0.011967
0.000000
0.002863
0.000000
0.014078
0.000000
0.000000
0.000000
0.011819
0.00000
0.00000
0.00000
Theodossis, A.
Dunstone, M.A.
Rossjohn, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
103.45
90.00
83.561
71.033
86.999
C4 H9 N O2
103.120
n
ALPHA-AMINOBUTYRIC ACID
L-peptide linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
C
N
7
N
O
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
N
N
18
S
C
N
19
N
C
N
20
N
O
N
21
N
C
N
22
N
O
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
N
N
31
S
C
N
32
N
C
N
33
N
O
N
34
N
C
N
35
N
C
N
36
N
C
N
37
N
N
N
38
N
C
N
39
N
N
N
40
N
N
N
41
N
O
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
N
N
58
S
C
N
59
N
C
N
60
N
O
N
61
N
C
N
62
N
C
N
63
N
O
N
64
N
N
N
65
N
O
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
O
N
81
N
O
N
82
N
O
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
N
N
91
R
C
N
92
N
C
N
93
N
O
N
94
N
C
N
95
N
S
N
96
N
O
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
N
N
105
S
C
N
106
N
C
N
107
N
O
N
108
N
C
N
109
N
C
N
110
N
C
N
111
N
O
N
112
N
N
N
113
N
O
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
N
N
125
S
C
N
126
N
C
N
127
N
O
N
128
N
C
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
O
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
N
N
144
N
C
N
145
N
C
N
146
N
O
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
N
N
154
S
C
N
155
N
C
N
156
N
O
N
157
N
C
Y
158
N
C
Y
159
N
N
Y
160
N
C
Y
161
N
C
Y
162
N
N
N
163
N
O
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
N
N
178
S
C
N
179
N
C
N
180
N
O
N
181
S
C
N
182
N
C
N
183
N
C
N
184
N
C
N
185
N
O
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
N
N
200
S
C
N
201
N
C
N
202
N
O
N
203
N
C
N
204
N
C
N
205
N
C
N
206
N
C
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
N
N
222
S
C
N
223
N
C
N
224
N
O
N
225
N
C
N
226
N
C
N
227
N
C
N
228
N
C
N
229
N
N
N
230
N
O
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
N
N
247
S
C
N
248
N
C
N
249
N
O
N
250
N
C
N
251
N
C
N
252
N
S
N
253
N
C
N
254
N
O
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
N
N
267
S
C
N
268
N
C
N
269
N
O
N
270
N
C
Y
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
Y
275
N
C
Y
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
N
N
290
S
C
N
291
N
C
N
292
N
O
N
293
N
C
N
294
N
C
N
295
N
C
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
N
N
307
S
C
N
308
N
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
S
N
321
N
O
N
322
N
O
N
323
N
O
N
324
N
O
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
R
C
N
330
N
O
N
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
N
N
343
S
C
N
344
N
C
N
345
N
O
N
346
N
C
Y
347
N
C
Y
348
N
C
Y
349
N
C
Y
350
N
N
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
N
356
N
O
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
N
380
N
O
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
N
398
N
C
N
399
N
C
N
400
N
O
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
doub
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
doub
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
doub
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
doub
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
doub
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
doub
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
Y
155
N
sing
Y
156
N
doub
Y
157
N
doub
N
158
N
sing
Y
159
N
sing
N
160
N
sing
Y
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
doub
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
Y
263
N
doub
Y
264
N
sing
Y
265
N
sing
N
266
N
sing
Y
267
N
doub
N
268
N
sing
Y
269
N
doub
N
270
N
sing
Y
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
doub
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
doub
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
Y
336
N
doub
Y
337
N
sing
Y
338
N
sing
N
339
N
sing
Y
340
N
doub
Y
341
N
sing
Y
342
N
sing
N
343
N
sing
Y
344
N
sing
Y
345
N
doub
N
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
doub
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
Y
364
N
doub
Y
365
N
sing
Y
366
N
sing
N
367
N
sing
Y
368
N
doub
N
369
N
sing
Y
370
N
doub
N
371
N
sing
Y
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
doub
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
US
J Immunol.
0022-1767
180
3926
3937
10.4049/jimmunol.180.6.3926
18322201
Structural and biological basis of CTL escape in coronavirus-infected mice.
2008
10.2210/pdb2zol/pdb
pdb_00002zol
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2007-07-20
MAR CCD 165 mm
SINGLE WAVELENGTH
M
x-ray
1
0.999
1.0
MX1
Australian Synchrotron
0.999
SYNCHROTRON
AUSTRALIAN SYNCHROTRON BEAMLINE MX1
32463.109
H-2 class I histocompatibility antigen, D-B alpha chain
extracellular domain, UNP residues 25-299
2
man
polymer
11835.555
Beta-2-microglobulin
2
man
polymer
910.007
9-meric peptide from Spike glycoprotein
UNP residues 510-518
W4S
2
syn
polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
116
nat
water
H-2D(B)
peptidic epitope S510
no
no
GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRN
LLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYL
EGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGT
FQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWERWE
GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRN
LLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYL
EGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGT
FQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWERWE
A,C
polypeptide(L)
no
no
MIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYA
CRVKHDSMAEPKTVYWDRDM
MIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYA
CRVKHDSMAEPKTVYWDRDM
D,B
polypeptide(L)
no
yes
(ABA)SLSNGPHL
ASLSNGPHL
F,E
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
mouse
sample
10090
Mus musculus
562
Escherichia coli
plasmid
mouse
sample
10090
Mus musculus
562
Escherichia coli
plasmid
1
2.78
55.71
VAPOR DIFFUSION, HANGING DROP
6.4
0.1M sodium citrate, 28% PEG 3350, 0.15M lithium sulfate, pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 294K
294
software
citation
struct_conn
struct_ref_seq_dif
database_2
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
struct_ncs_dom_lim
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
Database references
Derived calculations
Data collection
Refinement description
Data collection
1
0
2008-06-10
1
1
2011-07-13
1
2
2017-10-11
1
3
2019-11-06
1
4
2021-11-10
1
5
2023-11-01
1
6
2023-11-15
_software.name
_citation.journal_abbrev
_citation.journal_id_ASTM
_citation.journal_id_CSD
_citation.pdbx_database_id_DOI
_citation.title
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_ncs_dom_lim.beg_auth_comp_id
_struct_ncs_dom_lim.end_auth_comp_id
_chem_comp_atom.atom_id
_chem_comp_bond.atom_id_2
Complex of the index S510 epitope
PDBJ
Y
PDBJ
2008-05-22
REL
REL
SO4
SULFATE ION
HOH
water
synthetic peptide
sample
1BZ9
PDB ENTRY 1BZ9
PDB
experimental model
SO4
1
4
SO4
SO4
10
F
HOH
3
5
HOH
HOH
279
A
HOH
9
5
HOH
HOH
280
A
HOH
12
5
HOH
HOH
281
A
HOH
14
5
HOH
HOH
282
A
HOH
16
5
HOH
HOH
283
A
HOH
27
5
HOH
HOH
284
A
HOH
33
5
HOH
HOH
285
A
HOH
38
5
HOH
HOH
286
A
HOH
61
5
HOH
HOH
287
A
HOH
62
5
HOH
HOH
288
A
HOH
73
5
HOH
HOH
289
A
HOH
78
5
HOH
HOH
290
A
HOH
93
5
HOH
HOH
291
A
HOH
94
5
HOH
HOH
292
A
HOH
108
5
HOH
HOH
293
A
HOH
118
5
HOH
HOH
294
A
HOH
133
5
HOH
HOH
295
A
HOH
142
5
HOH
HOH
296
A
HOH
143
5
HOH
HOH
297
A
HOH
144
5
HOH
HOH
298
A
HOH
146
5
HOH
HOH
299
A
HOH
152
5
HOH
HOH
300
A
HOH
156
5
HOH
HOH
301
A
HOH
157
5
HOH
HOH
302
A
HOH
163
5
HOH
HOH
303
A
HOH
165
5
HOH
HOH
304
A
HOH
169
5
HOH
HOH
305
A
HOH
170
5
HOH
HOH
306
A
HOH
175
5
HOH
HOH
307
A
HOH
179
5
HOH
HOH
308
A
HOH
187
5
HOH
HOH
309
A
HOH
188
5
HOH
HOH
310
A
HOH
193
5
HOH
HOH
311
A
HOH
196
5
HOH
HOH
312
A
HOH
198
5
HOH
HOH
313
A
HOH
23
5
HOH
HOH
314
A
HOH
5
5
HOH
HOH
279
C
HOH
7
5
HOH
HOH
280
C
HOH
15
5
HOH
HOH
281
C
HOH
31
5
HOH
HOH
282
C
HOH
49
5
HOH
HOH
283
C
HOH
50
5
HOH
HOH
284
C
HOH
54
5
HOH
HOH
285
C
HOH
57
5
HOH
HOH
286
C
HOH
58
5
HOH
HOH
287
C
HOH
64
5
HOH
HOH
288
C
HOH
70
5
HOH
HOH
289
C
HOH
82
5
HOH
HOH
290
C
HOH
83
5
HOH
HOH
291
C
HOH
96
5
HOH
HOH
292
C
HOH
107
5
HOH
HOH
293
C
HOH
120
5
HOH
HOH
294
C
HOH
139
5
HOH
HOH
295
C
HOH
140
5
HOH
HOH
296
C
HOH
147
5
HOH
HOH
297
C
HOH
151
5
HOH
HOH
298
C
HOH
154
5
HOH
HOH
299
C
HOH
155
5
HOH
HOH
300
C
HOH
159
5
HOH
HOH
301
C
HOH
160
5
HOH
HOH
302
C
HOH
161
5
HOH
HOH
303
C
HOH
162
5
HOH
HOH
304
C
HOH
164
5
HOH
HOH
305
C
HOH
166
5
HOH
HOH
306
C
HOH
167
5
HOH
HOH
307
C
HOH
176
5
HOH
HOH
308
C
HOH
178
5
HOH
HOH
309
C
HOH
180
5
HOH
HOH
310
C
HOH
182
5
HOH
HOH
311
C
HOH
184
5
HOH
HOH
312
C
HOH
189
5
HOH
HOH
313
C
HOH
190
5
HOH
HOH
314
C
HOH
192
5
HOH
HOH
315
C
HOH
194
5
HOH
HOH
316
C
HOH
197
5
HOH
HOH
317
C
HOH
149
5
HOH
HOH
318
C
HOH
21
5
HOH
HOH
100
D
HOH
32
5
HOH
HOH
101
D
HOH
46
5
HOH
HOH
102
D
HOH
60
5
HOH
HOH
103
D
HOH
65
5
HOH
HOH
104
D
HOH
66
5
HOH
HOH
105
D
HOH
67
5
HOH
HOH
106
D
HOH
84
5
HOH
HOH
107
D
HOH
98
5
HOH
HOH
108
D
HOH
101
5
HOH
HOH
109
D
HOH
141
5
HOH
HOH
110
D
HOH
148
5
HOH
HOH
111
D
HOH
158
5
HOH
HOH
112
D
HOH
171
5
HOH
HOH
113
D
HOH
172
5
HOH
HOH
114
D
HOH
177
5
HOH
HOH
115
D
HOH
181
5
HOH
HOH
116
D
HOH
183
5
HOH
HOH
117
D
HOH
185
5
HOH
HOH
118
D
HOH
191
5
HOH
HOH
119
D
HOH
17
5
HOH
HOH
100
B
HOH
20
5
HOH
HOH
101
B
HOH
44
5
HOH
HOH
102
B
HOH
48
5
HOH
HOH
103
B
HOH
76
5
HOH
HOH
104
B
HOH
95
5
HOH
HOH
105
B
HOH
106
5
HOH
HOH
106
B
HOH
116
5
HOH
HOH
107
B
HOH
145
5
HOH
HOH
108
B
HOH
150
5
HOH
HOH
109
B
HOH
153
5
HOH
HOH
110
B
HOH
168
5
HOH
HOH
111
B
HOH
173
5
HOH
HOH
112
B
HOH
174
5
HOH
HOH
113
B
HOH
195
5
HOH
HOH
114
B
HOH
92
5
HOH
HOH
11
F
HOH
99
5
HOH
HOH
12
F
HOH
114
5
HOH
HOH
13
F
HOH
56
5
HOH
HOH
10
E
HOH
186
5
HOH
HOH
11
E
n
1
1
A
PRO
2
n
2
PRO
2
A
HIS
3
n
3
HIS
3
A
SER
4
n
4
SER
4
A
MET
5
n
5
MET
5
A
ARG
6
n
6
ARG
6
A
TYR
7
n
7
TYR
7
A
PHE
8
n
8
PHE
8
A
GLU
9
n
9
GLU
9
A
THR
10
n
10
THR
10
A
ALA
11
n
11
ALA
11
A
VAL
12
n
12
VAL
12
A
SER
13
n
13
SER
13
A
ARG
14
n
14
ARG
14
A
PRO
15
n
15
PRO
15
A
GLY
16
n
16
GLY
16
A
n
17
17
A
n
18
18
A
GLU
19
n
19
GLU
19
A
PRO
20
n
20
PRO
20
A
ARG
21
n
21
ARG
21
A
TYR
22
n
22
TYR
22
A
ILE
23
n
23
ILE
23
A
SER
24
n
24
SER
24
A
VAL
25
n
25
VAL
25
A
GLY
26
n
26
GLY
26
A
TYR
27
n
27
TYR
27
A
VAL
28
n
28
VAL
28
A
ASP
29
n
29
ASP
29
A
ASN
30
n
30
ASN
30
A
LYS
31
n
31
LYS
31
A
GLU
32
n
32
GLU
32
A
PHE
33
n
33
PHE
33
A
VAL
34
n
34
VAL
34
A
ARG
35
n
35
ARG
35
A
PHE
36
n
36
PHE
36
A
ASP
37
n
37
ASP
37
A
SER
38
n
38
SER
38
A
ASP
39
n
39
ASP
39
A
ALA
40
n
40
ALA
40
A
GLU
41
n
41
GLU
41
A
ASN
42
n
42
ASN
42
A
PRO
43
n
43
PRO
43
A
ARG
44
n
44
ARG
44
A
TYR
45
n
45
TYR
45
A
GLU
46
n
46
GLU
46
A
PRO
47
n
47
PRO
47
A
ARG
48
n
48
ARG
48
A
ALA
49
n
49
ALA
49
A
PRO
50
n
50
PRO
50
A
TRP
51
n
51
TRP
51
A
MET
52
n
52
MET
52
A
GLU
53
n
53
GLU
53
A
GLN
54
n
54
GLN
54
A
GLU
55
n
55
GLU
55
A
GLY
56
n
56
GLY
56
A
PRO
57
n
57
PRO
57
A
GLU
58
n
58
GLU
58
A
TYR
59
n
59
TYR
59
A
TRP
60
n
60
TRP
60
A
GLU
61
n
61
GLU
61
A
ARG
62
n
62
ARG
62
A
GLU
63
n
63
GLU
63
A
THR
64
n
64
THR
64
A
GLN
65
n
65
GLN
65
A
LYS
66
n
66
LYS
66
A
ALA
67
n
67
ALA
67
A
LYS
68
n
68
LYS
68
A
GLY
69
n
69
GLY
69
A
GLN
70
n
70
GLN
70
A
GLU
71
n
71
GLU
71
A
GLN
72
n
72
GLN
72
A
TRP
73
n
73
TRP
73
A
PHE
74
n
74
PHE
74
A
ARG
75
n
75
ARG
75
A
VAL
76
n
76
VAL
76
A
SER
77
n
77
SER
77
A
LEU
78
n
78
LEU
78
A
ARG
79
n
79
ARG
79
A
ASN
80
n
80
ASN
80
A
LEU
81
n
81
LEU
81
A
LEU
82
n
82
LEU
82
A
GLY
83
n
83
GLY
83
A
TYR
84
n
84
TYR
84
A
TYR
85
n
85
TYR
85
A
ASN
86
n
86
ASN
86
A
GLN
87
n
87
GLN
87
A
SER
88
n
88
SER
88
A
ALA
89
n
89
ALA
89
A
GLY
90
n
90
GLY
90
A
GLY
91
n
91
GLY
91
A
SER
92
n
92
SER
92
A
HIS
93
n
93
HIS
93
A
THR
94
n
94
THR
94
A
LEU
95
n
95
LEU
95
A
GLN
96
n
96
GLN
96
A
GLN
97
n
97
GLN
97
A
MET
98
n
98
MET
98
A
SER
99
n
99
SER
99
A
GLY
100
n
100
GLY
100
A
CYS
101
n
101
CYS
101
A
ASP
102
n
102
ASP
102
A
LEU
103
n
103
LEU
103
A
GLY
104
n
104
GLY
104
A
SER
105
n
105
SER
105
A
ASP
106
n
106
ASP
106
A
TRP
107
n
107
TRP
107
A
ARG
108
n
108
ARG
108
A
LEU
109
n
109
LEU
109
A
LEU
110
n
110
LEU
110
A
ARG
111
n
111
ARG
111
A
GLY
112
n
112
GLY
112
A
TYR
113
n
113
TYR
113
A
LEU
114
n
114
LEU
114
A
GLN
115
n
115
GLN
115
A
PHE
116
n
116
PHE
116
A
ALA
117
n
117
ALA
117
A
TYR
118
n
118
TYR
118
A
GLU
119
n
119
GLU
119
A
GLY
120
n
120
GLY
120
A
ARG
121
n
121
ARG
121
A
ASP
122
n
122
ASP
122
A
TYR
123
n
123
TYR
123
A
ILE
124
n
124
ILE
124
A
ALA
125
n
125
ALA
125
A
LEU
126
n
126
LEU
126
A
ASN
127
n
127
ASN
127
A
GLU
128
n
128
GLU
128
A
ASP
129
n
129
ASP
129
A
LEU
130
n
130
LEU
130
A
LYS
131
n
131
LYS
131
A
THR
132
n
132
THR
132
A
TRP
133
n
133
TRP
133
A
THR
134
n
134
THR
134
A
ALA
135
n
135
ALA
135
A
ALA
136
n
136
ALA
136
A
ASP
137
n
137
ASP
137
A
MET
138
n
138
MET
138
A
ALA
139
n
139
ALA
139
A
ALA
140
n
140
ALA
140
A
GLN
141
n
141
GLN
141
A
ILE
142
n
142
ILE
142
A
THR
143
n
143
THR
143
A
ARG
144
n
144
ARG
144
A
ARG
145
n
145
ARG
145
A
LYS
146
n
146
LYS
146
A
TRP
147
n
147
TRP
147
A
GLU
148
n
148
GLU
148
A
GLN
149
n
149
GLN
149
A
SER
150
n
150
SER
150
A
GLY
151
n
151
GLY
151
A
ALA
152
n
152
ALA
152
A
ALA
153
n
153
ALA
153
A
GLU
154
n
154
GLU
154
A
HIS
155
n
155
HIS
155
A
TYR
156
n
156
TYR
156
A
LYS
157
n
157
LYS
157
A
ALA
158
n
158
ALA
158
A
TYR
159
n
159
TYR
159
A
LEU
160
n
160
LEU
160
A
GLU
161
n
161
GLU
161
A
GLY
162
n
162
GLY
162
A
GLU
163
n
163
GLU
163
A
CYS
164
n
164
CYS
164
A
VAL
165
n
165
VAL
165
A
GLU
166
n
166
GLU
166
A
TRP
167
n
167
TRP
167
A
LEU
168
n
168
LEU
168
A
HIS
169
n
169
HIS
169
A
ARG
170
n
170
ARG
170
A
TYR
171
n
171
TYR
171
A
LEU
172
n
172
LEU
172
A
LYS
173
n
173
LYS
173
A
ASN
174
n
174
ASN
174
A
GLY
175
n
175
GLY
175
A
ASN
176
n
176
ASN
176
A
ALA
177
n
177
ALA
177
A
THR
178
n
178
THR
178
A
LEU
179
n
179
LEU
179
A
LEU
180
n
180
LEU
180
A
ARG
181
n
181
ARG
181
A
THR
182
n
182
THR
182
A
ASP
183
n
183
ASP
183
A
SER
184
n
184
SER
184
A
PRO
185
n
185
PRO
185
A
LYS
186
n
186
LYS
186
A
ALA
187
n
187
ALA
187
A
HIS
188
n
188
HIS
188
A
VAL
189
n
189
VAL
189
A
THR
190
n
190
THR
190
A
HIS
191
n
191
HIS
191
A
HIS
192
n
192
HIS
192
A
PRO
193
n
193
PRO
193
A
ARG
194
n
194
ARG
194
A
SER
195
n
195
SER
195
A
LYS
196
n
196
LYS
196
A
GLY
197
n
197
GLY
197
A
GLU
198
n
198
GLU
198
A
VAL
199
n
199
VAL
199
A
THR
200
n
200
THR
200
A
LEU
201
n
201
LEU
201
A
ARG
202
n
202
ARG
202
A
CYS
203
n
203
CYS
203
A
TRP
204
n
204
TRP
204
A
ALA
205
n
205
ALA
205
A
LEU
206
n
206
LEU
206
A
GLY
207
n
207
GLY
207
A
PHE
208
n
208
PHE
208
A
TYR
209
n
209
TYR
209
A
PRO
210
n
210
PRO
210
A
ALA
211
n
211
ALA
211
A
ASP
212
n
212
ASP
212
A
ILE
213
n
213
ILE
213
A
THR
214
n
214
THR
214
A
LEU
215
n
215
LEU
215
A
THR
216
n
216
THR
216
A
TRP
217
n
217
TRP
217
A
n
218
218
A
n
219
219
A
n
220
220
A
n
221
221
A
n
222
222
A
n
223
223
A
n
224
224
A
n
225
225
A
n
226
226
A
n
227
227
A
MET
228
n
228
MET
228
A
GLU
229
n
229
GLU
229
A
LEU
230
n
230
LEU
230
A
VAL
231
n
231
VAL
231
A
GLU
232
n
232
GLU
232
A
THR
233
n
233
THR
233
A
ARG
234
n
234
ARG
234
A
PRO
235
n
235
PRO
235
A
ALA
236
n
236
ALA
236
A
GLY
237
n
237
GLY
237
A
ASP
238
n
238
ASP
238
A
GLY
239
n
239
GLY
239
A
THR
240
n
240
THR
240
A
PHE
241
n
241
PHE
241
A
GLN
242
n
242
GLN
242
A
LYS
243
n
243
LYS
243
A
TRP
244
n
244
TRP
244
A
ALA
245
n
245
ALA
245
A
SER
246
n
246
SER
246
A
VAL
247
n
247
VAL
247
A
VAL
248
n
248
VAL
248
A
VAL
249
n
249
VAL
249
A
PRO
250
n
250
PRO
250
A
LEU
251
n
251
LEU
251
A
n
252
252
A
n
253
253
A
n
254
254
A
GLN
255
n
255
GLN
255
A
ASN
256
n
256
ASN
256
A
TYR
257
n
257
TYR
257
A
THR
258
n
258
THR
258
A
CYS
259
n
259
CYS
259
A
ARG
260
n
260
ARG
260
A
VAL
261
n
261
VAL
261
A
TYR
262
n
262
TYR
262
A
HIS
263
n
263
HIS
263
A
GLU
264
n
264
GLU
264
A
GLY
265
n
265
GLY
265
A
LEU
266
n
266
LEU
266
A
PRO
267
n
267
PRO
267
A
GLU
268
n
268
GLU
268
A
PRO
269
n
269
PRO
269
A
LEU
270
n
270
LEU
270
A
THR
271
n
271
THR
271
A
LEU
272
n
272
LEU
272
A
ARG
273
n
273
ARG
273
A
TRP
274
n
274
TRP
274
A
n
275
275
A
n
276
276
A
n
277
277
A
n
278
278
A
n
1
1
C
PRO
2
n
2
PRO
2
C
HIS
3
n
3
HIS
3
C
SER
4
n
4
SER
4
C
MET
5
n
5
MET
5
C
ARG
6
n
6
ARG
6
C
TYR
7
n
7
TYR
7
C
PHE
8
n
8
PHE
8
C
GLU
9
n
9
GLU
9
C
THR
10
n
10
THR
10
C
ALA
11
n
11
ALA
11
C
VAL
12
n
12
VAL
12
C
SER
13
n
13
SER
13
C
ARG
14
n
14
ARG
14
C
PRO
15
n
15
PRO
15
C
GLY
16
n
16
GLY
16
C
n
17
17
C
n
18
18
C
GLU
19
n
19
GLU
19
C
PRO
20
n
20
PRO
20
C
ARG
21
n
21
ARG
21
C
TYR
22
n
22
TYR
22
C
ILE
23
n
23
ILE
23
C
SER
24
n
24
SER
24
C
VAL
25
n
25
VAL
25
C
GLY
26
n
26
GLY
26
C
TYR
27
n
27
TYR
27
C
VAL
28
n
28
VAL
28
C
ASP
29
n
29
ASP
29
C
ASN
30
n
30
ASN
30
C
LYS
31
n
31
LYS
31
C
GLU
32
n
32
GLU
32
C
PHE
33
n
33
PHE
33
C
VAL
34
n
34
VAL
34
C
ARG
35
n
35
ARG
35
C
PHE
36
n
36
PHE
36
C
ASP
37
n
37
ASP
37
C
SER
38
n
38
SER
38
C
ASP
39
n
39
ASP
39
C
ALA
40
n
40
ALA
40
C
GLU
41
n
41
GLU
41
C
ASN
42
n
42
ASN
42
C
PRO
43
n
43
PRO
43
C
ARG
44
n
44
ARG
44
C
TYR
45
n
45
TYR
45
C
GLU
46
n
46
GLU
46
C
PRO
47
n
47
PRO
47
C
ARG
48
n
48
ARG
48
C
ALA
49
n
49
ALA
49
C
PRO
50
n
50
PRO
50
C
TRP
51
n
51
TRP
51
C
MET
52
n
52
MET
52
C
GLU
53
n
53
GLU
53
C
GLN
54
n
54
GLN
54
C
GLU
55
n
55
GLU
55
C
GLY
56
n
56
GLY
56
C
PRO
57
n
57
PRO
57
C
GLU
58
n
58
GLU
58
C
TYR
59
n
59
TYR
59
C
TRP
60
n
60
TRP
60
C
GLU
61
n
61
GLU
61
C
ARG
62
n
62
ARG
62
C
GLU
63
n
63
GLU
63
C
THR
64
n
64
THR
64
C
GLN
65
n
65
GLN
65
C
LYS
66
n
66
LYS
66
C
ALA
67
n
67
ALA
67
C
LYS
68
n
68
LYS
68
C
GLY
69
n
69
GLY
69
C
GLN
70
n
70
GLN
70
C
GLU
71
n
71
GLU
71
C
GLN
72
n
72
GLN
72
C
TRP
73
n
73
TRP
73
C
PHE
74
n
74
PHE
74
C
ARG
75
n
75
ARG
75
C
VAL
76
n
76
VAL
76
C
SER
77
n
77
SER
77
C
LEU
78
n
78
LEU
78
C
ARG
79
n
79
ARG
79
C
ASN
80
n
80
ASN
80
C
LEU
81
n
81
LEU
81
C
LEU
82
n
82
LEU
82
C
GLY
83
n
83
GLY
83
C
TYR
84
n
84
TYR
84
C
TYR
85
n
85
TYR
85
C
ASN
86
n
86
ASN
86
C
GLN
87
n
87
GLN
87
C
SER
88
n
88
SER
88
C
ALA
89
n
89
ALA
89
C
GLY
90
n
90
GLY
90
C
GLY
91
n
91
GLY
91
C
SER
92
n
92
SER
92
C
HIS
93
n
93
HIS
93
C
THR
94
n
94
THR
94
C
LEU
95
n
95
LEU
95
C
GLN
96
n
96
GLN
96
C
GLN
97
n
97
GLN
97
C
MET
98
n
98
MET
98
C
SER
99
n
99
SER
99
C
GLY
100
n
100
GLY
100
C
CYS
101
n
101
CYS
101
C
ASP
102
n
102
ASP
102
C
LEU
103
n
103
LEU
103
C
GLY
104
n
104
GLY
104
C
SER
105
n
105
SER
105
C
ASP
106
n
106
ASP
106
C
TRP
107
n
107
TRP
107
C
ARG
108
n
108
ARG
108
C
LEU
109
n
109
LEU
109
C
LEU
110
n
110
LEU
110
C
ARG
111
n
111
ARG
111
C
GLY
112
n
112
GLY
112
C
TYR
113
n
113
TYR
113
C
LEU
114
n
114
LEU
114
C
GLN
115
n
115
GLN
115
C
PHE
116
n
116
PHE
116
C
ALA
117
n
117
ALA
117
C
TYR
118
n
118
TYR
118
C
GLU
119
n
119
GLU
119
C
GLY
120
n
120
GLY
120
C
ARG
121
n
121
ARG
121
C
ASP
122
n
122
ASP
122
C
TYR
123
n
123
TYR
123
C
ILE
124
n
124
ILE
124
C
ALA
125
n
125
ALA
125
C
LEU
126
n
126
LEU
126
C
ASN
127
n
127
ASN
127
C
GLU
128
n
128
GLU
128
C
ASP
129
n
129
ASP
129
C
LEU
130
n
130
LEU
130
C
LYS
131
n
131
LYS
131
C
THR
132
n
132
THR
132
C
TRP
133
n
133
TRP
133
C
THR
134
n
134
THR
134
C
ALA
135
n
135
ALA
135
C
ALA
136
n
136
ALA
136
C
ASP
137
n
137
ASP
137
C
MET
138
n
138
MET
138
C
ALA
139
n
139
ALA
139
C
ALA
140
n
140
ALA
140
C
GLN
141
n
141
GLN
141
C
ILE
142
n
142
ILE
142
C
THR
143
n
143
THR
143
C
ARG
144
n
144
ARG
144
C
ARG
145
n
145
ARG
145
C
LYS
146
n
146
LYS
146
C
TRP
147
n
147
TRP
147
C
GLU
148
n
148
GLU
148
C
GLN
149
n
149
GLN
149
C
SER
150
n
150
SER
150
C
GLY
151
n
151
GLY
151
C
ALA
152
n
152
ALA
152
C
ALA
153
n
153
ALA
153
C
GLU
154
n
154
GLU
154
C
HIS
155
n
155
HIS
155
C
TYR
156
n
156
TYR
156
C
LYS
157
n
157
LYS
157
C
ALA
158
n
158
ALA
158
C
TYR
159
n
159
TYR
159
C
LEU
160
n
160
LEU
160
C
GLU
161
n
161
GLU
161
C
GLY
162
n
162
GLY
162
C
GLU
163
n
163
GLU
163
C
CYS
164
n
164
CYS
164
C
VAL
165
n
165
VAL
165
C
GLU
166
n
166
GLU
166
C
TRP
167
n
167
TRP
167
C
LEU
168
n
168
LEU
168
C
HIS
169
n
169
HIS
169
C
ARG
170
n
170
ARG
170
C
TYR
171
n
171
TYR
171
C
LEU
172
n
172
LEU
172
C
LYS
173
n
173
LYS
173
C
ASN
174
n
174
ASN
174
C
GLY
175
n
175
GLY
175
C
ASN
176
n
176
ASN
176
C
ALA
177
n
177
ALA
177
C
THR
178
n
178
THR
178
C
LEU
179
n
179
LEU
179
C
LEU
180
n
180
LEU
180
C
ARG
181
n
181
ARG
181
C
THR
182
n
182
THR
182
C
ASP
183
n
183
ASP
183
C
SER
184
n
184
SER
184
C
PRO
185
n
185
PRO
185
C
LYS
186
n
186
LYS
186
C
ALA
187
n
187
ALA
187
C
HIS
188
n
188
HIS
188
C
VAL
189
n
189
VAL
189
C
THR
190
n
190
THR
190
C
HIS
191
n
191
HIS
191
C
HIS
192
n
192
HIS
192
C
PRO
193
n
193
PRO
193
C
ARG
194
n
194
ARG
194
C
SER
195
n
195
SER
195
C
LYS
196
n
196
LYS
196
C
GLY
197
n
197
GLY
197
C
GLU
198
n
198
GLU
198
C
VAL
199
n
199
VAL
199
C
THR
200
n
200
THR
200
C
LEU
201
n
201
LEU
201
C
ARG
202
n
202
ARG
202
C
CYS
203
n
203
CYS
203
C
TRP
204
n
204
TRP
204
C
ALA
205
n
205
ALA
205
C
LEU
206
n
206
LEU
206
C
GLY
207
n
207
GLY
207
C
PHE
208
n
208
PHE
208
C
TYR
209
n
209
TYR
209
C
PRO
210
n
210
PRO
210
C
ALA
211
n
211
ALA
211
C
ASP
212
n
212
ASP
212
C
ILE
213
n
213
ILE
213
C
THR
214
n
214
THR
214
C
LEU
215
n
215
LEU
215
C
THR
216
n
216
THR
216
C
TRP
217
n
217
TRP
217
C
n
218
218
C
n
219
219
C
n
220
220
C
n
221
221
C
n
222
222
C
n
223
223
C
n
224
224
C
n
225
225
C
n
226
226
C
n
227
227
C
MET
228
n
228
MET
228
C
GLU
229
n
229
GLU
229
C
LEU
230
n
230
LEU
230
C
VAL
231
n
231
VAL
231
C
GLU
232
n
232
GLU
232
C
THR
233
n
233
THR
233
C
ARG
234
n
234
ARG
234
C
PRO
235
n
235
PRO
235
C
ALA
236
n
236
ALA
236
C
GLY
237
n
237
GLY
237
C
ASP
238
n
238
ASP
238
C
GLY
239
n
239
GLY
239
C
THR
240
n
240
THR
240
C
PHE
241
n
241
PHE
241
C
GLN
242
n
242
GLN
242
C
LYS
243
n
243
LYS
243
C
TRP
244
n
244
TRP
244
C
ALA
245
n
245
ALA
245
C
SER
246
n
246
SER
246
C
VAL
247
n
247
VAL
247
C
VAL
248
n
248
VAL
248
C
VAL
249
n
249
VAL
249
C
n
250
250
C
n
251
251
C
n
252
252
C
n
253
253
C
n
254
254
C
GLN
255
n
255
GLN
255
C
ASN
256
n
256
ASN
256
C
TYR
257
n
257
TYR
257
C
THR
258
n
258
THR
258
C
CYS
259
n
259
CYS
259
C
ARG
260
n
260
ARG
260
C
VAL
261
n
261
VAL
261
C
TYR
262
n
262
TYR
262
C
HIS
263
n
263
HIS
263
C
GLU
264
n
264
GLU
264
C
GLY
265
n
265
GLY
265
C
LEU
266
n
266
LEU
266
C
PRO
267
n
267
PRO
267
C
GLU
268
n
268
GLU
268
C
PRO
269
n
269
PRO
269
C
LEU
270
n
270
LEU
270
C
THR
271
n
271
THR
271
C
LEU
272
n
272
LEU
272
C
ARG
273
n
273
ARG
273
C
TRP
274
n
274
TRP
274
C
n
275
275
C
n
276
276
C
n
277
277
C
n
278
278
C
n
1
0
D
n
2
1
D
GLN
2
n
3
GLN
2
D
LYS
3
n
4
LYS
3
D
THR
4
n
5
THR
4
D
PRO
5
n
6
PRO
5
D
GLN
6
n
7
GLN
6
D
ILE
7
n
8
ILE
7
D
GLN
8
n
9
GLN
8
D
VAL
9
n
10
VAL
9
D
TYR
10
n
11
TYR
10
D
SER
11
n
12
SER
11
D
ARG
12
n
13
ARG
12
D
HIS
13
n
14
HIS
13
D
PRO
14
n
15
PRO
14
D
PRO
15
n
16
PRO
15
D
GLU
16
n
17
GLU
16
D
ASN
17
n
18
ASN
17
D
GLY
18
n
19
GLY
18
D
LYS
19
n
20
LYS
19
D
PRO
20
n
21
PRO
20
D
ASN
21
n
22
ASN
21
D
ILE
22
n
23
ILE
22
D
LEU
23
n
24
LEU
23
D
ASN
24
n
25
ASN
24
D
CYS
25
n
26
CYS
25
D
TYR
26
n
27
TYR
26
D
VAL
27
n
28
VAL
27
D
THR
28
n
29
THR
28
D
GLN
29
n
30
GLN
29
D
PHE
30
n
31
PHE
30
D
HIS
31
n
32
HIS
31
D
PRO
32
n
33
PRO
32
D
PRO
33
n
34
PRO
33
D
HIS
34
n
35
HIS
34
D
ILE
35
n
36
ILE
35
D
GLU
36
n
37
GLU
36
D
ILE
37
n
38
ILE
37
D
GLN
38
n
39
GLN
38
D
MET
39
n
40
MET
39
D
LEU
40
n
41
LEU
40
D
LYS
41
n
42
LYS
41
D
ASN
42
n
43
ASN
42
D
GLY
43
n
44
GLY
43
D
LYS
44
n
45
LYS
44
D
LYS
45
n
46
LYS
45
D
ILE
46
n
47
ILE
46
D
PRO
47
n
48
PRO
47
D
LYS
48
n
49
LYS
48
D
VAL
49
n
50
VAL
49
D
GLU
50
n
51
GLU
50
D
MET
51
n
52
MET
51
D
SER
52
n
53
SER
52
D
ASP
53
n
54
ASP
53
D
MET
54
n
55
MET
54
D
SER
55
n
56
SER
55
D
PHE
56
n
57
PHE
56
D
SER
57
n
58
SER
57
D
LYS
58
n
59
LYS
58
D
ASP
59
n
60
ASP
59
D
TRP
60
n
61
TRP
60
D
SER
61
n
62
SER
61
D
PHE
62
n
63
PHE
62
D
TYR
63
n
64
TYR
63
D
ILE
64
n
65
ILE
64
D
LEU
65
n
66
LEU
65
D
ALA
66
n
67
ALA
66
D
HIS
67
n
68
HIS
67
D
THR
68
n
69
THR
68
D
GLU
69
n
70
GLU
69
D
PHE
70
n
71
PHE
70
D
THR
71
n
72
THR
71
D
PRO
72
n
73
PRO
72
D
THR
73
n
74
THR
73
D
GLU
74
n
75
GLU
74
D
THR
75
n
76
THR
75
D
ASP
76
n
77
ASP
76
D
THR
77
n
78
THR
77
D
TYR
78
n
79
TYR
78
D
ALA
79
n
80
ALA
79
D
CYS
80
n
81
CYS
80
D
ARG
81
n
82
ARG
81
D
VAL
82
n
83
VAL
82
D
LYS
83
n
84
LYS
83
D
HIS
84
n
85
HIS
84
D
ASP
85
n
86
ASP
85
D
SER
86
n
87
SER
86
D
MET
87
n
88
MET
87
D
ALA
88
n
89
ALA
88
D
GLU
89
n
90
GLU
89
D
PRO
90
n
91
PRO
90
D
LYS
91
n
92
LYS
91
D
THR
92
n
93
THR
92
D
VAL
93
n
94
VAL
93
D
TYR
94
n
95
TYR
94
D
TRP
95
n
96
TRP
95
D
ASP
96
n
97
ASP
96
D
ARG
97
n
98
ARG
97
D
ASP
98
n
99
ASP
98
D
MET
99
n
100
MET
99
D
n
1
0
B
n
2
1
B
GLN
2
n
3
GLN
2
B
LYS
3
n
4
LYS
3
B
THR
4
n
5
THR
4
B
PRO
5
n
6
PRO
5
B
GLN
6
n
7
GLN
6
B
ILE
7
n
8
ILE
7
B
GLN
8
n
9
GLN
8
B
VAL
9
n
10
VAL
9
B
TYR
10
n
11
TYR
10
B
SER
11
n
12
SER
11
B
ARG
12
n
13
ARG
12
B
HIS
13
n
14
HIS
13
B
PRO
14
n
15
PRO
14
B
PRO
15
n
16
PRO
15
B
GLU
16
n
17
GLU
16
B
ASN
17
n
18
ASN
17
B
GLY
18
n
19
GLY
18
B
LYS
19
n
20
LYS
19
B
PRO
20
n
21
PRO
20
B
ASN
21
n
22
ASN
21
B
ILE
22
n
23
ILE
22
B
LEU
23
n
24
LEU
23
B
ASN
24
n
25
ASN
24
B
CYS
25
n
26
CYS
25
B
TYR
26
n
27
TYR
26
B
VAL
27
n
28
VAL
27
B
THR
28
n
29
THR
28
B
GLN
29
n
30
GLN
29
B
PHE
30
n
31
PHE
30
B
HIS
31
n
32
HIS
31
B
PRO
32
n
33
PRO
32
B
PRO
33
n
34
PRO
33
B
HIS
34
n
35
HIS
34
B
ILE
35
n
36
ILE
35
B
GLU
36
n
37
GLU
36
B
ILE
37
n
38
ILE
37
B
GLN
38
n
39
GLN
38
B
MET
39
n
40
MET
39
B
LEU
40
n
41
LEU
40
B
LYS
41
n
42
LYS
41
B
ASN
42
n
43
ASN
42
B
GLY
43
n
44
GLY
43
B
LYS
44
n
45
LYS
44
B
LYS
45
n
46
LYS
45
B
ILE
46
n
47
ILE
46
B
PRO
47
n
48
PRO
47
B
LYS
48
n
49
LYS
48
B
VAL
49
n
50
VAL
49
B
GLU
50
n
51
GLU
50
B
MET
51
n
52
MET
51
B
SER
52
n
53
SER
52
B
ASP
53
n
54
ASP
53
B
MET
54
n
55
MET
54
B
SER
55
n
56
SER
55
B
PHE
56
n
57
PHE
56
B
SER
57
n
58
SER
57
B
LYS
58
n
59
LYS
58
B
ASP
59
n
60
ASP
59
B
TRP
60
n
61
TRP
60
B
SER
61
n
62
SER
61
B
PHE
62
n
63
PHE
62
B
TYR
63
n
64
TYR
63
B
ILE
64
n
65
ILE
64
B
LEU
65
n
66
LEU
65
B
ALA
66
n
67
ALA
66
B
HIS
67
n
68
HIS
67
B
THR
68
n
69
THR
68
B
GLU
69
n
70
GLU
69
B
PHE
70
n
71
PHE
70
B
THR
71
n
72
THR
71
B
PRO
72
n
73
PRO
72
B
THR
73
n
74
THR
73
B
GLU
74
n
75
GLU
74
B
THR
75
n
76
THR
75
B
ASP
76
n
77
ASP
76
B
THR
77
n
78
THR
77
B
TYR
78
n
79
TYR
78
B
ALA
79
n
80
ALA
79
B
CYS
80
n
81
CYS
80
B
ARG
81
n
82
ARG
81
B
VAL
82
n
83
VAL
82
B
LYS
83
n
84
LYS
83
B
HIS
84
n
85
HIS
84
B
ASP
85
n
86
ASP
85
B
SER
86
n
87
SER
86
B
MET
87
n
88
MET
87
B
ALA
88
n
89
ALA
88
B
GLU
89
n
90
GLU
89
B
PRO
90
n
91
PRO
90
B
LYS
91
n
92
LYS
91
B
THR
92
n
93
THR
92
B
VAL
93
n
94
VAL
93
B
TYR
94
n
95
TYR
94
B
TRP
95
n
96
TRP
95
B
ASP
96
n
97
ASP
96
B
ARG
97
n
98
ARG
97
B
ASP
98
n
99
ASP
98
B
MET
99
n
100
MET
99
B
ABA
1
n
1
ABA
1
F
SER
2
n
2
SER
2
F
LEU
3
n
3
LEU
3
F
SER
4
n
4
SER
4
F
ASN
5
n
5
ASN
5
F
GLY
6
n
6
GLY
6
F
PRO
7
n
7
PRO
7
F
HIS
8
n
8
HIS
8
F
LEU
9
n
9
LEU
9
F
ABA
1
n
1
ABA
1
E
SER
2
n
2
SER
2
E
LEU
3
n
3
LEU
3
E
SER
4
n
4
SER
4
E
ASN
5
n
5
ASN
5
E
GLY
6
n
6
GLY
6
E
PRO
7
n
7
PRO
7
E
HIS
8
n
8
HIS
8
E
LEU
9
n
9
LEU
9
E
author_and_software_defined_assembly
PISA
3
trimeric
author_and_software_defined_assembly
PISA
3
trimeric
software_defined_assembly
PISA
6
hexameric
4190
-28
18830
3960
-17
18540
9900
-60
35630
F
ABA
1
ALPHA-AMINOBUTYRIC ACID
E
ABA
1
ALA
E
ABA
1
ALPHA-AMINOBUTYRIC ACID
F
ABA
1
ALA
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_545
x,y-1,z
crystal symmetry operation
0.0000000000
-71.0330000000
0.0000000000
A
O
GLU
46
A
O
GLU
46
A
N
ARG
35
A
N
ARG
35
A
O
PHE
36
A
O
PHE
36
A
N
SER
24
A
N
SER
24
A
O
TYR
27
A
O
TYR
27
A
N
ARG
6
A
N
ARG
6
A
N
HIS
3
A
N
HIS
3
A
O
LEU
103
A
O
LEU
103
A
N
ASP
102
A
N
ASP
102
A
O
ARG
111
A
O
ARG
111
A
N
LEU
114
A
N
LEU
114
A
O
LEU
126
A
O
LEU
126
A
N
ALA
125
A
N
ALA
125
A
O
THR
134
A
O
THR
134
A
N
HIS
188
A
N
HIS
188
A
O
TRP
204
A
O
TRP
204
A
N
VAL
199
A
N
VAL
199
A
O
VAL
249
A
O
VAL
249
A
O
SER
246
A
O
SER
246
A
N
GLU
229
A
N
GLU
229
A
N
HIS
188
A
N
HIS
188
A
O
TRP
204
A
O
TRP
204
A
N
VAL
199
A
N
VAL
199
A
O
VAL
249
A
O
VAL
249
A
O
GLN
242
A
O
GLN
242
A
N
ARG
234
A
N
ARG
234
A
N
THR
216
A
N
THR
216
A
O
ARG
260
A
O
ARG
260
A
N
CYS
259
A
N
CYS
259
A
O
LEU
272
A
O
LEU
272
C
O
GLU
46
B
O
GLU
46
C
N
ARG
35
B
N
ARG
35
C
O
PHE
36
B
O
PHE
36
C
N
SER
24
B
N
SER
24
C
O
TYR
27
B
O
TYR
27
C
N
ARG
6
B
N
ARG
6
C
N
HIS
3
B
N
HIS
3
C
O
LEU
103
B
O
LEU
103
C
N
ASP
102
B
N
ASP
102
C
O
ARG
111
B
O
ARG
111
C
N
LEU
114
B
N
LEU
114
C
O
LEU
126
B
O
LEU
126
C
N
ALA
125
B
N
ALA
125
C
O
THR
134
B
O
THR
134
C
N
HIS
188
B
N
HIS
188
C
O
TRP
204
B
O
TRP
204
C
N
VAL
199
B
N
VAL
199
C
O
VAL
249
B
O
VAL
249
C
O
SER
246
B
O
SER
246
C
N
GLU
229
B
N
GLU
229
C
N
HIS
188
B
N
HIS
188
C
O
TRP
204
B
O
TRP
204
C
N
VAL
199
B
N
VAL
199
C
O
VAL
249
B
O
VAL
249
C
O
GLN
242
B
O
GLN
242
C
N
ARG
234
B
N
ARG
234
C
N
THR
216
B
N
THR
216
C
O
ARG
260
B
O
ARG
260
C
N
CYS
259
B
N
CYS
259
C
O
LEU
272
B
O
LEU
272
D
N
TYR
10
C
N
TYR
11
D
O
ASN
24
C
O
ASN
25
D
N
CYS
25
C
N
CYS
26
D
O
ALA
66
C
O
ALA
67
D
O
HIS
67
C
O
HIS
68
D
N
GLU
50
C
N
GLU
51
D
N
TYR
10
C
N
TYR
11
D
O
ASN
24
C
O
ASN
25
D
N
CYS
25
C
N
CYS
26
D
O
ALA
66
C
O
ALA
67
D
O
TYR
63
C
O
TYR
64
D
N
SER
55
C
N
SER
56
D
O
LYS
44
C
O
LYS
45
D
N
LYS
41
C
N
LYS
42
D
N
GLU
36
C
N
GLU
37
D
O
LYS
83
C
O
LYS
84
D
N
VAL
82
C
N
VAL
83
D
O
LYS
91
C
O
LYS
92
B
N
TYR
10
D
N
TYR
11
B
O
ASN
24
D
O
ASN
25
B
N
CYS
25
D
N
CYS
26
B
O
ALA
66
D
O
ALA
67
B
O
HIS
67
D
O
HIS
68
B
N
GLU
50
D
N
GLU
51
B
N
TYR
10
D
N
TYR
11
B
O
ASN
24
D
O
ASN
25
B
N
CYS
25
D
N
CYS
26
B
O
ALA
66
D
O
ALA
67
B
O
TYR
63
D
O
TYR
64
B
N
SER
55
D
N
SER
56
B
O
LYS
44
D
O
LYS
45
B
N
LYS
41
D
N
LYS
42
B
N
GLU
36
D
N
GLU
37
B
O
LYS
83
D
O
LYS
84
B
N
VAL
82
D
N
VAL
83
B
O
LYS
91
D
O
LYS
92
1
A
GLY
1
A
GLY
1
1
Y
1
A
LEU
17
A
LEU
17
1
Y
1
A
GLU
18
A
GLU
18
1
Y
1
A
GLN
218
A
GLN
218
1
Y
1
A
LEU
219
A
LEU
219
1
Y
1
A
ASN
220
A
ASN
220
1
Y
1
A
GLY
221
A
GLY
221
1
Y
1
A
GLU
222
A
GLU
222
1
Y
1
A
GLU
223
A
GLU
223
1
Y
1
A
LEU
224
A
LEU
224
1
Y
1
A
THR
225
A
THR
225
1
Y
1
A
GLN
226
A
GLN
226
1
Y
1
A
ASP
227
A
ASP
227
1
Y
1
A
GLY
252
A
GLY
252
1
Y
1
A
LYS
253
A
LYS
253
1
Y
1
A
GLU
254
A
GLU
254
1
Y
1
A
GLU
275
A
GLU
275
1
Y
1
A
ARG
276
A
ARG
276
1
Y
1
A
TRP
277
A
TRP
277
1
Y
1
A
GLU
278
A
GLU
278
1
Y
1
C
GLY
1
B
GLY
1
1
Y
1
C
LEU
17
B
LEU
17
1
Y
1
C
GLU
18
B
GLU
18
1
Y
1
C
GLN
218
B
GLN
218
1
Y
1
C
LEU
219
B
LEU
219
1
Y
1
C
ASN
220
B
ASN
220
1
Y
1
C
GLY
221
B
GLY
221
1
Y
1
C
GLU
222
B
GLU
222
1
Y
1
C
GLU
223
B
GLU
223
1
Y
1
C
LEU
224
B
LEU
224
1
Y
1
C
THR
225
B
THR
225
1
Y
1
C
GLN
226
B
GLN
226
1
Y
1
C
ASP
227
B
ASP
227
1
Y
1
C
PRO
250
B
PRO
250
1
Y
1
C
LEU
251
B
LEU
251
1
Y
1
C
GLY
252
B
GLY
252
1
Y
1
C
LYS
253
B
LYS
253
1
Y
1
C
GLU
254
B
GLU
254
1
Y
1
C
GLU
275
B
GLU
275
1
Y
1
C
ARG
276
B
ARG
276
1
Y
1
C
TRP
277
B
TRP
277
1
Y
1
C
GLU
278
B
GLU
278
1
Y
1
D
MET
0
C
MET
1
1
Y
1
D
ILE
1
C
ILE
2
1
Y
1
B
MET
0
D
MET
1
1
Y
1
B
ILE
1
D
ILE
2
1
Y
1
C
D
NH2
O
ARG
MET
35
54
2.14
1
A
LYS
196
118.79
-11.83
1
A
PRO
250
-71.20
-165.03
1
C
LYS
196
120.82
-14.40
1
D
TRP
60
86.59
-22.02
1
B
ASN
42
59.81
16.37
1
B
TRP
60
85.32
-22.42
26.996
1.00
0.00
0.21
0.04
0.00
-0.95
0.870
0.795
number water chains for final H2DbW4S model
0.30726
0.2537
0.2564
0.2564
2.70
33.70
1368
25849
25849
5.0
99.04
15.253
0.321
RANDOM
1
Isotropic
THROUGHOUT
MOLECULAR REPLACEMENT
1.460
0.412
0.80
0.80
1.40
PDB ENTRY 1BZ9
MAXIMUM LIKELIHOOD
MASK
2.70
33.70
116
6112
5
0
5991
0.006
0.021
6180
0.960
1.933
8387
5.114
5.000
716
33.546
23.270
318
17.330
15.000
1008
15.472
15.000
48
0.066
0.200
843
0.002
0.020
4826
0.174
0.200
2461
0.296
0.200
4001
0.128
0.200
200
0.190
0.200
62
0.134
0.200
8
0.529
2.000
3758
0.954
3.000
5861
0.663
4.000
2888
1.061
5.000
2526
1
A
1
708
X-RAY DIFFRACTION
tight positional
0.03
0.05
1
A
2
316
X-RAY DIFFRACTION
tight positional
0.02
0.05
1
B
3
392
X-RAY DIFFRACTION
tight positional
0.02
0.05
1
E
4
36
X-RAY DIFFRACTION
tight positional
0.02
0.05
1
A
1
760
X-RAY DIFFRACTION
loose positional
0.42
5.00
1
A
2
327
X-RAY DIFFRACTION
loose positional
0.61
5.00
1
B
3
421
X-RAY DIFFRACTION
loose positional
0.45
5.00
1
E
4
28
X-RAY DIFFRACTION
loose positional
0.04
5.00
1
A
1
708
X-RAY DIFFRACTION
tight thermal
0.02
0.50
1
A
2
316
X-RAY DIFFRACTION
tight thermal
0.02
0.50
1
B
3
392
X-RAY DIFFRACTION
tight thermal
0.03
0.50
1
E
4
36
X-RAY DIFFRACTION
tight thermal
0.02
0.50
1
A
1
760
X-RAY DIFFRACTION
loose thermal
0.54
10.00
1
A
2
327
X-RAY DIFFRACTION
loose thermal
0.40
10.00
1
B
3
421
X-RAY DIFFRACTION
loose thermal
0.65
10.00
1
E
4
28
X-RAY DIFFRACTION
loose thermal
0.41
10.00
0.373
0.307
2.770
108
1861
20
98.70
51.6
2.7
54.39
2ZOL
27219
27219
0.083
0.083
1
8.2
3.0
99.3
0.330
2.70
2.85
3.2
3940
0.330
3.0
99.1
refinement
REFMAC
5.2.0019
data collection
Blu-Ice
ICE
data reduction
MOSFLM
data scaling
SCALA
phasing
PHASER
Crystal structure of H-2Db in complex with the W513S variant of JHMV epitope S510
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
A
ALA
49
A
ALA
49
HELX_P
A
GLU
55
A
GLU
55
5
1
7
A
GLY
56
A
GLY
56
HELX_P
A
TYR
85
A
TYR
85
1
2
30
A
ASP
137
A
ASP
137
HELX_P
A
SER
150
A
SER
150
1
3
14
A
GLY
151
A
GLY
151
HELX_P
A
GLY
162
A
GLY
162
1
4
12
A
GLY
162
A
GLY
162
HELX_P
A
GLY
175
A
GLY
175
1
5
14
A
GLY
175
A
GLY
175
HELX_P
A
LEU
180
A
LEU
180
1
6
6
C
ALA
49
B
ALA
49
HELX_P
C
GLU
55
B
GLU
55
5
7
7
C
GLY
56
B
GLY
56
HELX_P
C
TYR
85
B
TYR
85
1
8
30
C
ASP
137
B
ASP
137
HELX_P
C
SER
150
B
SER
150
1
9
14
C
GLY
151
B
GLY
151
HELX_P
C
GLY
162
B
GLY
162
1
10
12
C
GLY
162
B
GLY
162
HELX_P
C
GLY
175
B
GLY
175
1
11
14
C
GLY
175
B
GLY
175
HELX_P
C
LEU
180
B
LEU
180
1
12
6
disulf
2.041
A
CYS
101
A
SG
CYS
101
1_555
A
CYS
164
A
SG
CYS
164
1_555
disulf
2.023
A
CYS
203
A
SG
CYS
203
1_555
A
CYS
259
A
SG
CYS
259
1_555
disulf
2.037
C
CYS
101
B
SG
CYS
101
1_555
C
CYS
164
B
SG
CYS
164
1_555
disulf
2.024
C
CYS
203
B
SG
CYS
203
1_555
C
CYS
259
B
SG
CYS
259
1_555
disulf
2.033
D
CYS
25
C
SG
CYS
26
1_555
D
CYS
80
C
SG
CYS
81
1_555
disulf
2.029
B
CYS
25
D
SG
CYS
26
1_555
B
CYS
80
D
SG
CYS
81
1_555
covale
1.330
both
F
ABA
1
E
C
ABA
1
1_555
F
SER
2
E
N
SER
2
1_555
covale
1.332
both
E
ABA
1
F
C
ABA
1
1_555
E
SER
2
F
N
SER
2
1_555
IMMUNE SYSTEM
Immune System, Ig fold, Glycoprotein, Immune response, Membrane, MHC I, Transmembrane, Immunoglobulin domain, Polymorphism, Secreted, Cleavage on pair of basic residues, Coiled coil, Envelope protein, Fusion protein, Host-virus interaction, Virion, Virulence
A
ALA
89
A
ALA
89
1
A
GLY
90
A
GLY
90
-3.54
A
TYR
209
A
TYR
209
1
A
PRO
210
A
PRO
210
0.24
C
PRO
15
B
PRO
15
1
C
GLY
16
B
GLY
16
-15.53
C
ALA
89
B
ALA
89
1
C
GLY
90
B
GLY
90
-3.17
C
TYR
209
B
TYR
209
1
C
PRO
210
B
PRO
210
-0.87
D
HIS
31
C
HIS
32
1
D
PRO
32
C
PRO
33
4.34
B
HIS
31
D
HIS
32
1
B
PRO
32
D
PRO
33
1.83
A
C
A
C
B
D
E
F
A
PRO
2
A
PRO
2
A
LEU
180
A
LEU
180
3
C
PRO
2
B
PRO
2
C
LEU
180
B
LEU
180
3
A
ARG
181
A
ARG
181
A
TRP
274
A
TRP
274
3
C
ARG
181
B
ARG
181
C
TRP
274
B
TRP
274
3
B
GLN
2
D
GLN
3
B
MET
99
D
MET
100
3
D
GLN
2
C
GLN
3
D
MET
99
C
MET
100
3
E
ABA
1
F
ABA
1
E
LEU
9
F
LEU
9
3
F
ABA
1
E
ABA
1
F
LEU
9
E
LEU
9
3
HA11_MOUSE
UNP
1
25
P01899
GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRN
LLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYL
EGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGT
FQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWE
B2MG_MOUSE
UNP
2
21
P01887
IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC
RVKHDSMAEPKTVYWDRDM
SPIKE_CVMJC
UNP
3
510
Q02385
CSLWNGPHL
25
299
2ZOL
1
275
P01899
A
1
1
275
25
299
2ZOL
1
275
P01899
C
1
1
275
21
119
2ZOL
1
99
P01887
D
2
2
100
21
119
2ZOL
1
99
P01887
B
2
2
100
510
518
2ZOL
1
9
Q02385
F
3
1
9
510
518
2ZOL
1
9
Q02385
E
3
1
9
1
expression tag
ARG
276
2ZOL
A
P01899
UNP
276
1
expression tag
TRP
277
2ZOL
A
P01899
UNP
277
1
expression tag
GLU
278
2ZOL
A
P01899
UNP
278
2
expression tag
ARG
276
2ZOL
C
P01899
UNP
276
2
expression tag
TRP
277
2ZOL
C
P01899
UNP
277
2
expression tag
GLU
278
2ZOL
C
P01899
UNP
278
3
initiating methionine
MET
0
2ZOL
D
P01887
UNP
1
4
initiating methionine
MET
0
2ZOL
B
P01887
UNP
1
5
CYS
modified residue
ABA
1
2ZOL
F
Q02385
UNP
510
1
5
TRP
engineered mutation
SER
4
2ZOL
F
Q02385
UNP
513
4
6
CYS
modified residue
ABA
1
2ZOL
E
Q02385
UNP
510
1
6
TRP
engineered mutation
SER
4
2ZOL
E
Q02385
UNP
513
4
8
4
4
3
8
4
4
3
4
4
4
4
4
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
46
A
GLU
46
A
PRO
47
A
PRO
47
A
LYS
31
A
LYS
31
A
ASP
37
A
ASP
37
A
ARG
21
A
ARG
21
A
VAL
28
A
VAL
28
A
HIS
3
A
HIS
3
A
VAL
12
A
VAL
12
A
THR
94
A
THR
94
A
LEU
103
A
LEU
103
A
LEU
109
A
LEU
109
A
TYR
118
A
TYR
118
A
ARG
121
A
ARG
121
A
LEU
126
A
LEU
126
A
TRP
133
A
TRP
133
A
ALA
135
A
ALA
135
A
LYS
186
A
LYS
186
A
PRO
193
A
PRO
193
A
VAL
199
A
VAL
199
A
PHE
208
A
PHE
208
A
PHE
241
A
PHE
241
A
VAL
249
A
VAL
249
A
GLU
229
A
GLU
229
A
LEU
230
A
LEU
230
A
LYS
186
A
LYS
186
A
PRO
193
A
PRO
193
A
VAL
199
A
VAL
199
A
PHE
208
A
PHE
208
A
PHE
241
A
PHE
241
A
VAL
249
A
VAL
249
A
ARG
234
A
ARG
234
A
PRO
235
A
PRO
235
A
THR
214
A
THR
214
A
THR
216
A
THR
216
A
CYS
259
A
CYS
259
A
TYR
262
A
TYR
262
A
LEU
270
A
LEU
270
A
LEU
272
A
LEU
272
C
GLU
46
B
GLU
46
C
PRO
47
B
PRO
47
C
LYS
31
B
LYS
31
C
ASP
37
B
ASP
37
C
ARG
21
B
ARG
21
C
VAL
28
B
VAL
28
C
HIS
3
B
HIS
3
C
VAL
12
B
VAL
12
C
THR
94
B
THR
94
C
LEU
103
B
LEU
103
C
LEU
109
B
LEU
109
C
TYR
118
B
TYR
118
C
ARG
121
B
ARG
121
C
LEU
126
B
LEU
126
C
TRP
133
B
TRP
133
C
ALA
135
B
ALA
135
C
LYS
186
B
LYS
186
C
PRO
193
B
PRO
193
C
VAL
199
B
VAL
199
C
PHE
208
B
PHE
208
C
PHE
241
B
PHE
241
C
VAL
249
B
VAL
249
C
GLU
229
B
GLU
229
C
LEU
230
B
LEU
230
C
LYS
186
B
LYS
186
C
PRO
193
B
PRO
193
C
VAL
199
B
VAL
199
C
PHE
208
B
PHE
208
C
PHE
241
B
PHE
241
C
VAL
249
B
VAL
249
C
ARG
234
B
ARG
234
C
PRO
235
B
PRO
235
C
THR
214
B
THR
214
C
THR
216
B
THR
216
C
CYS
259
B
CYS
259
C
TYR
262
B
TYR
262
C
LEU
270
B
LEU
270
C
LEU
272
B
LEU
272
D
GLN
6
C
GLN
7
D
SER
11
C
SER
12
D
ASN
21
C
ASN
22
D
PHE
30
C
PHE
31
D
PHE
62
C
PHE
63
D
PHE
70
C
PHE
71
D
GLU
50
C
GLU
51
D
MET
51
C
MET
52
D
GLN
6
C
GLN
7
D
SER
11
C
SER
12
D
ASN
21
C
ASN
22
D
PHE
30
C
PHE
31
D
PHE
62
C
PHE
63
D
PHE
70
C
PHE
71
D
SER
55
C
SER
56
D
PHE
56
C
PHE
57
D
LYS
44
C
LYS
45
D
LYS
45
C
LYS
46
D
GLU
36
C
GLU
37
D
LYS
41
C
LYS
42
D
TYR
78
C
TYR
79
D
LYS
83
C
LYS
84
D
LYS
91
C
LYS
92
D
TYR
94
C
TYR
95
B
GLN
6
D
GLN
7
B
SER
11
D
SER
12
B
ASN
21
D
ASN
22
B
PHE
30
D
PHE
31
B
PHE
62
D
PHE
63
B
PHE
70
D
PHE
71
B
GLU
50
D
GLU
51
B
MET
51
D
MET
52
B
GLN
6
D
GLN
7
B
SER
11
D
SER
12
B
ASN
21
D
ASN
22
B
PHE
30
D
PHE
31
B
PHE
62
D
PHE
63
B
PHE
70
D
PHE
71
B
SER
55
D
SER
56
B
PHE
56
D
PHE
57
B
LYS
44
D
LYS
45
B
LYS
45
D
LYS
46
B
GLU
36
D
GLU
37
B
LYS
41
D
LYS
42
B
TYR
78
D
TYR
79
B
LYS
83
D
LYS
84
B
LYS
91
D
LYS
92
B
TYR
94
D
TYR
95
BINDING SITE FOR RESIDUE SO4 F 10
F
SO4
10
Software
6
A
LYS
146
A
LYS
146
6
1_545
C
LYS
146
B
LYS
146
6
1_555
E
PRO
7
F
PRO
7
6
1_545
E
HIS
8
F
HIS
8
6
1_545
F
PRO
7
E
PRO
7
6
1_555
F
HIS
8
E
HIS
8
6
1_555
3
P 1 2 1