0.013697
0.000000
0.000000
0.000000
0.013697
0.000000
0.000000
0.000000
0.006617
0.00000
0.00000
0.00000
Zhao, H.
Volkov, A.
Veldore, V.H.
Varughese, K.I.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
32
90.000
90.000
90.000
73.010
73.010
151.120
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Microbiology
0026-2617
156
385
391
10.1099/mic.0.033548-0
19926656
Crystal structure of the transcriptional repressor PagR of Bacillus anthracis
2010
100
1
Mirrors
CCD
2005-10-24
ADSC QUANTUM 4
Double flat crystal, Si(111)
MAD
M
x-ray
1
0.97969
1.0
1.00344
1.0
1.037
1.0
8.3.1
ALS
0.97969, 1.00344, 1.037
SYNCHROTRON
ALS BEAMLINE 8.3.1
11809.277
Transcriptional repressor pagR
4
man
polymer
18.015
water
79
nat
water
Protective antigen repressor
no
yes
(MSE)TVFVDHKIEY(MSE)SLEDDAELLKT(MSE)AHP(MSE)RLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCK
(MSE)RGKVLKRNRQGLEIYYSINNPKVEGIIKLLNPIQ
MTVFVDHKIEYMSLEDDAELLKTMAHPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGKVLKRNRQGLEIY
YSINNPKVEGIIKLLNPIQ
A,B,C,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
pagR, tcrA
1392
Bacillus anthracis
562
Escherichia coli
BL21(DE3)
plasmid
pET28a
1
2.14
42.53
5.6
0.2M Na Acetate, 1.6M NaH2PO4, 0.4M K2HPO4, pH5.6, hanging drop, temperature 298K
298
software
repository
Initial release
Version format compliance
Database references
Refinement description
1
0
2009-04-07
1
1
2011-07-13
1
2
2011-11-30
1
3
2017-10-11
PDBJ
Y
PDBJ
2008-04-01
REL
REL
HOH
water
WAT
2
2
HOH
HOH
100
A
WAT
3
2
HOH
HOH
101
A
WAT
4
2
HOH
HOH
102
A
WAT
7
2
HOH
HOH
103
A
WAT
8
2
HOH
HOH
104
A
WAT
9
2
HOH
HOH
105
A
WAT
10
2
HOH
HOH
106
A
WAT
11
2
HOH
HOH
107
A
WAT
13
2
HOH
HOH
108
A
WAT
14
2
HOH
HOH
109
A
WAT
19
2
HOH
HOH
110
A
WAT
21
2
HOH
HOH
111
A
WAT
22
2
HOH
HOH
112
A
WAT
23
2
HOH
HOH
113
A
WAT
28
2
HOH
HOH
114
A
WAT
29
2
HOH
HOH
115
A
WAT
33
2
HOH
HOH
116
A
WAT
35
2
HOH
HOH
117
A
WAT
42
2
HOH
HOH
118
A
WAT
44
2
HOH
HOH
119
A
WAT
46
2
HOH
HOH
120
A
WAT
48
2
HOH
HOH
121
A
WAT
53
2
HOH
HOH
122
A
WAT
66
2
HOH
HOH
123
A
WAT
67
2
HOH
HOH
124
A
WAT
69
2
HOH
HOH
125
A
WAT
70
2
HOH
HOH
126
A
WAT
72
2
HOH
HOH
127
A
WAT
75
2
HOH
HOH
128
A
WAT
74
2
HOH
HOH
129
A
WAT
30
2
HOH
HOH
130
A
WAT
1
2
HOH
HOH
100
B
WAT
12
2
HOH
HOH
101
B
WAT
15
2
HOH
HOH
102
B
WAT
16
2
HOH
HOH
103
B
WAT
17
2
HOH
HOH
104
B
WAT
24
2
HOH
HOH
105
B
WAT
27
2
HOH
HOH
106
B
WAT
31
2
HOH
HOH
107
B
WAT
39
2
HOH
HOH
108
B
WAT
40
2
HOH
HOH
109
B
WAT
41
2
HOH
HOH
110
B
WAT
45
2
HOH
HOH
111
B
WAT
49
2
HOH
HOH
112
B
WAT
50
2
HOH
HOH
113
B
WAT
56
2
HOH
HOH
114
B
WAT
57
2
HOH
HOH
115
B
WAT
60
2
HOH
HOH
116
B
WAT
62
2
HOH
HOH
117
B
WAT
63
2
HOH
HOH
118
B
WAT
68
2
HOH
HOH
119
B
WAT
71
2
HOH
HOH
120
B
WAT
78
2
HOH
HOH
122
B
WAT
79
2
HOH
HOH
123
B
WAT
5
2
HOH
HOH
100
C
WAT
6
2
HOH
HOH
101
C
WAT
18
2
HOH
HOH
102
C
WAT
20
2
HOH
HOH
103
C
WAT
32
2
HOH
HOH
105
C
WAT
36
2
HOH
HOH
106
C
WAT
37
2
HOH
HOH
107
C
WAT
47
2
HOH
HOH
108
C
WAT
52
2
HOH
HOH
109
C
WAT
55
2
HOH
HOH
110
C
WAT
58
2
HOH
HOH
111
C
WAT
59
2
HOH
HOH
112
C
WAT
77
2
HOH
HOH
113
C
WAT
25
2
HOH
HOH
100
D
WAT
26
2
HOH
HOH
101
D
WAT
34
2
HOH
HOH
102
D
WAT
38
2
HOH
HOH
103
D
WAT
43
2
HOH
HOH
104
D
WAT
51
2
HOH
HOH
105
D
WAT
54
2
HOH
HOH
106
D
WAT
61
2
HOH
HOH
107
D
WAT
64
2
HOH
HOH
108
D
WAT
65
2
HOH
HOH
109
D
WAT
73
2
HOH
HOH
110
D
WAT
76
2
HOH
HOH
111
D
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
ALA
11
n
11
TYR
11
A
MSE
12
n
12
MSE
12
A
SER
13
n
13
SER
13
A
LEU
14
n
14
LEU
14
A
GLU
15
n
15
GLU
15
A
ASP
16
n
16
ASP
16
A
ASP
17
n
17
ASP
17
A
ALA
18
n
18
ALA
18
A
GLU
19
n
19
GLU
19
A
LEU
20
n
20
LEU
20
A
LEU
21
n
21
LEU
21
A
LYS
22
n
22
LYS
22
A
THR
23
n
23
THR
23
A
MSE
24
n
24
MSE
24
A
ALA
25
n
25
ALA
25
A
HIS
26
n
26
HIS
26
A
PRO
27
n
27
PRO
27
A
MSE
28
n
28
MSE
28
A
ARG
29
n
29
ARG
29
A
LEU
30
n
30
LEU
30
A
LYS
31
n
31
LYS
31
A
ILE
32
n
32
ILE
32
A
VAL
33
n
33
VAL
33
A
ASN
34
n
34
ASN
34
A
GLU
35
n
35
GLU
35
A
LEU
36
n
36
LEU
36
A
TYR
37
n
37
TYR
37
A
LYS
38
n
38
LYS
38
A
HIS
39
n
39
HIS
39
A
LYS
40
n
40
LYS
40
A
ALA
41
n
41
ALA
41
A
LEU
42
n
42
LEU
42
A
ASN
43
n
43
ASN
43
A
VAL
44
n
44
VAL
44
A
THR
45
n
45
THR
45
A
GLN
46
n
46
GLN
46
A
ILE
47
n
47
ILE
47
A
ILE
48
n
48
ILE
48
A
GLN
49
n
49
GLN
49
A
ILE
50
n
50
ILE
50
A
LEU
51
n
51
LEU
51
A
LYS
52
n
52
LYS
52
A
LEU
53
n
53
LEU
53
A
PRO
54
n
54
PRO
54
A
GLN
55
n
55
GLN
55
A
SER
56
n
56
SER
56
A
THR
57
n
57
THR
57
A
VAL
58
n
58
VAL
58
A
SER
59
n
59
SER
59
A
GLN
60
n
60
GLN
60
A
HIS
61
n
61
HIS
61
A
LEU
62
n
62
LEU
62
A
CYS
63
n
63
CYS
63
A
LYS
64
n
64
LYS
64
A
MSE
65
n
65
MSE
65
A
ARG
66
n
66
ARG
66
A
GLY
67
n
67
GLY
67
A
LYS
68
n
68
LYS
68
A
VAL
69
n
69
VAL
69
A
LEU
70
n
70
LEU
70
A
LYS
71
n
71
LYS
71
A
ARG
72
n
72
ARG
72
A
ASN
73
n
73
ASN
73
A
ARG
74
n
74
ARG
74
A
GLN
75
n
75
GLN
75
A
GLY
76
n
76
GLY
76
A
LEU
77
n
77
LEU
77
A
GLU
78
n
78
GLU
78
A
ILE
79
n
79
ILE
79
A
TYR
80
n
80
TYR
80
A
TYR
81
n
81
TYR
81
A
SER
82
n
82
SER
82
A
ILE
83
n
83
ILE
83
A
ASN
84
n
84
ASN
84
A
ASN
85
n
85
ASN
85
A
PRO
86
n
86
PRO
86
A
LYS
87
n
87
LYS
87
A
VAL
88
n
88
VAL
88
A
GLU
89
n
89
GLU
89
A
GLY
90
n
90
GLY
90
A
ILE
91
n
91
ILE
91
A
ILE
92
n
92
ILE
92
A
LYS
93
n
93
LYS
93
A
LEU
94
n
94
LEU
94
A
LEU
95
n
95
LEU
95
A
ASN
96
n
96
ASN
96
A
n
97
97
A
n
98
98
A
n
99
99
A
n
1
1
B
n
2
2
B
n
3
3
B
n
4
4
B
n
5
5
B
n
6
6
B
n
7
7
B
n
8
8
B
n
9
9
B
n
10
10
B
TYR
11
n
11
TYR
11
B
MSE
12
n
12
MSE
12
B
SER
13
n
13
SER
13
B
LEU
14
n
14
LEU
14
B
GLU
15
n
15
GLU
15
B
ASP
16
n
16
ASP
16
B
ASP
17
n
17
ASP
17
B
ALA
18
n
18
ALA
18
B
GLU
19
n
19
GLU
19
B
LEU
20
n
20
LEU
20
B
LEU
21
n
21
LEU
21
B
LYS
22
n
22
LYS
22
B
THR
23
n
23
THR
23
B
MSE
24
n
24
MSE
24
B
ALA
25
n
25
ALA
25
B
HIS
26
n
26
HIS
26
B
PRO
27
n
27
PRO
27
B
MSE
28
n
28
MSE
28
B
ARG
29
n
29
ARG
29
B
LEU
30
n
30
LEU
30
B
LYS
31
n
31
LYS
31
B
ILE
32
n
32
ILE
32
B
VAL
33
n
33
VAL
33
B
ASN
34
n
34
ASN
34
B
GLU
35
n
35
GLU
35
B
LEU
36
n
36
LEU
36
B
TYR
37
n
37
TYR
37
B
LYS
38
n
38
LYS
38
B
HIS
39
n
39
HIS
39
B
LYS
40
n
40
LYS
40
B
ALA
41
n
41
ALA
41
B
LEU
42
n
42
LEU
42
B
ASN
43
n
43
ASN
43
B
VAL
44
n
44
VAL
44
B
THR
45
n
45
THR
45
B
GLN
46
n
46
GLN
46
B
ILE
47
n
47
ILE
47
B
ILE
48
n
48
ILE
48
B
GLN
49
n
49
GLN
49
B
ILE
50
n
50
ILE
50
B
LEU
51
n
51
LEU
51
B
LYS
52
n
52
LYS
52
B
LEU
53
n
53
LEU
53
B
PRO
54
n
54
PRO
54
B
GLN
55
n
55
GLN
55
B
SER
56
n
56
SER
56
B
THR
57
n
57
THR
57
B
VAL
58
n
58
VAL
58
B
SER
59
n
59
SER
59
B
GLN
60
n
60
GLN
60
B
HIS
61
n
61
HIS
61
B
LEU
62
n
62
LEU
62
B
CYS
63
n
63
CYS
63
B
LYS
64
n
64
LYS
64
B
MSE
65
n
65
MSE
65
B
ARG
66
n
66
ARG
66
B
GLY
67
n
67
GLY
67
B
LYS
68
n
68
LYS
68
B
VAL
69
n
69
VAL
69
B
LEU
70
n
70
LEU
70
B
LYS
71
n
71
LYS
71
B
ARG
72
n
72
ARG
72
B
ASN
73
n
73
ASN
73
B
ARG
74
n
74
ARG
74
B
GLN
75
n
75
GLN
75
B
GLY
76
n
76
GLY
76
B
LEU
77
n
77
LEU
77
B
GLU
78
n
78
GLU
78
B
ILE
79
n
79
ILE
79
B
TYR
80
n
80
TYR
80
B
TYR
81
n
81
TYR
81
B
SER
82
n
82
SER
82
B
ILE
83
n
83
ILE
83
B
ASN
84
n
84
ASN
84
B
ASN
85
n
85
ASN
85
B
PRO
86
n
86
PRO
86
B
LYS
87
n
87
LYS
87
B
VAL
88
n
88
VAL
88
B
GLU
89
n
89
GLU
89
B
GLY
90
n
90
GLY
90
B
ILE
91
n
91
ILE
91
B
ILE
92
n
92
ILE
92
B
LYS
93
n
93
LYS
93
B
LEU
94
n
94
LEU
94
B
LEU
95
n
95
LEU
95
B
ASN
96
n
96
ASN
96
B
n
97
97
B
n
98
98
B
n
99
99
B
n
1
1
C
n
2
2
C
n
3
3
C
n
4
4
C
n
5
5
C
n
6
6
C
n
7
7
C
n
8
8
C
n
9
9
C
GLU
10
n
10
GLU
10
C
TYR
11
n
11
TYR
11
C
MSE
12
n
12
MSE
12
C
SER
13
n
13
SER
13
C
LEU
14
n
14
LEU
14
C
GLU
15
n
15
GLU
15
C
ASP
16
n
16
ASP
16
C
ASP
17
n
17
ASP
17
C
ALA
18
n
18
ALA
18
C
GLU
19
n
19
GLU
19
C
LEU
20
n
20
LEU
20
C
LEU
21
n
21
LEU
21
C
LYS
22
n
22
LYS
22
C
THR
23
n
23
THR
23
C
MSE
24
n
24
MSE
24
C
ALA
25
n
25
ALA
25
C
HIS
26
n
26
HIS
26
C
PRO
27
n
27
PRO
27
C
MSE
28
n
28
MSE
28
C
ARG
29
n
29
ARG
29
C
LEU
30
n
30
LEU
30
C
LYS
31
n
31
LYS
31
C
ILE
32
n
32
ILE
32
C
VAL
33
n
33
VAL
33
C
ASN
34
n
34
ASN
34
C
GLU
35
n
35
GLU
35
C
LEU
36
n
36
LEU
36
C
TYR
37
n
37
TYR
37
C
LYS
38
n
38
LYS
38
C
HIS
39
n
39
HIS
39
C
LYS
40
n
40
LYS
40
C
ALA
41
n
41
ALA
41
C
LEU
42
n
42
LEU
42
C
ASN
43
n
43
ASN
43
C
VAL
44
n
44
VAL
44
C
THR
45
n
45
THR
45
C
GLN
46
n
46
GLN
46
C
ILE
47
n
47
ILE
47
C
ILE
48
n
48
ILE
48
C
GLN
49
n
49
GLN
49
C
ILE
50
n
50
ILE
50
C
LEU
51
n
51
LEU
51
C
LYS
52
n
52
LYS
52
C
LEU
53
n
53
LEU
53
C
PRO
54
n
54
PRO
54
C
GLN
55
n
55
GLN
55
C
SER
56
n
56
SER
56
C
THR
57
n
57
THR
57
C
VAL
58
n
58
VAL
58
C
SER
59
n
59
SER
59
C
GLN
60
n
60
GLN
60
C
HIS
61
n
61
HIS
61
C
LEU
62
n
62
LEU
62
C
CYS
63
n
63
CYS
63
C
LYS
64
n
64
LYS
64
C
MSE
65
n
65
MSE
65
C
ARG
66
n
66
ARG
66
C
GLY
67
n
67
GLY
67
C
LYS
68
n
68
LYS
68
C
VAL
69
n
69
VAL
69
C
LEU
70
n
70
LEU
70
C
LYS
71
n
71
LYS
71
C
ARG
72
n
72
ARG
72
C
ASN
73
n
73
ASN
73
C
ARG
74
n
74
ARG
74
C
GLN
75
n
75
GLN
75
C
GLY
76
n
76
GLY
76
C
LEU
77
n
77
LEU
77
C
GLU
78
n
78
GLU
78
C
ILE
79
n
79
ILE
79
C
TYR
80
n
80
TYR
80
C
TYR
81
n
81
TYR
81
C
SER
82
n
82
SER
82
C
ILE
83
n
83
ILE
83
C
ASN
84
n
84
ASN
84
C
ASN
85
n
85
ASN
85
C
PRO
86
n
86
PRO
86
C
LYS
87
n
87
LYS
87
C
VAL
88
n
88
VAL
88
C
GLU
89
n
89
GLU
89
C
GLY
90
n
90
GLY
90
C
ILE
91
n
91
ILE
91
C
ILE
92
n
92
ILE
92
C
LYS
93
n
93
LYS
93
C
LEU
94
n
94
LEU
94
C
LEU
95
n
95
LEU
95
C
ALA
96
n
96
ASN
96
C
n
97
97
C
n
98
98
C
n
99
99
C
n
1
1
D
n
2
2
D
n
3
3
D
n
4
4
D
n
5
5
D
n
6
6
D
n
7
7
D
n
8
8
D
n
9
9
D
GLU
10
n
10
GLU
10
D
TYR
11
n
11
TYR
11
D
MSE
12
n
12
MSE
12
D
SER
13
n
13
SER
13
D
LEU
14
n
14
LEU
14
D
GLU
15
n
15
GLU
15
D
ASP
16
n
16
ASP
16
D
ASP
17
n
17
ASP
17
D
ALA
18
n
18
ALA
18
D
GLU
19
n
19
GLU
19
D
LEU
20
n
20
LEU
20
D
LEU
21
n
21
LEU
21
D
LYS
22
n
22
LYS
22
D
THR
23
n
23
THR
23
D
MSE
24
n
24
MSE
24
D
ALA
25
n
25
ALA
25
D
HIS
26
n
26
HIS
26
D
PRO
27
n
27
PRO
27
D
MSE
28
n
28
MSE
28
D
ARG
29
n
29
ARG
29
D
LEU
30
n
30
LEU
30
D
LYS
31
n
31
LYS
31
D
ILE
32
n
32
ILE
32
D
VAL
33
n
33
VAL
33
D
ASN
34
n
34
ASN
34
D
GLU
35
n
35
GLU
35
D
LEU
36
n
36
LEU
36
D
TYR
37
n
37
TYR
37
D
LYS
38
n
38
LYS
38
D
HIS
39
n
39
HIS
39
D
LYS
40
n
40
LYS
40
D
ALA
41
n
41
ALA
41
D
LEU
42
n
42
LEU
42
D
ASN
43
n
43
ASN
43
D
VAL
44
n
44
VAL
44
D
THR
45
n
45
THR
45
D
GLN
46
n
46
GLN
46
D
ILE
47
n
47
ILE
47
D
ILE
48
n
48
ILE
48
D
GLN
49
n
49
GLN
49
D
ILE
50
n
50
ILE
50
D
LEU
51
n
51
LEU
51
D
LYS
52
n
52
LYS
52
D
LEU
53
n
53
LEU
53
D
PRO
54
n
54
PRO
54
D
GLN
55
n
55
GLN
55
D
SER
56
n
56
SER
56
D
THR
57
n
57
THR
57
D
VAL
58
n
58
VAL
58
D
SER
59
n
59
SER
59
D
GLN
60
n
60
GLN
60
D
HIS
61
n
61
HIS
61
D
LEU
62
n
62
LEU
62
D
CYS
63
n
63
CYS
63
D
LYS
64
n
64
LYS
64
D
MSE
65
n
65
MSE
65
D
ARG
66
n
66
ARG
66
D
GLY
67
n
67
GLY
67
D
LYS
68
n
68
LYS
68
D
VAL
69
n
69
VAL
69
D
LEU
70
n
70
LEU
70
D
ALA
71
n
71
LYS
71
D
ARG
72
n
72
ARG
72
D
n
73
73
D
n
74
74
D
n
75
75
D
n
76
76
D
n
77
77
D
n
78
78
D
n
79
79
D
TYR
80
n
80
TYR
80
D
TYR
81
n
81
TYR
81
D
SER
82
n
82
SER
82
D
ILE
83
n
83
ILE
83
D
ASN
84
n
84
ASN
84
D
ASN
85
n
85
ASN
85
D
PRO
86
n
86
PRO
86
D
LYS
87
n
87
LYS
87
D
VAL
88
n
88
VAL
88
D
GLU
89
n
89
GLU
89
D
GLY
90
n
90
GLY
90
D
ILE
91
n
91
ILE
91
D
ILE
92
n
92
ILE
92
D
LYS
93
n
93
LYS
93
D
LEU
94
n
94
LEU
94
D
LEU
95
n
95
LEU
95
D
ASN
96
n
96
ASN
96
D
PRO
97
n
97
PRO
97
D
ILE
98
n
98
ILE
98
D
n
99
99
D
author_and_software_defined_assembly
PISA
2
dimeric
author_and_software_defined_assembly
PISA
2
dimeric
author_and_software_defined_assembly
PISA
2
dimeric
1670
-22.0
9710
1710
-18.8
10110
1940
-22.2
8990
A
MSE
12
SELENOMETHIONINE
A
MSE
12
MET
A
MSE
24
SELENOMETHIONINE
A
MSE
24
MET
A
MSE
28
SELENOMETHIONINE
A
MSE
28
MET
A
MSE
65
SELENOMETHIONINE
A
MSE
65
MET
B
MSE
12
SELENOMETHIONINE
B
MSE
12
MET
B
MSE
24
SELENOMETHIONINE
B
MSE
24
MET
B
MSE
28
SELENOMETHIONINE
B
MSE
28
MET
B
MSE
65
SELENOMETHIONINE
B
MSE
65
MET
C
MSE
12
SELENOMETHIONINE
C
MSE
12
MET
C
MSE
24
SELENOMETHIONINE
C
MSE
24
MET
C
MSE
28
SELENOMETHIONINE
C
MSE
28
MET
C
MSE
65
SELENOMETHIONINE
C
MSE
65
MET
D
MSE
12
SELENOMETHIONINE
D
MSE
12
MET
D
MSE
24
SELENOMETHIONINE
D
MSE
24
MET
D
MSE
28
SELENOMETHIONINE
D
MSE
28
MET
D
MSE
65
SELENOMETHIONINE
D
MSE
65
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_556
y,x,-z+1
crystal symmetry operation
0.0000000000
0.0000000000
151.1200000000
A
N
LEU
42
A
N
LEU
42
A
O
TYR
81
A
O
TYR
81
A
O
SER
82
A
O
SER
82
A
N
LYS
71
A
N
LYS
71
B
N
LEU
42
B
N
LEU
42
B
O
TYR
81
B
O
TYR
81
B
O
TYR
80
B
O
TYR
80
B
N
ASN
73
B
N
ASN
73
C
N
LEU
42
C
N
LEU
42
C
O
TYR
81
C
O
TYR
81
C
O
TYR
80
C
O
TYR
80
C
N
ASN
73
C
N
ASN
73
D
N
LYS
71
D
N
LYS
71
D
O
SER
82
D
O
SER
82
1
A
CG
TYR
11
A
CG
TYR
11
1
Y
1
A
CD1
TYR
11
A
CD1
TYR
11
1
Y
1
A
CD2
TYR
11
A
CD2
TYR
11
1
Y
1
A
CE1
TYR
11
A
CE1
TYR
11
1
Y
1
A
CE2
TYR
11
A
CE2
TYR
11
1
Y
1
A
CZ
TYR
11
A
CZ
TYR
11
1
Y
1
A
OH
TYR
11
A
OH
TYR
11
1
Y
1
C
CG
ASN
96
C
CG
ASN
96
1
Y
1
C
OD1
ASN
96
C
OD1
ASN
96
1
Y
1
C
ND2
ASN
96
C
ND2
ASN
96
1
Y
1
D
CG
LYS
71
D
CG
LYS
71
1
Y
1
D
CD
LYS
71
D
CD
LYS
71
1
Y
1
D
CE
LYS
71
D
CE
LYS
71
1
Y
1
D
NZ
LYS
71
D
NZ
LYS
71
1
Y
1
A
MSE
1
A
MSE
1
1
Y
1
A
THR
2
A
THR
2
1
Y
1
A
VAL
3
A
VAL
3
1
Y
1
A
PHE
4
A
PHE
4
1
Y
1
A
VAL
5
A
VAL
5
1
Y
1
A
ASP
6
A
ASP
6
1
Y
1
A
HIS
7
A
HIS
7
1
Y
1
A
LYS
8
A
LYS
8
1
Y
1
A
ILE
9
A
ILE
9
1
Y
1
A
GLU
10
A
GLU
10
1
Y
1
A
PRO
97
A
PRO
97
1
Y
1
A
ILE
98
A
ILE
98
1
Y
1
A
GLN
99
A
GLN
99
1
Y
1
B
MSE
1
B
MSE
1
1
Y
1
B
THR
2
B
THR
2
1
Y
1
B
VAL
3
B
VAL
3
1
Y
1
B
PHE
4
B
PHE
4
1
Y
1
B
VAL
5
B
VAL
5
1
Y
1
B
ASP
6
B
ASP
6
1
Y
1
B
HIS
7
B
HIS
7
1
Y
1
B
LYS
8
B
LYS
8
1
Y
1
B
ILE
9
B
ILE
9
1
Y
1
B
GLU
10
B
GLU
10
1
Y
1
B
PRO
97
B
PRO
97
1
Y
1
B
ILE
98
B
ILE
98
1
Y
1
B
GLN
99
B
GLN
99
1
Y
1
C
MSE
1
C
MSE
1
1
Y
1
C
THR
2
C
THR
2
1
Y
1
C
VAL
3
C
VAL
3
1
Y
1
C
PHE
4
C
PHE
4
1
Y
1
C
VAL
5
C
VAL
5
1
Y
1
C
ASP
6
C
ASP
6
1
Y
1
C
HIS
7
C
HIS
7
1
Y
1
C
LYS
8
C
LYS
8
1
Y
1
C
ILE
9
C
ILE
9
1
Y
1
C
PRO
97
C
PRO
97
1
Y
1
C
ILE
98
C
ILE
98
1
Y
1
C
GLN
99
C
GLN
99
1
Y
1
D
MSE
1
D
MSE
1
1
Y
1
D
THR
2
D
THR
2
1
Y
1
D
VAL
3
D
VAL
3
1
Y
1
D
PHE
4
D
PHE
4
1
Y
1
D
VAL
5
D
VAL
5
1
Y
1
D
ASP
6
D
ASP
6
1
Y
1
D
HIS
7
D
HIS
7
1
Y
1
D
LYS
8
D
LYS
8
1
Y
1
D
ILE
9
D
ILE
9
1
Y
1
D
ASN
73
D
ASN
73
1
Y
1
D
ARG
74
D
ARG
74
1
Y
1
D
GLN
75
D
GLN
75
1
Y
1
D
GLY
76
D
GLY
76
1
Y
1
D
LEU
77
D
LEU
77
1
Y
1
D
GLU
78
D
GLU
78
1
Y
1
D
ILE
79
D
ILE
79
1
Y
1
D
GLN
99
D
GLN
99
1
Y
1
A
LYS
40
66.27
-41.26
1
B
ALA
25
-67.11
51.52
1
B
LYS
40
74.67
-55.83
1
C
ALA
25
-64.88
49.04
1
C
LYS
40
70.96
-47.62
1
D
ALA
25
-67.23
45.62
1
D
LYS
40
68.37
-43.29
1
D
ASN
84
-86.97
-91.70
protein_rep.param
water_rep.param
37.603
1.615
0.000
0.000
1.615
0.000
-3.231
0.266
0.246
2.000
32.87
1341
27628
4.700
97.100
0.822
RANDOM
1
Isotropic
THROUGHOUT
2.00
MAD
Engh & Huber
51.851
2.000
32.87
79
2841
0
0
2762
0.005
1.084
1.75
100
2ZKZ
42122
36646
2.3
2.3
0.067
0.067
1
45.7
12.6
87
0.435
1.75
1.80
2.3
4125
0.435
1
4
49.0
data reduction
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
DENZO
package
data scaling
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
SCALEPACK
package
phasing
Tom Terwilliger
terwilliger@LANL.gov
http://www.solve.lanl.gov/
SOLVE
package
phasing
Terwilliger, T. C
terwilliger@LANL.gov
http://www.solve.lanl.gov/
RESOLVE
package
refinement
Axel T. Brunger
axel.brunger@yale.edu
Fortran_77
http://cns.csb.yale.edu/v1.1/
CNS
package
data extraction
PDB
sw-help@rcsb.rutgers.edu
September 10, 2007
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
3.005
data collection
ADSC
Quantum
Transcriptional repressor pagR
Crystal structure of the transcriptional repressor PagR of Bacillus anthracis
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
A
SER
13
A
SER
13
HELX_P
A
ALA
25
A
ALA
25
1
1
13
A
HIS
26
A
HIS
26
HELX_P
A
LYS
40
A
LYS
40
1
2
15
A
VAL
44
A
VAL
44
HELX_P
A
LYS
52
A
LYS
52
1
3
9
A
PRO
54
A
PRO
54
HELX_P
A
ARG
66
A
ARG
66
1
4
13
A
ASN
85
A
ASN
85
HELX_P
A
ASN
96
A
ASN
96
1
5
12
B
TYR
11
B
TYR
11
HELX_P
B
ALA
25
B
ALA
25
1
6
15
B
HIS
26
B
HIS
26
HELX_P
B
LYS
40
B
LYS
40
1
7
15
B
VAL
44
B
VAL
44
HELX_P
B
LYS
52
B
LYS
52
1
8
9
B
PRO
54
B
PRO
54
HELX_P
B
ARG
66
B
ARG
66
1
9
13
B
ASN
85
B
ASN
85
HELX_P
B
ASN
96
B
ASN
96
1
10
12
C
GLU
10
C
GLU
10
HELX_P
C
ALA
25
C
ALA
25
1
11
16
C
HIS
26
C
HIS
26
HELX_P
C
LYS
40
C
LYS
40
1
12
15
C
VAL
44
C
VAL
44
HELX_P
C
LYS
52
C
LYS
52
1
13
9
C
PRO
54
C
PRO
54
HELX_P
C
ARG
66
C
ARG
66
1
14
13
C
ASN
85
C
ASN
85
HELX_P
C
ASN
96
C
ASN
96
1
15
12
D
SER
13
D
SER
13
HELX_P
D
ALA
25
D
ALA
25
1
16
13
D
HIS
26
D
HIS
26
HELX_P
D
LYS
40
D
LYS
40
1
17
15
D
ASN
43
D
ASN
43
HELX_P
D
LYS
52
D
LYS
52
1
18
10
D
PRO
54
D
PRO
54
HELX_P
D
ARG
66
D
ARG
66
1
19
13
D
ASN
85
D
ASN
85
HELX_P
D
ASN
96
D
ASN
96
1
20
12
covale
1.328
A
TYR
11
A
C
TYR
11
1_555
A
MSE
12
A
N
MSE
12
1_555
covale
1.327
A
MSE
12
A
C
MSE
12
1_555
A
SER
13
A
N
SER
13
1_555
covale
1.330
A
THR
23
A
C
THR
23
1_555
A
MSE
24
A
N
MSE
24
1_555
covale
1.330
A
MSE
24
A
C
MSE
24
1_555
A
ALA
25
A
N
ALA
25
1_555
covale
1.325
A
PRO
27
A
C
PRO
27
1_555
A
MSE
28
A
N
MSE
28
1_555
covale
1.330
A
MSE
28
A
C
MSE
28
1_555
A
ARG
29
A
N
ARG
29
1_555
covale
1.328
A
LYS
64
A
C
LYS
64
1_555
A
MSE
65
A
N
MSE
65
1_555
covale
1.328
A
MSE
65
A
C
MSE
65
1_555
A
ARG
66
A
N
ARG
66
1_555
covale
1.332
B
TYR
11
B
C
TYR
11
1_555
B
MSE
12
B
N
MSE
12
1_555
covale
1.330
B
MSE
12
B
C
MSE
12
1_555
B
SER
13
B
N
SER
13
1_555
covale
1.332
B
THR
23
B
C
THR
23
1_555
B
MSE
24
B
N
MSE
24
1_555
covale
1.328
B
MSE
24
B
C
MSE
24
1_555
B
ALA
25
B
N
ALA
25
1_555
covale
1.326
B
PRO
27
B
C
PRO
27
1_555
B
MSE
28
B
N
MSE
28
1_555
covale
1.328
B
MSE
28
B
C
MSE
28
1_555
B
ARG
29
B
N
ARG
29
1_555
covale
1.330
B
LYS
64
B
C
LYS
64
1_555
B
MSE
65
B
N
MSE
65
1_555
covale
1.328
B
MSE
65
B
C
MSE
65
1_555
B
ARG
66
B
N
ARG
66
1_555
covale
1.330
C
TYR
11
C
C
TYR
11
1_555
C
MSE
12
C
N
MSE
12
1_555
covale
1.327
C
MSE
12
C
C
MSE
12
1_555
C
SER
13
C
N
SER
13
1_555
covale
1.330
C
THR
23
C
C
THR
23
1_555
C
MSE
24
C
N
MSE
24
1_555
covale
1.331
C
MSE
24
C
C
MSE
24
1_555
C
ALA
25
C
N
ALA
25
1_555
covale
1.329
C
PRO
27
C
C
PRO
27
1_555
C
MSE
28
C
N
MSE
28
1_555
covale
1.329
C
MSE
28
C
C
MSE
28
1_555
C
ARG
29
C
N
ARG
29
1_555
covale
1.326
C
LYS
64
C
C
LYS
64
1_555
C
MSE
65
C
N
MSE
65
1_555
covale
1.330
C
MSE
65
C
C
MSE
65
1_555
C
ARG
66
C
N
ARG
66
1_555
covale
1.330
D
TYR
11
D
C
TYR
11
1_555
D
MSE
12
D
N
MSE
12
1_555
covale
1.329
D
MSE
12
D
C
MSE
12
1_555
D
SER
13
D
N
SER
13
1_555
covale
1.329
D
THR
23
D
C
THR
23
1_555
D
MSE
24
D
N
MSE
24
1_555
covale
1.330
D
MSE
24
D
C
MSE
24
1_555
D
ALA
25
D
N
ALA
25
1_555
covale
1.329
D
PRO
27
D
C
PRO
27
1_555
D
MSE
28
D
N
MSE
28
1_555
covale
1.328
D
MSE
28
D
C
MSE
28
1_555
D
ARG
29
D
N
ARG
29
1_555
covale
1.328
D
LYS
64
D
C
LYS
64
1_555
D
MSE
65
D
N
MSE
65
1_555
covale
1.328
D
MSE
65
D
C
MSE
65
1_555
D
ARG
66
D
N
ARG
66
1_555
TRANSCRIPTION
transcriptional repressor, protein-DNA, HTH motif, dimer, DNA-binding, Transcription regulation, TRANSCRIPTION
D
ASN
96
D
ASN
96
1
D
PRO
97
D
PRO
97
0.24
PAGR_BACAN
UNP
1
1
O31178
MTVFVDHKIEYMSLEDDAELLKTMAHPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGKVLKRNRQGLEIY
YSINNPKVEGIIKLLNPIQ
1
99
2ZKZ
1
99
O31178
A
1
1
99
1
99
2ZKZ
1
99
O31178
B
1
1
99
1
99
2ZKZ
1
99
O31178
C
1
1
99
1
99
2ZKZ
1
99
O31178
D
1
1
99
3
3
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
42
A
LEU
42
A
ASN
43
A
ASN
43
A
GLU
78
A
GLU
78
A
SER
82
A
SER
82
A
LYS
71
A
LYS
71
A
GLN
75
A
GLN
75
B
LEU
42
B
LEU
42
B
ASN
43
B
ASN
43
B
GLU
78
B
GLU
78
B
ILE
83
B
ILE
83
B
LEU
70
B
LEU
70
B
GLN
75
B
GLN
75
C
LEU
42
C
LEU
42
C
ASN
43
C
ASN
43
C
GLU
78
C
GLU
78
C
ILE
83
C
ILE
83
C
LEU
70
C
LEU
70
C
GLN
75
C
GLN
75
D
LEU
70
D
LEU
70
D
LYS
71
D
LYS
71
D
SER
82
D
SER
82
D
ILE
83
D
ILE
83
92
P 41 21 2