub
Y
368
N
sing
Y
369
N
sing
N
370
N
sing
Y
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
Y
391
N
doub
Y
392
N
sing
Y
393
N
sing
N
394
N
sing
Y
395
N
doub
N
396
N
sing
Y
397
N
doub
N
398
N
sing
Y
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
doub
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
US
Proc.Natl.Acad.Sci.Usa
PNASA6
0040
0027-8424
105
1466
1471
10.1073/pnas.0711209105
18230722
High-resolution structures of HIV-1 reverse transcriptase/TMC278 complexes: Strategic flexibility explains potency against resistance mutations.
2008
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
365
77
89
10.1016/j.jmb.2006.08.097
17056061
Crystal structures of clinically relevant Lys103Asn/Tyr181Cys double mutant HIV-1 reverse transcriptase in complexes with ATP and non-nucleoside inhibitor HBY 097.
2007
US
J.Med.Chem.
JMCMAR
0151
0022-2623
47
2550
2560
10.1021/jm030558s
15115397
Roles of conformational and positional adaptability in structure-based design of TMC125-R165335 (etravirine) and related non-nucleoside reverse transcriptase inhibitors that are highly potent and effective against wild-type and drug-resistant HIV-1 variants.
2004
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
264
1085
1100
10.1006/jmbi.1996.0698
9000632
Crystal structures of 8-Cl and 9-Cl TIBO complexed with wild-type HIV-1 RT and 8-Cl TIBO complexed with the Tyr181Cys HIV-1 RT drug-resistant mutant.
1996
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
309
437
445
10.1006/jmbi.2001.4648
11371163
The Lys103Asn mutation of HIV-1 RT: a novel mechanism of drug resistance.
2001
10.2210/pdb2ze2/pdb
pdb_00002ze2
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2006-05-28
ADSC QUANTUM 4
GRAPHITE
SINGLE WAVELENGTH
M
x-ray
1
0.9176
1.0
F1
CHESS
0.9176
SYNCHROTRON
CHESS BEAMLINE F1
63974.160
Reverse transcriptase/ribonuclease H
2.7.7.49, 2.7.7.7, 3.1.26.4
P66
L100I, K103N, K172A, K173A, C280S
1
man
polymer
50039.488
p51 RT
P51
C280S
1
man
polymer
366.419
4-{[4-({4-[(E)-2-cyanoethenyl]-2,6-dimethylphenyl}amino)pyrimidin-2-yl]amino}benzonitrile
1
syn
non-polymer
P66 RT, REVERSE TRANSCRIPTASE P66 SUBUNIT
REVERSE TRANSCRIPTASE P51 SUBUNIT
no
no
MVPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFR
ELNKRTQDFWEVQLGIPHPAGIKKNKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPA
IFQSSMTKILEPFAAQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDK
WTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVY
YDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETW
ETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTE
LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG
MVPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFR
ELNKRTQDFWEVQLGIPHPAGIKKNKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPA
IFQSSMTKILEPFAAQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDK
WTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVY
YDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETW
ETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTE
LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG
A
polypeptide(L)
no
no
PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFREL
NKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIF
QSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWT
VQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYD
PSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWET
WWTEYWQATWIPEWEFVNTPPLVKLWYQ
PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFREL
NKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIF
QSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWT
VQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYD
PSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWET
WWTEYWQATWIPEWEFVNTPPLVKLWYQ
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
n
n
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n
n
n
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n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
n
n
n
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n
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n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
n
n
n
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n
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n
n
n
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n
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n
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n
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n
n
n
n
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n
n
n
n
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n
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n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
n
n
n
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n
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n
n
Lentivirus
Escherichia
sample
GAG-POL
11676
Human immunodeficiency virus 1
562
Escherichia coli
BH10 ISOLATE
PLASMID
PRT52A
Lentivirus
Escherichia
sample
GAG-POL
11676
Human immunodeficiency virus 1
562
Escherichia coli
BH10 ISOLATE
PLASMID
PRT52A
1
2.83
56.50
VAPOR DIFFUSION, HANGING DROP
6.8
PEG 8000, AMMONIUM SULFATE, MGCL2, IMIDAZOLE, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
database_2
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Non-polymer description
Non-polymer description
Database references
Derived calculations
Data collection
Refinement description
1
0
2008-02-12
1
1
2011-07-13
1
2
2012-07-18
1
3
2015-06-17
1
4
2021-11-10
1
5
2023-11-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
PDBJ
Y
PDBJ
2007-12-05
REL
REL
T27
4-{[4-({4-[(E)-2-cyanoethenyl]-2,6-dimethylphenyl}amino)pyrimidin-2-yl]amino}benzonitrile
2ZD1
PDB
experimental model
278
1
3
T27
T27
556
A
n
1
-1
A
n
2
0
A
PRO
1
n
3
PRO
1
A
ILE
2
n
4
ILE
2
A
SER
3
n
5
SER
3
A
PRO
4
n
6
PRO
4
A
ILE
5
n
7
ILE
5
A
GLU
6
n
8
GLU
6
A
THR
7
n
9
THR
7
A
VAL
8
n
10
VAL
8
A
PRO
9
n
11
PRO
9
A
VAL
10
n
12
VAL
10
A
LYS
11
n
13
LYS
11
A
LEU
12
n
14
LEU
12
A
LYS
13
n
15
LYS
13
A
PRO
14
n
16
PRO
14
A
GLY
15
n
17
GLY
15
A
MET
16
n
18
MET
16
A
ASP
17
n
19
ASP
17
A
GLY
18
n
20
GLY
18
A
PRO
19
n
21
PRO
19
A
LYS
20
n
22
LYS
20
A
VAL
21
n
23
VAL
21
A
LYS
22
n
24
LYS
22
A
GLN
23
n
25
GLN
23
A
TRP
24
n
26
TRP
24
A
PRO
25
n
27
PRO
25
A
LEU
26
n
28
LEU
26
A
THR
27
n
29
THR
27
A
GLU
28
n
30
GLU
28
A
GLU
29
n
31
GLU
29
A
LYS
30
n
32
LYS
30
A
ILE
31
n
33
ILE
31
A
LYS
32
n
34
LYS
32
A
ALA
33
n
35
ALA
33
A
LEU
34
n
36
LEU
34
A
VAL
35
n
37
VAL
35
A
GLU
36
n
38
GLU
36
A
ILE
37
n
39
ILE
37
A
CYS
38
n
40
CYS
38
A
THR
39
n
41
THR
39
A
GLU
40
n
42
GLU
40
A
MET
41
n
43
MET
41
A
GLU
42
n
44
GLU
42
A
LYS
43
n
45
LYS
43
A
GLU
44
n
46
GLU
44
A
GLY
45
n
47
GLY
45
A
LYS
46
n
48
LYS
46
A
ILE
47
n
49
ILE
47
A
SER
48
n
50
SER
48
A
LYS
49
n
51
LYS
49
A
ILE
50
n
52
ILE
50
A
GLY
51
n
53
GLY
51
A
PRO
52
n
54
PRO
52
A
GLU
53
n
55
GLU
53
A
ASN
54
n
56
ASN
54
A
PRO
55
n
57
PRO
55
A
TYR
56
n
58
TYR
56
A
ASN
57
n
59
ASN
57
A
THR
58
n
60
THR
58
A
PRO
59
n
61
PRO
59
A
VAL
60
n
62
VAL
60
A
PHE
61
n
63
PHE
61
A
ALA
62
n
64
ALA
62
A
ILE
63
n
65
ILE
63
A
LYS
64
n
66
LYS
64
A
LYS
65
n
67
LYS
65
A
LYS
66
n
68
LYS
66
A
ASP
67
n
69
ASP
67
A
SER
68
n
70
SER
68
A
THR
69
n
71
THR
69
A
LYS
70
n
72
LYS
70
A
TRP
71
n
73
TRP
71
A
ARG
72
n
74
ARG
72
A
LYS
73
n
75
LYS
73
A
LEU
74
n
76
LEU
74
A
VAL
75
n
77
VAL
75
A
ASP
76
n
78
ASP
76
A
PHE
77
n
79
PHE
77
A
ARG
78
n
80
ARG
78
A
GLU
79
n
81
GLU
79
A
LEU
80
n
82
LEU
80
A
ASN
81
n
83
ASN
81
A
LYS
82
n
84
LYS
82
A
ARG
83
n
85
ARG
83
A
THR
84
n
86
THR
84
A
GLN
85
n
87
GLN
85
A
ASP
86
n
88
ASP
86
A
PHE
87
n
89
PHE
87
A
TRP
88
n
90
TRP
88
A
GLU
89
n
91
GLU
89
A
VAL
90
n
92
VAL
90
A
GLN
91
n
93
GLN
91
A
LEU
92
n
94
LEU
92
A
GLY
93
n
95
GLY
93
A
ILE
94
n
96
ILE
94
A
PRO
95
n
97
PRO
95
A
HIS
96
n
98
HIS
96
A
PRO
97
n
99
PRO
97
A
ALA
98
n
100
ALA
98
A
GLY
99
n
101
GLY
99
A
ILE
100
n
102
ILE
100
A
LYS
101
n
103
LYS
101
A
LYS
102
n
104
LYS
102
A
ASN
103
n
105
ASN
103
A
LYS
104
n
106
LYS
104
A
SER
105
n
107
SER
105
A
VAL
106
n
108
VAL
106
A
THR
107
n
109
THR
107
A
VAL
108
n
110
VAL
108
A
LEU
109
n
111
LEU
109
A
ASP
110
n
112
ASP
110
A
VAL
111
n
113
VAL
111
A
GLY
112
n
114
GLY
112
A
ASP
113
n
115
ASP
113
A
ALA
114
n
116
ALA
114
A
TYR
115
n
117
TYR
115
A
PHE
116
n
118
PHE
116
A
SER
117
n
119
SER
117
A
VAL
118
n
120
VAL
118
A
PRO
119
n
121
PRO
119
A
LEU
120
n
122
LEU
120
A
ASP
121
n
123
ASP
121
A
GLU
122
n
124
GLU
122
A
ASP
123
n
125
ASP
123
A
PHE
124
n
126
PHE
124
A
ARG
125
n
127
ARG
125
A
LYS
126
n
128
LYS
126
A
TYR
127
n
129
TYR
127
A
THR
128
n
130
THR
128
A
ALA
129
n
131
ALA
129
A
PHE
130
n
132
PHE
130
A
THR
131
n
133
THR
131
A
ILE
132
n
134
ILE
132
A
PRO
133
n
135
PRO
133
A
SER
134
n
136
SER
134
A
ILE
135
n
137
ILE
135
A
ASN
136
n
138
ASN
136
A
ASN
137
n
139
ASN
137
A
GLU
138
n
140
GLU
138
A
THR
139
n
141
THR
139
A
PRO
140
n
142
PRO
140
A
GLY
141
n
143
GLY
141
A
ILE
142
n
144
ILE
142
A
ARG
143
n
145
ARG
143
A
TYR
144
n
146
TYR
144
A
GLN
145
n
147
GLN
145
A
TYR
146
n
148
TYR
146
A
ASN
147
n
149
ASN
147
A
VAL
148
n
150
VAL
148
A
LEU
149
n
151
LEU
149
A
PRO
150
n
152
PRO
150
A
GLN
151
n
153
GLN
151
A
GLY
152
n
154
GLY
152
A
TRP
153
n
155
TRP
153
A
LYS
154
n
156
LYS
154
A
GLY
155
n
157
GLY
155
A
SER
156
n
158
SER
156
A
PRO
157
n
159
PRO
157
A
ALA
158
n
160
ALA
158
A
ILE
159
n
161
ILE
159
A
PHE
160
n
162
PHE
160
A
GLN
161
n
163
GLN
161
A
SER
162
n
164
SER
162
A
SER
163
n
165
SER
163
A
MET
164
n
166
MET
164
A
THR
165
n
167
THR
165
A
LYS
166
n
168
LYS
166
A
ILE
167
n
169
ILE
167
A
LEU
168
n
170
LEU
168
A
GLU
169
n
171
GLU
169
A
PRO
170
n
172
PRO
170
A
PHE
171
n
173
PHE
171
A
ALA
172
n
174
ALA
172
A
ALA
173
n
175
ALA
173
A
GLN
174
n
176
GLN
174
A
ASN
175
n
177
ASN
175
A
PRO
176
n
178
PRO
176
A
ASP
177
n
179
ASP
177
A
ILE
178
n
180
ILE
178
A
VAL
179
n
181
VAL
179
A
ILE
180
n
182
ILE
180
A
TYR
181
n
183
TYR
181
A
GLN
182
n
184
GLN
182
A
TYR
183
n
185
TYR
183
A
MET
184
n
186
MET
184
A
ASP
185
n
187
ASP
185
A
ASP
186
n
188
ASP
186
A
LEU
187
n
189
LEU
187
A
TYR
188
n
190
TYR
188
A
VAL
189
n
191
VAL
189
A
GLY
190
n
192
GLY
190
A
SER
191
n
193
SER
191
A
ASP
192
n
194
ASP
192
A
LEU
193
n
195
LEU
193
A
GLU
194
n
196
GLU
194
A
ILE
195
n
197
ILE
195
A
GLY
196
n
198
GLY
196
A
GLN
197
n
199
GLN
197
A
HIS
198
n
200
HIS
198
A
ARG
199
n
201
ARG
199
A
THR
200
n
202
THR
200
A
LYS
201
n
203
LYS
201
A
ILE
202
n
204
ILE
202
A
GLU
203
n
205
GLU
203
A
GLU
204
n
206
GLU
204
A
LEU
205
n
207
LEU
205
A
ARG
206
n
208
ARG
206
A
GLN
207
n
209
GLN
207
A
HIS
208
n
210
HIS
208
A
LEU
209
n
211
LEU
209
A
LEU
210
n
212
LEU
210
A
ARG
211
n
213
ARG
211
A
TRP
212
n
214
TRP
212
A
GLY
213
n
215
GLY
213
A
LEU
214
n
216
LEU
214
A
THR
215
n
217
THR
215
A
THR
216
n
218
THR
216
A
PRO
217
n
219
PRO
217
A
ASP
218
n
220
ASP
218
A
LYS
219
n
221
LYS
219
A
LYS
220
n
222
LYS
220
A
HIS
221
n
223
HIS
221
A
GLN
222
n
224
GLN
222
A
LYS
223
n
225
LYS
223
A
GLU
224
n
226
GLU
224
A
PRO
225
n
227
PRO
225
A
PRO
226
n
228
PRO
226
A
PHE
227
n
229
PHE
227
A
LEU
228
n
230
LEU
228
A
TRP
229
n
231
TRP
229
A
MET
230
n
232
MET
230
A
GLY
231
n
233
GLY
231
A
TYR
232
n
234
TYR
232
A
GLU
233
n
235
GLU
233
A
LEU
234
n
236
LEU
234
A
HIS
235
n
237
HIS
235
A
PRO
236
n
238
PRO
236
A
ASP
237
n
239
ASP
237
A
LYS
238
n
240
LYS
238
A
TRP
239
n
241
TRP
239
A
THR
240
n
242
THR
240
A
VAL
241
n
243
VAL
241
A
GLN
242
n
244
GLN
242
A
PRO
243
n
245
PRO
243
A
ILE
244
n
246
ILE
244
A
VAL
245
n
247
VAL
245
A
LEU
246
n
248
LEU
246
A
PRO
247
n
249
PRO
247
A
GLU
248
n
250
GLU
248
A
LYS
249
n
251
LYS
249
A
ASP
250
n
252
ASP
250
A
SER
251
n
253
SER
251
A
TRP
252
n
254
TRP
252
A
THR
253
n
255
THR
253
A
VAL
254
n
256
VAL
254
A
ASN
255
n
257
ASN
255
A
ASP
256
n
258
ASP
256
A
ILE
257
n
259
ILE
257
A
GLN
258
n
260
GLN
258
A
LYS
259
n
261
LYS
259
A
LEU
260
n
262
LEU
260
A
VAL
261
n
263
VAL
261
A
GLY
262
n
264
GLY
262
A
LYS
263
n
265
LYS
263
A
LEU
264
n
266
LEU
264
A
ASN
265
n
267
ASN
265
A
TRP
266
n
268
TRP
266
A
ALA
267
n
269
ALA
267
A
SER
268
n
270
SER
268
A
GLN
269
n
271
GLN
269
A
ILE
270
n
272
ILE
270
A
TYR
271
n
273
TYR
271
A
PRO
272
n
274
PRO
272
A
GLY
273
n
275
GLY
273
A
ILE
274
n
276
ILE
274
A
LYS
275
n
277
LYS
275
A
VAL
276
n
278
VAL
276
A
ARG
277
n
279
ARG
277
A
GLN
278
n
280
GLN
278
A
LEU
279
n
281
LEU
279
A
SER
280
n
282
SER
280
A
LYS
281
n
283
LYS
281
A
LEU
282
n
284
LEU
282
A
LEU
283
n
285
LEU
283
A
ARG
284
n
286
ARG
284
A
GLY
285
n
287
GLY
285
A
THR
286
n
288
THR
286
A
LYS
287
n
289
LYS
287
A
ALA
288
n
290
ALA
288
A
LEU
289
n
291
LEU
289
A
THR
290
n
292
THR
290
A
GLU
291
n
293
GLU
291
A
VAL
292
n
294
VAL
292
A
ILE
293
n
295
ILE
293
A
PRO
294
n
296
PRO
294
A
LEU
295
n
297
LEU
295
A
THR
296
n
298
THR
296
A
GLU
297
n
299
GLU
297
A
GLU
298
n
300
GLU
298
A
ALA
299
n
301
ALA
299
A
GLU
300
n
302
GLU
300
A
LEU
301
n
303
LEU
301
A
GLU
302
n
304
GLU
302
A
LEU
303
n
305
LEU
303
A
ALA
304
n
306
ALA
304
A
GLU
305
n
307
GLU
305
A
ASN
306
n
308
ASN
306
A
ARG
307
n
309
ARG
307
A
GLU
308
n
310
GLU
308
A
ILE
309
n
311
ILE
309
A
LEU
310
n
312
LEU
310
A
LYS
311
n
313
LYS
311
A
GLU
312
n
314
GLU
312
A
PRO
313
n
315
PRO
313
A
VAL
314
n
316
VAL
314
A
HIS
315
n
317
HIS
315
A
GLY
316
n
318
GLY
316
A
VAL
317
n
319
VAL
317
A
TYR
318
n
320
TYR
318
A
TYR
319
n
321
TYR
319
A
ASP
320
n
322
ASP
320
A
PRO
321
n
323
PRO
321
A
SER
322
n
324
SER
322
A
LYS
323
n
325
LYS
323
A
ASP
324
n
326
ASP
324
A
LEU
325
n
327
LEU
325
A
ILE
326
n
328
ILE
326
A
ALA
327
n
329
ALA
327
A
GLU
328
n
330
GLU
328
A
ILE
329
n
331
ILE
329
A
GLN
330
n
332
GLN
330
A
LYS
331
n
333
LYS
331
A
GLN
332
n
334
GLN
332
A
GLY
333
n
335
GLY
333
A
GLN
334
n
336
GLN
334
A
GLY
335
n
337
GLY
335
A
GLN
336
n
338
GLN
336
A
TRP
337
n
339
TRP
337
A
THR
338
n
340
THR
338
A
TYR
339
n
341
TYR
339
A
GLN
340
n
342
GLN
340
A
ILE
341
n
343
ILE
341
A
TYR
342
n
344
TYR
342
A
GLN
343
n
345
GLN
343
A
GLU
344
n
346
GLU
344
A
PRO
345
n
347
PRO
345
A
PHE
346
n
348
PHE
346
A
LYS
347
n
349
LYS
347
A
ASN
348
n
350
ASN
348
A
LEU
349
n
351
LEU
349
A
LYS
350
n
352
LYS
350
A
THR
351
n
353
THR
351
A
GLY
352
n
354
GLY
352
A
LYS
353
n
355
LYS
353
A
TYR
354
n
356
TYR
354
A
ALA
355
n
357
ALA
355
A
ARG
356
n
358
ARG
356
A
MET
357
n
359
MET
357
A
ARG
358
n
360
ARG
358
A
GLY
359
n
361
GLY
359
A
ALA
360
n
362
ALA
360
A
HIS
361
n
363
HIS
361
A
THR
362
n
364
THR
362
A
ASN
363
n
365
ASN
363
A
ASP
364
n
366
ASP
364
A
VAL
365
n
367
VAL
365
A
LYS
366
n
368
LYS
366
A
GLN
367
n
369
GLN
367
A
LEU
368
n
370
LEU
368
A
THR
369
n
371
THR
369
A
GLU
370
n
372
GLU
370
A
ALA
371
n
373
ALA
371
A
VAL
372
n
374
VAL
372
A
GLN
373
n
375
GLN
373
A
LYS
374
n
376
LYS
374
A
ILE
375
n
377
ILE
375
A
THR
376
n
378
THR
376
A
THR
377
n
379
THR
377
A
GLU
378
n
380
GLU
378
A
SER
379
n
381
SER
379
A
ILE
380
n
382
ILE
380
A
VAL
381
n
383
VAL
381
A
ILE
382
n
384
ILE
382
A
TRP
383
n
385
TRP
383
A
GLY
384
n
386
GLY
384
A
LYS
385
n
387
LYS
385
A
THR
386
n
388
THR
386
A
PRO
387
n
389
PRO
387
A
LYS
388
n
390
LYS
388
A
PHE
389
n
391
PHE
389
A
LYS
390
n
392
LYS
390
A
LEU
391
n
393
LEU
391
A
PRO
392
n
394
PRO
392
A
ILE
393
n
395
ILE
393
A
GLN
394
n
396
GLN
394
A
LYS
395
n
397
LYS
395
A
GLU
396
n
398
GLU
396
A
THR
397
n
399
THR
397
A
TRP
398
n
400
TRP
398
A
GLU
399
n
401
GLU
399
A
THR
400
n
402
THR
400
A
TRP
401
n
403
TRP
401
A
TRP
402
n
404
TRP
402
A
THR
403
n
405
THR
403
A
GLU
404
n
406
GLU
404
A
TYR
405
n
407
TYR
405
A
TRP
406
n
408
TRP
406
A
GLN
407
n
409
GLN
407
A
ALA
408
n
410
ALA
408
A
THR
409
n
411
THR
409
A
TRP
410
n
412
TRP
410
A
ILE
411
n
413
ILE
411
A
PRO
412
n
414
PRO
412
A
GLU
413
n
415
GLU
413
A
TRP
414
n
416
TRP
414
A
GLU
415
n
417
GLU
415
A
PHE
416
n
418
PHE
416
A
VAL
417
n
419
VAL
417
A
ASN
418
n
420
ASN
418
A
THR
419
n
421
THR
419
A
PRO
420
n
422
PRO
420
A
PRO
421
n
423
PRO
421
A
LEU
422
n
424
LEU
422
A
VAL
423
n
425
VAL
423
A
LYS
424
n
426
LYS
424
A
LEU
425
n
427
LEU
425
A
TRP
426
n
428
TRP
426
A
TYR
427
n
429
TYR
427
A
GLN
428
n
430
GLN
428
A
LEU
429
n
431
LEU
429
A
GLU
430
n
432
GLU
430
A
LYS
431
n
433
LYS
431
A
GLU
432
n
434
GLU
432
A
PRO
433
n
435
PRO
433
A
ILE
434
n
436
ILE
434
A
VAL
435
n
437
VAL
435
A
GLY
436
n
438
GLY
436
A
ALA
437
n
439
ALA
437
A
GLU
438
n
440
GLU
438
A
THR
439
n
441
THR
439
A
PHE
440
n
442
PHE
440
A
TYR
441
n
443
TYR
441
A
VAL
442
n
444
VAL
442
A
ASP
443
n
445
ASP
443
A
GLY
444
n
446
GLY
444
A
ALA
445
n
447
ALA
445
A
ALA
446
n
448
ALA
446
A
ASN
447
n
449
ASN
447
A
ARG
448
n
450
ARG
448
A
GLU
449
n
451
GLU
449
A
THR
450
n
452
THR
450
A
LYS
451
n
453
LYS
451
A
LEU
452
n
454
LEU
452
A
GLY
453
n
455
GLY
453
A
LYS
454
n
456
LYS
454
A
ALA
455
n
457
ALA
455
A
GLY
456
n
458
GLY
456
A
TYR
457
n
459
TYR
457
A
VAL
458
n
460
VAL
458
A
THR
459
n
461
THR
459
A
ASN
460
n
462
ASN
460
A
LYS
461
n
463
LYS
461
A
GLY
462
n
464
GLY
462
A
ARG
463
n
465
ARG
463
A
GLN
464
n
466
GLN
464
A
LYS
465
n
467
LYS
465
A
VAL
466
n
468
VAL
466
A
VAL
467
n
469
VAL
467
A
PRO
468
n
470
PRO
468
A
LEU
469
n
471
LEU
469
A
THR
470
n
472
THR
470
A
ASN
471
n
473
ASN
471
A
THR
472
n
474
THR
472
A
THR
473
n
475
THR
473
A
ASN
474
n
476
ASN
474
A
GLN
475
n
477
GLN
475
A
LYS
476
n
478
LYS
476
A
THR
477
n
479
THR
477
A
GLU
478
n
480
GLU
478
A
LEU
479
n
481
LEU
479
A
GLN
480
n
482
GLN
480
A
ALA
481
n
483
ALA
481
A
ILE
482
n
484
ILE
482
A
TYR
483
n
485
TYR
483
A
LEU
484
n
486
LEU
484
A
ALA
485
n
487
ALA
485
A
LEU
486
n
488
LEU
486
A
GLN
487
n
489
GLN
487
A
ASP
488
n
490
ASP
488
A
SER
489
n
491
SER
489
A
GLY
490
n
492
GLY
490
A
LEU
491
n
493
LEU
491
A
GLU
492
n
494
GLU
492
A
VAL
493
n
495
VAL
493
A
ASN
494
n
496
ASN
494
A
ILE
495
n
497
ILE
495
A
VAL
496
n
498
VAL
496
A
THR
497
n
499
THR
497
A
ASP
498
n
500
ASP
498
A
SER
499
n
501
SER
499
A
GLN
500
n
502
GLN
500
A
TYR
501
n
503
TYR
501
A
ALA
502
n
504
ALA
502
A
LEU
503
n
505
LEU
503
A
GLY
504
n
506
GLY
504
A
ILE
505
n
507
ILE
505
A
ILE
506
n
508
ILE
506
A
GLN
507
n
509
GLN
507
A
ALA
508
n
510
ALA
508
A
GLN
509
n
511
GLN
509
A
PRO
510
n
512
PRO
510
A
ASP
511
n
513
ASP
511
A
LYS
512
n
514
LYS
512
A
SER
513
n
515
SER
513
A
GLU
514
n
516
GLU
514
A
SER
515
n
517
SER
515
A
GLU
516
n
518
GLU
516
A
LEU
517
n
519
LEU
517
A
VAL
518
n
520
VAL
518
A
ASN
519
n
521
ASN
519
A
GLN
520
n
522
GLN
520
A
ILE
521
n
523
ILE
521
A
ILE
522
n
524
ILE
522
A
GLU
523
n
525
GLU
523
A
GLN
524
n
526
GLN
524
A
LEU
525
n
527
LEU
525
A
ILE
526
n
528
ILE
526
A
LYS
527
n
529
LYS
527
A
LYS
528
n
530
LYS
528
A
GLU
529
n
531
GLU
529
A
LYS
530
n
532
LYS
530
A
VAL
531
n
533
VAL
531
A
TYR
532
n
534
TYR
532
A
LEU
533
n
535
LEU
533
A
ALA
534
n
536
ALA
534
A
TRP
535
n
537
TRP
535
A
VAL
536
n
538
VAL
536
A
PRO
537
n
539
PRO
537
A
ALA
538
n
540
ALA
538
A
HIS
539
n
541
HIS
539
A
LYS
540
n
542
LYS
540
A
GLY
541
n
543
GLY
541
A
ILE
542
n
544
ILE
542
A
GLY
543
n
545
GLY
543
A
GLY
544
n
546
GLY
544
A
ASN
545
n
547
ASN
545
A
GLU
546
n
548
GLU
546
A
GLN
547
n
549
GLN
547
A
VAL
548
n
550
VAL
548
A
ASP
549
n
551
ASP
549
A
LYS
550
n
552
LYS
550
A
LEU
551
n
553
LEU
551
A
VAL
552
n
554
VAL
552
A
n
555
553
A
n
556
554
A
n
557
555
A
PRO
1
n
1
PRO
1
B
ILE
2
n
2
ILE
2
B
SER
3
n
3
SER
3
B
PRO
4
n
4
PRO
4
B
ILE
5
n
5
ILE
5
B
GLU
6
n
6
GLU
6
B
THR
7
n
7
THR
7
B
VAL
8
n
8
VAL
8
B
PRO
9
n
9
PRO
9
B
VAL
10
n
10
VAL
10
B
LYS
11
n
11
LYS
11
B
LEU
12
n
12
LEU
12
B
LYS
13
n
13
LYS
13
B
PRO
14
n
14
PRO
14
B
GLY
15
n
15
GLY
15
B
MET
16
n
16
MET
16
B
ASP
17
n
17
ASP
17
B
GLY
18
n
18
GLY
18
B
PRO
19
n
19
PRO
19
B
LYS
20
n
20
LYS
20
B
VAL
21
n
21
VAL
21
B
LYS
22
n
22
LYS
22
B
GLN
23
n
23
GLN
23
B
TRP
24
n
24
TRP
24
B
PRO
25
n
25
PRO
25
B
LEU
26
n
26
LEU
26
B
THR
27
n
27
THR
27
B
GLU
28
n
28
GLU
28
B
GLU
29
n
29
GLU
29
B
LYS
30
n
30
LYS
30
B
ILE
31
n
31
ILE
31
B
LYS
32
n
32
LYS
32
B
ALA
33
n
33
ALA
33
B
LEU
34
n
34
LEU
34
B
VAL
35
n
35
VAL
35
B
GLU
36
n
36
GLU
36
B
ILE
37
n
37
ILE
37
B
CYS
38
n
38
CYS
38
B
THR
39
n
39
THR
39
B
GLU
40
n
40
GLU
40
B
MET
41
n
41
MET
41
B
GLU
42
n
42
GLU
42
B
LYS
43
n
43
LYS
43
B
GLU
44
n
44
GLU
44
B
GLY
45
n
45
GLY
45
B
LYS
46
n
46
LYS
46
B
ILE
47
n
47
ILE
47
B
SER
48
n
48
SER
48
B
LYS
49
n
49
LYS
49
B
ILE
50
n
50
ILE
50
B
GLY
51
n
51
GLY
51
B
PRO
52
n
52
PRO
52
B
GLU
53
n
53
GLU
53
B
ASN
54
n
54
ASN
54
B
PRO
55
n
55
PRO
55
B
TYR
56
n
56
TYR
56
B
ASN
57
n
57
ASN
57
B
THR
58
n
58
THR
58
B
PRO
59
n
59
PRO
59
B
VAL
60
n
60
VAL
60
B
PHE
61
n
61
PHE
61
B
ALA
62
n
62
ALA
62
B
ILE
63
n
63
ILE
63
B
LYS
64
n
64
LYS
64
B
LYS
65
n
65
LYS
65
B
LYS
66
n
66
LYS
66
B
ASP
67
n
67
ASP
67
B
SER
68
n
68
SER
68
B
THR
69
n
69
THR
69
B
LYS
70
n
70
LYS
70
B
TRP
71
n
71
TRP
71
B
ARG
72
n
72
ARG
72
B
LYS
73
n
73
LYS
73
B
LEU
74
n
74
LEU
74
B
VAL
75
n
75
VAL
75
B
ASP
76
n
76
ASP
76
B
PHE
77
n
77
PHE
77
B
ARG
78
n
78
ARG
78
B
GLU
79
n
79
GLU
79
B
LEU
80
n
80
LEU
80
B
ASN
81
n
81
ASN
81
B
LYS
82
n
82
LYS
82
B
ARG
83
n
83
ARG
83
B
THR
84
n
84
THR
84
B
GLN
85
n
85
GLN
85
B
ASP
86
n
86
ASP
86
B
PHE
87
n
87
PHE
87
B
TRP
88
n
88
TRP
88
B
GLU
89
n
89
GLU
89
B
VAL
90
n
90
VAL
90
B
GLN
91
n
91
GLN
91
B
LEU
92
n
92
LEU
92
B
GLY
93
n
93
GLY
93
B
ILE
94
n
94
ILE
94
B
PRO
95
n
95
PRO
95
B
HIS
96
n
96
HIS
96
B
PRO
97
n
97
PRO
97
B
ALA
98
n
98
ALA
98
B
GLY
99
n
99
GLY
99
B
LEU
100
n
100
LEU
100
B
LYS
101
n
101
LYS
101
B
LYS
102
n
102
LYS
102
B
LYS
103
n
103
LYS
103
B
LYS
104
n
104
LYS
104
B
SER
105
n
105
SER
105
B
VAL
106
n
106
VAL
106
B
THR
107
n
107
THR
107
B
VAL
108
n
108
VAL
108
B
LEU
109
n
109
LEU
109
B
ASP
110
n
110
ASP
110
B
VAL
111
n
111
VAL
111
B
GLY
112
n
112
GLY
112
B
ASP
113
n
113
ASP
113
B
ALA
114
n
114
ALA
114
B
TYR
115
n
115
TYR
115
B
PHE
116
n
116
PHE
116
B
SER
117
n
117
SER
117
B
VAL
118
n
118
VAL
118
B
PRO
119
n
119
PRO
119
B
LEU
120
n
120
LEU
120
B
ASP
121
n
121
ASP
121
B
GLU
122
n
122
GLU
122
B
ASP
123
n
123
ASP
123
B
PHE
124
n
124
PHE
124
B
ARG
125
n
125
ARG
125
B
LYS
126
n
126
LYS
126
B
TYR
127
n
127
TYR
127
B
THR
128
n
128
THR
128
B
ALA
129
n
129
ALA
129
B
PHE
130
n
130
PHE
130
B
THR
131
n
131
THR
131
B
ILE
132
n
132
ILE
132
B
PRO
133
n
133
PRO
133
B
SER
134
n
134
SER
134
B
ILE
135
n
135
ILE
135
B
ASN
136
n
136
ASN
136
B
ASN
137
n
137
ASN
137
B
GLU
138
n
138
GLU
138
B
THR
139
n
139
THR
139
B
PRO
140
n
140
PRO
140
B
GLY
141
n
141
GLY
141
B
ILE
142
n
142
ILE
142
B
ARG
143
n
143
ARG
143
B
TYR
144
n
144
TYR
144
B
GLN
145
n
145
GLN
145
B
TYR
146
n
146
TYR
146
B
ASN
147
n
147
ASN
147
B
VAL
148
n
148
VAL
148
B
LEU
149
n
149
LEU
149
B
PRO
150
n
150
PRO
150
B
GLN
151
n
151
GLN
151
B
GLY
152
n
152
GLY
152
B
TRP
153
n
153
TRP
153
B
LYS
154
n
154
LYS
154
B
GLY
155
n
155
GLY
155
B
SER
156
n
156
SER
156
B
PRO
157
n
157
PRO
157
B
ALA
158
n
158
ALA
158
B
ILE
159
n
159
ILE
159
B
PHE
160
n
160
PHE
160
B
GLN
161
n
161
GLN
161
B
SER
162
n
162
SER
162
B
SER
163
n
163
SER
163
B
MET
164
n
164
MET
164
B
THR
165
n
165
THR
165
B
LYS
166
n
166
LYS
166
B
ILE
167
n
167
ILE
167
B
LEU
168
n
168
LEU
168
B
GLU
169
n
169
GLU
169
B
PRO
170
n
170
PRO
170
B
PHE
171
n
171
PHE
171
B
LYS
172
n
172
LYS
172
B
LYS
173
n
173
LYS
173
B
GLN
174
n
174
GLN
174
B
ASN
175
n
175
ASN
175
B
PRO
176
n
176
PRO
176
B
ASP
177
n
177
ASP
177
B
ILE
178
n
178
ILE
178
B
VAL
179
n
179
VAL
179
B
ILE
180
n
180
ILE
180
B
TYR
181
n
181
TYR
181
B
GLN
182
n
182
GLN
182
B
TYR
183
n
183
TYR
183
B
MET
184
n
184
MET
184
B
ASP
185
n
185
ASP
185
B
ASP
186
n
186
ASP
186
B
LEU
187
n
187
LEU
187
B
TYR
188
n
188
TYR
188
B
VAL
189
n
189
VAL
189
B
GLY
190
n
190
GLY
190
B
SER
191
n
191
SER
191
B
ASP
192
n
192
ASP
192
B
LEU
193
n
193
LEU
193
B
GLU
194
n
194
GLU
194
B
ILE
195
n
195
ILE
195
B
GLY
196
n
196
GLY
196
B
GLN
197
n
197
GLN
197
B
HIS
198
n
198
HIS
198
B
ARG
199
n
199
ARG
199
B
THR
200
n
200
THR
200
B
LYS
201
n
201
LYS
201
B
ILE
202
n
202
ILE
202
B
GLU
203
n
203
GLU
203
B
GLU
204
n
204
GLU
204
B
LEU
205
n
205
LEU
205
B
ARG
206
n
206
ARG
206
B
GLN
207
n
207
GLN
207
B
HIS
208
n
208
HIS
208
B
LEU
209
n
209
LEU
209
B
LEU
210
n
210
LEU
210
B
ARG
211
n
211
ARG
211
B
TRP
212
n
212
TRP
212
B
GLY
213
n
213
GLY
213
B
LEU
214
n
214
LEU
214
B
n
215
215
B
n
216
216
B
n
217
217
B
n
218
218
B
n
219
219
B
n
220
220
B
n
221
221
B
n
222
222
B
n
223
223
B
n
224
224
B
n
225
225
B
n
226
226
B
PHE
227
n
227
PHE
227
B
LEU
228
n
228
LEU
228
B
TRP
229
n
229
TRP
229
B
MET
230
n
230
MET
230
B
GLY
231
n
231
GLY
231
B
TYR
232
n
232
TYR
232
B
GLU
233
n
233
GLU
233
B
LEU
234
n
234
LEU
234
B
HIS
235
n
235
HIS
235
B
PRO
236
n
236
PRO
236
B
ASP
237
n
237
ASP
237
B
LYS
238
n
238
LYS
238
B
TRP
239
n
239
TRP
239
B
THR
240
n
240
THR
240
B
VAL
241
n
241
VAL
241
B
GLN
242
n
242
GLN
242
B
PRO
243
n
243
PRO
243
B
ILE
244
n
244
ILE
244
B
VAL
245
n
245
VAL
245
B
LEU
246
n
246
LEU
246
B
PRO
247
n
247
PRO
247
B
GLU
248
n
248
GLU
248
B
LYS
249
n
249
LYS
249
B
ASP
250
n
250
ASP
250
B
SER
251
n
251
SER
251
B
TRP
252
n
252
TRP
252
B
THR
253
n
253
THR
253
B
VAL
254
n
254
VAL
254
B
ASN
255
n
255
ASN
255
B
ASP
256
n
256
ASP
256
B
ILE
257
n
257
ILE
257
B
GLN
258
n
258
GLN
258
B
LYS
259
n
259
LYS
259
B
LEU
260
n
260
LEU
260
B
VAL
261
n
261
VAL
261
B
GLY
262
n
262
GLY
262
B
LYS
263
n
263
LYS
263
B
LEU
264
n
264
LEU
264
B
ASN
265
n
265
ASN
265
B
TRP
266
n
266
TRP
266
B
ALA
267
n
267
ALA
267
B
SER
268
n
268
SER
268
B
GLN
269
n
269
GLN
269
B
ILE
270
n
270
ILE
270
B
TYR
271
n
271
TYR
271
B
PRO
272
n
272
PRO
272
B
GLY
273
n
273
GLY
273
B
ILE
274
n
274
ILE
274
B
LYS
275
n
275
LYS
275
B
VAL
276
n
276
VAL
276
B
ARG
277
n
277
ARG
277
B
GLN
278
n
278
GLN
278
B
LEU
279
n
279
LEU
279
B
SER
280
n
280
SER
280
B
LYS
281
n
281
LYS
281
B
LEU
282
n
282
LEU
282
B
LEU
283
n
283
LEU
283
B
ARG
284
n
284
ARG
284
B
GLY
285
n
285
GLY
285
B
THR
286
n
286
THR
286
B
LYS
287
n
287
LYS
287
B
ALA
288
n
288
ALA
288
B
LEU
289
n
289
LEU
289
B
THR
290
n
290
THR
290
B
GLU
291
n
291
GLU
291
B
VAL
292
n
292
VAL
292
B
ILE
293
n
293
ILE
293
B
PRO
294
n
294
PRO
294
B
LEU
295
n
295
LEU
295
B
THR
296
n
296
THR
296
B
GLU
297
n
297
GLU
297
B
GLU
298
n
298
GLU
298
B
ALA
299
n
299
ALA
299
B
GLU
300
n
300
GLU
300
B
LEU
301
n
301
LEU
301
B
GLU
302
n
302
GLU
302
B
LEU
303
n
303
LEU
303
B
ALA
304
n
304
ALA
304
B
GLU
305
n
305
GLU
305
B
ASN
306
n
306
ASN
306
B
ARG
307
n
307
ARG
307
B
GLU
308
n
308
GLU
308
B
ILE
309
n
309
ILE
309
B
LEU
310
n
310
LEU
310
B
LYS
311
n
311
LYS
311
B
GLU
312
n
312
GLU
312
B
PRO
313
n
313
PRO
313
B
VAL
314
n
314
VAL
314
B
HIS
315
n
315
HIS
315
B
GLY
316
n
316
GLY
316
B
VAL
317
n
317
VAL
317
B
TYR
318
n
318
TYR
318
B
TYR
319
n
319
TYR
319
B
ASP
320
n
320
ASP
320
B
PRO
321
n
321
PRO
321
B
SER
322
n
322
SER
322
B
LYS
323
n
323
LYS
323
B
ASP
324
n
324
ASP
324
B
LEU
325
n
325
LEU
325
B
ILE
326
n
326
ILE
326
B
ALA
327
n
327
ALA
327
B
GLU
328
n
328
GLU
328
B
ILE
329
n
329
ILE
329
B
GLN
330
n
330
GLN
330
B
LYS
331
n
331
LYS
331
B
GLN
332
n
332
GLN
332
B
GLY
333
n
333
GLY
333
B
GLN
334
n
334
GLN
334
B
GLY
335
n
335
GLY
335
B
GLN
336
n
336
GLN
336
B
TRP
337
n
337
TRP
337
B
THR
338
n
338
THR
338
B
TYR
339
n
339
TYR
339
B
GLN
340
n
340
GLN
340
B
ILE
341
n
341
ILE
341
B
TYR
342
n
342
TYR
342
B
GLN
343
n
343
GLN
343
B
GLU
344
n
344
GLU
344
B
PRO
345
n
345
PRO
345
B
PHE
346
n
346
PHE
346
B
LYS
347
n
347
LYS
347
B
ASN
348
n
348
ASN
348
B
LEU
349
n
349
LEU
349
B
LYS
350
n
350
LYS
350
B
THR
351
n
351
THR
351
B
GLY
352
n
352
GLY
352
B
LYS
353
n
353
LYS
353
B
TYR
354
n
354
TYR
354
B
ALA
355
n
355
ALA
355
B
ARG
356
n
356
ARG
356
B
MET
357
n
357
MET
357
B
ARG
358
n
358
ARG
358
B
GLY
359
n
359
GLY
359
B
ALA
360
n
360
ALA
360
B
HIS
361
n
361
HIS
361
B
THR
362
n
362
THR
362
B
ASN
363
n
363
ASN
363
B
ASP
364
n
364
ASP
364
B
VAL
365
n
365
VAL
365
B
LYS
366
n
366
LYS
366
B
GLN
367
n
367
GLN
367
B
LEU
368
n
368
LEU
368
B
THR
369
n
369
THR
369
B
GLU
370
n
370
GLU
370
B
ALA
371
n
371
ALA
371
B
VAL
372
n
372
VAL
372
B
GLN
373
n
373
GLN
373
B
LYS
374
n
374
LYS
374
B
ILE
375
n
375
ILE
375
B
THR
376
n
376
THR
376
B
THR
377
n
377
THR
377
B
GLU
378
n
378
GLU
378
B
SER
379
n
379
SER
379
B
ILE
380
n
380
ILE
380
B
VAL
381
n
381
VAL
381
B
ILE
382
n
382
ILE
382
B
TRP
383
n
383
TRP
383
B
GLY
384
n
384
GLY
384
B
LYS
385
n
385
LYS
385
B
THR
386
n
386
THR
386
B
PRO
387
n
387
PRO
387
B
LYS
388
n
388
LYS
388
B
PHE
389
n
389
PHE
389
B
LYS
390
n
390
LYS
390
B
LEU
391
n
391
LEU
391
B
PRO
392
n
392
PRO
392
B
ILE
393
n
393
ILE
393
B
GLN
394
n
394
GLN
394
B
LYS
395
n
395
LYS
395
B
GLU
396
n
396
GLU
396
B
THR
397
n
397
THR
397
B
TRP
398
n
398
TRP
398
B
GLU
399
n
399
GLU
399
B
THR
400
n
400
THR
400
B
TRP
401
n
401
TRP
401
B
TRP
402
n
402
TRP
402
B
THR
403
n
403
THR
403
B
GLU
404
n
404
GLU
404
B
TYR
405
n
405
TYR
405
B
TRP
406
n
406
TRP
406
B
GLN
407
n
407
GLN
407
B
ALA
408
n
408
ALA
408
B
THR
409
n
409
THR
409
B
TRP
410
n
410
TRP
410
B
ILE
411
n
411
ILE
411
B
PRO
412
n
412
PRO
412
B
GLU
413
n
413
GLU
413
B
TRP
414
n
414
TRP
414
B
GLU
415
n
415
GLU
415
B
PHE
416
n
416
PHE
416
B
VAL
417
n
417
VAL
417
B
ASN
418
n
418
ASN
418
B
THR
419
n
419
THR
419
B
PRO
420
n
420
PRO
420
B
PRO
421
n
421
PRO
421
B
LEU
422
n
422
LEU
422
B
VAL
423
n
423
VAL
423
B
LYS
424
n
424
LYS
424
B
LEU
425
n
425
LEU
425
B
TRP
426
n
426
TRP
426
B
TYR
427
n
427
TYR
427
B
GLN
428
n
428
GLN
428
B
author_and_software_defined_assembly
PISA
2
dimeric
5090
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
SER
48
A
N
SER
50
A
O
GLN
145
A
O
GLN
147
A
O
ILE
142
A
O
ILE
144
A
N
ILE
132
A
N
ILE
134
A
N
ILE
63
A
N
ILE
65
A
O
ARG
72
A
O
ARG
74
A
N
SER
105
A
N
SER
107
A
O
SER
191
A
O
SER
193
A
O
TYR
188
A
O
TYR
190
A
N
TYR
181
A
N
TYR
183
A
N
TRP
229
A
N
TRP
231
A
O
TYR
232
A
O
TYR
234
A
N
GLU
233
A
N
GLU
235
A
O
THR
240
A
O
THR
242
A
O
GLY
352
A
O
GLY
354
A
N
TYR
339
A
N
TYR
341
A
O
TYR
342
A
O
TYR
344
A
N
ILE
326
A
N
ILE
328
A
N
ALA
327
A
N
ALA
329
A
O
LYS
388
A
O
LYS
390
A
N
LEU
391
A
N
LEU
393
A
O
GLU
415
A
O
GLU
417
A
O
VAL
467
A
O
VAL
469
A
N
ALA
455
A
N
ALA
457
A
O
LYS
454
A
O
LYS
456
A
N
ALA
445
A
N
ALA
447
A
N
PHE
440
A
N
PHE
442
A
O
ASN
494
A
O
ASN
496
A
N
THR
497
A
N
THR
499
A
O
ALA
534
A
O
ALA
536
B
N
SER
48
B
N
SER
48
B
O
GLN
145
B
O
GLN
145
B
O
TYR
144
B
O
TYR
144
B
N
PHE
130
B
N
PHE
130
B
N
ILE
63
B
N
ILE
63
B
O
ARG
72
B
O
ARG
72
B
N
TYR
181
B
N
TYR
181
B
O
TYR
188
B
O
TYR
188
B
O
VAL
189
B
O
VAL
189
B
N
THR
107
B
N
THR
107
B
N
VAL
106
B
N
VAL
106
B
O
LEU
234
B
O
LEU
234
B
N
TRP
252
B
N
TRP
252
B
O
ILE
293
B
O
ILE
293
B
O
LEU
349
B
O
LEU
349
B
N
ILE
341
B
N
ILE
341
B
O
TYR
342
B
O
TYR
342
B
N
ILE
326
B
N
ILE
326
B
N
ALA
327
B
N
ALA
327
B
O
LYS
390
B
O
LYS
390
B
N
PHE
389
B
N
PHE
389
B
O
GLU
413
B
O
GLU
413
1
A
MET
-1
A
MET
1
1
Y
1
A
VAL
0
A
VAL
2
1
Y
1
A
SER
553
A
SER
555
1
Y
1
A
ALA
554
A
ALA
556
1
Y
1
A
GLY
555
A
GLY
557
1
Y
1
B
THR
215
B
THR
215
1
Y
1
B
THR
216
B
THR
216
1
Y
1
B
PRO
217
B
PRO
217
1
Y
1
B
ASP
218
B
ASP
218
1
Y
1
B
LYS
219
B
LYS
219
1
Y
1
B
LYS
220
B
LYS
220
1
Y
1
B
HIS
221
B
HIS
221
1
Y
1
B
GLN
222
B
GLN
222
1
Y
1
B
LYS
223
B
LYS
223
1
Y
1
B
GLU
224
B
GLU
224
1
Y
1
B
PRO
225
B
PRO
225
1
Y
1
B
PRO
226
B
PRO
226
1
Y
1
12.67
1.50
119.30
131.97
A
A
A
C
N
CA
GLY
PRO
PRO
18
19
19
Y
1
11.78
1.50
119.30
131.08
A
A
A
C
N
CA
THR
PRO
PRO
216
217
217
Y
1
-17.30
2.70
111.00
93.70
A
A
A
N
CA
C
GLU
GLU
GLU
546
546
546
N
1
-17.38
2.70
111.00
93.62
B
B
B
N
CA
C
GLN
GLN
GLN
91
91
91
N
1
9.32
1.50
119.30
128.62
B
B
B
C
N
CA
HIS
PRO
PRO
235
236
236
Y
1
A
LEU
26
-96.05
-154.56
1
A
GLU
28
-29.24
-63.51
1
A
ILE
37
-48.74
-70.71
1
A
GLU
53
-71.20
-74.05
1
A
ASN
54
-35.12
101.62
1
A
PRO
55
-94.24
32.27
1
A
TYR
56
-110.62
76.25
1
A
PHE
61
-123.75
-161.49
1
A
LYS
65
-45.18
-82.73
1
A
LYS
66
-164.23
112.13
1
A
GLN
85
-51.86
-162.96
1
A
GLU
89
-68.21
99.58
1
A
VAL
90
-65.80
36.17
1
A
LEU
92
-68.21
11.45
1
A
PRO
95
-58.67
-177.70
1
A
ASP
123
-78.19
21.25
1
A
THR
128
-95.15
38.38
1
A
ASN
137
37.96
48.61
1
A
GLU
169
-20.26
-55.87
1
A
MET
184
67.94
-148.75
1
A
ASP
185
-64.51
2.14
1
A
ILE
195
-52.56
-5.81
1
A
HIS
198
-41.60
-74.09
1
A
PRO
217
-46.12
37.51
1
A
LYS
219
44.87
18.57
1
A
LYS
220
-80.34
46.57
1
A
HIS
221
-50.48
100.09
1
A
GLU
224
167.21
149.50
1
A
ASP
237
-151.87
4.23
1
A
PRO
243
-42.85
106.14
1
A
ASP
250
-145.12
-3.03
1
A
VAL
276
-144.23
19.49
1
A
ARG
284
-120.93
-67.29
1
A
LYS
287
-152.98
-55.59
1
A
ALA
288
-65.03
93.44
1
A
LEU
289
-56.53
1.97
1
A
GLU
291
-54.85
94.49
1
A
VAL
292
-66.87
99.27
1
A
THR
296
-48.81
155.67
1
A
PRO
321
-50.11
-3.16
1
A
GLN
334
71.82
48.07
1
A
PRO
345
-38.89
112.79
1
A
PHE
346
82.33
-9.69
1
A
ARG
358
-61.22
80.06
1
A
THR
362
169.47
150.95
1
A
PRO
412
-59.30
-179.68
1
A
PRO
420
-38.18
148.55
1
A
THR
459
-124.79
-168.96
1
A
LYS
465
176.24
135.59
1
A
ASN
471
50.29
73.10
1
A
ASN
474
-53.25
-2.39
1
A
ASP
488
-90.02
30.36
1
A
GLN
509
37.39
54.89
1
A
LYS
512
-171.68
142.65
1
A
HIS
539
43.80
26.88
1
A
GLU
546
-141.54
51.24
1
A
GLN
547
-111.51
69.30
1
B
SER
3
-171.94
138.87
1
B
PRO
9
-61.01
98.18
1
B
LYS
20
-104.85
69.54
1
B
GLU
28
-41.59
-71.67
1
B
GLU
29
-39.87
-36.58
1
B
LYS
66
-10.15
-58.08
1
B
THR
69
-107.44
48.63
1
B
PHE
77
-73.55
26.58
1
B
ASN
81
-36.32
-30.97
1
B
GLN
85
-64.52
43.38
1
B
PHE
87
173.93
168.18
1
B
TRP
88
-171.18
105.66
1
B
VAL
90
47.54
21.65
1
B
GLN
91
-153.60
4.79
1
B
ILE
94
161.50
128.68
1
B
PRO
97
-64.71
93.40
1
B
ALA
114
-39.81
-31.05
1
B
PHE
116
-71.80
29.46
1
B
ASN
136
71.89
-9.32
1
B
ASN
137
75.73
33.17
1
B
ILE
167
-57.85
-3.47
1
B
ASN
175
-114.59
74.14
1
B
MET
184
56.05
-135.78
1
B
THR
200
-47.45
-82.23
1
B
LYS
201
-44.15
-19.13
1
B
PRO
236
-51.59
-1.48
1
B
LYS
238
-84.36
35.22
1
B
PRO
272
-65.21
-72.54
1
B
ARG
284
-27.98
122.62
1
B
THR
286
-53.48
69.67
1
B
ALA
299
-50.15
-70.30
1
B
GLU
312
-68.20
-172.94
1
B
PRO
321
-31.69
-31.41
1
B
PHE
346
74.40
30.50
1
B
LYS
347
-140.40
56.75
1
B
LYS
350
-172.29
148.22
1
B
ALA
355
-100.29
-167.98
1
B
ALA
360
-69.28
67.55
1
B
THR
362
-70.06
21.58
1
B
GLN
407
-140.46
-13.22
1
B
LYS
424
-18.09
-56.85
protein_rep.param
protein.top
278.param
278.top
ion.param
ion.top
water_rep.param
water.top
75.3
-8.06
0.00
3.72
-4.77
0.00
12.83
0.299
0.008
0.241
0.241
2.90
40.0
1423
28135
5.1
98.7
RANDOM
2083026.92
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
2ZD1
Engh & Huber
FLAT MODEL
22.1544
0.271018
0.54
0.41
5.00
0.92
0.69
2.90
40.0
0
7958
28
0
7930
0.009
1.5
23.0
0.97
2.27
1.50
3.92
2.00
3.93
2.00
5.78
2.50
0.437
0.029
0.386
3.08
234
4272
6
5.2
95.5
2.9
40.0
2ZE2
28498
28140
-1.0
0.107
1
8.6
3.3
98.7
0.655
2.9
3.0
1.4
2666
1
2.7
94.6
refinement
CNS
1.1
data collection
HKL-2000
data reduction
HKL-2000
data scaling
SCALEPACK
phasing
CNS
Crystal structure of L100I/K103N mutant HIV-1 reverse transcriptase (RT) in complex with TMC278 (rilpivirine), a non-nucleoside RT inhibitor
1
N
N
2
N
N
3
N
N
P66/P51 HETERODIMER
A
THR
27
A
THR
29
HELX_P
A
GLY
45
A
GLY
47
1
1
19
A
PHE
77
A
PHE
79
HELX_P
A
LYS
82
A
LYS
84
1
2
6
A
HIS
96
A
HIS
98
HELX_P
A
ILE
100
A
ILE
102
5
3
5
A
ASP
113
A
ASP
115
HELX_P
A
VAL
118
A
VAL
120
5
4
6
A
ASP
121
A
ASP
123
HELX_P
A
TYR
127
A
TYR
129
5
5
7
A
SER
134
A
SER
136
HELX_P
A
GLU
138
A
GLU
140
5
6
5
A
GLY
155
A
GLY
157
HELX_P
A
ASN
175
A
ASN
177
1
7
21
A
GLU
194
A
GLU
196
HELX_P
A
LEU
209
A
LEU
211
1
8
16
A
LEU
210
A
LEU
212
HELX_P
A
GLY
213
A
GLY
215
5
9
4
A
LEU
260
A
LEU
262
HELX_P
A
SER
268
A
SER
270
1
10
9
A
THR
296
A
THR
298
HELX_P
A
LEU
310
A
LEU
312
1
11
15
A
ASN
363
A
ASN
365
HELX_P
A
GLY
384
A
GLY
386
1
12
22
A
GLN
394
A
GLN
396
HELX_P
A
TYR
405
A
TYR
407
1
13
12
A
GLN
475
A
GLN
477
HELX_P
A
ASP
488
A
ASP
490
1
14
14
A
SER
499
A
SER
501
HELX_P
A
ALA
508
A
ALA
510
1
15
10
A
SER
515
A
SER
517
HELX_P
A
LYS
528
A
LYS
530
1
16
14
B
THR
27
B
THR
27
HELX_P
B
MET
41
B
MET
41
1
17
15
B
PHE
77
B
PHE
77
HELX_P
B
GLN
85
B
GLN
85
1
18
9
B
GLY
99
B
GLY
99
HELX_P
B
LYS
103
B
LYS
103
5
19
5
B
GLY
112
B
GLY
112
HELX_P
B
VAL
118
B
VAL
118
5
20
7
B
PHE
124
B
PHE
124
HELX_P
B
THR
128
B
THR
128
5
21
5
B
SER
134
B
SER
134
HELX_P
B
GLU
138
B
GLU
138
5
22
5
B
GLY
155
B
GLY
155
HELX_P
B
LYS
173
B
LYS
173
1
23
19
B
GLU
194
B
GLU
194
HELX_P
B
TRP
212
B
TRP
212
1
24
19
B
VAL
254
B
VAL
254
HELX_P
B
SER
268
B
SER
268
1
25
15
B
VAL
276
B
VAL
276
HELX_P
B
LEU
282
B
LEU
282
1
26
7
B
THR
296
B
THR
296
HELX_P
B
GLU
312
B
GLU
312
1
27
17
B
ASN
363
B
ASN
363
HELX_P
B
GLY
384
B
GLY
384
1
28
22
B
GLN
394
B
GLN
394
HELX_P
B
TRP
402
B
TRP
402
1
29
9
B
THR
403
B
THR
403
HELX_P
B
TYR
405
B
TYR
405
5
30
3
B
PRO
421
B
PRO
421
HELX_P
B
TRP
426
B
TRP
426
5
31
6
TRANSFERASE, HYDROLASE
P51/P66, HETERO DIMER, NNRTI, NONNUCLEOSIDE INHIBITOR, AIDS, HIV, R278474, RILPIVIRINE, DIARYLPYRIMIDINE, DAPY, DNA RECOMBINATION, RNA-DIRECTED DNA POLYMERASE, DNA POLYMERASE, ENDONUCLEASE, HYDROLASE, MULTIFUNCTIONAL ENZYME, TRANSFERASE
A
PRO
225
A
PRO
227
1
A
PRO
226
A
PRO
228
-0.01
A
PRO
420
A
PRO
422
1
A
PRO
421
A
PRO
423
0.03
POL_HV1B1
UNP
1
600
P03366
PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFREL
NKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIF
QSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWT
VQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYD
PSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWET
WWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQ
AIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG
POL_HV1B1
UNP
2
600
P03366
PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFREL
NKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIF
QSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWT
VQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYD
PSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWET
WWTEYWQATWIPEWEFVNTPPLVKLWYQ
600
1154
2ZE2
1
555
P03366
A
1
3
557
600
1027
2ZE2
1
428
P03366
B
2
1
428
1
expression tag
MET
-1
2ZE2
A
P03366
UNP
1
1
expression tag
VAL
0
2ZE2
A
P03366
UNP
2
1
LEU
engineered mutation
ILE
100
2ZE2
A
P03366
UNP
699
102
1
LYS
engineered mutation
ASN
103
2ZE2
A
P03366
UNP
702
105
1
LYS
engineered mutation
ALA
172
2ZE2
A
P03366
UNP
771
174
1
LYS
engineered mutation
ALA
173
2ZE2
A
P03366
UNP
772
175
1
CYS
engineered mutation
SER
280
2ZE2
A
P03366
UNP
879
282
2
CYS
engineered mutation
SER
280
2ZE2
B
P03366
UNP
879
280
3
2
3
3
5
5
3
2
4
2
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
A
ILE
47
A
ILE
49
A
LYS
49
A
LYS
51
A
ILE
142
A
ILE
144
A
TYR
146
A
TYR
148
A
ALA
129
A
ALA
131
A
ILE
132
A
ILE
134
A
VAL
60
A
VAL
62
A
ILE
63
A
ILE
65
A
ARG
72
A
ARG
74
A
VAL
75
A
VAL
77
A
SER
105
A
SER
107
A
THR
107
A
THR
109
A
TYR
188
A
TYR
190
A
SER
191
A
SER
193
A
ILE
178
A
ILE
180
A
TYR
181
A
TYR
183
A
PHE
227
A
PHE
229
A
TRP
229
A
TRP
231
A
TYR
232
A
TYR
234
A
LEU
234
A
LEU
236
A
TRP
239
A
TRP
241
A
VAL
241
A
VAL
243
A
ASN
348
A
ASN
350
A
ALA
355
A
ALA
357
A
GLN
336
A
GLN
338
A
TYR
342
A
TYR
344
A
ILE
326
A
ILE
328
A
LYS
331
A
LYS
333
A
LYS
388
A
LYS
390
A
LEU
391
A
LEU
393
A
TRP
414
A
TRP
416
A
PHE
416
A
PHE
418
A
GLN
464
A
GLN
466
A
LEU
469
A
LEU
471
A
GLY
453
A
GLY
455
A
THR
459
A
THR
461
A
GLU
438
A
GLU
440
A
ALA
446
A
ALA
448
A
GLU
492
A
GLU
494
A
THR
497
A
THR
499
A
LYS
530
A
LYS
532
A
TRP
535
A
TRP
537
B
ILE
47
B
ILE
47
B
SER
48
B
SER
48
B
ILE
142
B
ILE
142
B
TYR
146
B
TYR
146
B
PHE
130
B
PHE
130
B
ILE
132
B
ILE
132
B
VAL
60
B
VAL
60
B
ILE
63
B
ILE
63
B
ARG
72
B
ARG
72
B
VAL
75
B
VAL
75
B
VAL
179
B
VAL
179
B
TYR
183
B
TYR
183
B
ASP
186
B
ASP
186
B
SER
191
B
SER
191
B
SER
105
B
SER
105
B
ASP
110
B
ASP
110
B
GLU
233
B
GLU
233
B
LEU
234
B
LEU
234
B
TRP
252
B
TRP
252
B
THR
253
B
THR
253
B
VAL
292
B
VAL
292
B
ILE
293
B
ILE
293
B
ASN
348
B
ASN
348
B
TYR
354
B
TYR
354
B
GLN
336
B
GLN
336
B
TYR
342
B
TYR
342
B
ILE
326
B
ILE
326
B
GLY
333
B
GLY
333
B
LYS
388
B
LYS
388
B
LEU
391
B
LEU
391
B
GLU
413
B
GLU
413
B
PHE
416
B
PHE
416
BINDING SITE FOR RESIDUE T27 A 556
A
T27
556
Software
9
A
ILE
100
A
ILE
102
9
1_555
A
LYS
101
A
LYS
103
9
1_555
A
ASN
103
A
ASN
105
9
1_555
A
TYR
181
A
TYR
183
9
1_555
A
TYR
188
A
TYR
190
9
1_555
A
PHE
227
A
PHE
229
9
1_555
A
TRP
229
A
TRP
231
9
1_555
A
LEU
234
A
LEU
236
9
1_555
A
HIS
235
A
HIS
237
9
1_555
5
C 1 2 1