0.027812
0.000000
0.003562
0.000000
0.009378
0.000000
0.000000
0.000000
0.020023
0.00000
0.00000
0.00000
Arold, S.T.
Gondeau, C.
Lionne, C.
Chaloin, L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
97.30
90.00
35.956
106.627
50.350
C10 H15 N5 O10 P2
427.201
n
ADENOSINE-5'-DIPHOSPHATE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
S
P
N
6
N
O
N
7
N
O
N
8
N
O
N
9
N
O
N
10
N
C
N
11
R
C
N
12
N
O
N
13
S
C
N
14
N
O
N
15
R
C
N
16
N
O
N
17
R
C
Y
18
N
N
Y
19
N
C
Y
20
N
N
Y
21
N
C
Y
22
N
C
N
23
N
N
Y
24
N
N
Y
25
N
C
Y
26
N
N
Y
27
N
C
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
N
N
44
S
C
N
45
N
C
N
46
N
O
N
47
N
C
N
48
N
O
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
N
N
57
S
C
N
58
N
C
N
59
N
O
N
60
N
C
N
61
N
C
N
62
N
C
N
63
N
N
N
64
N
C
N
65
N
N
N
66
N
N
N
67
N
O
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
N
N
84
S
C
N
85
N
C
N
86
N
O
N
87
N
C
N
88
N
C
N
89
N
O
N
90
N
N
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
N
N
101
S
C
N
102
N
C
N
103
N
O
N
104
N
C
N
105
N
C
N
106
N
O
N
107
N
O
N
108
N
O
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
N
N
117
R
C
N
118
N
C
N
119
N
O
N
120
N
C
N
121
N
S
N
122
N
O
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
N
N
131
S
C
N
132
N
C
N
133
N
O
N
134
N
C
N
135
N
C
N
136
N
C
N
137
N
O
N
138
N
N
N
139
N
O
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
N
N
151
S
C
N
152
N
C
N
153
N
O
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
O
N
158
N
O
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
N
C
N
171
N
C
N
172
N
O
N
173
N
O
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
N
N
180
S
C
N
181
N
C
N
182
N
O
N
183
N
C
Y
184
N
C
Y
185
N
N
Y
186
N
C
Y
187
N
C
Y
188
N
N
N
189
N
O
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
N
N
204
S
C
N
205
N
C
N
206
N
O
N
207
S
C
N
208
N
C
N
209
N
C
N
210
N
C
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
N
N
226
S
C
N
227
N
C
N
228
N
O
N
229
N
C
N
230
N
C
N
231
N
C
N
232
N
C
N
233
N
O
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
N
252
N
C
N
253
N
C
N
254
N
C
N
255
N
N
N
256
N
O
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
N
N
273
S
C
N
274
N
C
N
275
N
O
N
276
N
C
N
277
N
C
N
278
N
S
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
N
N
293
S
C
N
294
N
C
N
295
N
O
N
296
N
C
Y
297
N
C
Y
298
N
C
Y
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
N
303
N
O
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
N
N
316
S
C
N
317
N
C
N
318
N
O
N
319
N
C
N
320
N
C
N
321
N
C
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
N
N
333
S
C
N
334
N
C
N
335
N
O
N
336
N
C
N
337
N
O
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
R
C
N
351
N
O
N
352
N
C
N
353
N
O
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
N
N
364
S
C
N
365
N
C
N
366
N
O
N
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
N
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
N
N
391
S
C
N
392
N
C
N
393
N
O
N
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
N
401
N
O
N
402
N
O
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
N
N
415
S
C
N
416
N
C
N
417
N
O
N
418
N
C
N
419
N
C
N
420
N
C
N
421
N
O
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
Y
30
N
sing
Y
31
N
sing
Y
32
N
doub
N
33
N
sing
Y
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
doub
N
39
N
sing
N
40
N
sing
Y
41
N
sing
Y
42
N
doub
N
43
N
sing
Y
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
doub
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
Y
184
N
sing
Y
185
N
doub
Y
186
N
doub
N
187
N
sing
Y
188
N
sing
N
189
N
sing
Y
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
Y
292
N
doub
Y
293
N
sing
Y
294
N
sing
N
295
N
sing
Y
296
N
doub
N
297
N
sing
Y
298
N
doub
N
299
N
sing
Y
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
doub
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
Y
361
N
doub
Y
362
N
sing
Y
363
N
sing
N
364
N
sing
Y
365
N
doub
Y
366
N
sing
Y
367
N
sing
N
368
N
sing
Y
369
N
sing
Y
370
N
doub
N
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
doub
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
Y
389
N
doub
Y
390
N
sing
Y
391
N
sing
N
392
N
sing
Y
393
N
doub
N
394
N
sing
Y
395
N
doub
N
396
N
sing
Y
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
doub
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
36
3620
3629
10.1093/nar/gkn212
18463139
Molecular basis for the lack of enantioselectivity of human 3-phosphoglycerate kinase
2008
10.2210/pdb2zgv/pdb
pdb_00002zgv
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
AREA DETECTOR
2007-05-22
SINGLE WAVELENGTH
M
x-ray
1
0.934
1.0
ID14-4
ESRF
0.934
SYNCHROTRON
ESRF BEAMLINE ID14-4
44954.895
Phosphoglycerate kinase 1
2.7.2.3
1
man
polymer
427.201
ADENOSINE-5'-DIPHOSPHATE
1
syn
non-polymer
18.015
water
234
nat
water
3-Phosphoglycerate Kinase, Primer recognition protein 2, PRP 2, Cell migration-inducing gene 10 protein
no
no
GSHMSLSNKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDGVPMPDKYS
LEPVAVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLENLRFHVEEEGKGKDASGNKVKAEPAKIEAFRASLSKL
GDVYVNDAFGTAHRAHSSMVGVNLPQKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIG
GGMAFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCG
PESSKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGG
ASLELLEGKVLPGVDALSNI
GSHMSLSNKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDGVPMPDKYS
LEPVAVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLENLRFHVEEEGKGKDASGNKVKAEPAKIEAFRASLSKL
GDVYVNDAFGTAHRAHSSMVGVNLPQKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIG
GGMAFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCG
PESSKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGG
ASLELLEGKVLPGVDALSNI
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
PGK1
Homo sapiens
Escherichia coli
BL21 (DE3)/pDIA17
PLASMID
pET28a
1
2.14
42.60
VAPOR DIFFUSION, HANGING DROP
8.3
2.6M NaKPO4, pH 8.3, VAPOR DIFFUSION, HANGING DROP, temperature 291K
291
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2008-07-01
1
1
2011-07-13
1
2
2023-11-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Crystal Structure of human phosphoglycerate kinase bound to 3-phosphoglycerate
Crystal Structure of human phosphoglycerate kinase bound to 3-phosphoglycerate and L-ADP
Crystal Structure of human phosphoglycerate kinase bound to D-CDP
Crystal Structure of human phosphoglycerate kinase bound to 3-phosphoglycerate and L-CDP
PDBJ
Y
PDBJ
2008-01-26
REL
REL
ADP
ADENOSINE-5'-DIPHOSPHATE
HOH
water
1VJC
PDB
experimental model
ADP
1
2
ADP
ADP
417
A
HOH
1
3
HOH
HOH
418
A
HOH
2
3
HOH
HOH
419
A
HOH
3
3
HOH
HOH
420
A
HOH
4
3
HOH
HOH
421
A
HOH
5
3
HOH
HOH
422
A
HOH
6
3
HOH
HOH
423
A
HOH
7
3
HOH
HOH
424
A
HOH
8
3
HOH
HOH
425
A
HOH
9
3
HOH
HOH
426
A
HOH
10
3
HOH
HOH
427
A
HOH
11
3
HOH
HOH
428
A
HOH
12
3
HOH
HOH
429
A
HOH
13
3
HOH
HOH
430
A
HOH
14
3
HOH
HOH
431
A
HOH
15
3
HOH
HOH
432
A
HOH
16
3
HOH
HOH
433
A
HOH
17
3
HOH
HOH
434
A
HOH
18
3
HOH
HOH
435
A
HOH
19
3
HOH
HOH
436
A
HOH
20
3
HOH
HOH
437
A
HOH
21
3
HOH
HOH
438
A
HOH
22
3
HOH
HOH
439
A
HOH
23
3
HOH
HOH
440
A
HOH
24
3
HOH
HOH
441
A
HOH
25
3
HOH
HOH
442
A
HOH
26
3
HOH
HOH
443
A
HOH
27
3
HOH
HOH
444
A
HOH
28
3
HOH
HOH
445
A
HOH
29
3
HOH
HOH
446
A
HOH
30
3
HOH
HOH
447
A
HOH
31
3
HOH
HOH
448
A
HOH
32
3
HOH
HOH
449
A
HOH
33
3
HOH
HOH
450
A
HOH
34
3
HOH
HOH
451
A
HOH
35
3
HOH
HOH
452
A
HOH
36
3
HOH
HOH
453
A
HOH
37
3
HOH
HOH
454
A
HOH
38
3
HOH
HOH
455
A
HOH
39
3
HOH
HOH
456
A
HOH
40
3
HOH
HOH
457
A
HOH
41
3
HOH
HOH
458
A
HOH
42
3
HOH
HOH
459
A
HOH
43
3
HOH
HOH
460
A
HOH
44
3
HOH
HOH
461
A
HOH
45
3
HOH
HOH
462
A
HOH
46
3
HOH
HOH
463
A
HOH
47
3
HOH
HOH
464
A
HOH
48
3
HOH
HOH
465
A
HOH
49
3
HOH
HOH
466
A
HOH
50
3
HOH
HOH
467
A
HOH
51
3
HOH
HOH
468
A
HOH
52
3
HOH
HOH
469
A
HOH
53
3
HOH
HOH
470
A
HOH
54
3
HOH
HOH
471
A
HOH
55
3
HOH
HOH
472
A
HOH
56
3
HOH
HOH
473
A
HOH
57
3
HOH
HOH
474
A
HOH
58
3
HOH
HOH
475
A
HOH
59
3
HOH
HOH
476
A
HOH
60
3
HOH
HOH
477
A
HOH
61
3
HOH
HOH
478
A
HOH
62
3
HOH
HOH
479
A
HOH
63
3
HOH
HOH
480
A
HOH
64
3
HOH
HOH
481
A
HOH
65
3
HOH
HOH
482
A
HOH
66
3
HOH
HOH
483
A
HOH
67
3
HOH
HOH
484
A
HOH
68
3
HOH
HOH
485
A
HOH
69
3
HOH
HOH
486
A
HOH
70
3
HOH
HOH
487
A
HOH
71
3
HOH
HOH
488
A
HOH
72
3
HOH
HOH
489
A
HOH
73
3
HOH
HOH
490
A
HOH
74
3
HOH
HOH
491
A
HOH
75
3
HOH
HOH
492
A
HOH
76
3
HOH
HOH
493
A
HOH
77
3
HOH
HOH
494
A
HOH
78
3
HOH
HOH
495
A
HOH
79
3
HOH
HOH
496
A
HOH
80
3
HOH
HOH
497
A
HOH
81
3
HOH
HOH
498
A
HOH
82
3
HOH
HOH
499
A
HOH
83
3
HOH
HOH
500
A
HOH
84
3
HOH
HOH
501
A
HOH
85
3
HOH
HOH
502
A
HOH
86
3
HOH
HOH
503
A
HOH
87
3
HOH
HOH
504
A
HOH
88
3
HOH
HOH
505
A
HOH
89
3
HOH
HOH
506
A
HOH
90
3
HOH
HOH
507
A
HOH
91
3
HOH
HOH
508
A
HOH
92
3
HOH
HOH
509
A
HOH
93
3
HOH
HOH
510
A
HOH
94
3
HOH
HOH
511
A
HOH
95
3
HOH
HOH
512
A
HOH
96
3
HOH
HOH
513
A
HOH
97
3
HOH
HOH
514
A
HOH
98
3
HOH
HOH
515
A
HOH
99
3
HOH
HOH
516
A
HOH
100
3
HOH
HOH
517
A
HOH
101
3
HOH
HOH
518
A
HOH
102
3
HOH
HOH
519
A
HOH
103
3
HOH
HOH
520
A
HOH
104
3
HOH
HOH
521
A
HOH
105
3
HOH
HOH
522
A
HOH
106
3
HOH
HOH
523
A
HOH
107
3
HOH
HOH
524
A
HOH
108
3
HOH
HOH
525
A
HOH
109
3
HOH
HOH
526
A
HOH
110
3
HOH
HOH
527
A
HOH
111
3
HOH
HOH
528
A
HOH
112
3
HOH
HOH
529
A
HOH
113
3
HOH
HOH
530
A
HOH
114
3
HOH
HOH
531
A
HOH
115
3
HOH
HOH
532
A
HOH
116
3
HOH
HOH
533
A
HOH
117
3
HOH
HOH
534
A
HOH
118
3
HOH
HOH
535
A
HOH
119
3
HOH
HOH
536
A
HOH
120
3
HOH
HOH
537
A
HOH
121
3
HOH
HOH
538
A
HOH
122
3
HOH
HOH
539
A
HOH
123
3
HOH
HOH
540
A
HOH
124
3
HOH
HOH
541
A
HOH
125
3
HOH
HOH
542
A
HOH
126
3
HOH
HOH
543
A
HOH
127
3
HOH
HOH
544
A
HOH
128
3
HOH
HOH
545
A
HOH
129
3
HOH
HOH
546
A
HOH
130
3
HOH
HOH
547
A
HOH
131
3
HOH
HOH
548
A
HOH
132
3
HOH
HOH
549
A
HOH
133
3
HOH
HOH
550
A
HOH
134
3
HOH
HOH
551
A
HOH
135
3
HOH
HOH
552
A
HOH
136
3
HOH
HOH
553
A
HOH
137
3
HOH
HOH
554
A
HOH
138
3
HOH
HOH
555
A
HOH
139
3
HOH
HOH
556
A
HOH
140
3
HOH
HOH
557
A
HOH
141
3
HOH
HOH
558
A
HOH
142
3
HOH
HOH
559
A
HOH
143
3
HOH
HOH
560
A
HOH
144
3
HOH
HOH
561
A
HOH
145
3
HOH
HOH
562
A
HOH
146
3
HOH
HOH
563
A
HOH
147
3
HOH
HOH
564
A
HOH
148
3
HOH
HOH
565
A
HOH
149
3
HOH
HOH
566
A
HOH
150
3
HOH
HOH
567
A
HOH
151
3
HOH
HOH
568
A
HOH
152
3
HOH
HOH
569
A
HOH
153
3
HOH
HOH
570
A
HOH
154
3
HOH
HOH
571
A
HOH
155
3
HOH
HOH
572
A
HOH
156
3
HOH
HOH
573
A
HOH
157
3
HOH
HOH
574
A
HOH
158
3
HOH
HOH
575
A
HOH
159
3
HOH
HOH
576
A
HOH
160
3
HOH
HOH
577
A
HOH
161
3
HOH
HOH
578
A
HOH
162
3
HOH
HOH
579
A
HOH
163
3
HOH
HOH
580
A
HOH
164
3
HOH
HOH
581
A
HOH
165
3
HOH
HOH
582
A
HOH
166
3
HOH
HOH
583
A
HOH
167
3
HOH
HOH
584
A
HOH
168
3
HOH
HOH
585
A
HOH
169
3
HOH
HOH
586
A
HOH
170
3
HOH
HOH
587
A
HOH
171
3
HOH
HOH
588
A
HOH
172
3
HOH
HOH
589
A
HOH
173
3
HOH
HOH
590
A
HOH
174
3
HOH
HOH
591
A
HOH
175
3
HOH
HOH
592
A
HOH
176
3
HOH
HOH
593
A
HOH
177
3
HOH
HOH
594
A
HOH
178
3
HOH
HOH
595
A
HOH
179
3
HOH
HOH
596
A
HOH
180
3
HOH
HOH
597
A
HOH
181
3
HOH
HOH
598
A
HOH
182
3
HOH
HOH
599
A
HOH
183
3
HOH
HOH
600
A
HOH
184
3
HOH
HOH
601
A
HOH
185
3
HOH
HOH
602
A
HOH
186
3
HOH
HOH
603
A
HOH
187
3
HOH
HOH
604
A
HOH
188
3
HOH
HOH
605
A
HOH
189
3
HOH
HOH
606
A
HOH
190
3
HOH
HOH
607
A
HOH
191
3
HOH
HOH
608
A
HOH
192
3
HOH
HOH
609
A
HOH
193
3
HOH
HOH
610
A
HOH
194
3
HOH
HOH
611
A
HOH
195
3
HOH
HOH
612
A
HOH
196
3
HOH
HOH
613
A
HOH
197
3
HOH
HOH
614
A
HOH
198
3
HOH
HOH
615
A
HOH
199
3
HOH
HOH
616
A
HOH
200
3
HOH
HOH
617
A
HOH
201
3
HOH
HOH
618
A
HOH
202
3
HOH
HOH
619
A
HOH
203
3
HOH
HOH
620
A
HOH
204
3
HOH
HOH
621
A
HOH
205
3
HOH
HOH
622
A
HOH
206
3
HOH
HOH
623
A
HOH
207
3
HOH
HOH
624
A
HOH
208
3
HOH
HOH
625
A
HOH
209
3
HOH
HOH
626
A
HOH
210
3
HOH
HOH
627
A
HOH
211
3
HOH
HOH
628
A
HOH
212
3
HOH
HOH
629
A
HOH
213
3
HOH
HOH
630
A
HOH
214
3
HOH
HOH
631
A
HOH
215
3
HOH
HOH
632
A
HOH
216
3
HOH
HOH
633
A
HOH
217
3
HOH
HOH
634
A
HOH
218
3
HOH
HOH
635
A
HOH
219
3
HOH
HOH
636
A
HOH
220
3
HOH
HOH
637
A
HOH
221
3
HOH
HOH
638
A
HOH
222
3
HOH
HOH
639
A
HOH
223
3
HOH
HOH
640
A
HOH
224
3
HOH
HOH
641
A
HOH
225
3
HOH
HOH
642
A
HOH
226
3
HOH
HOH
643
A
HOH
227
3
HOH
HOH
644
A
HOH
228
3
HOH
HOH
645
A
HOH
229
3
HOH
HOH
646
A
HOH
230
3
HOH
HOH
647
A
HOH
231
3
HOH
HOH
648
A
HOH
232
3
HOH
HOH
649
A
HOH
233
3
HOH
HOH
650
A
HOH
234
3
HOH
HOH
651
A
n
1
-3
A
n
2
-2
A
n
3
-1
A
n
4
0
A
n
5
1
A
LEU
2
n
6
LEU
2
A
SER
3
n
7
SER
3
A
ASN
4
n
8
ASN
4
A
LYS
5
n
9
LYS
5
A
LEU
6
n
10
LEU
6
A
THR
7
n
11
THR
7
A
LEU
8
n
12
LEU
8
A
ASP
9
n
13
ASP
9
A
LYS
10
n
14
LYS
10
A
LEU
11
n
15
LEU
11
A
ASP
12
n
16
ASP
12
A
VAL
13
n
17
VAL
13
A
LYS
14
n
18
LYS
14
A
GLY
15
n
19
GLY
15
A
LYS
16
n
20
LYS
16
A
ARG
17
n
21
ARG
17
A
VAL
18
n
22
VAL
18
A
VAL
19
n
23
VAL
19
A
MET
20
n
24
MET
20
A
ARG
21
n
25
ARG
21
A
VAL
22
n
26
VAL
22
A
ASP
23
n
27
ASP
23
A
PHE
24
n
28
PHE
24
A
ASN
25
n
29
ASN
25
A
VAL
26
n
30
VAL
26
A
PRO
27
n
31
PRO
27
A
MET
28
n
32
MET
28
A
LYS
29
n
33
LYS
29
A
ASN
30
n
34
ASN
30
A
ASN
31
n
35
ASN
31
A
GLN
32
n
36
GLN
32
A
ILE
33
n
37
ILE
33
A
THR
34
n
38
THR
34
A
ASN
35
n
39
ASN
35
A
ASN
36
n
40
ASN
36
A
GLN
37
n
41
GLN
37
A
ARG
38
n
42
ARG
38
A
ILE
39
n
43
ILE
39
A
LYS
40
n
44
LYS
40
A
ALA
41
n
45
ALA
41
A
ALA
42
n
46
ALA
42
A
VAL
43
n
47
VAL
43
A
PRO
44
n
48
PRO
44
A
SER
45
n
49
SER
45
A
ILE
46
n
50
ILE
46
A
LYS
47
n
51
LYS
47
A
PHE
48
n
52
PHE
48
A
CYS
49
n
53
CYS
49
A
LEU
50
n
54
LEU
50
A
ASP
51
n
55
ASP
51
A
ASN
52
n
56
ASN
52
A
GLY
53
n
57
GLY
53
A
ALA
54
n
58
ALA
54
A
LYS
55
n
59
LYS
55
A
SER
56
n
60
SER
56
A
VAL
57
n
61
VAL
57
A
VAL
58
n
62
VAL
58
A
LEU
59
n
63
LEU
59
A
MET
60
n
64
MET
60
A
SER
61
n
65
SER
61
A
HIS
62
n
66
HIS
62
A
LEU
63
n
67
LEU
63
A
GLY
64
n
68
GLY
64
A
ARG
65
n
69
ARG
65
A
PRO
66
n
70
PRO
66
A
ASP
67
n
71
ASP
67
A
GLY
68
n
72
GLY
68
A
VAL
69
n
73
VAL
69
A
PRO
70
n
74
PRO
70
A
MET
71
n
75
MET
71
A
PRO
72
n
76
PRO
72
A
ASP
73
n
77
ASP
73
A
LYS
74
n
78
LYS
74
A
TYR
75
n
79
TYR
75
A
SER
76
n
80
SER
76
A
LEU
77
n
81
LEU
77
A
GLU
78
n
82
GLU
78
A
PRO
79
n
83
PRO
79
A
VAL
80
n
84
VAL
80
A
ALA
81
n
85
ALA
81
A
VAL
82
n
86
VAL
82
A
GLU
83
n
87
GLU
83
A
LEU
84
n
88
LEU
84
A
LYS
85
n
89
LYS
85
A
SER
86
n
90
SER
86
A
LEU
87
n
91
LEU
87
A
LEU
88
n
92
LEU
88
A
GLY
89
n
93
GLY
89
A
LYS
90
n
94
LYS
90
A
ASP
91
n
95
ASP
91
A
VAL
92
n
96
VAL
92
A
LEU
93
n
97
LEU
93
A
PHE
94
n
98
PHE
94
A
LEU
95
n
99
LEU
95
A
LYS
96
n
100
LYS
96
A
ASP
97
n
101
ASP
97
A
CYS
98
n
102
CYS
98
A
VAL
99
n
103
VAL
99
A
GLY
100
n
104
GLY
100
A
PRO
101
n
105
PRO
101
A
GLU
102
n
106
GLU
102
A
VAL
103
n
107
VAL
103
A
GLU
104
n
108
GLU
104
A
LYS
105
n
109
LYS
105
A
ALA
106
n
110
ALA
106
A
CYS
107
n
111
CYS
107
A
ALA
108
n
112
ALA
108
A
ASN
109
n
113
ASN
109
A
PRO
110
n
114
PRO
110
A
ALA
111
n
115
ALA
111
A
ALA
112
n
116
ALA
112
A
GLY
113
n
117
GLY
113
A
SER
114
n
118
SER
114
A
VAL
115
n
119
VAL
115
A
ILE
116
n
120
ILE
116
A
LEU
117
n
121
LEU
117
A
LEU
118
n
122
LEU
118
A
GLU
119
n
123
GLU
119
A
ASN
120
n
124
ASN
120
A
LEU
121
n
125
LEU
121
A
ARG
122
n
126
ARG
122
A
PHE
123
n
127
PHE
123
A
HIS
124
n
128
HIS
124
A
VAL
125
n
129
VAL
125
A
GLU
126
n
130
GLU
126
A
GLU
127
n
131
GLU
127
A
GLU
128
n
132
GLU
128
A
GLY
129
n
133
GLY
129
A
LYS
130
n
134
LYS
130
A
GLY
131
n
135
GLY
131
A
LYS
132
n
136
LYS
132
A
ASP
133
n
137
ASP
133
A
ALA
134
n
138
ALA
134
A
SER
135
n
139
SER
135
A
GLY
136
n
140
GLY
136
A
ASN
137
n
141
ASN
137
A
LYS
138
n
142
LYS
138
A
VAL
139
n
143
VAL
139
A
LYS
140
n
144
LYS
140
A
ALA
141
n
145
ALA
141
A
GLU
142
n
146
GLU
142
A
PRO
143
n
147
PRO
143
A
ALA
144
n
148
ALA
144
A
LYS
145
n
149
LYS
145
A
ILE
146
n
150
ILE
146
A
GLU
147
n
151
GLU
147
A
ALA
148
n
152
ALA
148
A
PHE
149
n
153
PHE
149
A
ARG
150
n
154
ARG
150
A
ALA
151
n
155
ALA
151
A
SER
152
n
156
SER
152
A
LEU
153
n
157
LEU
153
A
SER
154
n
158
SER
154
A
LYS
155
n
159
LYS
155
A
LEU
156
n
160
LEU
156
A
GLY
157
n
161
GLY
157
A
ASP
158
n
162
ASP
158
A
VAL
159
n
163
VAL
159
A
TYR
160
n
164
TYR
160
A
VAL
161
n
165
VAL
161
A
ASN
162
n
166
ASN
162
A
ASP
163
n
167
ASP
163
A
ALA
164
n
168
ALA
164
A
PHE
165
n
169
PHE
165
A
GLY
166
n
170
GLY
166
A
THR
167
n
171
THR
167
A
ALA
168
n
172
ALA
168
A
HIS
169
n
173
HIS
169
A
ARG
170
n
174
ARG
170
A
ALA
171
n
175
ALA
171
A
HIS
172
n
176
HIS
172
A
SER
173
n
177
SER
173
A
SER
174
n
178
SER
174
A
MET
175
n
179
MET
175
A
VAL
176
n
180
VAL
176
A
GLY
177
n
181
GLY
177
A
VAL
178
n
182
VAL
178
A
ASN
179
n
183
ASN
179
A
LEU
180
n
184
LEU
180
A
PRO
181
n
185
PRO
181
A
GLN
182
n
186
GLN
182
A
LYS
183
n
187
LYS
183
A
ALA
184
n
188
ALA
184
A
GLY
185
n
189
GLY
185
A
GLY
186
n
190
GLY
186
A
PHE
187
n
191
PHE
187
A
LEU
188
n
192
LEU
188
A
MET
189
n
193
MET
189
A
LYS
190
n
194
LYS
190
A
LYS
191
n
195
LYS
191
A
GLU
192
n
196
GLU
192
A
LEU
193
n
197
LEU
193
A
ASN
194
n
198
ASN
194
A
TYR
195
n
199
TYR
195
A
PHE
196
n
200
PHE
196
A
ALA
197
n
201
ALA
197
A
LYS
198
n
202
LYS
198
A
ALA
199
n
203
ALA
199
A
LEU
200
n
204
LEU
200
A
GLU
201
n
205
GLU
201
A
SER
202
n
206
SER
202
A
PRO
203
n
207
PRO
203
A
GLU
204
n
208
GLU
204
A
ARG
205
n
209
ARG
205
A
PRO
206
n
210
PRO
206
A
PHE
207
n
211
PHE
207
A
LEU
208
n
212
LEU
208
A
ALA
209
n
213
ALA
209
A
ILE
210
n
214
ILE
210
A
LEU
211
n
215
LEU
211
A
GLY
212
n
216
GLY
212
A
GLY
213
n
217
GLY
213
A
ALA
214
n
218
ALA
214
A
LYS
215
n
219
LYS
215
A
VAL
216
n
220
VAL
216
A
ALA
217
n
221
ALA
217
A
ASP
218
n
222
ASP
218
A
LYS
219
n
223
LYS
219
A
ILE
220
n
224
ILE
220
A
GLN
221
n
225
GLN
221
A
LEU
222
n
226
LEU
222
A
ILE
223
n
227
ILE
223
A
ASN
224
n
228
ASN
224
A
ASN
225
n
229
ASN
225
A
MET
226
n
230
MET
226
A
LEU
227
n
231
LEU
227
A
ASP
228
n
232
ASP
228
A
LYS
229
n
233
LYS
229
A
VAL
230
n
234
VAL
230
A
ASN
231
n
235
ASN
231
A
GLU
232
n
236
GLU
232
A
MET
233
n
237
MET
233
A
ILE
234
n
238
ILE
234
A
ILE
235
n
239
ILE
235
A
GLY
236
n
240
GLY
236
A
GLY
237
n
241
GLY
237
A
GLY
238
n
242
GLY
238
A
MET
239
n
243
MET
239
A
ALA
240
n
244
ALA
240
A
PHE
241
n
245
PHE
241
A
THR
242
n
246
THR
242
A
PHE
243
n
247
PHE
243
A
LEU
244
n
248
LEU
244
A
LYS
245
n
249
LYS
245
A
VAL
246
n
250
VAL
246
A
LEU
247
n
251
LEU
247
A
ASN
248
n
252
ASN
248
A
ASN
249
n
253
ASN
249
A
MET
250
n
254
MET
250
A
GLU
251
n
255
GLU
251
A
ILE
252
n
256
ILE
252
A
GLY
253
n
257
GLY
253
A
THR
254
n
258
THR
254
A
SER
255
n
259
SER
255
A
LEU
256
n
260
LEU
256
A
PHE
257
n
261
PHE
257
A
ASP
258
n
262
ASP
258
A
GLU
259
n
263
GLU
259
A
GLU
260
n
264
GLU
260
A
GLY
261
n
265
GLY
261
A
ALA
262
n
266
ALA
262
A
LYS
263
n
267
LYS
263
A
ILE
264
n
268
ILE
264
A
VAL
265
n
269
VAL
265
A
LYS
266
n
270
LYS
266
A
ASP
267
n
271
ASP
267
A
LEU
268
n
272
LEU
268
A
MET
269
n
273
MET
269
A
SER
270
n
274
SER
270
A
LYS
271
n
275
LYS
271
A
ALA
272
n
276
ALA
272
A
GLU
273
n
277
GLU
273
A
LYS
274
n
278
LYS
274
A
ASN
275
n
279
ASN
275
A
GLY
276
n
280
GLY
276
A
VAL
277
n
281
VAL
277
A
LYS
278
n
282
LYS
278
A
ILE
279
n
283
ILE
279
A
THR
280
n
284
THR
280
A
LEU
281
n
285
LEU
281
A
PRO
282
n
286
PRO
282
A
VAL
283
n
287
VAL
283
A
ASP
284
n
288
ASP
284
A
PHE
285
n
289
PHE
285
A
VAL
286
n
290
VAL
286
A
THR
287
n
291
THR
287
A
ALA
288
n
292
ALA
288
A
ASP
289
n
293
ASP
289
A
LYS
290
n
294
LYS
290
A
PHE
291
n
295
PHE
291
A
ASP
292
n
296
ASP
292
A
GLU
293
n
297
GLU
293
A
ASN
294
n
298
ASN
294
A
ALA
295
n
299
ALA
295
A
LYS
296
n
300
LYS
296
A
THR
297
n
301
THR
297
A
GLY
298
n
302
GLY
298
A
GLN
299
n
303
GLN
299
A
ALA
300
n
304
ALA
300
A
THR
301
n
305
THR
301
A
VAL
302
n
306
VAL
302
A
ALA
303
n
307
ALA
303
A
SER
304
n
308
SER
304
A
GLY
305
n
309
GLY
305
A
ILE
306
n
310
ILE
306
A
PRO
307
n
311
PRO
307
A
ALA
308
n
312
ALA
308
A
GLY
309
n
313
GLY
309
A
TRP
310
n
314
TRP
310
A
MET
311
n
315
MET
311
A
GLY
312
n
316
GLY
312
A
LEU
313
n
317
LEU
313
A
ASP
314
n
318
ASP
314
A
CYS
315
n
319
CYS
315
A
GLY
316
n
320
GLY
316
A
PRO
317
n
321
PRO
317
A
GLU
318
n
322
GLU
318
A
SER
319
n
323
SER
319
A
SER
320
n
324
SER
320
A
LYS
321
n
325
LYS
321
A
LYS
322
n
326
LYS
322
A
TYR
323
n
327
TYR
323
A
ALA
324
n
328
ALA
324
A
GLU
325
n
329
GLU
325
A
ALA
326
n
330
ALA
326
A
VAL
327
n
331
VAL
327
A
THR
328
n
332
THR
328
A
ARG
329
n
333
ARG
329
A
ALA
330
n
334
ALA
330
A
LYS
331
n
335
LYS
331
A
GLN
332
n
336
GLN
332
A
ILE
333
n
337
ILE
333
A
VAL
334
n
338
VAL
334
A
TRP
335
n
339
TRP
335
A
ASN
336
n
340
ASN
336
A
GLY
337
n
341
GLY
337
A
PRO
338
n
342
PRO
338
A
VAL
339
n
343
VAL
339
A
GLY
340
n
344
GLY
340
A
VAL
341
n
345
VAL
341
A
PHE
342
n
346
PHE
342
A
GLU
343
n
347
GLU
343
A
TRP
344
n
348
TRP
344
A
GLU
345
n
349
GLU
345
A
ALA
346
n
350
ALA
346
A
PHE
347
n
351
PHE
347
A
ALA
348
n
352
ALA
348
A
ARG
349
n
353
ARG
349
A
GLY
350
n
354
GLY
350
A
THR
351
n
355
THR
351
A
LYS
352
n
356
LYS
352
A
ALA
353
n
357
ALA
353
A
LEU
354
n
358
LEU
354
A
MET
355
n
359
MET
355
A
ASP
356
n
360
ASP
356
A
GLU
357
n
361
GLU
357
A
VAL
358
n
362
VAL
358
A
VAL
359
n
363
VAL
359
A
LYS
360
n
364
LYS
360
A
ALA
361
n
365
ALA
361
A
THR
362
n
366
THR
362
A
SER
363
n
367
SER
363
A
ARG
364
n
368
ARG
364
A
GLY
365
n
369
GLY
365
A
CYS
366
n
370
CYS
366
A
ILE
367
n
371
ILE
367
A
THR
368
n
372
THR
368
A
ILE
369
n
373
ILE
369
A
ILE
370
n
374
ILE
370
A
GLY
371
n
375
GLY
371
A
GLY
372
n
376
GLY
372
A
n
377
373
A
n
378
374
A
n
379
375
A
n
380
376
A
n
381
377
A
n
382
378
A
n
383
379
A
n
384
380
A
n
385
381
A
n
386
382
A
n
387
383
A
n
388
384
A
GLU
385
n
389
GLU
385
A
ASP
386
n
390
ASP
386
A
LYS
387
n
391
LYS
387
A
VAL
388
n
392
VAL
388
A
SER
389
n
393
SER
389
A
HIS
390
n
394
HIS
390
A
VAL
391
n
395
VAL
391
A
SER
392
n
396
SER
392
A
THR
393
n
397
THR
393
A
GLY
394
n
398
GLY
394
A
GLY
395
n
399
GLY
395
A
GLY
396
n
400
GLY
396
A
ALA
397
n
401
ALA
397
A
SER
398
n
402
SER
398
A
LEU
399
n
403
LEU
399
A
GLU
400
n
404
GLU
400
A
LEU
401
n
405
LEU
401
A
LEU
402
n
406
LEU
402
A
GLU
403
n
407
GLU
403
A
GLY
404
n
408
GLY
404
A
LYS
405
n
409
LYS
405
A
VAL
406
n
410
VAL
406
A
LEU
407
n
411
LEU
407
A
PRO
408
n
412
PRO
408
A
GLY
409
n
413
GLY
409
A
VAL
410
n
414
VAL
410
A
ASP
411
n
415
ASP
411
A
ALA
412
n
416
ALA
412
A
LEU
413
n
417
LEU
413
A
SER
414
n
418
SER
414
A
ASN
415
n
419
ASN
415
A
ILE
416
n
420
ILE
416
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
93
A
N
LEU
97
A
O
VAL
115
A
O
VAL
119
A
O
ILE
116
A
O
ILE
120
A
N
LEU
59
A
N
LEU
63
A
O
VAL
58
A
O
VAL
62
A
N
VAL
18
A
N
VAL
22
A
N
ARG
21
A
N
ARG
25
A
O
VAL
161
A
O
VAL
165
A
N
TYR
160
A
N
TYR
164
A
O
ALA
184
A
O
ALA
188
A
N
LYS
29
A
N
LYS
33
A
O
GLN
32
A
O
GLN
36
A
N
GLY
131
A
N
GLY
135
A
O
VAL
139
A
O
VAL
143
A
O
THR
280
A
O
THR
284
A
N
MET
233
A
N
MET
237
A
O
ILE
234
A
O
ILE
238
A
N
LEU
211
A
N
LEU
215
A
N
ILE
210
A
N
ILE
214
A
O
VAL
334
A
O
VAL
338
A
N
ILE
333
A
N
ILE
337
A
O
ILE
367
A
O
ILE
371
A
N
ILE
370
A
N
ILE
374
A
O
HIS
390
A
O
HIS
394
A
O
ALA
300
A
O
ALA
304
A
N
PHE
285
A
N
PHE
289
A
N
VAL
286
A
N
VAL
290
A
O
ASP
314
A
O
ASP
318
1
A
GLY
-3
A
GLY
1
1
Y
1
A
SER
-2
A
SER
2
1
Y
1
A
HIS
-1
A
HIS
3
1
Y
1
A
MET
0
A
MET
4
1
Y
1
A
SER
1
A
SER
5
1
Y
1
A
GLY
373
A
GLY
377
1
Y
1
A
ASP
374
A
ASP
378
1
Y
1
A
THR
375
A
THR
379
1
Y
1
A
ALA
376
A
ALA
380
1
Y
1
A
THR
377
A
THR
381
1
Y
1
A
CYS
378
A
CYS
382
1
Y
1
A
CYS
379
A
CYS
383
1
Y
1
A
ALA
380
A
ALA
384
1
Y
1
A
LYS
381
A
LYS
385
1
Y
1
A
TRP
382
A
TRP
386
1
Y
1
A
ASN
383
A
ASN
387
1
Y
1
A
THR
384
A
THR
388
1
Y
1
A
A
O
O
HOH
HOH
438
584
2.19
1
A
ASN
109
-152.00
65.17
1
A
ASN
120
-37.01
121.86
1
A
ALA
164
-114.58
58.80
19.739
0.12
0.00
0.61
-0.58
0.00
0.62
0.947
0.887
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.25828
0.17557
0.17782
2.00
45.22
466
16987
2.7
68.74
5.383
0.150
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.371
0.260
0.80
0.80
1.40
1VJC
MAXIMUM LIKELIHOOD
MASK
2.00
45.22
234
3285
27
0
3024
0.017
0.022
3099
1.697
1.993
4179
6.619
5.000
401
41.472
25.690
116
17.235
15.000
569
19.349
15.000
11
0.109
0.200
478
0.008
0.021
2250
0.863
1.500
1991
1.542
2.000
3185
2.696
3.000
1108
4.430
4.500
994
0.321
0.208
2.052
15
525
20
29.24
19.2
2.00
45.22
2ZGV
16987
16987
0
0
0.048
1
11.3
2.6
0.69
2.0
2.11
2.9
1136
0.323
2.0
0.31
refinement
REFMAC
5.4.0062
data collection
ADSC
Quantum
data reduction
MOSFLM
data scaling
SCALA
phasing
MOLREP
Crystal Structure of human phosphoglycerate kinase bound to D-ADP
1
N
N
2
N
N
3
N
N
A
THR
7
A
THR
11
HELX_P
A
LEU
11
A
LEU
15
5
1
5
A
ASN
36
A
ASN
40
HELX_P
A
ASN
52
A
ASN
56
1
2
17
A
LEU
77
A
LEU
81
HELX_P
A
GLY
89
A
GLY
93
1
3
13
A
GLY
100
A
GLY
104
HELX_P
A
ASN
109
A
ASN
113
1
4
10
A
ASN
120
A
ASN
124
HELX_P
A
PHE
123
A
PHE
127
5
5
4
A
HIS
124
A
HIS
128
HELX_P
A
GLY
129
A
GLY
133
1
6
6
A
GLU
142
A
GLU
146
HELX_P
A
LEU
156
A
LEU
160
1
7
15
A
ALA
164
A
ALA
168
HELX_P
A
ALA
168
A
ALA
172
5
8
5
A
HIS
172
A
HIS
176
HELX_P
A
GLY
177
A
GLY
181
1
9
6
A
GLY
186
A
GLY
190
HELX_P
A
SER
202
A
SER
206
1
10
17
A
VAL
216
A
VAL
220
HELX_P
A
ASP
218
A
ASP
222
5
11
3
A
LYS
219
A
LYS
223
HELX_P
A
ASP
228
A
ASP
232
1
12
10
A
MET
239
A
MET
243
HELX_P
A
ASN
249
A
ASN
253
1
13
11
A
ASP
258
A
ASP
262
HELX_P
A
LYS
263
A
LYS
267
1
14
6
A
ILE
264
A
ILE
268
HELX_P
A
GLY
276
A
GLY
280
1
15
13
A
GLY
316
A
GLY
320
HELX_P
A
ALA
330
A
ALA
334
1
16
15
A
TRP
344
A
TRP
348
HELX_P
A
PHE
347
A
PHE
351
5
17
4
A
ALA
348
A
ALA
352
HELX_P
A
ARG
364
A
ARG
368
1
18
17
A
GLY
395
A
GLY
399
HELX_P
A
GLU
403
A
GLU
407
1
19
9
A
LEU
407
A
LEU
411
HELX_P
A
ALA
412
A
ALA
416
1
20
6
TRANSFERASE
PROTEIN-NUCLEOTIDE COMPLEX, Acetylation, ATP-binding, Cytoplasm, Disease mutation, Glycolysis, Hereditary hemolytic anemia, Kinase, Nucleotide-binding, Phosphoprotein, Polymorphism, Transferase
A
ARG
205
A
ARG
209
1
A
PRO
206
A
PRO
210
4.69
PGK1_HUMAN
UNP
1
1
P00558
MSLSNKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDGVPMPDKYSLEP
VAVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLENLRFHVEEEGKGKDASGNKVKAEPAKIEAFRASLSKLGDV
YVNDAFGTAHRAHSSMVGVNLPQKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGM
AFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPES
SKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASL
ELLEGKVLPGVDALSNI
1
417
2ZGV
0
416
P00558
A
1
4
420
1
expression tag
GLY
-3
2ZGV
A
P00558
UNP
1
1
expression tag
SER
-2
2ZGV
A
P00558
UNP
2
1
expression tag
HIS
-1
2ZGV
A
P00558
UNP
3
6
2
2
6
3
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
A
LEU
93
A
LEU
97
A
LEU
95
A
LEU
99
A
SER
114
A
SER
118
A
LEU
118
A
LEU
122
A
SER
56
A
SER
60
A
MET
60
A
MET
64
A
ARG
17
A
ARG
21
A
ARG
21
A
ARG
25
A
VAL
159
A
VAL
163
A
ASN
162
A
ASN
166
A
LYS
183
A
LYS
187
A
GLY
185
A
GLY
189
A
MET
28
A
MET
32
A
LYS
29
A
LYS
33
A
GLN
32
A
GLN
36
A
ILE
33
A
ILE
37
A
LYS
130
A
LYS
134
A
GLY
131
A
GLY
135
A
VAL
139
A
VAL
143
A
LYS
140
A
LYS
144
A
LYS
278
A
LYS
282
A
THR
280
A
THR
284
A
GLU
232
A
GLU
236
A
ILE
235
A
ILE
239
A
PHE
207
A
PHE
211
A
LEU
211
A
LEU
215
A
GLN
332
A
GLN
336
A
ASN
336
A
ASN
340
A
ILE
367
A
ILE
371
A
ILE
370
A
ILE
374
A
HIS
390
A
HIS
394
A
VAL
391
A
VAL
395
A
THR
297
A
THR
301
A
THR
301
A
THR
305
A
ASP
284
A
ASP
288
A
ALA
288
A
ALA
292
A
MET
311
A
MET
315
A
CYS
315
A
CYS
319
BINDING SITE FOR RESIDUE ADP A 417
A
ADP
417
Software
15
A
GLY
213
A
GLY
217
15
1_555
A
ALA
214
A
ALA
218
15
1_555
A
LYS
215
A
LYS
219
15
1_555
A
LYS
219
A
LYS
223
15
1_555
A
GLY
237
A
GLY
241
15
1_555
A
GLY
238
A
GLY
242
15
1_555
A
PHE
241
A
PHE
245
15
1_555
A
LEU
256
A
LEU
260
15
1_555
A
GLY
312
A
GLY
316
15
1_555
A
LEU
313
A
LEU
317
15
1_555
A
GLY
340
A
GLY
344
15
1_555
A
GLU
343
A
GLU
347
15
1_555
A
HOH
418
C
HOH
15
1_555
A
HOH
444
C
HOH
15
1_555
A
HOH
544
C
HOH
15
1_555
4
P 1 21 1