0.013091
0.000000
0.006275
0.000000
0.015466
0.000000
0.000000
0.000000
0.028261
0.00000
0.00000
0.00000
Lee, C.C.
Wang, A.H.-J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
115.61
90.00
76.390
64.660
39.240
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
H2 S2 Zn
131.555
zinc(II)hydrogensulfide
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
S
N
89
N
ZN
N
90
N
S
N
91
N
H
N
92
N
H
N
93
N
N
N
94
S
C
N
95
N
C
N
96
N
O
N
97
N
C
N
98
N
C
N
99
N
C
N
100
N
O
N
101
N
N
N
102
N
O
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
S
C
N
115
N
C
N
116
N
O
N
117
N
C
N
118
N
C
N
119
N
C
N
120
N
O
N
121
N
O
N
122
N
O
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
N
N
133
N
C
N
134
N
C
N
135
N
O
N
136
N
O
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
N
N
143
S
C
N
144
N
C
N
145
N
O
N
146
N
C
Y
147
N
C
Y
148
N
N
Y
149
N
C
Y
150
N
C
Y
151
N
N
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
O
N
164
N
H
N
165
N
H
N
166
N
N
N
167
S
C
N
168
N
C
N
169
N
O
N
170
S
C
N
171
N
C
N
172
N
C
N
173
N
C
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
N
N
189
S
C
N
190
N
C
N
191
N
O
N
192
N
C
N
193
N
C
N
194
N
C
N
195
N
C
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
O
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
C
N
218
N
N
N
219
N
O
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
N
N
236
S
C
N
237
N
C
N
238
N
O
N
239
N
C
N
240
N
C
N
241
N
S
N
242
N
C
N
243
N
O
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
N
N
256
S
C
N
257
N
C
N
258
N
O
N
259
N
C
Y
260
N
C
Y
261
N
C
Y
262
N
C
Y
263
N
C
Y
264
N
C
Y
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
N
N
279
S
C
N
280
N
C
N
281
N
O
N
282
N
C
N
283
N
C
N
284
N
C
N
285
N
O
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
N
C
N
300
N
O
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
R
C
N
314
N
O
N
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
N
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
N
364
N
O
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
N
382
N
C
N
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
doub
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
Y
144
N
sing
Y
145
N
doub
Y
146
N
doub
N
147
N
sing
Y
148
N
sing
N
149
N
sing
Y
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
doub
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
Y
252
N
doub
Y
253
N
sing
Y
254
N
sing
N
255
N
sing
Y
256
N
doub
N
257
N
sing
Y
258
N
doub
N
259
N
sing
Y
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
doub
Y
326
N
sing
Y
327
N
sing
N
328
N
sing
Y
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
doub
N
333
N
sing
Y
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
Y
349
N
doub
Y
350
N
sing
Y
351
N
sing
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
284
7646
7655
10.1074/jbc.M807947200
19144641
Structural Basis of Inhibition Specificities of 3C and 3C-like Proteases by Zinc-coordinating and Peptidomimetic Compounds
2009
10.2210/pdb2ztx/pdb
pdb_00002ztx
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2005-11-01
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
1.0
BL-6A
Photon Factory
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-6A
20298.293
3C proteinase
3.4.22.28
1
man
polymer
131.555
zinc(II)hydrogensulfide
1
syn
non-polymer
18.015
water
208
nat
water
no
no
GPAFEFAVAMMKRNSSTVKTEYGEFTMLGIYDRWAVLPRHAKPGPTILMNDQEVGVLDAKELVDKDGTNLELTLLKLNRN
EKFRDIRGFLAKEEVEVNEAVLAINTSKFPNMYIPVGQVTEYGFLNLGGTPTKRMLMYNFPTRAGQCGGVLMSTGKVLGI
HVGGNGHQGFSAALLKHYFNDEQ
GPAFEFAVAMMKRNSSTVKTEYGEFTMLGIYDRWAVLPRHAKPGPTILMNDQEVGVLDAKELVDKDGTNLELTLLKLNRN
EKFRDIRGFLAKEEVEVNEAVLAINTSKFPNMYIPVGQVTEYGFLNLGGTPTKRMLMYNFPTRAGQCGGVLMSTGKVLGI
HVGGNGHQGFSAALLKHYFNDEQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
12072
Human coxsackievirus B3
562
Escherichia coli
plasmid
pET16b
1
2.15
42.86
VAPOR DIFFUSION, SITTING DROP
8.0
24% PEG 4000, 0.1M Tris-HCl, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 286K
286
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Atomic model
Database references
Derived calculations
Non-polymer description
Structure summary
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2009-01-13
1
1
2011-07-13
1
2
2023-11-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
PDBJ
Y
PDBJ
2008-10-10
REL
REL
DTZ
zinc(II)hydrogensulfide
HOH
water
1CQQ
PDB ENTRY 1CQQ
PDB
experimental model
DTZ
501
2
DTZ
DTZ
501
A
HOH
201
3
HOH
HOH
201
A
HOH
202
3
HOH
HOH
202
A
HOH
203
3
HOH
HOH
203
A
HOH
204
3
HOH
HOH
204
A
HOH
205
3
HOH
HOH
205
A
HOH
206
3
HOH
HOH
206
A
HOH
207
3
HOH
HOH
207
A
HOH
208
3
HOH
HOH
208
A
HOH
209
3
HOH
HOH
209
A
HOH
210
3
HOH
HOH
210
A
HOH
211
3
HOH
HOH
211
A
HOH
212
3
HOH
HOH
212
A
HOH
213
3
HOH
HOH
213
A
HOH
214
3
HOH
HOH
214
A
HOH
215
3
HOH
HOH
215
A
HOH
216
3
HOH
HOH
216
A
HOH
217
3
HOH
HOH
217
A
HOH
218
3
HOH
HOH
218
A
HOH
219
3
HOH
HOH
219
A
HOH
220
3
HOH
HOH
220
A
HOH
221
3
HOH
HOH
221
A
HOH
222
3
HOH
HOH
222
A
HOH
223
3
HOH
HOH
223
A
HOH
224
3
HOH
HOH
224
A
HOH
225
3
HOH
HOH
225
A
HOH
226
3
HOH
HOH
226
A
HOH
227
3
HOH
HOH
227
A
HOH
228
3
HOH
HOH
228
A
HOH
229
3
HOH
HOH
229
A
HOH
230
3
HOH
HOH
230
A
HOH
231
3
HOH
HOH
231
A
HOH
232
3
HOH
HOH
232
A
HOH
233
3
HOH
HOH
233
A
HOH
234
3
HOH
HOH
234
A
HOH
235
3
HOH
HOH
235
A
HOH
236
3
HOH
HOH
236
A
HOH
237
3
HOH
HOH
237
A
HOH
238
3
HOH
HOH
238
A
HOH
239
3
HOH
HOH
239
A
HOH
240
3
HOH
HOH
240
A
HOH
241
3
HOH
HOH
241
A
HOH
242
3
HOH
HOH
242
A
HOH
243
3
HOH
HOH
243
A
HOH
244
3
HOH
HOH
244
A
HOH
245
3
HOH
HOH
245
A
HOH
246
3
HOH
HOH
246
A
HOH
247
3
HOH
HOH
247
A
HOH
248
3
HOH
HOH
248
A
HOH
249
3
HOH
HOH
249
A
HOH
250
3
HOH
HOH
250
A
HOH
251
3
HOH
HOH
251
A
HOH
252
3
HOH
HOH
252
A
HOH
253
3
HOH
HOH
253
A
HOH
254
3
HOH
HOH
254
A
HOH
255
3
HOH
HOH
255
A
HOH
256
3
HOH
HOH
256
A
HOH
257
3
HOH
HOH
257
A
HOH
258
3
HOH
HOH
258
A
HOH
259
3
HOH
HOH
259
A
HOH
260
3
HOH
HOH
260
A
HOH
261
3
HOH
HOH
261
A
HOH
262
3
HOH
HOH
262
A
HOH
263
3
HOH
HOH
263
A
HOH
264
3
HOH
HOH
264
A
HOH
265
3
HOH
HOH
265
A
HOH
266
3
HOH
HOH
266
A
HOH
267
3
HOH
HOH
267
A
HOH
268
3
HOH
HOH
268
A
HOH
269
3
HOH
HOH
269
A
HOH
270
3
HOH
HOH
270
A
HOH
271
3
HOH
HOH
271
A
HOH
272
3
HOH
HOH
272
A
HOH
273
3
HOH
HOH
273
A
HOH
274
3
HOH
HOH
274
A
HOH
275
3
HOH
HOH
275
A
HOH
276
3
HOH
HOH
276
A
HOH
277
3
HOH
HOH
277
A
HOH
278
3
HOH
HOH
278
A
HOH
279
3
HOH
HOH
279
A
HOH
280
3
HOH
HOH
280
A
HOH
281
3
HOH
HOH
281
A
HOH
282
3
HOH
HOH
282
A
HOH
283
3
HOH
HOH
283
A
HOH
284
3
HOH
HOH
284
A
HOH
285
3
HOH
HOH
285
A
HOH
286
3
HOH
HOH
286
A
HOH
287
3
HOH
HOH
287
A
HOH
288
3
HOH
HOH
288
A
HOH
289
3
HOH
HOH
289
A
HOH
290
3
HOH
HOH
290
A
HOH
291
3
HOH
HOH
291
A
HOH
292
3
HOH
HOH
292
A
HOH
293
3
HOH
HOH
293
A
HOH
294
3
HOH
HOH
294
A
HOH
295
3
HOH
HOH
295
A
HOH
296
3
HOH
HOH
296
A
HOH
297
3
HOH
HOH
297
A
HOH
298
3
HOH
HOH
298
A
HOH
299
3
HOH
HOH
299
A
HOH
300
3
HOH
HOH
300
A
HOH
301
3
HOH
HOH
301
A
HOH
302
3
HOH
HOH
302
A
HOH
303
3
HOH
HOH
303
A
HOH
304
3
HOH
HOH
304
A
HOH
305
3
HOH
HOH
305
A
HOH
306
3
HOH
HOH
306
A
HOH
307
3
HOH
HOH
307
A
HOH
308
3
HOH
HOH
308
A
HOH
309
3
HOH
HOH
309
A
HOH
313
3
HOH
HOH
313
A
HOH
314
3
HOH
HOH
314
A
HOH
315
3
HOH
HOH
315
A
HOH
316
3
HOH
HOH
316
A
HOH
317
3
HOH
HOH
317
A
HOH
318
3
HOH
HOH
318
A
HOH
319
3
HOH
HOH
319
A
HOH
320
3
HOH
HOH
320
A
HOH
321
3
HOH
HOH
321
A
HOH
322
3
HOH
HOH
322
A
HOH
323
3
HOH
HOH
323
A
HOH
324
3
HOH
HOH
324
A
HOH
325
3
HOH
HOH
325
A
HOH
326
3
HOH
HOH
326
A
HOH
327
3
HOH
HOH
327
A
HOH
328
3
HOH
HOH
328
A
HOH
329
3
HOH
HOH
329
A
HOH
330
3
HOH
HOH
330
A
HOH
331
3
HOH
HOH
331
A
HOH
333
3
HOH
HOH
333
A
HOH
334
3
HOH
HOH
334
A
HOH
335
3
HOH
HOH
335
A
HOH
336
3
HOH
HOH
336
A
HOH
337
3
HOH
HOH
337
A
HOH
338
3
HOH
HOH
338
A
HOH
339
3
HOH
HOH
339
A
HOH
340
3
HOH
HOH
340
A
HOH
341
3
HOH
HOH
341
A
HOH
342
3
HOH
HOH
342
A
HOH
343
3
HOH
HOH
343
A
HOH
344
3
HOH
HOH
344
A
HOH
345
3
HOH
HOH
345
A
HOH
346
3
HOH
HOH
346
A
HOH
347
3
HOH
HOH
347
A
HOH
348
3
HOH
HOH
348
A
HOH
349
3
HOH
HOH
349
A
HOH
350
3
HOH
HOH
350
A
HOH
351
3
HOH
HOH
351
A
HOH
352
3
HOH
HOH
352
A
HOH
353
3
HOH
HOH
353
A
HOH
354
3
HOH
HOH
354
A
HOH
355
3
HOH
HOH
355
A
HOH
356
3
HOH
HOH
356
A
HOH
357
3
HOH
HOH
357
A
HOH
358
3
HOH
HOH
358
A
HOH
359
3
HOH
HOH
359
A
HOH
360
3
HOH
HOH
360
A
HOH
361
3
HOH
HOH
361
A
HOH
362
3
HOH
HOH
362
A
HOH
363
3
HOH
HOH
363
A
HOH
364
3
HOH
HOH
364
A
HOH
365
3
HOH
HOH
365
A
HOH
366
3
HOH
HOH
366
A
HOH
367
3
HOH
HOH
367
A
HOH
368
3
HOH
HOH
368
A
HOH
369
3
HOH
HOH
369
A
HOH
370
3
HOH
HOH
370
A
HOH
371
3
HOH
HOH
371
A
HOH
372
3
HOH
HOH
372
A
HOH
373
3
HOH
HOH
373
A
HOH
374
3
HOH
HOH
374
A
HOH
375
3
HOH
HOH
375
A
HOH
376
3
HOH
HOH
376
A
HOH
377
3
HOH
HOH
377
A
HOH
379
3
HOH
HOH
379
A
HOH
380
3
HOH
HOH
380
A
HOH
381
3
HOH
HOH
381
A
HOH
383
3
HOH
HOH
383
A
HOH
384
3
HOH
HOH
384
A
HOH
385
3
HOH
HOH
385
A
HOH
386
3
HOH
HOH
386
A
HOH
387
3
HOH
HOH
387
A
HOH
388
3
HOH
HOH
388
A
HOH
391
3
HOH
HOH
391
A
HOH
392
3
HOH
HOH
392
A
HOH
393
3
HOH
HOH
393
A
HOH
394
3
HOH
HOH
394
A
HOH
396
3
HOH
HOH
396
A
HOH
397
3
HOH
HOH
397
A
HOH
398
3
HOH
HOH
398
A
HOH
399
3
HOH
HOH
399
A
HOH
400
3
HOH
HOH
400
A
HOH
401
3
HOH
HOH
401
A
HOH
402
3
HOH
HOH
402
A
HOH
403
3
HOH
HOH
403
A
HOH
404
3
HOH
HOH
404
A
HOH
405
3
HOH
HOH
405
A
HOH
406
3
HOH
HOH
406
A
HOH
408
3
HOH
HOH
408
A
HOH
409
3
HOH
HOH
409
A
HOH
410
3
HOH
HOH
410
A
HOH
411
3
HOH
HOH
411
A
HOH
412
3
HOH
HOH
412
A
HOH
413
3
HOH
HOH
413
A
HOH
414
3
HOH
HOH
414
A
HOH
415
3
HOH
HOH
415
A
HOH
416
3
HOH
HOH
416
A
HOH
417
3
HOH
HOH
417
A
HOH
418
3
HOH
HOH
418
A
GLY
1
n
1
GLY
1
A
PRO
2
n
2
PRO
2
A
ALA
3
n
3
ALA
3
A
PHE
4
n
4
PHE
4
A
GLU
5
n
5
GLU
5
A
PHE
6
n
6
PHE
6
A
ALA
7
n
7
ALA
7
A
VAL
8
n
8
VAL
8
A
ALA
9
n
9
ALA
9
A
MET
10
n
10
MET
10
A
MET
11
n
11
MET
11
A
LYS
12
n
12
LYS
12
A
ARG
13
n
13
ARG
13
A
ASN
14
n
14
ASN
14
A
SER
15
n
15
SER
15
A
SER
16
n
16
SER
16
A
THR
17
n
17
THR
17
A
VAL
18
n
18
VAL
18
A
LYS
19
n
19
LYS
19
A
THR
20
n
20
THR
20
A
GLU
21
n
21
GLU
21
A
TYR
22
n
22
TYR
22
A
GLY
23
n
23
GLY
23
A
GLU
24
n
24
GLU
24
A
PHE
25
n
25
PHE
25
A
THR
26
n
26
THR
26
A
MET
27
n
27
MET
27
A
LEU
28
n
28
LEU
28
A
GLY
29
n
29
GLY
29
A
ILE
30
n
30
ILE
30
A
TYR
31
n
31
TYR
31
A
ASP
32
n
32
ASP
32
A
ARG
33
n
33
ARG
33
A
TRP
34
n
34
TRP
34
A
ALA
35
n
35
ALA
35
A
VAL
36
n
36
VAL
36
A
LEU
37
n
37
LEU
37
A
PRO
38
n
38
PRO
38
A
ARG
39
n
39
ARG
39
A
HIS
40
n
40
HIS
40
A
ALA
41
n
41
ALA
41
A
LYS
42
n
42
LYS
42
A
PRO
43
n
43
PRO
43
A
GLY
44
n
44
GLY
44
A
PRO
45
n
45
PRO
45
A
THR
46
n
46
THR
46
A
ILE
47
n
47
ILE
47
A
LEU
48
n
48
LEU
48
A
MET
49
n
49
MET
49
A
ASN
50
n
50
ASN
50
A
ASP
51
n
51
ASP
51
A
GLN
52
n
52
GLN
52
A
GLU
53
n
53
GLU
53
A
VAL
54
n
54
VAL
54
A
GLY
55
n
55
GLY
55
A
VAL
56
n
56
VAL
56
A
LEU
57
n
57
LEU
57
A
ASP
58
n
58
ASP
58
A
ALA
59
n
59
ALA
59
A
LYS
60
n
60
LYS
60
A
GLU
61
n
61
GLU
61
A
LEU
62
n
62
LEU
62
A
VAL
63
n
63
VAL
63
A
ASP
64
n
64
ASP
64
A
LYS
65
n
65
LYS
65
A
ASP
66
n
66
ASP
66
A
GLY
67
n
67
GLY
67
A
THR
68
n
68
THR
68
A
ASN
69
n
69
ASN
69
A
LEU
70
n
70
LEU
70
A
GLU
71
n
71
GLU
71
A
LEU
72
n
72
LEU
72
A
THR
73
n
73
THR
73
A
LEU
74
n
74
LEU
74
A
LEU
75
n
75
LEU
75
A
LYS
76
n
76
LYS
76
A
LEU
77
n
77
LEU
77
A
ASN
78
n
78
ASN
78
A
ARG
79
n
79
ARG
79
A
ASN
80
n
80
ASN
80
A
GLU
81
n
81
GLU
81
A
LYS
82
n
82
LYS
82
A
PHE
83
n
83
PHE
83
A
ARG
84
n
84
ARG
84
A
ASP
85
n
85
ASP
85
A
ILE
86
n
86
ILE
86
A
ARG
87
n
87
ARG
87
A
GLY
88
n
88
GLY
88
A
PHE
89
n
89
PHE
89
A
LEU
90
n
90
LEU
90
A
ALA
91
n
91
ALA
91
A
LYS
92
n
92
LYS
92
A
GLU
93
n
93
GLU
93
A
GLU
94
n
94
GLU
94
A
VAL
95
n
95
VAL
95
A
GLU
96
n
96
GLU
96
A
VAL
97
n
97
VAL
97
A
ASN
98
n
98
ASN
98
A
GLU
99
n
99
GLU
99
A
ALA
100
n
100
ALA
100
A
VAL
101
n
101
VAL
101
A
LEU
102
n
102
LEU
102
A
ALA
103
n
103
ALA
103
A
ILE
104
n
104
ILE
104
A
ASN
105
n
105
ASN
105
A
THR
106
n
106
THR
106
A
SER
107
n
107
SER
107
A
LYS
108
n
108
LYS
108
A
PHE
109
n
109
PHE
109
A
PRO
110
n
110
PRO
110
A
ASN
111
n
111
ASN
111
A
MET
112
n
112
MET
112
A
TYR
113
n
113
TYR
113
A
ILE
114
n
114
ILE
114
A
PRO
115
n
115
PRO
115
A
VAL
116
n
116
VAL
116
A
GLY
117
n
117
GLY
117
A
GLN
118
n
118
GLN
118
A
VAL
119
n
119
VAL
119
A
THR
120
n
120
THR
120
A
GLU
121
n
121
GLU
121
A
TYR
122
n
122
TYR
122
A
GLY
123
n
123
GLY
123
A
PHE
124
n
124
PHE
124
A
LEU
125
n
125
LEU
125
A
ASN
126
n
126
ASN
126
A
LEU
127
n
127
LEU
127
A
GLY
128
n
128
GLY
128
A
GLY
129
n
129
GLY
129
A
THR
130
n
130
THR
130
A
PRO
131
n
131
PRO
131
A
THR
132
n
132
THR
132
A
LYS
133
n
133
LYS
133
A
ARG
134
n
134
ARG
134
A
MET
135
n
135
MET
135
A
LEU
136
n
136
LEU
136
A
MET
137
n
137
MET
137
A
TYR
138
n
138
TYR
138
A
ASN
139
n
139
ASN
139
A
PHE
140
n
140
PHE
140
A
PRO
141
n
141
PRO
141
A
THR
142
n
142
THR
142
A
ARG
143
n
143
ARG
143
A
ALA
144
n
144
ALA
144
A
GLY
145
n
145
GLY
145
A
GLN
146
n
146
GLN
146
A
CYS
147
n
147
CYS
147
A
GLY
148
n
148
GLY
148
A
GLY
149
n
149
GLY
149
A
VAL
150
n
150
VAL
150
A
LEU
151
n
151
LEU
151
A
MET
152
n
152
MET
152
A
SER
153
n
153
SER
153
A
THR
154
n
154
THR
154
A
GLY
155
n
155
GLY
155
A
LYS
156
n
156
LYS
156
A
VAL
157
n
157
VAL
157
A
LEU
158
n
158
LEU
158
A
GLY
159
n
159
GLY
159
A
ILE
160
n
160
ILE
160
A
HIS
161
n
161
HIS
161
A
VAL
162
n
162
VAL
162
A
GLY
163
n
163
GLY
163
A
GLY
164
n
164
GLY
164
A
ASN
165
n
165
ASN
165
A
GLY
166
n
166
GLY
166
A
HIS
167
n
167
HIS
167
A
GLN
168
n
168
GLN
168
A
GLY
169
n
169
GLY
169
A
PHE
170
n
170
PHE
170
A
SER
171
n
171
SER
171
A
ALA
172
n
172
ALA
172
A
ALA
173
n
173
ALA
173
A
LEU
174
n
174
LEU
174
A
LEU
175
n
175
LEU
175
A
LYS
176
n
176
LYS
176
A
HIS
177
n
177
HIS
177
A
TYR
178
n
178
TYR
178
A
PHE
179
n
179
PHE
179
A
ASN
180
n
180
ASN
180
A
n
181
181
A
n
182
182
A
n
183
183
A
author_defined_assembly
1
monomeric
software_defined_assembly
PISA
2
dimeric
1810
-50
15410
A
HIS
40
A
NE2
HIS
40
1_555
A
DTZ
501
B
ZN
DTZ
1_555
A
DTZ
501
B
S1
DTZ
1_555
100.9
A
HIS
40
A
NE2
HIS
40
1_555
A
DTZ
501
B
ZN
DTZ
1_555
A
DTZ
501
B
S2
DTZ
1_555
111.8
A
DTZ
501
B
S1
DTZ
1_555
A
DTZ
501
B
ZN
DTZ
1_555
A
DTZ
501
B
S2
DTZ
1_555
103.1
A
HIS
40
A
NE2
HIS
40
1_555
A
DTZ
501
B
ZN
DTZ
1_555
A
CYS
147
A
SG
CYS
147
1_555
106.3
A
DTZ
501
B
S1
DTZ
1_555
A
DTZ
501
B
ZN
DTZ
1_555
A
CYS
147
A
SG
CYS
147
1_555
108.4
A
DTZ
501
B
S2
DTZ
1_555
A
DTZ
501
B
ZN
DTZ
1_555
A
CYS
147
A
SG
CYS
147
1_555
123.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_656
-x+1,y,-z+1
crystal symmetry operation
59.4287791201
0.0000000000
35.3849485836
A
N
SER
16
A
N
SER
16
A
O
MET
27
A
O
MET
27
A
N
ILE
30
A
N
ILE
30
A
O
TRP
34
A
O
TRP
34
A
N
LEU
37
A
N
LEU
37
A
O
THR
73
A
O
THR
73
A
O
LYS
76
A
O
LYS
76
A
N
LEU
57
A
N
LEU
57
A
O
GLN
52
A
O
GLN
52
A
N
MET
49
A
N
MET
49
A
O
LEU
48
A
O
LEU
48
A
N
LYS
19
A
N
LYS
19
A
N
LEU
102
A
N
LEU
102
A
O
ILE
114
A
O
ILE
114
A
N
LEU
127
A
N
LEU
127
A
O
THR
130
A
O
THR
130
A
N
TYR
138
A
N
TYR
138
A
O
GLY
169
A
O
GLY
169
A
O
PHE
170
A
O
PHE
170
A
N
GLY
163
A
N
GLY
163
A
O
LYS
156
A
O
LYS
156
A
N
SER
153
A
N
SER
153
A
O
MET
152
A
O
MET
152
A
N
VAL
101
A
N
VAL
101
1
A
HOH
415
C
HOH
1
A
ASP
181
A
ASP
181
1
Y
1
A
GLU
182
A
GLU
182
1
Y
1
A
GLN
183
A
GLN
183
1
Y
1
A
A
O
O
HOH
HOH
225
388
1.81
1
A
A
N
O
PHE
HOH
140
416
1.89
1
A
A
CG
O
MET
HOH
112
409
1.98
1
A
A
CB
O
MET
HOH
112
417
1.98
1
A
A
O
O
HOH
HOH
263
387
2.00
1
A
A
CB
O
PHE
HOH
140
416
2.01
1
A
A
O
O
HOH
HOH
292
402
2.02
1
A
A
C
O
ASN
HOH
139
416
2.03
1
A
A
O
O
HOH
HOH
335
370
2.05
1
A
A
N
O
GLY
HOH
1
347
2.06
1
A
A
O
O
HOH
HOH
319
324
2.09
1
A
A
N
O
GLY
HOH
1
346
2.10
1
A
A
O
O
HOH
HOH
226
369
2.12
1
A
A
CG
O
MET
HOH
112
417
2.12
1
A
A
OG1
O
THR
HOH
142
408
2.17
1
A
A
ND1
O
HIS
HOH
167
373
2.18
1
-10.59
1.60
110.90
100.31
A
A
A
CG1
CB
CG2
VAL
VAL
VAL
36
36
36
N
1
A
A
O
O
HOH
HOH
272
272
1.02
1_555
2_656
1
A
A
OD1
OD1
ASN
ASN
139
139
1.85
1_555
2_657
1
A
A
O
O
HOH
HOH
227
298
1.94
1_555
2_656
1
A
A
ND2
ND2
ASN
ASN
139
139
1.94
1_555
2_657
1
A
A
O
O
HOH
HOH
288
335
1.95
1_555
2_656
1
A
A
O
O
HOH
HOH
417
417
2.08
1_555
2_656
1
A
A
O
O
HOH
HOH
297
356
2.19
1_555
2_657
1
A
ASP
32
49.07
-123.59
1
A
LYS
42
38.14
60.57
1
A
ASP
51
73.86
-5.96
1
A
ASN
111
33.90
57.18
1
A
PRO
141
-64.74
70.82
67.29
31.840
14.99
-3.134
0.000
-4.069
2.890
0.000
0.245
0.249
0.197
0.207
0.200
1.720
24.98
815
18350
17728
4.400
96.6
1.00
1.00
RANDOM
1
Overall
THROUGHOUT
2
2
MOLECULAR REPLACEMENT
PDB ENTRY 1CQQ
Engh & Huber
60.775
1.720
24.98
208
1609
3
0
1398
0.018
2.070
1.72
50
2ZTX
18623
18549
1
0.059
1
21.4
4.1
99.6
0.387
1.72
1.78
3.1
1830
1
3.6
data collection
HKL-2000
refinement
CNS
data reduction
HKL-2000
data scaling
HKL-2000
phasing
CNS
Complex structure of CVB3 3C protease with EPDTC
1
N
N
2
N
N
3
N
N
A
GLY
1
A
GLY
1
HELX_P
A
ASN
14
A
ASN
14
1
1
14
A
HIS
40
A
HIS
40
HELX_P
A
LYS
42
A
LYS
42
5
2
3
A
ILE
86
A
ILE
86
HELX_P
A
LEU
90
A
LEU
90
5
3
5
A
LEU
175
A
LEU
175
HELX_P
A
ASN
180
A
ASN
180
5
4
6
metalc
2.044
A
HIS
40
A
NE2
HIS
40
1_555
A
DTZ
501
B
ZN
DTZ
1_555
metalc
2.305
A
CYS
147
A
SG
CYS
147
1_555
A
DTZ
501
B
ZN
DTZ
1_555
HYDROLASE/HYDROLASE INHIBITOR
protease-inhibitor complex, Hydrolase, Protease, Thiol protease, HYDROLASE-HYDROLASE INHIBITOR complex
Q90092_9ENTO
UNP
1
14
Q90092
GPAFEFAVAMMKRNSSTVKTEYGEFTMLGIYDRWAVLPRHAKPGPTILMNDQEVGVLDAKELVDKDGTNLELTLLKLNRN
EKFRDIRGFLAKEEVEVNEAVLAINTSKFPNMYIPVGQVTEYGFLNLGGTPTKRMLMYNFPTRAGQCGGVLMSTGKVLGI
HVGGNGHQGFSAALLKHYFNDEQ
14
196
2ZTX
1
183
Q90092
A
1
1
183
7
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
15
A
SER
15
A
THR
20
A
THR
20
A
GLY
23
A
GLY
23
A
TYR
31
A
TYR
31
A
TRP
34
A
TRP
34
A
PRO
38
A
PRO
38
A
ASN
69
A
ASN
69
A
LEU
77
A
LEU
77
A
GLN
52
A
GLN
52
A
VAL
63
A
VAL
63
A
THR
46
A
THR
46
A
MET
49
A
MET
49
A
SER
15
A
SER
15
A
THR
20
A
THR
20
A
VAL
97
A
VAL
97
A
ILE
104
A
ILE
104
A
MET
112
A
MET
112
A
LEU
127
A
LEU
127
A
THR
130
A
THR
130
A
TYR
138
A
TYR
138
A
GLY
169
A
GLY
169
A
ALA
173
A
ALA
173
A
LYS
156
A
LYS
156
A
GLY
164
A
GLY
164
A
VAL
150
A
VAL
150
A
SER
153
A
SER
153
A
VAL
97
A
VAL
97
A
ILE
104
A
ILE
104
BINDING SITE FOR RESIDUE DTZ A 501
A
DTZ
501
Software
5
A
PHE
25
A
PHE
25
5
1_555
A
HIS
40
A
HIS
40
5
1_555
A
CYS
147
A
CYS
147
5
1_555
A
HOH
321
C
HOH
5
1_555
A
HOH
401
C
HOH
5
1_555
5
C 1 2 1