0.017648
0.000000
0.000000
0.000000
0.016389
0.000000
0.000000
0.000000
0.029450
0.00000
0.00000
0.00000
Tamada, T.
Kuroki, R.
Koshiba, T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
56.6
61.0
33.9
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
NA
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
O
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
R
C
N
310
N
O
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
N
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
N
360
N
O
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
C
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
To be Published
0353
Preparation and characterization of methyonyl-lysine attached human lysozyme expressed in Escherichia coli and its effective conversion to the authentic-like protein
10.2210/pdb2zij/pdb
pdb_00002zij
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
277
1
double-mirror
IMAGE PLATE
1999-04-07
RIGAKU RAXIS IIC
Ni Filter
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
14720.693
Lysozyme C
3.2.1.17
1
man
polymer
22.990
SODIUM ION
1
syn
non-polymer
18.015
water
131
nat
water
1,4-beta-N-acetylmuramidase C
no
no
KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLS
CSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV
KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLS
CSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
LYZ, LZM
9606
Homo sapiens
562
Escherichia coli
PLASMID
pUT7HL
1
1.99
38.12
VAPOR DIFFUSION, HANGING DROP
6.0
2.5M sodium chloride, 0.03M phosphate, pH6.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2009-01-06
1
1
2011-07-13
1
2
2023-11-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr2_auth_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Secreted protein from Pichia pastoris
Secreted protein from Urine
PDBJ
Y
PDBJ
2008-02-18
REL
REL
NA
SODIUM ION
HOH
water
1I1Z
PDB ENTRY 1I1Z
PDB
experimental model
NA
1
2
NA
NA
131
A
HOH
1
3
HOH
HOH
132
A
HOH
2
3
HOH
HOH
133
A
HOH
3
3
HOH
HOH
134
A
HOH
4
3
HOH
HOH
135
A
HOH
5
3
HOH
HOH
136
A
HOH
6
3
HOH
HOH
137
A
HOH
7
3
HOH
HOH
138
A
HOH
8
3
HOH
HOH
139
A
HOH
9
3
HOH
HOH
140
A
HOH
10
3
HOH
HOH
141
A
HOH
11
3
HOH
HOH
142
A
HOH
12
3
HOH
HOH
143
A
HOH
13
3
HOH
HOH
144
A
HOH
14
3
HOH
HOH
145
A
HOH
15
3
HOH
HOH
146
A
HOH
16
3
HOH
HOH
147
A
HOH
17
3
HOH
HOH
148
A
HOH
18
3
HOH
HOH
149
A
HOH
19
3
HOH
HOH
150
A
HOH
20
3
HOH
HOH
151
A
HOH
21
3
HOH
HOH
152
A
HOH
22
3
HOH
HOH
153
A
HOH
23
3
HOH
HOH
154
A
HOH
24
3
HOH
HOH
155
A
HOH
25
3
HOH
HOH
156
A
HOH
26
3
HOH
HOH
157
A
HOH
27
3
HOH
HOH
158
A
HOH
28
3
HOH
HOH
159
A
HOH
29
3
HOH
HOH
160
A
HOH
30
3
HOH
HOH
161
A
HOH
31
3
HOH
HOH
162
A
HOH
32
3
HOH
HOH
163
A
HOH
33
3
HOH
HOH
164
A
HOH
34
3
HOH
HOH
165
A
HOH
35
3
HOH
HOH
166
A
HOH
36
3
HOH
HOH
167
A
HOH
37
3
HOH
HOH
168
A
HOH
38
3
HOH
HOH
169
A
HOH
39
3
HOH
HOH
170
A
HOH
40
3
HOH
HOH
171
A
HOH
41
3
HOH
HOH
172
A
HOH
42
3
HOH
HOH
173
A
HOH
43
3
HOH
HOH
174
A
HOH
44
3
HOH
HOH
175
A
HOH
45
3
HOH
HOH
176
A
HOH
46
3
HOH
HOH
177
A
HOH
47
3
HOH
HOH
178
A
HOH
48
3
HOH
HOH
179
A
HOH
49
3
HOH
HOH
180
A
HOH
50
3
HOH
HOH
181
A
HOH
51
3
HOH
HOH
182
A
HOH
52
3
HOH
HOH
183
A
HOH
53
3
HOH
HOH
184
A
HOH
54
3
HOH
HOH
185
A
HOH
55
3
HOH
HOH
186
A
HOH
56
3
HOH
HOH
187
A
HOH
57
3
HOH
HOH
188
A
HOH
58
3
HOH
HOH
189
A
HOH
59
3
HOH
HOH
190
A
HOH
60
3
HOH
HOH
191
A
HOH
61
3
HOH
HOH
192
A
HOH
62
3
HOH
HOH
193
A
HOH
63
3
HOH
HOH
194
A
HOH
64
3
HOH
HOH
195
A
HOH
65
3
HOH
HOH
196
A
HOH
66
3
HOH
HOH
197
A
HOH
67
3
HOH
HOH
198
A
HOH
68
3
HOH
HOH
199
A
HOH
69
3
HOH
HOH
200
A
HOH
70
3
HOH
HOH
201
A
HOH
71
3
HOH
HOH
202
A
HOH
72
3
HOH
HOH
203
A
HOH
73
3
HOH
HOH
204
A
HOH
74
3
HOH
HOH
205
A
HOH
75
3
HOH
HOH
206
A
HOH
76
3
HOH
HOH
207
A
HOH
77
3
HOH
HOH
208
A
HOH
78
3
HOH
HOH
209
A
HOH
79
3
HOH
HOH
210
A
HOH
80
3
HOH
HOH
211
A
HOH
81
3
HOH
HOH
212
A
HOH
82
3
HOH
HOH
213
A
HOH
83
3
HOH
HOH
214
A
HOH
84
3
HOH
HOH
215
A
HOH
85
3
HOH
HOH
216
A
HOH
86
3
HOH
HOH
217
A
HOH
87
3
HOH
HOH
218
A
HOH
88
3
HOH
HOH
219
A
HOH
89
3
HOH
HOH
220
A
HOH
90
3
HOH
HOH
221
A
HOH
91
3
HOH
HOH
222
A
HOH
92
3
HOH
HOH
223
A
HOH
93
3
HOH
HOH
224
A
HOH
94
3
HOH
HOH
225
A
HOH
95
3
HOH
HOH
226
A
HOH
96
3
HOH
HOH
227
A
HOH
97
3
HOH
HOH
228
A
HOH
98
3
HOH
HOH
229
A
HOH
99
3
HOH
HOH
230
A
HOH
100
3
HOH
HOH
231
A
HOH
101
3
HOH
HOH
232
A
HOH
102
3
HOH
HOH
233
A
HOH
103
3
HOH
HOH
234
A
HOH
104
3
HOH
HOH
235
A
HOH
105
3
HOH
HOH
236
A
HOH
106
3
HOH
HOH
237
A
HOH
107
3
HOH
HOH
238
A
HOH
108
3
HOH
HOH
239
A
HOH
109
3
HOH
HOH
240
A
HOH
110
3
HOH
HOH
241
A
HOH
111
3
HOH
HOH
242
A
HOH
112
3
HOH
HOH
243
A
HOH
113
3
HOH
HOH
244
A
HOH
114
3
HOH
HOH
245
A
HOH
115
3
HOH
HOH
246
A
HOH
116
3
HOH
HOH
247
A
HOH
117
3
HOH
HOH
248
A
HOH
118
3
HOH
HOH
249
A
HOH
119
3
HOH
HOH
250
A
HOH
120
3
HOH
HOH
251
A
HOH
121
3
HOH
HOH
252
A
HOH
122
3
HOH
HOH
253
A
HOH
123
3
HOH
HOH
254
A
HOH
124
3
HOH
HOH
255
A
HOH
125
3
HOH
HOH
256
A
HOH
126
3
HOH
HOH
257
A
HOH
127
3
HOH
HOH
258
A
HOH
128
3
HOH
HOH
259
A
HOH
129
3
HOH
HOH
260
A
HOH
130
3
HOH
HOH
261
A
HOH
131
3
HOH
HOH
262
A
LYS
1
n
1
LYS
1
A
VAL
2
n
2
VAL
2
A
PHE
3
n
3
PHE
3
A
GLU
4
n
4
GLU
4
A
ARG
5
n
5
ARG
5
A
CYS
6
n
6
CYS
6
A
GLU
7
n
7
GLU
7
A
LEU
8
n
8
LEU
8
A
ALA
9
n
9
ALA
9
A
ARG
10
n
10
ARG
10
A
THR
11
n
11
THR
11
A
LEU
12
n
12
LEU
12
A
LYS
13
n
13
LYS
13
A
ARG
14
n
14
ARG
14
A
LEU
15
n
15
LEU
15
A
GLY
16
n
16
GLY
16
A
MET
17
n
17
MET
17
A
ASP
18
n
18
ASP
18
A
GLY
19
n
19
GLY
19
A
TYR
20
n
20
TYR
20
A
ARG
21
n
21
ARG
21
A
GLY
22
n
22
GLY
22
A
ILE
23
n
23
ILE
23
A
SER
24
n
24
SER
24
A
LEU
25
n
25
LEU
25
A
ALA
26
n
26
ALA
26
A
ASN
27
n
27
ASN
27
A
TRP
28
n
28
TRP
28
A
MET
29
n
29
MET
29
A
CYS
30
n
30
CYS
30
A
LEU
31
n
31
LEU
31
A
ALA
32
n
32
ALA
32
A
LYS
33
n
33
LYS
33
A
TRP
34
n
34
TRP
34
A
GLU
35
n
35
GLU
35
A
SER
36
n
36
SER
36
A
GLY
37
n
37
GLY
37
A
TYR
38
n
38
TYR
38
A
ASN
39
n
39
ASN
39
A
THR
40
n
40
THR
40
A
ARG
41
n
41
ARG
41
A
ALA
42
n
42
ALA
42
A
THR
43
n
43
THR
43
A
ASN
44
n
44
ASN
44
A
TYR
45
n
45
TYR
45
A
ASN
46
n
46
ASN
46
A
ALA
47
n
47
ALA
47
A
GLY
48
n
48
GLY
48
A
ASP
49
n
49
ASP
49
A
ARG
50
n
50
ARG
50
A
SER
51
n
51
SER
51
A
THR
52
n
52
THR
52
A
ASP
53
n
53
ASP
53
A
TYR
54
n
54
TYR
54
A
GLY
55
n
55
GLY
55
A
ILE
56
n
56
ILE
56
A
PHE
57
n
57
PHE
57
A
GLN
58
n
58
GLN
58
A
ILE
59
n
59
ILE
59
A
ASN
60
n
60
ASN
60
A
SER
61
n
61
SER
61
A
ARG
62
n
62
ARG
62
A
TYR
63
n
63
TYR
63
A
TRP
64
n
64
TRP
64
A
CYS
65
n
65
CYS
65
A
ASN
66
n
66
ASN
66
A
ASP
67
n
67
ASP
67
A
GLY
68
n
68
GLY
68
A
LYS
69
n
69
LYS
69
A
THR
70
n
70
THR
70
A
PRO
71
n
71
PRO
71
A
GLY
72
n
72
GLY
72
A
ALA
73
n
73
ALA
73
A
VAL
74
n
74
VAL
74
A
ASN
75
n
75
ASN
75
A
ALA
76
n
76
ALA
76
A
CYS
77
n
77
CYS
77
A
HIS
78
n
78
HIS
78
A
LEU
79
n
79
LEU
79
A
SER
80
n
80
SER
80
A
CYS
81
n
81
CYS
81
A
SER
82
n
82
SER
82
A
ALA
83
n
83
ALA
83
A
LEU
84
n
84
LEU
84
A
LEU
85
n
85
LEU
85
A
GLN
86
n
86
GLN
86
A
ASP
87
n
87
ASP
87
A
ASN
88
n
88
ASN
88
A
ILE
89
n
89
ILE
89
A
ALA
90
n
90
ALA
90
A
ASP
91
n
91
ASP
91
A
ALA
92
n
92
ALA
92
A
VAL
93
n
93
VAL
93
A
ALA
94
n
94
ALA
94
A
CYS
95
n
95
CYS
95
A
ALA
96
n
96
ALA
96
A
LYS
97
n
97
LYS
97
A
ARG
98
n
98
ARG
98
A
VAL
99
n
99
VAL
99
A
VAL
100
n
100
VAL
100
A
ARG
101
n
101
ARG
101
A
ASP
102
n
102
ASP
102
A
PRO
103
n
103
PRO
103
A
GLN
104
n
104
GLN
104
A
GLY
105
n
105
GLY
105
A
ILE
106
n
106
ILE
106
A
ARG
107
n
107
ARG
107
A
ALA
108
n
108
ALA
108
A
TRP
109
n
109
TRP
109
A
VAL
110
n
110
VAL
110
A
ALA
111
n
111
ALA
111
A
TRP
112
n
112
TRP
112
A
ARG
113
n
113
ARG
113
A
ASN
114
n
114
ASN
114
A
ARG
115
n
115
ARG
115
A
CYS
116
n
116
CYS
116
A
GLN
117
n
117
GLN
117
A
ASN
118
n
118
ASN
118
A
ARG
119
n
119
ARG
119
A
ASP
120
n
120
ASP
120
A
VAL
121
n
121
VAL
121
A
ARG
122
n
122
ARG
122
A
GLN
123
n
123
GLN
123
A
TYR
124
n
124
TYR
124
A
VAL
125
n
125
VAL
125
A
GLN
126
n
126
GLN
126
A
GLY
127
n
127
GLY
127
A
CYS
128
n
128
CYS
128
A
GLY
129
n
129
GLY
129
A
VAL
130
n
130
VAL
130
A
author_and_software_defined_assembly
PISA
1
monomeric
A
SER
61
A
O
SER
61
1_555
A
NA
131
B
NA
NA
1_555
A
CYS
65
A
O
CYS
65
1_555
83.0
A
SER
61
A
O
SER
61
1_555
A
NA
131
B
NA
NA
1_555
A
VAL
74
A
O
VAL
74
1_555
98.8
A
CYS
65
A
O
CYS
65
1_555
A
NA
131
B
NA
NA
1_555
A
VAL
74
A
O
VAL
74
1_555
101.0
A
SER
61
A
O
SER
61
1_555
A
NA
131
B
NA
NA
1_555
A
HOH
147
C
O
HOH
1_555
153.8
A
CYS
65
A
O
CYS
65
1_555
A
NA
131
B
NA
NA
1_555
A
HOH
147
C
O
HOH
1_555
120.0
A
VAL
74
A
O
VAL
74
1_555
A
NA
131
B
NA
NA
1_555
A
HOH
147
C
O
HOH
1_555
89.3
A
SER
61
A
O
SER
61
1_555
A
NA
131
B
NA
NA
1_555
A
HOH
153
C
O
HOH
1_555
83.7
A
CYS
65
A
O
CYS
65
1_555
A
NA
131
B
NA
NA
1_555
A
HOH
153
C
O
HOH
1_555
93.6
A
VAL
74
A
O
VAL
74
1_555
A
NA
131
B
NA
NA
1_555
A
HOH
153
C
O
HOH
1_555
165.4
A
HOH
147
C
O
HOH
1_555
A
NA
131
B
NA
NA
1_555
A
HOH
153
C
O
HOH
1_555
82.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ASN
44
A
N
ASN
44
A
O
ASP
53
A
O
ASP
53
A
N
TYR
54
A
N
TYR
54
A
O
ILE
59
A
O
ILE
59
1
6.03
0.90
118.30
124.33
A
A
A
CB
CG
OD2
ASP
ASP
ASP
18
18
18
N
1
5.70
0.90
118.30
124.00
A
A
A
CB
CG
OD2
ASP
ASP
ASP
102
102
102
N
1
A
SER
36
-142.75
-10.73
13.927
-0.12
0.00
0.00
-0.92
0.00
1.04
0.948
0.901
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.23541
0.16746
0.17082
1.90
41.5
410
8185
4.8
88.14
4.233
0.122
RANDOM
1
Isotropic
THROUGHOUT
MOLECULAR REPLACEMENT
0.193
0.179
0.80
0.80
1.20
PDB ENTRY 1I1Z
MAXIMUM LIKELIHOOD
MASK
1.90
41.5
131
1161
1
0
1029
0.014
0.021
1053
1.522
1.911
1426
6.436
5.000
129
34.976
22.364
55
13.376
15.000
172
13.213
15.000
14
0.108
0.200
146
0.006
0.020
824
0.222
0.200
435
0.299
0.200
726
0.177
0.200
78
0.103
0.200
4
0.188
0.200
30
0.223
0.200
6
0.776
1.500
641
1.362
2.000
1017
2.539
3.000
443
4.220
4.500
409
0.328
0.235
1.949
26
484
20
72.34
1.9
41.5
2ZIJ
20728
8599
0.078
1
88.1
refinement
REFMAC
5.0
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
N
Crystal Structure of Human Lysozyme Expressed in E. coli.
1
N
N
2
N
N
3
N
N
A
GLU
4
A
GLU
4
HELX_P
A
LEU
15
A
LEU
15
1
1
12
A
GLY
19
A
GLY
19
HELX_P
A
ILE
23
A
ILE
23
5
2
5
A
SER
24
A
SER
24
HELX_P
A
GLY
37
A
GLY
37
1
3
14
A
SER
80
A
SER
80
HELX_P
A
GLN
86
A
GLN
86
5
4
7
A
ILE
89
A
ILE
89
HELX_P
A
ARG
101
A
ARG
101
1
5
13
A
GLN
104
A
GLN
104
HELX_P
A
ALA
108
A
ALA
108
5
6
5
A
TRP
109
A
TRP
109
HELX_P
A
CYS
116
A
CYS
116
1
7
8
A
VAL
121
A
VAL
121
HELX_P
A
VAL
125
A
VAL
125
5
8
5
disulf
2.011
A
CYS
6
A
SG
CYS
6
1_555
A
CYS
128
A
SG
CYS
128
1_555
disulf
2.018
A
CYS
30
A
SG
CYS
30
1_555
A
CYS
116
A
SG
CYS
116
1_555
disulf
2.008
A
CYS
65
A
SG
CYS
65
1_555
A
CYS
81
A
SG
CYS
81
1_555
disulf
2.022
A
CYS
77
A
SG
CYS
77
1_555
A
CYS
95
A
SG
CYS
95
1_555
metalc
2.358
A
SER
61
A
O
SER
61
1_555
A
NA
131
B
NA
NA
1_555
metalc
2.249
A
CYS
65
A
O
CYS
65
1_555
A
NA
131
B
NA
NA
1_555
metalc
2.425
A
VAL
74
A
O
VAL
74
1_555
A
NA
131
B
NA
NA
1_555
metalc
2.299
A
NA
131
B
NA
NA
1_555
A
HOH
147
C
O
HOH
1_555
metalc
2.370
A
NA
131
B
NA
NA
1_555
A
HOH
153
C
O
HOH
1_555
HYDROLASE
HYDROLASE, Refolded Protein, Amyloid, Antimicrobial, Bacteriolytic enzyme, Disease mutation, Glycosidase, Polymorphism
LYSC_HUMAN
UNP
1
19
P61626
KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLS
CSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV
19
148
2ZIJ
1
130
P61626
A
1
1
130
3
anti-parallel
anti-parallel
A
THR
43
A
THR
43
A
TYR
45
A
TYR
45
A
THR
52
A
THR
52
A
TYR
54
A
TYR
54
A
ILE
59
A
ILE
59
A
ASN
60
A
ASN
60
BINDING SITE FOR RESIDUE NA A 131
A
NA
131
Software
6
A
SER
61
A
SER
61
6
1_555
A
CYS
65
A
CYS
65
6
1_555
A
ASN
66
A
ASN
66
6
1_555
A
ALA
73
A
ALA
73
6
1_555
A
HOH
147
C
HOH
6
1_555
A
HOH
153
C
HOH
6
1_555
19
P 21 21 21