0.025331
0.000000
0.000000
0.000000
0.019935
0.000000
0.000000
0.000000
0.006367
0.00000
0.00000
0.00000
Nitta, R.
Okada, Y.
Hirokawa, N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
39.477
50.162
157.060
C10 H15 N5 O10 P2
427.201
n
ADENOSINE-5'-DIPHOSPHATE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C4 H12 N O3 1
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER
non-polymer
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
S
P
N
6
N
O
N
7
N
O
N
8
N
O
N
9
N
O
N
10
N
C
N
11
R
C
N
12
N
O
N
13
S
C
N
14
N
O
N
15
R
C
N
16
N
O
N
17
R
C
Y
18
N
N
Y
19
N
C
Y
20
N
N
Y
21
N
C
Y
22
N
C
N
23
N
N
Y
24
N
N
Y
25
N
C
Y
26
N
N
Y
27
N
C
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
N
N
44
S
C
N
45
N
C
N
46
N
O
N
47
N
C
N
48
N
O
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
N
N
57
S
C
N
58
N
C
N
59
N
O
N
60
N
C
N
61
N
C
N
62
N
C
N
63
N
N
N
64
N
C
N
65
N
N
N
66
N
N
N
67
N
O
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
N
N
84
S
C
N
85
N
C
N
86
N
O
N
87
N
C
N
88
N
C
N
89
N
O
N
90
N
N
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
N
N
101
S
C
N
102
N
C
N
103
N
O
N
104
N
C
N
105
N
C
N
106
N
O
N
107
N
O
N
108
N
O
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
N
N
117
R
C
N
118
N
C
N
119
N
O
N
120
N
C
N
121
N
S
N
122
N
O
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
N
N
131
S
C
N
132
N
C
N
133
N
O
N
134
N
C
N
135
N
C
N
136
N
C
N
137
N
O
N
138
N
N
N
139
N
O
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
N
N
151
S
C
N
152
N
C
N
153
N
O
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
O
N
158
N
O
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
N
C
N
171
N
C
N
172
N
O
N
173
N
O
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
N
N
180
S
C
N
181
N
C
N
182
N
O
N
183
N
C
Y
184
N
C
Y
185
N
N
Y
186
N
C
Y
187
N
C
Y
188
N
N
N
189
N
O
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
N
N
204
S
C
N
205
N
C
N
206
N
O
N
207
S
C
N
208
N
C
N
209
N
C
N
210
N
C
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
N
N
226
S
C
N
227
N
C
N
228
N
O
N
229
N
C
N
230
N
C
N
231
N
C
N
232
N
C
N
233
N
O
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
N
252
N
C
N
253
N
C
N
254
N
C
N
255
N
N
N
256
N
O
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
N
N
273
S
C
N
274
N
C
N
275
N
O
N
276
N
C
N
277
N
C
N
278
N
S
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
MG
N
293
N
N
N
294
S
C
N
295
N
C
N
296
N
O
N
297
N
C
Y
298
N
C
Y
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
N
304
N
O
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
N
N
317
S
C
N
318
N
C
N
319
N
O
N
320
N
C
N
321
N
C
N
322
N
C
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
N
C
N
338
N
O
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
R
C
N
352
N
O
N
353
N
C
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
N
N
365
S
C
N
366
N
C
N
367
N
O
N
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
N
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
C
N
392
N
C
N
393
N
C
N
394
N
C
N
395
N
N
N
396
N
O
N
397
N
O
N
398
N
O
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
N
N
412
S
C
N
413
N
C
N
414
N
O
N
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
C
Y
420
N
C
Y
421
N
C
N
422
N
O
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
N
N
436
S
C
N
437
N
C
N
438
N
O
N
439
N
C
N
440
N
C
N
441
N
C
N
442
N
O
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
Y
30
N
sing
Y
31
N
sing
Y
32
N
doub
N
33
N
sing
Y
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
doub
N
39
N
sing
N
40
N
sing
Y
41
N
sing
Y
42
N
doub
N
43
N
sing
Y
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
doub
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
Y
184
N
sing
Y
185
N
doub
Y
186
N
doub
N
187
N
sing
Y
188
N
sing
N
189
N
sing
Y
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
Y
292
N
doub
Y
293
N
sing
Y
294
N
sing
N
295
N
sing
Y
296
N
doub
N
297
N
sing
Y
298
N
doub
N
299
N
sing
Y
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
doub
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
Y
361
N
doub
Y
362
N
sing
Y
363
N
sing
N
364
N
sing
Y
365
N
doub
Y
366
N
sing
Y
367
N
sing
N
368
N
sing
Y
369
N
sing
Y
370
N
doub
N
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
doub
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
Y
408
N
doub
Y
409
N
sing
Y
410
N
sing
N
411
N
sing
Y
412
N
doub
N
413
N
sing
Y
414
N
doub
N
415
N
sing
Y
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
doub
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
US
Nat.Struct.Mol.Biol.
1545-9993
15
1067
1075
10.1038/nsmb.1487
18806800
Structural model for strain-dependent microtubule activation of Mg-ADP release from kinesin.
2008
10.2210/pdb2zfk/pdb
pdb_00002zfk
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
CCD
2005-03-01
ADSC QUANTUM 210
SINGLE WAVELENGTH
M
x-ray
1
0.97
1.0
AR-NW12A
Photon Factory
0.97
SYNCHROTRON
PHOTON FACTORY BEAMLINE AR-NW12A
FUSION PROTEIN COMPRISES RESIDUES 1-355 OF Kinesin-like protein KIF1A, AND RESIDUES 329-334 OF Kinesin heavy chain isoform 5C, AND C-TERMINAL TAIL WITH SEQUENCE HHHHH
41128.215
Kinesin-like protein KIF1A, Kinesin heavy chain isoform 5C
KIF1A (residues 1-355), KIF5C (residues 329-334)
1
man
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
427.201
ADENOSINE-5'-DIPHOSPHATE
1
syn
non-polymer
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2
syn
non-polymer
18.015
water
27
nat
water
Axonal transporter of synaptic vesi cles, Kinesin heavy chain neuron-specifiC 2
no
no
MAGASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEE
MLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNP
KNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEK
VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLG
GNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNHHHHH
MAGASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEE
MLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNP
KNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEK
VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLG
GNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Mouse
sample
1
355
10090
Mus musculus
562
Escherichia coli
PLASMID
PET21B
Mouse
sample
356
361
10090
Mus musculus
562
Escherichia coli
PLASMID
PET21B
1.89
35.00
VAPOR DIFFUSION, HANGING DROP
8.5
pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
293.0
entity_src_gen
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Source and taxonomy
Data collection
Database references
Derived calculations
Refinement description
1
0
2008-09-23
1
1
2011-07-13
1
2
2017-08-23
1
3
2023-11-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
PDBJ
Y
PDBJ
2008-01-08
REL
REL
MG
MAGNESIUM ION
ADP
ADENOSINE-5'-DIPHOSPHATE
TRS
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
HOH
water
1VFV
PDB
experimental model
MG
2001
2
MG
MG
2001
A
ADP
2000
3
ADP
ADP
2000
A
TRS
2002
4
TRS
TRS
2002
A
TRS
2003
4
TRS
TRS
2003
A
HOH
1
5
HOH
HOH
2004
A
HOH
2
5
HOH
HOH
2005
A
HOH
3
5
HOH
HOH
2006
A
HOH
4
5
HOH
HOH
2007
A
HOH
5
5
HOH
HOH
2008
A
HOH
6
5
HOH
HOH
2009
A
HOH
7
5
HOH
HOH
2010
A
HOH
8
5
HOH
HOH
2011
A
HOH
9
5
HOH
HOH
2012
A
HOH
10
5
HOH
HOH
2013
A
HOH
11
5
HOH
HOH
2014
A
HOH
12
5
HOH
HOH
2015
A
HOH
13
5
HOH
HOH
2016
A
HOH
14
5
HOH
HOH
2017
A
HOH
15
5
HOH
HOH
2018
A
HOH
16
5
HOH
HOH
2019
A
HOH
17
5
HOH
HOH
2020
A
HOH
18
5
HOH
HOH
2021
A
HOH
19
5
HOH
HOH
2022
A
HOH
20
5
HOH
HOH
2023
A
HOH
21
5
HOH
HOH
2024
A
HOH
22
5
HOH
HOH
2025
A
HOH
23
5
HOH
HOH
2026
A
HOH
24
5
HOH
HOH
2027
A
HOH
25
5
HOH
HOH
2028
A
HOH
26
5
HOH
HOH
2029
A
HOH
27
5
HOH
HOH
2030
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
VAL
6
n
6
VAL
6
A
LYS
7
n
7
LYS
7
A
VAL
8
n
8
VAL
8
A
ALA
9
n
9
ALA
9
A
VAL
10
n
10
VAL
10
A
ARG
11
n
11
ARG
11
A
VAL
12
n
12
VAL
12
A
ARG
13
n
13
ARG
13
A
PRO
14
n
14
PRO
14
A
PHE
15
n
15
PHE
15
A
ASN
16
n
16
ASN
16
A
SER
17
n
17
SER
17
A
ARG
18
n
18
ARG
18
A
GLU
19
n
19
GLU
19
A
MET
20
n
20
MET
20
A
SER
21
n
21
SER
21
A
ARG
22
n
22
ARG
22
A
ASP
23
n
23
ASP
23
A
SER
24
n
24
SER
24
A
LYS
25
n
25
LYS
25
A
CYS
26
n
26
CYS
26
A
ILE
27
n
27
ILE
27
A
ILE
28
n
28
ILE
28
A
GLN
29
n
29
GLN
29
A
n
30
30
A
n
31
31
A
GLY
32
n
32
GLY
32
A
SER
33
n
33
SER
33
A
THR
34
n
34
THR
34
A
THR
35
n
35
THR
35
A
THR
36
n
36
THR
36
A
ILE
37
n
37
ILE
37
A
VAL
38
n
38
VAL
38
A
ASN
39
n
39
ASN
39
A
PRO
40
n
40
PRO
40
A
LYS
41
n
41
LYS
41
A
GLN
42
n
42
GLN
42
A
PRO
43
n
43
PRO
43
A
LYS
44
n
44
LYS
44
A
GLU
45
n
45
GLU
45
A
THR
46
n
46
THR
46
A
PRO
47
n
47
PRO
47
A
LYS
48
n
48
LYS
48
A
SER
49
n
49
SER
49
A
PHE
50
n
50
PHE
50
A
SER
51
n
51
SER
51
A
PHE
52
n
52
PHE
52
A
ASP
53
n
53
ASP
53
A
TYR
54
n
54
TYR
54
A
SER
55
n
55
SER
55
A
TYR
56
n
56
TYR
56
A
TRP
57
n
57
TRP
57
A
SER
58
n
58
SER
58
A
HIS
59
n
59
HIS
59
A
THR
60
n
60
THR
60
A
SER
61
n
61
SER
61
A
PRO
62
n
62
PRO
62
A
GLU
63
n
63
GLU
63
A
ASP
64
n
64
ASP
64
A
ILE
65
n
65
ILE
65
A
ASN
66
n
66
ASN
66
A
TYR
67
n
67
TYR
67
A
ALA
68
n
68
ALA
68
A
SER
69
n
69
SER
69
A
GLN
70
n
70
GLN
70
A
LYS
71
n
71
LYS
71
A
GLN
72
n
72
GLN
72
A
VAL
73
n
73
VAL
73
A
TYR
74
n
74
TYR
74
A
ARG
75
n
75
ARG
75
A
ASP
76
n
76
ASP
76
A
ILE
77
n
77
ILE
77
A
GLY
78
n
78
GLY
78
A
GLU
79
n
79
GLU
79
A
GLU
80
n
80
GLU
80
A
MET
81
n
81
MET
81
A
LEU
82
n
82
LEU
82
A
GLN
83
n
83
GLN
83
A
HIS
84
n
84
HIS
84
A
ALA
85
n
85
ALA
85
A
PHE
86
n
86
PHE
86
A
GLU
87
n
87
GLU
87
A
GLY
88
n
88
GLY
88
A
TYR
89
n
89
TYR
89
A
ASN
90
n
90
ASN
90
A
VAL
91
n
91
VAL
91
A
CYS
92
n
92
CYS
92
A
ILE
93
n
93
ILE
93
A
PHE
94
n
94
PHE
94
A
ALA
95
n
95
ALA
95
A
TYR
96
n
96
TYR
96
A
GLY
97
n
97
GLY
97
A
GLN
98
n
98
GLN
98
A
THR
99
n
99
THR
99
A
GLY
100
n
100
GLY
100
A
ALA
101
n
101
ALA
101
A
GLY
102
n
102
GLY
102
A
LYS
103
n
103
LYS
103
A
SER
104
n
104
SER
104
A
TYR
105
n
105
TYR
105
A
THR
106
n
106
THR
106
A
MET
107
n
107
MET
107
A
MET
108
n
108
MET
108
A
GLY
109
n
109
GLY
109
A
LYS
110
n
110
LYS
110
A
GLN
111
n
111
GLN
111
A
GLU
112
n
112
GLU
112
A
LYS
113
n
113
LYS
113
A
ASP
114
n
114
ASP
114
A
GLN
115
n
115
GLN
115
A
GLN
116
n
116
GLN
116
A
GLY
117
n
117
GLY
117
A
ILE
118
n
118
ILE
118
A
ILE
119
n
119
ILE
119
A
PRO
120
n
120
PRO
120
A
GLN
121
n
121
GLN
121
A
LEU
122
n
122
LEU
122
A
CYS
123
n
123
CYS
123
A
GLU
124
n
124
GLU
124
A
ASP
125
n
125
ASP
125
A
LEU
126
n
126
LEU
126
A
PHE
127
n
127
PHE
127
A
SER
128
n
128
SER
128
A
ARG
129
n
129
ARG
129
A
ILE
130
n
130
ILE
130
A
ASN
131
n
131
ASN
131
A
ASP
132
n
132
ASP
132
A
THR
133
n
133
THR
133
A
THR
134
n
134
THR
134
A
ASN
135
n
135
ASN
135
A
ASP
136
n
136
ASP
136
A
ASN
137
n
137
ASN
137
A
MET
138
n
138
MET
138
A
SER
139
n
139
SER
139
A
TYR
140
n
140
TYR
140
A
SER
141
n
141
SER
141
A
VAL
142
n
142
VAL
142
A
GLU
143
n
143
GLU
143
A
VAL
144
n
144
VAL
144
A
SER
145
n
145
SER
145
A
TYR
146
n
146
TYR
146
A
MET
147
n
147
MET
147
A
GLU
148
n
148
GLU
148
A
ILE
149
n
149
ILE
149
A
TYR
150
n
150
TYR
150
A
CYS
151
n
151
CYS
151
A
GLU
152
n
152
GLU
152
A
ARG
153
n
153
ARG
153
A
VAL
154
n
154
VAL
154
A
ARG
155
n
155
ARG
155
A
ASP
156
n
156
ASP
156
A
LEU
157
n
157
LEU
157
A
LEU
158
n
158
LEU
158
A
ASN
159
n
159
ASN
159
A
PRO
160
n
160
PRO
160
A
LYS
161
n
161
LYS
161
A
ASN
162
n
162
ASN
162
A
LYS
163
n
163
LYS
163
A
GLY
164
n
164
GLY
164
A
ASN
165
n
165
ASN
165
A
LEU
166
n
166
LEU
166
A
ARG
167
n
167
ARG
167
A
VAL
168
n
168
VAL
168
A
ARG
169
n
169
ARG
169
A
GLU
170
n
170
GLU
170
A
HIS
171
n
171
HIS
171
A
PRO
172
n
172
PRO
172
A
LEU
173
n
173
LEU
173
A
LEU
174
n
174
LEU
174
A
GLY
175
n
175
GLY
175
A
PRO
176
n
176
PRO
176
A
TYR
177
n
177
TYR
177
A
VAL
178
n
178
VAL
178
A
GLU
179
n
179
GLU
179
A
ASP
180
n
180
ASP
180
A
LEU
181
n
181
LEU
181
A
SER
182
n
182
SER
182
A
LYS
183
n
183
LYS
183
A
LEU
184
n
184
LEU
184
A
ALA
185
n
185
ALA
185
A
VAL
186
n
186
VAL
186
A
THR
187
n
187
THR
187
A
SER
188
n
188
SER
188
A
TYR
189
n
189
TYR
189
A
ASN
190
n
190
ASN
190
A
ASP
191
n
191
ASP
191
A
ILE
192
n
192
ILE
192
A
GLN
193
n
193
GLN
193
A
ASP
194
n
194
ASP
194
A
LEU
195
n
195
LEU
195
A
MET
196
n
196
MET
196
A
ASP
197
n
197
ASP
197
A
SER
198
n
198
SER
198
A
GLY
199
n
199
GLY
199
A
ASN
200
n
200
ASN
200
A
LYS
201
n
201
LYS
201
A
PRO
202
n
202
PRO
202
A
ARG
203
n
203
ARG
203
A
THR
204
n
204
THR
204
A
VAL
205
n
205
VAL
205
A
n
206
206
A
n
207
207
A
n
208
208
A
n
209
209
A
n
210
210
A
ASN
211
n
211
ASN
211
A
GLU
212
n
212
GLU
212
A
THR
213
n
213
THR
213
A
SER
214
n
214
SER
214
A
SER
215
n
215
SER
215
A
ARG
216
n
216
ARG
216
A
SER
217
n
217
SER
217
A
HIS
218
n
218
HIS
218
A
ALA
219
n
219
ALA
219
A
VAL
220
n
220
VAL
220
A
PHE
221
n
221
PHE
221
A
ASN
222
n
222
ASN
222
A
ILE
223
n
223
ILE
223
A
ILE
224
n
224
ILE
224
A
PHE
225
n
225
PHE
225
A
THR
226
n
226
THR
226
A
GLN
227
n
227
GLN
227
A
LYS
228
n
228
LYS
228
A
ARG
229
n
229
ARG
229
A
HIS
230
n
230
HIS
230
A
ASP
231
n
231
ASP
231
A
ALA
232
n
232
ALA
232
A
GLU
233
n
233
GLU
233
A
THR
234
n
234
THR
234
A
ASN
235
n
235
ASN
235
A
ILE
236
n
236
ILE
236
A
THR
237
n
237
THR
237
A
THR
238
n
238
THR
238
A
GLU
239
n
239
GLU
239
A
LYS
240
n
240
LYS
240
A
VAL
241
n
241
VAL
241
A
SER
242
n
242
SER
242
A
LYS
243
n
243
LYS
243
A
ILE
244
n
244
ILE
244
A
SER
245
n
245
SER
245
A
LEU
246
n
246
LEU
246
A
VAL
247
n
247
VAL
247
A
ASP
248
n
248
ASP
248
A
LEU
249
n
249
LEU
249
A
ALA
250
n
250
ALA
250
A
GLY
251
n
251
GLY
251
A
SER
252
n
252
SER
252
A
GLU
253
n
253
GLU
253
A
n
254
254
A
n
255
255
A
n
256
256
A
n
257
257
A
n
258
258
A
n
259
259
A
n
260
260
A
n
261
261
A
n
262
262
A
n
263
263
A
n
264
264
A
n
265
265
A
n
266
266
A
GLU
267
n
267
GLU
267
A
GLY
268
n
268
GLY
268
A
ALA
269
n
269
ALA
269
A
ASN
270
n
270
ASN
270
A
ILE
271
n
271
ILE
271
A
ASN
272
n
272
ASN
272
A
LYS
273
n
273
LYS
273
A
SER
274
n
274
SER
274
A
LEU
275
n
275
LEU
275
A
THR
276
n
276
THR
276
A
THR
277
n
277
THR
277
A
LEU
278
n
278
LEU
278
A
GLY
279
n
279
GLY
279
A
LYS
280
n
280
LYS
280
A
VAL
281
n
281
VAL
281
A
ILE
282
n
282
ILE
282
A
SER
283
n
283
SER
283
A
ALA
284
n
284
ALA
284
A
LEU
285
n
285
LEU
285
A
ALA
286
n
286
ALA
286
A
GLU
287
n
287
GLU
287
A
MET
288
n
288
MET
288
A
ASP
289
n
289
ASP
289
A
SER
290
n
290
SER
290
A
GLY
291
n
291
GLY
291
A
PRO
292
n
292
PRO
292
A
n
293
293
A
n
294
294
A
n
295
295
A
n
296
296
A
n
297
297
A
n
298
298
A
n
299
299
A
n
300
300
A
n
301
301
A
ASP
302
n
302
ASP
302
A
PHE
303
n
303
PHE
303
A
ILE
304
n
304
ILE
304
A
PRO
305
n
305
PRO
305
A
TYR
306
n
306
TYR
306
A
ARG
307
n
307
ARG
307
A
ASP
308
n
308
ASP
308
A
SER
309
n
309
SER
309
A
VAL
310
n
310
VAL
310
A
LEU
311
n
311
LEU
311
A
THR
312
n
312
THR
312
A
TRP
313
n
313
TRP
313
A
LEU
314
n
314
LEU
314
A
LEU
315
n
315
LEU
315
A
ARG
316
n
316
ARG
316
A
GLU
317
n
317
GLU
317
A
ASN
318
n
318
ASN
318
A
LEU
319
n
319
LEU
319
A
GLY
320
n
320
GLY
320
A
GLY
321
n
321
GLY
321
A
ASN
322
n
322
ASN
322
A
SER
323
n
323
SER
323
A
ARG
324
n
324
ARG
324
A
THR
325
n
325
THR
325
A
ALA
326
n
326
ALA
326
A
MET
327
n
327
MET
327
A
VAL
328
n
328
VAL
328
A
ALA
329
n
329
ALA
329
A
ALA
330
n
330
ALA
330
A
LEU
331
n
331
LEU
331
A
SER
332
n
332
SER
332
A
PRO
333
n
333
PRO
333
A
ALA
334
n
334
ALA
334
A
ASP
335
n
335
ASP
335
A
ILE
336
n
336
ILE
336
A
ASN
337
n
337
ASN
337
A
TYR
338
n
338
TYR
338
A
ASP
339
n
339
ASP
339
A
GLU
340
n
340
GLU
340
A
THR
341
n
341
THR
341
A
LEU
342
n
342
LEU
342
A
SER
343
n
343
SER
343
A
THR
344
n
344
THR
344
A
LEU
345
n
345
LEU
345
A
ARG
346
n
346
ARG
346
A
TYR
347
n
347
TYR
347
A
ALA
348
n
348
ALA
348
A
ASP
349
n
349
ASP
349
A
ARG
350
n
350
ARG
350
A
ALA
351
n
351
ALA
351
A
LYS
352
n
352
LYS
352
A
GLN
353
n
353
GLN
353
A
ILE
354
n
354
ILE
354
A
ARG
355
n
355
ARG
355
A
n
356
356
A
n
357
357
A
n
358
358
A
n
359
359
A
n
360
360
A
n
361
361
A
n
362
362
A
n
363
363
A
n
364
364
A
n
365
365
A
n
366
366
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
TYR
54
A
O
TYR
54
A
N
VAL
10
A
N
VAL
10
A
N
ARG
11
A
N
ARG
11
A
O
ALA
329
A
O
ALA
329
A
O
VAL
328
A
O
VAL
328
A
N
TYR
96
A
N
TYR
96
A
N
ALA
95
A
N
ALA
95
A
O
VAL
247
A
O
VAL
247
A
O
LYS
240
A
O
LYS
240
A
N
GLN
227
A
N
GLN
227
A
O
ILE
224
A
O
ILE
224
A
N
GLU
143
A
N
GLU
143
A
N
ARG
169
A
N
ARG
169
A
O
TYR
177
A
O
TYR
177
1
A
CG
GLN
29
A
CG
GLN
29
1
Y
1
A
CD
GLN
29
A
CD
GLN
29
1
Y
1
A
OE1
GLN
29
A
OE1
GLN
29
1
Y
1
A
NE2
GLN
29
A
NE2
GLN
29
1
Y
1
A
CG
ASN
39
A
CG
ASN
39
1
Y
1
A
OD1
ASN
39
A
OD1
ASN
39
1
Y
1
A
ND2
ASN
39
A
ND2
ASN
39
1
Y
1
A
CG
GLN
42
A
CG
GLN
42
1
Y
1
A
CD
GLN
42
A
CD
GLN
42
1
Y
1
A
OE1
GLN
42
A
OE1
GLN
42
1
Y
1
A
NE2
GLN
42
A
NE2
GLN
42
1
Y
1
A
CG
PRO
43
A
CG
PRO
43
1
Y
1
A
CD
PRO
43
A
CD
PRO
43
1
Y
1
A
CG
LYS
44
A
CG
LYS
44
1
Y
1
A
CD
LYS
44
A
CD
LYS
44
1
Y
1
A
CE
LYS
44
A
CE
LYS
44
1
Y
1
A
NZ
LYS
44
A
NZ
LYS
44
1
Y
1
A
CG
GLU
45
A
CG
GLU
45
1
Y
1
A
CD
GLU
45
A
CD
GLU
45
1
Y
1
A
OE1
GLU
45
A
OE1
GLU
45
1
Y
1
A
OE2
GLU
45
A
OE2
GLU
45
1
Y
1
A
CG
ARG
75
A
CG
ARG
75
1
Y
1
A
CD
ARG
75
A
CD
ARG
75
1
Y
1
A
NE
ARG
75
A
NE
ARG
75
1
Y
1
A
CZ
ARG
75
A
CZ
ARG
75
1
Y
1
A
NH1
ARG
75
A
NH1
ARG
75
1
Y
1
A
NH2
ARG
75
A
NH2
ARG
75
1
Y
1
A
CG
LYS
103
A
CG
LYS
103
1
Y
1
A
CD
LYS
103
A
CD
LYS
103
1
Y
1
A
CE
LYS
103
A
CE
LYS
103
1
Y
1
A
NZ
LYS
103
A
NZ
LYS
103
1
Y
1
A
CG
ASP
125
A
CG
ASP
125
1
Y
1
A
OD1
ASP
125
A
OD1
ASP
125
1
Y
1
A
OD2
ASP
125
A
OD2
ASP
125
1
Y
1
A
CG
ARG
129
A
CG
ARG
129
1
Y
1
A
CD
ARG
129
A
CD
ARG
129
1
Y
1
A
NE
ARG
129
A
NE
ARG
129
1
Y
1
A
CZ
ARG
129
A
CZ
ARG
129
1
Y
1
A
NH1
ARG
129
A
NH1
ARG
129
1
Y
1
A
NH2
ARG
129
A
NH2
ARG
129
1
Y
1
A
CG
MET
138
A
CG
MET
138
1
Y
1
A
SD
MET
138
A
SD
MET
138
1
Y
1
A
CE
MET
138
A
CE
MET
138
1
Y
1
A
CG
ASN
165
A
CG
ASN
165
1
Y
1
A
OD1
ASN
165
A
OD1
ASN
165
1
Y
1
A
ND2
ASN
165
A
ND2
ASN
165
1
Y
1
A
CG
LEU
166
A
CG
LEU
166
1
Y
1
A
CD1
LEU
166
A
CD1
LEU
166
1
Y
1
A
CD2
LEU
166
A
CD2
LEU
166
1
Y
1
A
OG
SER
182
A
OG
SER
182
1
Y
1
A
CG
ASP
194
A
CG
ASP
194
1
Y
1
A
OD1
ASP
194
A
OD1
ASP
194
1
Y
1
A
OD2
ASP
194
A
OD2
ASP
194
1
Y
1
A
CG
PRO
202
A
CG
PRO
202
1
Y
1
A
CD
PRO
202
A
CD
PRO
202
1
Y
1
A
CG
HIS
218
A
CG
HIS
218
1
Y
1
A
ND1
HIS
218
A
ND1
HIS
218
1
Y
1
A
CD2
HIS
218
A
CD2
HIS
218
1
Y
1
A
CE1
HIS
218
A
CE1
HIS
218
1
Y
1
A
NE2
HIS
218
A
NE2
HIS
218
1
Y
1
A
CG
ARG
229
A
CG
ARG
229
1
Y
1
A
CD
ARG
229
A
CD
ARG
229
1
Y
1
A
NE
ARG
229
A
NE
ARG
229
1
Y
1
A
CZ
ARG
229
A
CZ
ARG
229
1
Y
1
A
NH1
ARG
229
A
NH1
ARG
229
1
Y
1
A
NH2
ARG
229
A
NH2
ARG
229
1
Y
1
A
CG
ASP
231
A
CG
ASP
231
1
Y
1
A
OD1
ASP
231
A
OD1
ASP
231
1
Y
1
A
OD2
ASP
231
A
OD2
ASP
231
1
Y
1
A
CG
GLU
233
A
CG
GLU
233
1
Y
1
A
CD
GLU
233
A
CD
GLU
233
1
Y
1
A
OE1
GLU
233
A
OE1
GLU
233
1
Y
1
A
OE2
GLU
233
A
OE2
GLU
233
1
Y
1
A
CG
LYS
273
A
CG
LYS
273
1
Y
1
A
CD
LYS
273
A
CD
LYS
273
1
Y
1
A
CE
LYS
273
A
CE
LYS
273
1
Y
1
A
NZ
LYS
273
A
NZ
LYS
273
1
Y
1
A
CG
ASP
302
A
CG
ASP
302
1
Y
1
A
OD1
ASP
302
A
OD1
ASP
302
1
Y
1
A
OD2
ASP
302
A
OD2
ASP
302
1
Y
1
A
CG
LEU
314
A
CG
LEU
314
1
Y
1
A
CD1
LEU
314
A
CD1
LEU
314
1
Y
1
A
CD2
LEU
314
A
CD2
LEU
314
1
Y
1
A
OG
SER
323
A
OG
SER
323
1
Y
1
A
CG
ARG
324
A
CG
ARG
324
1
Y
1
A
CD
ARG
324
A
CD
ARG
324
1
Y
1
A
NE
ARG
324
A
NE
ARG
324
1
Y
1
A
CZ
ARG
324
A
CZ
ARG
324
1
Y
1
A
NH1
ARG
324
A
NH1
ARG
324
1
Y
1
A
NH2
ARG
324
A
NH2
ARG
324
1
Y
1
A
CG
TYR
338
A
CG
TYR
338
1
Y
1
A
CD1
TYR
338
A
CD1
TYR
338
1
Y
1
A
CD2
TYR
338
A
CD2
TYR
338
1
Y
1
A
CE1
TYR
338
A
CE1
TYR
338
1
Y
1
A
CE2
TYR
338
A
CE2
TYR
338
1
Y
1
A
CZ
TYR
338
A
CZ
TYR
338
1
Y
1
A
OH
TYR
338
A
OH
TYR
338
1
Y
1
A
CG
ARG
350
A
CG
ARG
350
1
Y
1
A
CD
ARG
350
A
CD
ARG
350
1
Y
1
A
NE
ARG
350
A
NE
ARG
350
1
Y
1
A
CZ
ARG
350
A
CZ
ARG
350
1
Y
1
A
NH1
ARG
350
A
NH1
ARG
350
1
Y
1
A
NH2
ARG
350
A
NH2
ARG
350
1
Y
1
A
CG
GLN
353
A
CG
GLN
353
1
Y
1
A
CD
GLN
353
A
CD
GLN
353
1
Y
1
A
OE1
GLN
353
A
OE1
GLN
353
1
Y
1
A
NE2
GLN
353
A
NE2
GLN
353
1
Y
1
A
MET
1
A
MET
1
1
Y
1
A
ALA
2
A
ALA
2
1
Y
1
A
GLY
3
A
GLY
3
1
Y
1
A
ALA
4
A
ALA
4
1
Y
1
A
SER
5
A
SER
5
1
Y
1
A
MET
30
A
MET
30
1
Y
1
A
SER
31
A
SER
31
1
Y
1
A
ALA
206
A
ALA
206
1
Y
1
A
ALA
207
A
ALA
207
1
Y
1
A
THR
208
A
THR
208
1
Y
1
A
ASN
209
A
ASN
209
1
Y
1
A
MET
210
A
MET
210
1
Y
1
A
ARG
254
A
ARG
254
1
Y
1
A
ALA
255
A
ALA
255
1
Y
1
A
ASP
256
A
ASP
256
1
Y
1
A
SER
257
A
SER
257
1
Y
1
A
THR
258
A
THR
258
1
Y
1
A
GLY
259
A
GLY
259
1
Y
1
A
ALA
260
A
ALA
260
1
Y
1
A
LYS
261
A
LYS
261
1
Y
1
A
GLY
262
A
GLY
262
1
Y
1
A
THR
263
A
THR
263
1
Y
1
A
ARG
264
A
ARG
264
1
Y
1
A
LEU
265
A
LEU
265
1
Y
1
A
LYS
266
A
LYS
266
1
Y
1
A
ASN
293
A
ASN
293
1
Y
1
A
LYS
294
A
LYS
294
1
Y
1
A
ASN
295
A
ASN
295
1
Y
1
A
LYS
296
A
LYS
296
1
Y
1
A
LYS
297
A
LYS
297
1
Y
1
A
LYS
298
A
LYS
298
1
Y
1
A
LYS
299
A
LYS
299
1
Y
1
A
LYS
300
A
LYS
300
1
Y
1
A
THR
301
A
THR
301
1
Y
1
A
ASN
356
A
ASN
356
1
Y
1
A
THR
357
A
THR
357
1
Y
1
A
VAL
358
A
VAL
358
1
Y
1
A
SER
359
A
SER
359
1
Y
1
A
VAL
360
A
VAL
360
1
Y
1
A
ASN
361
A
ASN
361
1
Y
1
A
HIS
362
A
HIS
362
1
Y
1
A
HIS
363
A
HIS
363
1
Y
1
A
HIS
364
A
HIS
364
1
Y
1
A
HIS
365
A
HIS
365
1
Y
1
A
HIS
366
A
HIS
366
1
Y
1
A
A
O
O
GLU
GLY
317
321
2.12
1
A
A
OG
O
SER
SER
145
182
2.16
1
A
A
OG
OG1
SER
THR
309
312
2.17
1
A
A
O
OE1
GLU
GLN
112
116
2.18
1
7.90
1.20
103.30
111.20
A
A
A
N
CA
CB
PRO
PRO
PRO
43
43
43
N
1
A
LYS
7
152.05
-18.85
1
A
PRO
14
-29.43
-78.34
1
A
PHE
15
-173.42
144.95
1
A
SER
17
-34.54
-77.83
1
A
ARG
18
-31.51
-38.58
1
A
ARG
22
-79.95
22.24
1
A
ASP
23
32.57
30.33
1
A
LYS
25
-98.63
-146.61
1
A
ASN
39
-154.18
-28.94
1
A
PRO
40
23.02
86.68
1
A
LYS
41
172.31
45.77
1
A
GLN
42
179.57
-28.17
1
A
PRO
43
106.54
-64.85
1
A
LYS
44
-31.55
157.71
1
A
THR
46
-50.28
178.18
1
A
PRO
47
-66.79
-144.64
1
A
LYS
48
-102.61
-156.43
1
A
PHE
50
67.24
156.65
1
A
SER
51
-59.57
-79.46
1
A
PHE
52
58.79
89.95
1
A
SER
55
-110.41
62.56
1
A
SER
58
-151.03
79.03
1
A
THR
60
-84.29
-124.33
1
A
PRO
62
-47.89
12.78
1
A
ARG
75
-49.95
-10.11
1
A
ILE
77
-90.06
-66.05
1
A
GLU
79
-39.84
-72.98
1
A
GLU
87
-78.57
30.12
1
A
TYR
89
30.00
117.33
1
A
ILE
93
-171.01
102.81
1
A
THR
99
-21.45
127.74
1
A
THR
106
-67.17
5.38
1
A
MET
107
-133.80
-37.60
1
A
ASP
114
65.99
131.92
1
A
GLN
115
108.45
42.03
1
A
ILE
119
-55.22
-72.57
1
A
CYS
123
-47.95
-73.77
1
A
GLU
124
-23.53
-54.47
1
A
THR
133
55.38
-160.50
1
A
THR
134
162.46
-28.27
1
A
ASP
136
-81.34
40.60
1
A
ASN
137
-153.35
9.60
1
A
MET
138
-40.76
-90.02
1
A
SER
139
63.18
96.26
1
A
TYR
140
-121.18
-57.34
1
A
SER
141
65.17
115.57
1
A
GLU
152
51.76
19.49
1
A
VAL
154
-55.26
179.32
1
A
ARG
155
-171.44
128.70
1
A
ASN
162
35.31
-134.75
1
A
LYS
163
118.02
152.33
1
A
LEU
166
-168.49
-119.60
1
A
ARG
167
-111.15
-160.12
1
A
PRO
172
-33.81
-37.69
1
A
TYR
177
-165.57
-156.88
1
A
GLU
179
-62.58
89.84
1
A
ASP
180
64.68
-72.54
1
A
LEU
181
71.85
-106.58
1
A
SER
182
-160.25
116.79
1
A
ALA
185
-60.93
-158.77
1
A
VAL
186
169.74
-46.72
1
A
THR
187
41.81
106.53
1
A
SER
188
143.27
93.96
1
A
TYR
189
-24.48
-54.12
1
A
ASP
197
-31.79
-80.45
1
A
ASN
200
-30.14
-32.52
1
A
PRO
202
-46.90
-8.25
1
A
THR
204
-176.85
104.40
1
A
SER
214
-60.16
1.21
1
A
ARG
216
-62.11
15.27
1
A
THR
234
53.91
91.23
1
A
ASN
235
-31.15
124.96
1
A
ILE
236
-173.19
82.76
1
A
ALA
250
-58.99
-174.32
1
A
SER
252
49.16
119.05
1
A
ASN
270
97.38
137.07
1
A
ASN
272
149.27
140.55
1
A
SER
274
-0.56
-77.06
1
A
LEU
275
-57.39
-82.69
1
A
THR
276
-26.31
-61.11
1
A
ALA
284
-73.62
-73.18
1
A
ALA
286
-104.72
79.81
1
A
GLU
287
170.81
80.80
1
A
ASP
289
52.81
145.41
1
A
SER
290
58.99
84.74
1
A
ILE
304
44.88
123.52
1
A
ASP
308
-59.48
0.44
1
A
TRP
313
-48.09
-75.22
1
A
LEU
314
-23.69
-35.44
1
A
ARG
316
-66.46
-97.88
1
A
ASN
322
59.73
152.05
1
A
SER
323
66.23
94.30
1
A
ARG
324
-48.57
166.30
1
A
PRO
333
-47.06
-16.99
1
A
ARG
346
-41.20
-84.93
1
A
TYR
347
-65.27
24.84
1
A
ALA
351
-67.46
69.79
1
A
GLN
353
176.73
-62.69
1
A
ILE
354
-55.49
172.73
protein_rep.param
protein.top
adp.param
adp.top
ion.param
ion.top
water_rep.param
water_rep.top
trs.param
trs.top
74.6
7.18
0.00
0.00
57.38
0.00
-64.56
0.349
0.021
0.292
0.292
3.61
14.99
264
2671
9.9
69.5
RANDOM
287001.19
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
1VFV
FLAT MODEL
10.1994
0.09667957
0.75
0.65
15.00
0.60
0.37
3.61
14.99
27
2504
44
0
2433
0.011
1.6
25.1
1.15
4.87
1.50
8.27
2.00
5.60
2.00
9.01
2.50
0.473
0.089
0.340
3.82
28
229
6
10.9
42.5
3.60
50.00
2ZFK
3235
1
refinement
CNS
1.0
data collection
ADSC
Quantum
data reduction
HKL-2000
data scaling
HKL-2000
phasing
CNS
Crystal Structure of the Kif1A Motor Domain during Mg release: Mg-releasing Transition-2
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
A
ASN
16
A
ASN
16
HELX_P
A
ARG
22
A
ARG
22
1
1
7
A
SER
69
A
SER
69
HELX_P
A
ILE
77
A
ILE
77
1
2
9
A
ILE
77
A
ILE
77
HELX_P
A
GLU
87
A
GLU
87
1
3
11
A
SER
104
A
SER
104
HELX_P
A
GLY
109
A
GLY
109
1
4
6
A
GLY
117
A
GLY
117
HELX_P
A
ASP
132
A
ASP
132
1
5
16
A
SER
188
A
SER
188
HELX_P
A
LYS
201
A
LYS
201
1
6
14
A
GLU
212
A
GLU
212
HELX_P
A
SER
215
A
SER
215
5
7
4
A
LYS
273
A
LYS
273
HELX_P
A
ALA
286
A
ALA
286
1
8
14
A
SER
309
A
SER
309
HELX_P
A
LEU
315
A
LEU
315
1
9
7
A
ALA
334
A
ALA
334
HELX_P
A
ILE
336
A
ILE
336
5
10
3
A
ASN
337
A
ASN
337
HELX_P
A
ARG
350
A
ARG
350
1
11
14
metalc
2.687
A
SER
104
A
OG
SER
104
1_555
A
MG
2001
B
MG
MG
1_555
TRANSPORT PROTEIN
kinesin, Alpha and Beta Protein, Enzyme, ATPase, P-loop, Motor Protein, ATP-binding, Coiled coil, Microtubule, Nucleotide-binding, TRANSPORT PROTEIN
A
THR
46
A
THR
46
1
A
PRO
47
A
PRO
47
0.22
KIF1A_MOUSE
UNP
1
1
P33173
MAGASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEE
MLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNP
KNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEK
VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLG
GNSRTAMVAALSPADINYDETLSTLRYADRAKQIR
KIF5C_MOUSE
UNP
1
329
P28738
NTVSVN
1
355
2ZFK
1
355
P33173
A
1
1
355
329
334
2ZFK
356
361
P28738
A
2
356
361
1
expression tag
HIS
362
2ZFK
A
P28738
UNP
362
1
expression tag
HIS
363
2ZFK
A
P28738
UNP
363
1
expression tag
HIS
364
2ZFK
A
P28738
UNP
364
1
expression tag
HIS
365
2ZFK
A
P28738
UNP
365
1
expression tag
HIS
366
2ZFK
A
P28738
UNP
366
7
2
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
54
A
TYR
54
A
TYR
56
A
TYR
56
A
ALA
9
A
ALA
9
A
VAL
12
A
VAL
12
A
THR
325
A
THR
325
A
LEU
331
A
LEU
331
A
VAL
91
A
VAL
91
A
GLY
97
A
GLY
97
A
THR
238
A
THR
238
A
GLY
251
A
GLY
251
A
SER
217
A
SER
217
A
ARG
229
A
ARG
229
A
VAL
142
A
VAL
142
A
TYR
150
A
TYR
150
A
VAL
168
A
VAL
168
A
HIS
171
A
HIS
171
A
GLY
175
A
GLY
175
A
VAL
178
A
VAL
178
BINDING SITE FOR RESIDUE MG A 2001
A
MG
2001
Software
1
BINDING SITE FOR RESIDUE ADP A 2000
A
ADP
2000
Software
12
A
SER
104
A
SER
104
1
1_555
A
ARG
13
A
ARG
13
12
1_555
A
SER
58
A
SER
58
12
1_555
A
ASP
64
A
ASP
64
12
4_545
A
ILE
65
A
ILE
65
12
4_545
A
TYR
67
A
TYR
67
12
1_555
A
GLN
98
A
GLN
98
12
1_555
A
GLY
100
A
GLY
100
12
1_555
A
ALA
101
A
ALA
101
12
1_555
A
GLY
102
A
GLY
102
12
1_555
A
LYS
103
A
LYS
103
12
1_555
A
SER
104
A
SER
104
12
1_555
A
TYR
105
A
TYR
105
12
1_555
19
P 21 21 21