0.013021 0.000000 0.006328 0.000000 0.015475 0.000000 0.000000 0.000000 0.028134 0.00000 0.00000 0.00000 Lee, C.C. Tsui, Y.C. Wang, A.H.-J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 115.92 90.00 76.800 64.620 39.520 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking C32 H49 N5 O7 615.761 N-[(benzyloxy)carbonyl]-3-[(2,2-dimethylpropanoyl)amino]-L-alanyl-N-[(1R)-4-oxo-1-{[(3S)-2-oxopyrrolidin-3-yl]methyl}pentyl]-L-leucinamide TG-0204998 peptide-like N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N C N 392 N O N 393 N O N 394 N C Y 395 N C Y 396 N C Y 397 N C Y 398 N C Y 399 N C Y 400 N C N 401 N N N 402 S C N 403 N C N 404 N N N 405 N C N 406 N C N 407 N O N 408 N O N 409 N C N 410 N C N 411 N C N 412 N C N 413 N N N 414 S C N 415 N C N 416 N O N 417 N C N 418 N C N 419 N C N 420 N C N 421 N N N 422 R C N 423 N C N 424 S C N 425 N C N 426 N C N 427 N O N 428 N N N 429 N C N 430 N C N 431 N C N 432 N C N 433 N C N 434 N O N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing Y 376 N doub Y 377 N sing Y 378 N sing Y 379 N doub N 380 N sing Y 381 N sing Y 382 N doub N 383 N sing N 384 N sing N 385 N doub N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N doub N 396 N sing N 397 N sing N 398 N sing N 399 N doub N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N doub N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N doub N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 284 7646 7655 10.1074/jbc.M807947200 19144641 Structural Basis of Inhibition Specificities of 3C and 3C-like Proteases by Zinc-coordinating and Peptidomimetic Compounds 2009 10.2210/pdb2zu3/pdb pdb_00002zu3 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2007-03-25 ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 1.0 BL12B2 SPring-8 SYNCHROTRON SPRING-8 BEAMLINE BL12B2 20298.293 3C proteinase 3.4.22.- 1 man polymer 615.761 N-[(benzyloxy)carbonyl]-3-[(2,2-dimethylpropanoyl)amino]-L-alanyl-N-[(1R)-4-oxo-1-{[(3S)-2-oxopyrrolidin-3-yl]methyl}pentyl]-L-leucinamide 1 syn non-polymer 18.015 water 199 nat water no no GPAFEFAVAMMKRNSSTVKTEYGEFTMLGIYDRWAVLPRHAKPGPTILMNDQEVGVLDAKELVDKDGTNLELTLLKLNRN EKFRDIRGFLAKEEVEVNEAVLAINTSKFPNMYIPVGQVTEYGFLNLGGTPTKRMLMYNFPTRAGQCGGVLMSTGKVLGI HVGGNGHQGFSAALLKHYFNDEQ GPAFEFAVAMMKRNSSTVKTEYGEFTMLGIYDRWAVLPRHAKPGPTILMNDQEVGVLDAKELVDKDGTNLELTLLKLNRN EKFRDIRGFLAKEEVEVNEAVLAINTSKFPNMYIPVGQVTEYGFLNLGGTPTKRMLMYNFPTRAGQCGGVLMSTGKVLGI HVGGNGHQGFSAALLKHYFNDEQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n B3 sample 12072 Human coxsackievirus 562 Escherichia coli plasmid pET16b 1 2.17 43.39 VAPOR DIFFUSION, SITTING DROP 8.0 24~30% PEG 4000, 0.2M magnesium chloride, 0.1M Tris-HCl , pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 286K 286 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_site repository Initial release Atomic model Database references Derived calculations Non-polymer description Source and taxonomy Structure summary Version format compliance Structure summary Refinement description Data collection Database references Derived calculations Refinement description 1 0 2009-01-13 1 1 2011-07-13 1 2 2012-12-12 1 3 2014-04-16 1 4 2023-11-01 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id PDBJ Y PDBJ 2008-10-12 REL REL ZU3 N-[(benzyloxy)carbonyl]-3-[(2,2-dimethylpropanoyl)amino]-L-alanyl-N-[(1R)-4-oxo-1-{[(3S)-2-oxopyrrolidin-3-yl]methyl}pentyl]-L-leucinamide HOH water THE UNBOUND VERSION OF THE INHIBITOR HAS A DOUBLE BOND BETWEEN ATOMS C63 AND C82, WHICH OPENS UP WHEN IT COVALENTLY BINDS TO CYS 147 OF THE ENZYME 2ZTX PDB ENTRY 2ZTX PDB experimental model Enzyme inhibitor TG-0204998 Peptide-like MOL 501 2 ZU3 ZU3 501 A HOH 201 3 HOH HOH 201 A HOH 202 3 HOH HOH 202 A HOH 203 3 HOH HOH 203 A HOH 204 3 HOH HOH 204 A HOH 205 3 HOH HOH 205 A HOH 206 3 HOH HOH 206 A HOH 207 3 HOH HOH 207 A HOH 208 3 HOH HOH 208 A HOH 209 3 HOH HOH 209 A HOH 210 3 HOH HOH 210 A HOH 211 3 HOH HOH 211 A HOH 212 3 HOH HOH 212 A HOH 213 3 HOH HOH 213 A HOH 214 3 HOH HOH 214 A HOH 215 3 HOH HOH 215 A HOH 216 3 HOH HOH 216 A HOH 217 3 HOH HOH 217 A HOH 218 3 HOH HOH 218 A HOH 219 3 HOH HOH 219 A HOH 220 3 HOH HOH 220 A HOH 221 3 HOH HOH 221 A HOH 222 3 HOH HOH 222 A HOH 223 3 HOH HOH 223 A HOH 224 3 HOH HOH 224 A HOH 225 3 HOH HOH 225 A HOH 226 3 HOH HOH 226 A HOH 227 3 HOH HOH 227 A HOH 228 3 HOH HOH 228 A HOH 229 3 HOH HOH 229 A HOH 230 3 HOH HOH 230 A HOH 231 3 HOH HOH 231 A HOH 232 3 HOH HOH 232 A HOH 233 3 HOH HOH 233 A HOH 234 3 HOH HOH 234 A HOH 235 3 HOH HOH 235 A HOH 236 3 HOH HOH 236 A HOH 237 3 HOH HOH 237 A HOH 238 3 HOH HOH 238 A HOH 239 3 HOH HOH 239 A HOH 240 3 HOH HOH 240 A HOH 241 3 HOH HOH 241 A HOH 242 3 HOH HOH 242 A HOH 243 3 HOH HOH 243 A HOH 244 3 HOH HOH 244 A HOH 245 3 HOH HOH 245 A HOH 246 3 HOH HOH 246 A HOH 247 3 HOH HOH 247 A HOH 248 3 HOH HOH 248 A HOH 249 3 HOH HOH 249 A HOH 250 3 HOH HOH 250 A HOH 251 3 HOH HOH 251 A HOH 252 3 HOH HOH 252 A HOH 253 3 HOH HOH 253 A HOH 254 3 HOH HOH 254 A HOH 255 3 HOH HOH 255 A HOH 256 3 HOH HOH 256 A HOH 257 3 HOH HOH 257 A HOH 258 3 HOH HOH 258 A HOH 259 3 HOH HOH 259 A HOH 260 3 HOH HOH 260 A HOH 261 3 HOH HOH 261 A HOH 262 3 HOH HOH 262 A HOH 263 3 HOH HOH 263 A HOH 264 3 HOH HOH 264 A HOH 265 3 HOH HOH 265 A HOH 266 3 HOH HOH 266 A HOH 267 3 HOH HOH 267 A HOH 268 3 HOH HOH 268 A HOH 269 3 HOH HOH 269 A HOH 270 3 HOH HOH 270 A HOH 271 3 HOH HOH 271 A HOH 272 3 HOH HOH 272 A HOH 273 3 HOH HOH 273 A HOH 274 3 HOH HOH 274 A HOH 275 3 HOH HOH 275 A HOH 276 3 HOH HOH 276 A HOH 277 3 HOH HOH 277 A HOH 278 3 HOH HOH 278 A HOH 279 3 HOH HOH 279 A HOH 280 3 HOH HOH 280 A HOH 281 3 HOH HOH 281 A HOH 282 3 HOH HOH 282 A HOH 283 3 HOH HOH 283 A HOH 284 3 HOH HOH 284 A HOH 285 3 HOH HOH 285 A HOH 286 3 HOH HOH 286 A HOH 287 3 HOH HOH 287 A HOH 288 3 HOH HOH 288 A HOH 289 3 HOH HOH 289 A HOH 290 3 HOH HOH 290 A HOH 291 3 HOH HOH 291 A HOH 292 3 HOH HOH 292 A HOH 293 3 HOH HOH 293 A HOH 294 3 HOH HOH 294 A HOH 295 3 HOH HOH 295 A HOH 296 3 HOH HOH 296 A HOH 297 3 HOH HOH 297 A HOH 298 3 HOH HOH 298 A HOH 299 3 HOH HOH 299 A HOH 300 3 HOH HOH 300 A HOH 301 3 HOH HOH 301 A HOH 302 3 HOH HOH 302 A HOH 303 3 HOH HOH 303 A HOH 304 3 HOH HOH 304 A HOH 305 3 HOH HOH 305 A HOH 306 3 HOH HOH 306 A HOH 307 3 HOH HOH 307 A HOH 308 3 HOH HOH 308 A HOH 309 3 HOH HOH 309 A HOH 310 3 HOH HOH 310 A HOH 311 3 HOH HOH 311 A HOH 312 3 HOH HOH 312 A HOH 313 3 HOH HOH 313 A HOH 314 3 HOH HOH 314 A HOH 315 3 HOH HOH 315 A HOH 316 3 HOH HOH 316 A HOH 317 3 HOH HOH 317 A HOH 318 3 HOH HOH 318 A HOH 319 3 HOH HOH 319 A HOH 320 3 HOH HOH 320 A HOH 321 3 HOH HOH 321 A HOH 322 3 HOH HOH 322 A HOH 323 3 HOH HOH 323 A HOH 324 3 HOH HOH 324 A HOH 325 3 HOH HOH 325 A HOH 326 3 HOH HOH 326 A HOH 327 3 HOH HOH 327 A HOH 328 3 HOH HOH 328 A HOH 329 3 HOH HOH 329 A HOH 330 3 HOH HOH 330 A HOH 331 3 HOH HOH 331 A HOH 332 3 HOH HOH 332 A HOH 333 3 HOH HOH 333 A HOH 335 3 HOH HOH 335 A HOH 336 3 HOH HOH 336 A HOH 337 3 HOH HOH 337 A HOH 338 3 HOH HOH 338 A HOH 339 3 HOH HOH 339 A HOH 340 3 HOH HOH 340 A HOH 341 3 HOH HOH 341 A HOH 342 3 HOH HOH 342 A HOH 343 3 HOH HOH 343 A HOH 344 3 HOH HOH 344 A HOH 345 3 HOH HOH 345 A HOH 346 3 HOH HOH 346 A HOH 347 3 HOH HOH 347 A HOH 348 3 HOH HOH 348 A HOH 349 3 HOH HOH 349 A HOH 350 3 HOH HOH 350 A HOH 351 3 HOH HOH 351 A HOH 352 3 HOH HOH 352 A HOH 353 3 HOH HOH 353 A HOH 354 3 HOH HOH 354 A HOH 355 3 HOH HOH 355 A HOH 356 3 HOH HOH 356 A HOH 357 3 HOH HOH 357 A HOH 358 3 HOH HOH 358 A HOH 359 3 HOH HOH 359 A HOH 360 3 HOH HOH 360 A HOH 361 3 HOH HOH 361 A HOH 362 3 HOH HOH 362 A HOH 363 3 HOH HOH 363 A HOH 364 3 HOH HOH 364 A HOH 365 3 HOH HOH 365 A HOH 367 3 HOH HOH 367 A HOH 368 3 HOH HOH 368 A HOH 369 3 HOH HOH 369 A HOH 370 3 HOH HOH 370 A HOH 371 3 HOH HOH 371 A HOH 372 3 HOH HOH 372 A HOH 373 3 HOH HOH 373 A HOH 374 3 HOH HOH 374 A HOH 375 3 HOH HOH 375 A HOH 377 3 HOH HOH 377 A HOH 378 3 HOH HOH 378 A HOH 379 3 HOH HOH 379 A HOH 380 3 HOH HOH 380 A HOH 381 3 HOH HOH 381 A HOH 382 3 HOH HOH 382 A HOH 383 3 HOH HOH 383 A HOH 384 3 HOH HOH 384 A HOH 385 3 HOH HOH 385 A HOH 386 3 HOH HOH 386 A HOH 387 3 HOH HOH 387 A HOH 388 3 HOH HOH 388 A HOH 389 3 HOH HOH 389 A HOH 390 3 HOH HOH 390 A HOH 391 3 HOH HOH 391 A HOH 392 3 HOH HOH 392 A HOH 393 3 HOH HOH 393 A HOH 394 3 HOH HOH 394 A HOH 395 3 HOH HOH 395 A HOH 396 3 HOH HOH 396 A HOH 397 3 HOH HOH 397 A HOH 398 3 HOH HOH 398 A HOH 399 3 HOH HOH 399 A HOH 400 3 HOH HOH 400 A HOH 401 3 HOH HOH 401 A HOH 402 3 HOH HOH 402 A GLY 1 n 1 GLY 1 A PRO 2 n 2 PRO 2 A ALA 3 n 3 ALA 3 A PHE 4 n 4 PHE 4 A GLU 5 n 5 GLU 5 A PHE 6 n 6 PHE 6 A ALA 7 n 7 ALA 7 A VAL 8 n 8 VAL 8 A ALA 9 n 9 ALA 9 A MET 10 n 10 MET 10 A MET 11 n 11 MET 11 A LYS 12 n 12 LYS 12 A ARG 13 n 13 ARG 13 A ASN 14 n 14 ASN 14 A SER 15 n 15 SER 15 A SER 16 n 16 SER 16 A THR 17 n 17 THR 17 A VAL 18 n 18 VAL 18 A LYS 19 n 19 LYS 19 A THR 20 n 20 THR 20 A GLU 21 n 21 GLU 21 A TYR 22 n 22 TYR 22 A GLY 23 n 23 GLY 23 A GLU 24 n 24 GLU 24 A PHE 25 n 25 PHE 25 A THR 26 n 26 THR 26 A MET 27 n 27 MET 27 A LEU 28 n 28 LEU 28 A GLY 29 n 29 GLY 29 A ILE 30 n 30 ILE 30 A TYR 31 n 31 TYR 31 A ASP 32 n 32 ASP 32 A ARG 33 n 33 ARG 33 A TRP 34 n 34 TRP 34 A ALA 35 n 35 ALA 35 A VAL 36 n 36 VAL 36 A LEU 37 n 37 LEU 37 A PRO 38 n 38 PRO 38 A ARG 39 n 39 ARG 39 A HIS 40 n 40 HIS 40 A ALA 41 n 41 ALA 41 A LYS 42 n 42 LYS 42 A PRO 43 n 43 PRO 43 A GLY 44 n 44 GLY 44 A PRO 45 n 45 PRO 45 A THR 46 n 46 THR 46 A ILE 47 n 47 ILE 47 A LEU 48 n 48 LEU 48 A MET 49 n 49 MET 49 A ASN 50 n 50 ASN 50 A ASP 51 n 51 ASP 51 A GLN 52 n 52 GLN 52 A GLU 53 n 53 GLU 53 A VAL 54 n 54 VAL 54 A GLY 55 n 55 GLY 55 A VAL 56 n 56 VAL 56 A LEU 57 n 57 LEU 57 A ASP 58 n 58 ASP 58 A ALA 59 n 59 ALA 59 A LYS 60 n 60 LYS 60 A GLU 61 n 61 GLU 61 A LEU 62 n 62 LEU 62 A VAL 63 n 63 VAL 63 A ASP 64 n 64 ASP 64 A LYS 65 n 65 LYS 65 A ASP 66 n 66 ASP 66 A GLY 67 n 67 GLY 67 A THR 68 n 68 THR 68 A ASN 69 n 69 ASN 69 A LEU 70 n 70 LEU 70 A GLU 71 n 71 GLU 71 A LEU 72 n 72 LEU 72 A THR 73 n 73 THR 73 A LEU 74 n 74 LEU 74 A LEU 75 n 75 LEU 75 A LYS 76 n 76 LYS 76 A LEU 77 n 77 LEU 77 A ASN 78 n 78 ASN 78 A ARG 79 n 79 ARG 79 A ASN 80 n 80 ASN 80 A GLU 81 n 81 GLU 81 A LYS 82 n 82 LYS 82 A PHE 83 n 83 PHE 83 A ARG 84 n 84 ARG 84 A ASP 85 n 85 ASP 85 A ILE 86 n 86 ILE 86 A ARG 87 n 87 ARG 87 A GLY 88 n 88 GLY 88 A PHE 89 n 89 PHE 89 A LEU 90 n 90 LEU 90 A ALA 91 n 91 ALA 91 A LYS 92 n 92 LYS 92 A GLU 93 n 93 GLU 93 A GLU 94 n 94 GLU 94 A VAL 95 n 95 VAL 95 A GLU 96 n 96 GLU 96 A VAL 97 n 97 VAL 97 A ASN 98 n 98 ASN 98 A GLU 99 n 99 GLU 99 A ALA 100 n 100 ALA 100 A VAL 101 n 101 VAL 101 A LEU 102 n 102 LEU 102 A ALA 103 n 103 ALA 103 A ILE 104 n 104 ILE 104 A ASN 105 n 105 ASN 105 A THR 106 n 106 THR 106 A SER 107 n 107 SER 107 A LYS 108 n 108 LYS 108 A PHE 109 n 109 PHE 109 A PRO 110 n 110 PRO 110 A ASN 111 n 111 ASN 111 A MET 112 n 112 MET 112 A TYR 113 n 113 TYR 113 A ILE 114 n 114 ILE 114 A PRO 115 n 115 PRO 115 A VAL 116 n 116 VAL 116 A GLY 117 n 117 GLY 117 A GLN 118 n 118 GLN 118 A VAL 119 n 119 VAL 119 A THR 120 n 120 THR 120 A GLU 121 n 121 GLU 121 A TYR 122 n 122 TYR 122 A GLY 123 n 123 GLY 123 A PHE 124 n 124 PHE 124 A LEU 125 n 125 LEU 125 A ASN 126 n 126 ASN 126 A LEU 127 n 127 LEU 127 A GLY 128 n 128 GLY 128 A GLY 129 n 129 GLY 129 A THR 130 n 130 THR 130 A PRO 131 n 131 PRO 131 A THR 132 n 132 THR 132 A LYS 133 n 133 LYS 133 A ARG 134 n 134 ARG 134 A MET 135 n 135 MET 135 A LEU 136 n 136 LEU 136 A MET 137 n 137 MET 137 A TYR 138 n 138 TYR 138 A ASN 139 n 139 ASN 139 A PHE 140 n 140 PHE 140 A PRO 141 n 141 PRO 141 A THR 142 n 142 THR 142 A ARG 143 n 143 ARG 143 A ALA 144 n 144 ALA 144 A GLY 145 n 145 GLY 145 A GLN 146 n 146 GLN 146 A CYS 147 n 147 CYS 147 A GLY 148 n 148 GLY 148 A GLY 149 n 149 GLY 149 A VAL 150 n 150 VAL 150 A LEU 151 n 151 LEU 151 A MET 152 n 152 MET 152 A SER 153 n 153 SER 153 A THR 154 n 154 THR 154 A GLY 155 n 155 GLY 155 A LYS 156 n 156 LYS 156 A VAL 157 n 157 VAL 157 A LEU 158 n 158 LEU 158 A GLY 159 n 159 GLY 159 A ILE 160 n 160 ILE 160 A HIS 161 n 161 HIS 161 A VAL 162 n 162 VAL 162 A GLY 163 n 163 GLY 163 A GLY 164 n 164 GLY 164 A ASN 165 n 165 ASN 165 A GLY 166 n 166 GLY 166 A HIS 167 n 167 HIS 167 A GLN 168 n 168 GLN 168 A GLY 169 n 169 GLY 169 A PHE 170 n 170 PHE 170 A SER 171 n 171 SER 171 A ALA 172 n 172 ALA 172 A ALA 173 n 173 ALA 173 A LEU 174 n 174 LEU 174 A LEU 175 n 175 LEU 175 A LYS 176 n 176 LYS 176 A HIS 177 n 177 HIS 177 A TYR 178 n 178 TYR 178 A PHE 179 n 179 PHE 179 A ASN 180 n 180 ASN 180 A n 181 181 A n 182 182 A n 183 183 A author_defined_assembly 1 monomeric software_defined_assembly PISA 2 dimeric 1530 -13 15580 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 2_656 -x+1,y,-z+1 crystal symmetry operation 59.5251849020 0.0000000000 35.5444955419 A N VAL 18 A N VAL 18 A O PHE 25 A O PHE 25 A N TYR 31 A N TYR 31 A O TRP 34 A O TRP 34 A N LEU 37 A N LEU 37 A O THR 73 A O THR 73 A O ASN 78 A O ASN 78 A N GLY 55 A N GLY 55 A O GLN 52 A O GLN 52 A N MET 49 A N MET 49 A O LEU 48 A O LEU 48 A N LYS 19 A N LYS 19 A N ILE 104 A N ILE 104 A O MET 112 A O MET 112 A N LEU 127 A N LEU 127 A O THR 130 A O THR 130 A N TYR 138 A N TYR 138 A O GLY 169 A O GLY 169 A O ALA 172 A O ALA 172 A N ILE 160 A N ILE 160 A O GLY 159 A O GLY 159 A N LEU 151 A N LEU 151 A O MET 152 A O MET 152 A N VAL 101 A N VAL 101 1 A HOH 341 C HOH 1 A ASP 181 A ASP 181 1 Y 1 A GLU 182 A GLU 182 1 Y 1 A GLN 183 A GLN 183 1 Y 1 A A N O GLY HOH 1 234 1.83 1 A A O O HOH HOH 252 345 1.96 1 A A O O HOH HOH 253 336 1.96 1 A A O O GLY HOH 166 393 1.99 1 A A O O HOH HOH 230 347 2.02 1 A A O O HOH HOH 401 402 2.02 1 A A O O HOH HOH 288 307 2.04 1 A A O O HOH HOH 293 361 2.06 1 A A O O HOH HOH 344 345 2.08 1 A A O O HOH HOH 232 358 2.09 1 A A O O HOH HOH 284 326 2.11 1 A A O O HOH HOH 332 349 2.14 1 A A ND1 O HIS HOH 177 221 2.18 1 A A O O ASN HOH 165 392 2.19 1 A TYR 122 0.066 SIDE CHAIN 1 -14.58 1.90 111.40 96.82 A A A CB CA C VAL VAL VAL 36 36 36 N 1 18.37 2.30 115.30 133.67 A A A CA CB CG LEU LEU LEU 158 158 158 N 1 A A O O HOH HOH 319 319 1.74 1_555 2_656 1 A A O O HOH HOH 331 331 1.75 1_555 2_556 1 A ASP 32 42.58 -123.10 1 A LYS 42 39.89 55.85 1 A ASN 111 38.13 61.78 1 A PHE 140 -174.30 146.67 1 A ASN 165 177.46 141.18 82.47 34.23 17.47 0.055 0.000 -6.482 8.522 0.000 -8.577 0.219 0.192 0.192 1.75 25.03 793 17582 16266 4.500 92.5 1.00 1.00 RANDOM 1 Overall THROUGHOUT 0 0 MOLECULAR REPLACEMENT PDB ENTRY 2ZTX Engh & Huber 86.849 1.75 25.03 199 1641 44 0 1398 0.018 2.193 1.75 50.0 2ZU3 17634 17369 1 0.041 1 25.6 4.7 98.5 0.479 1.75 1.81 2.0 1718 1 4.3 data collection HKL-2000 refinement CNS data reduction HKL-2000 data scaling HKL-2000 phasing CNS Complex structure of CVB3 3C protease with TG-0204998 1 N N 2 N N 3 N N A GLY 1 A GLY 1 HELX_P A ASN 14 A ASN 14 1 1 14 A HIS 40 A HIS 40 HELX_P A LYS 42 A LYS 42 5 2 3 A ILE 86 A ILE 86 HELX_P A LEU 90 A LEU 90 5 3 5 A LEU 175 A LEU 175 HELX_P A ASN 180 A ASN 180 5 4 6 covale 1.863 none A CYS 147 A SG CYS 147 1_555 A ZU3 501 B C63 ZU3 1_555 hydrolase/hydrolase inhibitor protease-inhibitor complex, Hydrolase, Thiol protease, hydrolase-hydrolase inhibitor complex Q90092_9ENTO UNP 1 14 Q90092 GPAFEFAVAMMKRNSSTVKTEYGEFTMLGIYDRWAVLPRHAKPGPTILMNDQEVGVLDAKELVDKDGTNLELTLLKLNRN EKFRDIRGFLAKEEVEVNEAVLAINTSKFPNMYIPVGQVTEYGFLNLGGTPTKRMLMYNFPTRAGQCGGVLMSTGKVLGI HVGGNGHQGFSAALLKHYFNDEQ 14 196 2ZU3 1 183 Q90092 A 1 1 183 7 7 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A SER 15 A SER 15 A THR 20 A THR 20 A GLY 23 A GLY 23 A TYR 31 A TYR 31 A TRP 34 A TRP 34 A PRO 38 A PRO 38 A ASN 69 A ASN 69 A ASN 78 A ASN 78 A GLN 52 A GLN 52 A VAL 63 A VAL 63 A THR 46 A THR 46 A MET 49 A MET 49 A SER 15 A SER 15 A THR 20 A THR 20 A VAL 97 A VAL 97 A ILE 104 A ILE 104 A MET 112 A MET 112 A LEU 127 A LEU 127 A THR 130 A THR 130 A ASN 139 A ASN 139 A GLN 168 A GLN 168 A ALA 173 A ALA 173 A LYS 156 A LYS 156 A ASN 165 A ASN 165 A VAL 150 A VAL 150 A SER 153 A SER 153 A VAL 97 A VAL 97 A ILE 104 A ILE 104 BINDING SITE FOR RESIDUE ZU3 A 501 A ZU3 501 Software 18 A HIS 40 A HIS 40 18 1_555 A GLU 71 A GLU 71 18 1_555 A ASN 126 A ASN 126 18 1_555 A LEU 127 A LEU 127 18 1_555 A GLY 128 A GLY 128 18 1_555 A THR 142 A THR 142 18 1_555 A ARG 143 A ARG 143 18 1_555 A ALA 144 A ALA 144 18 1_555 A GLY 145 A GLY 145 18 1_555 A CYS 147 A CYS 147 18 1_555 A HIS 161 A HIS 161 18 1_555 A VAL 162 A VAL 162 18 1_555 A GLY 163 A GLY 163 18 1_555 A GLY 164 A GLY 164 18 1_555 A ASN 165 A ASN 165 18 1_555 A HOH 317 C HOH 18 1_555 A HOH 389 C HOH 18 1_555 A HOH 402 C HOH 18 1_555 5 C 1 2 1