0.022587 0.000000 0.005362 0.000000 0.016266 0.000000 0.000000 0.000000 0.022602 0.00000 0.00000 0.00000 Sugiyama, K. Obayashi, E. Park, S.-Y. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 103.35 90.00 44.273 61.477 45.473 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Embo J. EMJODG 0897 0261-4189 28 1803 1811 10.1038/emboj.2009.138 19461581 Structural insight into the essential PB1-PB2 subunit contact of the influenza virus RNA polymerase 2009 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 273 1 mirrors CCD 2008-06-18 ADSC QUANTUM 270 MAD M x-ray 1 0.97898 1.0 0.97931 1.0 0.9832 1.0 BL-17A Photon Factory 0.97898,0.97931,0.9832 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 9588.427 RNA-directed RNA polymerase catalytic subunit 2.7.7.48 PB1 C-terminal fragment, UNP residues 679-757 2 man polymer 4731.061 Polymerase basic protein 2 PB2 N-terminal ragment, UNP residues 1-37 2 man polymer 18.015 water 33 nat water RNA polymerase PB1 subunit, Polymerase basic protein 1, PB1, RNA-directed RNA polymerase subunit P1 RNA polymerase PB2 subunit, RNA-directed RNA polymerase subunit P3 no yes QRGVLEDEQ(MSE)YQRCCNLFEKFFPSSSYRRPVGISS(MSE)VEA(MSE)VSRARIDARIDFESGRIKKEEFTEI (MSE)KICSTIEELRRQK QRGVLEDEQMYQRCCNLFEKFFPSSSYRRPVGISSMVEAMVSRARIDARIDFESGRIKKEEFTEIMKICSTIEELRRQK A,C polypeptide(L) no yes GGS(MSE)ERIKELRNL(MSE)SQSRTREILTKTTVDH(MSE)AIIKKYTSG GGSMERIKELRNLMSQSRTREILTKTTVDHMAIIKKYTSG B,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample PB1 211044 Influenza A virus (A/Puerto Rico/8/34(H1N1)) 562 Escherichia coli B824(DE3)codonplus plasmid modified pET28b sample PB2 211044 Influenza A virus (A/Puerto Rico/8/34(H1N1)) 562 Escherichia coli B834(DE3)codonplus plasmid modified pET28b 1 2.10 41.50 VAPOR DIFFUSION, HANGING DROP 5.8 0.1M potassium phosphate, 15% PEG 4000, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 repository Initial release Version format compliance 1 0 2009-06-09 1 1 2011-07-13 PDBJ Y PDBJ 2008-10-08 REL REL HOH water HOH 3 3 HOH HOH 3 A HOH 5 3 HOH HOH 5 A HOH 8 3 HOH HOH 8 A HOH 10 3 HOH HOH 10 A HOH 12 3 HOH HOH 12 A HOH 14 3 HOH HOH 14 A HOH 15 3 HOH HOH 15 A HOH 16 3 HOH HOH 16 A HOH 17 3 HOH HOH 17 A HOH 19 3 HOH HOH 19 A HOH 20 3 HOH HOH 20 A HOH 25 3 HOH HOH 25 A HOH 26 3 HOH HOH 26 A HOH 29 3 HOH HOH 29 A HOH 30 3 HOH HOH 30 A HOH 9 3 HOH HOH 38 B HOH 24 3 HOH HOH 39 B HOH 31 3 HOH HOH 40 B HOH 32 3 HOH HOH 41 B HOH 1 3 HOH HOH 1 C HOH 2 3 HOH HOH 2 C HOH 7 3 HOH HOH 7 C HOH 11 3 HOH HOH 11 C HOH 18 3 HOH HOH 18 C HOH 21 3 HOH HOH 21 C HOH 23 3 HOH HOH 23 C HOH 27 3 HOH HOH 27 C HOH 4 3 HOH HOH 38 D HOH 6 3 HOH HOH 39 D HOH 13 3 HOH HOH 40 D HOH 22 3 HOH HOH 41 D HOH 28 3 HOH HOH 42 D HOH 33 3 HOH HOH 43 D n 1 679 A n 2 680 A n 3 681 A n 4 682 A n 5 683 A n 6 684 A ASP 685 n 7 ASP 685 A GLU 686 n 8 GLU 686 A GLN 687 n 9 GLN 687 A MSE 688 n 10 MSE 688 A TYR 689 n 11 TYR 689 A GLN 690 n 12 GLN 690 A ARG 691 n 13 ARG 691 A CYS 692 n 14 CYS 692 A CYS 693 n 15 CYS 693 A ASN 694 n 16 ASN 694 A LEU 695 n 17 LEU 695 A PHE 696 n 18 PHE 696 A GLU 697 n 19 GLU 697 A LYS 698 n 20 LYS 698 A PHE 699 n 21 PHE 699 A PHE 700 n 22 PHE 700 A PRO 701 n 23 PRO 701 A SER 702 n 24 SER 702 A SER 703 n 25 SER 703 A SER 704 n 26 SER 704 A TYR 705 n 27 TYR 705 A ARG 706 n 28 ARG 706 A ARG 707 n 29 ARG 707 A PRO 708 n 30 PRO 708 A VAL 709 n 31 VAL 709 A GLY 710 n 32 GLY 710 A ILE 711 n 33 ILE 711 A SER 712 n 34 SER 712 A SER 713 n 35 SER 713 A MSE 714 n 36 MSE 714 A VAL 715 n 37 VAL 715 A GLU 716 n 38 GLU 716 A ALA 717 n 39 ALA 717 A MSE 718 n 40 MSE 718 A VAL 719 n 41 VAL 719 A SER 720 n 42 SER 720 A ARG 721 n 43 ARG 721 A ALA 722 n 44 ALA 722 A ARG 723 n 45 ARG 723 A ILE 724 n 46 ILE 724 A ASP 725 n 47 ASP 725 A ALA 726 n 48 ALA 726 A ARG 727 n 49 ARG 727 A ILE 728 n 50 ILE 728 A ASP 729 n 51 ASP 729 A PHE 730 n 52 PHE 730 A GLU 731 n 53 GLU 731 A SER 732 n 54 SER 732 A GLY 733 n 55 GLY 733 A ARG 734 n 56 ARG 734 A ILE 735 n 57 ILE 735 A LYS 736 n 58 LYS 736 A LYS 737 n 59 LYS 737 A GLU 738 n 60 GLU 738 A GLU 739 n 61 GLU 739 A PHE 740 n 62 PHE 740 A THR 741 n 63 THR 741 A GLU 742 n 64 GLU 742 A ILE 743 n 65 ILE 743 A MSE 744 n 66 MSE 744 A LYS 745 n 67 LYS 745 A ILE 746 n 68 ILE 746 A CYS 747 n 69 CYS 747 A SER 748 n 70 SER 748 A THR 749 n 71 THR 749 A ILE 750 n 72 ILE 750 A GLU 751 n 73 GLU 751 A GLU 752 n 74 GLU 752 A LEU 753 n 75 LEU 753 A ARG 754 n 76 ARG 754 A ARG 755 n 77 ARG 755 A GLN 756 n 78 GLN 756 A LYS 757 n 79 LYS 757 A n 1 -2 B GLY -1 n 2 GLY -1 B SER 0 n 3 SER 0 B MSE 1 n 4 MSE 1 B GLU 2 n 5 GLU 2 B ARG 3 n 6 ARG 3 B ILE 4 n 7 ILE 4 B LYS 5 n 8 LYS 5 B GLU 6 n 9 GLU 6 B LEU 7 n 10 LEU 7 B ARG 8 n 11 ARG 8 B ASN 9 n 12 ASN 9 B LEU 10 n 13 LEU 10 B MSE 11 n 14 MSE 11 B SER 12 n 15 SER 12 B GLN 13 n 16 GLN 13 B SER 14 n 17 SER 14 B ARG 15 n 18 ARG 15 B THR 16 n 19 THR 16 B ARG 17 n 20 ARG 17 B GLU 18 n 21 GLU 18 B ILE 19 n 22 ILE 19 B LEU 20 n 23 LEU 20 B THR 21 n 24 THR 21 B LYS 22 n 25 LYS 22 B THR 23 n 26 THR 23 B THR 24 n 27 THR 24 B VAL 25 n 28 VAL 25 B ASP 26 n 29 ASP 26 B HIS 27 n 30 HIS 27 B MSE 28 n 31 MSE 28 B ALA 29 n 32 ALA 29 B ILE 30 n 33 ILE 30 B ILE 31 n 34 ILE 31 B LYS 32 n 35 LYS 32 B LYS 33 n 36 LYS 33 B TYR 34 n 37 TYR 34 B THR 35 n 38 THR 35 B n 39 36 B n 40 37 B n 1 679 C n 2 680 C n 3 681 C n 4 682 C n 5 683 C GLU 684 n 6 GLU 684 C ASP 685 n 7 ASP 685 C GLU 686 n 8 GLU 686 C GLN 687 n 9 GLN 687 C MSE 688 n 10 MSE 688 C TYR 689 n 11 TYR 689 C GLN 690 n 12 GLN 690 C ARG 691 n 13 ARG 691 C CYS 692 n 14 CYS 692 C CYS 693 n 15 CYS 693 C ASN 694 n 16 ASN 694 C LEU 695 n 17 LEU 695 C PHE 696 n 18 PHE 696 C GLU 697 n 19 GLU 697 C LYS 698 n 20 LYS 698 C PHE 699 n 21 PHE 699 C PHE 700 n 22 PHE 700 C PRO 701 n 23 PRO 701 C SER 702 n 24 SER 702 C SER 703 n 25 SER 703 C SER 704 n 26 SER 704 C TYR 705 n 27 TYR 705 C ARG 706 n 28 ARG 706 C ARG 707 n 29 ARG 707 C PRO 708 n 30 PRO 708 C VAL 709 n 31 VAL 709 C GLY 710 n 32 GLY 710 C ILE 711 n 33 ILE 711 C SER 712 n 34 SER 712 C SER 713 n 35 SER 713 C MSE 714 n 36 MSE 714 C VAL 715 n 37 VAL 715 C GLU 716 n 38 GLU 716 C ALA 717 n 39 ALA 717 C MSE 718 n 40 MSE 718 C VAL 719 n 41 VAL 719 C SER 720 n 42 SER 720 C ARG 721 n 43 ARG 721 C ALA 722 n 44 ALA 722 C ARG 723 n 45 ARG 723 C ILE 724 n 46 ILE 724 C ASP 725 n 47 ASP 725 C ALA 726 n 48 ALA 726 C ARG 727 n 49 ARG 727 C ILE 728 n 50 ILE 728 C ASP 729 n 51 ASP 729 C PHE 730 n 52 PHE 730 C GLU 731 n 53 GLU 731 C SER 732 n 54 SER 732 C GLY 733 n 55 GLY 733 C ARG 734 n 56 ARG 734 C ILE 735 n 57 ILE 735 C LYS 736 n 58 LYS 736 C LYS 737 n 59 LYS 737 C GLU 738 n 60 GLU 738 C GLU 739 n 61 GLU 739 C PHE 740 n 62 PHE 740 C THR 741 n 63 THR 741 C GLU 742 n 64 GLU 742 C ILE 743 n 65 ILE 743 C MSE 744 n 66 MSE 744 C LYS 745 n 67 LYS 745 C ILE 746 n 68 ILE 746 C CYS 747 n 69 CYS 747 C SER 748 n 70 SER 748 C THR 749 n 71 THR 749 C ILE 750 n 72 ILE 750 C GLU 751 n 73 GLU 751 C GLU 752 n 74 GLU 752 C LEU 753 n 75 LEU 753 C ARG 754 n 76 ARG 754 C n 77 755 C n 78 756 C n 79 757 C n 1 -2 D GLY -1 n 2 GLY -1 D SER 0 n 3 SER 0 D MSE 1 n 4 MSE 1 D GLU 2 n 5 GLU 2 D ARG 3 n 6 ARG 3 D ILE 4 n 7 ILE 4 D LYS 5 n 8 LYS 5 D GLU 6 n 9 GLU 6 D LEU 7 n 10 LEU 7 D ARG 8 n 11 ARG 8 D ASN 9 n 12 ASN 9 D LEU 10 n 13 LEU 10 D MSE 11 n 14 MSE 11 D SER 12 n 15 SER 12 D GLN 13 n 16 GLN 13 D SER 14 n 17 SER 14 D ARG 15 n 18 ARG 15 D THR 16 n 19 THR 16 D ARG 17 n 20 ARG 17 D GLU 18 n 21 GLU 18 D ILE 19 n 22 ILE 19 D LEU 20 n 23 LEU 20 D THR 21 n 24 THR 21 D LYS 22 n 25 LYS 22 D THR 23 n 26 THR 23 D THR 24 n 27 THR 24 D VAL 25 n 28 VAL 25 D ASP 26 n 29 ASP 26 D HIS 27 n 30 HIS 27 D MSE 28 n 31 MSE 28 D ALA 29 n 32 ALA 29 D ILE 30 n 33 ILE 30 D ILE 31 n 34 ILE 31 D LYS 32 n 35 LYS 32 D LYS 33 n 36 LYS 33 D TYR 34 n 37 TYR 34 D THR 35 n 38 THR 35 D n 39 36 D n 40 37 D author_and_software_defined_assembly PISA 2 dimeric author_and_software_defined_assembly PISA 2 dimeric 2800 -24 7250 3100 -27 6820 A MSE 688 SELENOMETHIONINE A MSE 10 MET A MSE 714 SELENOMETHIONINE A MSE 36 MET A MSE 718 SELENOMETHIONINE A MSE 40 MET A MSE 744 SELENOMETHIONINE A MSE 66 MET B MSE 1 SELENOMETHIONINE B MSE 4 MET B MSE 11 SELENOMETHIONINE B MSE 14 MET B MSE 28 SELENOMETHIONINE B MSE 31 MET C MSE 688 SELENOMETHIONINE C MSE 10 MET C MSE 714 SELENOMETHIONINE C MSE 36 MET C MSE 718 SELENOMETHIONINE C MSE 40 MET C MSE 744 SELENOMETHIONINE C MSE 66 MET D MSE 1 SELENOMETHIONINE D MSE 4 MET D MSE 11 SELENOMETHIONINE D MSE 14 MET D MSE 28 SELENOMETHIONINE D MSE 31 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A GLN 679 A GLN 1 1 Y 1 A ARG 680 A ARG 2 1 Y 1 A GLY 681 A GLY 3 1 Y 1 A VAL 682 A VAL 4 1 Y 1 A LEU 683 A LEU 5 1 Y 1 A GLU 684 A GLU 6 1 Y 1 B GLY -2 B GLY 1 1 Y 1 B SER 36 B SER 39 1 Y 1 B GLY 37 B GLY 40 1 Y 1 C GLN 679 C GLN 1 1 Y 1 C ARG 680 C ARG 2 1 Y 1 C GLY 681 C GLY 3 1 Y 1 C VAL 682 C VAL 4 1 Y 1 C LEU 683 C LEU 5 1 Y 1 C ARG 755 C ARG 77 1 Y 1 C GLN 756 C GLN 78 1 Y 1 C LYS 757 C LYS 79 1 Y 1 D GLY -2 D GLY 1 1 Y 1 D SER 36 D SER 39 1 Y 1 D GLY 37 D GLY 40 1 Y 1 A GLU 686 -86.47 33.24 1 A GLN 756 178.74 153.21 1 B LYS 33 -64.66 2.48 1 B TYR 34 -140.87 24.65 1 C ARG 706 -50.87 107.01 49.199 5.70 0.00 7.10 -3.97 0.00 1.55 0.939 0.922 0.27164 0.2324 0.23452 2.10 20.00 633 12352 12352 4.9 100.00 8.532 0.219 RANDOM 1 THROUGHOUT 0.0 MAD 0.299 0.223 0.80 0.80 1.20 MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 2.10 20.00 33 1830 0 0 1797 0.022 0.022 1815 2.066 1.975 2411 7.115 5.000 214 35.731 22.184 87 21.270 15.000 393 22.698 15.000 25 0.138 0.200 266 0.007 0.020 1307 0.271 0.200 880 0.314 0.200 1274 0.213 0.200 62 0.224 0.200 36 0.174 0.200 2 1.593 1.500 1135 2.259 2.000 1764 3.984 3.000 766 5.516 4.500 647 0.297 0.306 2.154 43 841 20 100.00 2.1 50 2ZTT 13052 13052 0 0 0.049 1 20.5 5.6 92.9 0.131 2.1 2.18 85.6 refinement REFMAC 5.2.0019 data collection HKL-2000 data reduction HKL-2000 data scaling SCALEPACK phasing SOLVE RNA-directed RNA polymerase catalytic subunit (E.C.2.7.7.48), Polymerase basic protein 2 Crystal Structure of RNA polymerase PB1-PB2 subunits from Influenza A Virus 1 N N 2 N N 1 N N 2 N N 3 N N 3 N N 3 N N 3 N N A GLU 686 A GLU 8 HELX_P A PHE 700 A PHE 22 1 1 15 A SER 713 A SER 35 HELX_P A SER 732 A SER 54 1 2 20 A LYS 736 A LYS 58 HELX_P A ARG 755 A ARG 77 1 3 20 B GLY -1 B GLY 2 HELX_P B MSE 11 B MSE 14 1 4 13 B GLN 13 B GLN 16 HELX_P B THR 23 B THR 26 1 5 11 B THR 24 B THR 27 HELX_P B LYS 33 B LYS 36 1 6 10 C ASP 685 C ASP 7 HELX_P C PHE 700 C PHE 22 1 7 16 C SER 713 C SER 35 HELX_P C SER 732 C SER 54 1 8 20 C LYS 736 C LYS 58 HELX_P C LEU 753 C LEU 75 1 9 18 D GLY -1 D GLY 2 HELX_P D SER 12 D SER 15 1 10 14 D GLN 13 D GLN 16 HELX_P D THR 23 D THR 26 1 11 11 D THR 24 D THR 27 HELX_P D LYS 32 D LYS 35 1 12 9 covale 1.339 A GLN 687 A C GLN 9 1_555 A MSE 688 A N MSE 10 1_555 covale 1.340 A MSE 688 A C MSE 10 1_555 A TYR 689 A N TYR 11 1_555 covale 1.323 A SER 713 A C SER 35 1_555 A MSE 714 A N MSE 36 1_555 covale 1.343 A MSE 714 A C MSE 36 1_555 A VAL 715 A N VAL 37 1_555 covale 1.319 A ALA 717 A C ALA 39 1_555 A MSE 718 A N MSE 40 1_555 covale 1.317 A MSE 718 A C MSE 40 1_555 A VAL 719 A N VAL 41 1_555 covale 1.299 A ILE 743 A C ILE 65 1_555 A MSE 744 A N MSE 66 1_555 covale 1.322 A MSE 744 A C MSE 66 1_555 A LYS 745 A N LYS 67 1_555 covale 1.332 B SER 0 B C SER 3 1_555 B MSE 1 B N MSE 4 1_555 covale 1.341 B MSE 1 B C MSE 4 1_555 B GLU 2 B N GLU 5 1_555 covale 1.337 B LEU 10 B C LEU 13 1_555 B MSE 11 B N MSE 14 1_555 covale 1.344 B MSE 11 B C MSE 14 1_555 B SER 12 B N SER 15 1_555 covale 1.323 B HIS 27 B C HIS 30 1_555 B MSE 28 B N MSE 31 1_555 covale 1.323 B MSE 28 B C MSE 31 1_555 B ALA 29 B N ALA 32 1_555 covale 1.337 C GLN 687 C C GLN 9 1_555 C MSE 688 C N MSE 10 1_555 covale 1.336 C MSE 688 C C MSE 10 1_555 C TYR 689 C N TYR 11 1_555 covale 1.316 C SER 713 C C SER 35 1_555 C MSE 714 C N MSE 36 1_555 covale 1.330 C MSE 714 C C MSE 36 1_555 C VAL 715 C N VAL 37 1_555 covale 1.331 C ALA 717 C C ALA 39 1_555 C MSE 718 C N MSE 40 1_555 covale 1.343 C MSE 718 C C MSE 40 1_555 C VAL 719 C N VAL 41 1_555 covale 1.329 C ILE 743 C C ILE 65 1_555 C MSE 744 C N MSE 66 1_555 covale 1.356 C MSE 744 C C MSE 66 1_555 C LYS 745 C N LYS 67 1_555 covale 1.334 D SER 0 D C SER 3 1_555 D MSE 1 D N MSE 4 1_555 covale 1.342 D MSE 1 D C MSE 4 1_555 D GLU 2 D N GLU 5 1_555 covale 1.330 D LEU 10 D C LEU 13 1_555 D MSE 11 D N MSE 14 1_555 covale 1.355 D MSE 11 D C MSE 14 1_555 D SER 12 D N SER 15 1_555 covale 1.318 D HIS 27 D C HIS 30 1_555 D MSE 28 D N MSE 31 1_555 covale 1.329 D MSE 28 D C MSE 31 1_555 D ALA 29 D N ALA 32 1_555 TRANSFERASE Influenza virus, RNA polymerase, PB1-PB2 complex form, Nucleotide-binding, Nucleotidyltransferase, Nucleus, RNA replication, RNA-directed RNA polymerase, Transferase, Mitochondrion, mRNA capping, mRNA processing, Virion RDRP_I34A1 UNP 1 679 P03431 QRGVLEDEQMYQRCCNLFEKFFPSSSYRRPVGISSMVEAMVSRARIDARIDFESGRIKKEEFTEIMKICSTIEELRRQK PB2_I34A1 UNP 2 1 P03428 MERIKELRNLMSQSRTREILTKTTVDHMAIIKKYTSG 679 757 2ZTT 679 757 P03431 A 1 1 79 1 37 2ZTT 1 37 P03428 B 2 4 40 679 757 2ZTT 679 757 P03431 C 1 1 79 1 37 2ZTT 1 37 P03428 D 2 4 40 2 EXPRESSION TAG GLY -2 2ZTT B P03428 UNP 1 2 EXPRESSION TAG GLY -1 2ZTT B P03428 UNP 2 2 EXPRESSION TAG SER 0 2ZTT B P03428 UNP 3 4 EXPRESSION TAG GLY -2 2ZTT D P03428 UNP 1 4 EXPRESSION TAG GLY -1 2ZTT D P03428 UNP 2 4 EXPRESSION TAG SER 0 2ZTT D P03428 UNP 3 4 P 1 21 1