0.007784
0.004494
0.000000
0.000000
0.008988
0.000000
0.000000
0.000000
0.018461
0.00000
0.00000
0.00000
Williams, N.K.
Rossjohn, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
9
90.00
90.00
120.00
128.468
128.468
54.169
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C15 H17 Cl N5 1
302.782
1-TERT-BUTYL-3-(4-CHLORO-PHENYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-YLAMINE
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
Y
273
N
C
Y
274
N
N
Y
275
N
C
Y
276
N
N
Y
277
N
C
Y
278
N
C
Y
279
N
C
Y
280
N
N
Y
281
N
N
Y
282
N
C
Y
283
N
C
Y
284
N
C
Y
285
N
C
Y
286
N
C
Y
287
N
C
N
288
N
C
N
289
N
C
N
290
N
C
N
291
N
C
N
292
N
N
N
293
N
CL
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
N
N
312
S
C
N
313
N
C
N
314
N
O
N
315
N
C
N
316
N
C
N
317
N
C
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
N
C
N
333
N
O
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
N
N
343
S
C
N
344
N
C
N
345
N
O
N
346
R
C
N
347
N
O
N
348
N
C
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
N
N
360
S
C
N
361
N
C
N
362
N
O
N
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
N
Y
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
N
373
N
O
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
N
N
387
S
C
N
388
N
C
N
389
N
O
N
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
C
Y
394
N
C
Y
395
N
C
Y
396
N
C
N
397
N
O
N
398
N
O
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
N
N
411
S
C
N
412
N
C
N
413
N
O
N
414
N
C
N
415
N
C
N
416
N
C
N
417
N
O
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
Y
260
N
sing
Y
261
N
doub
Y
262
N
sing
Y
263
N
doub
Y
264
N
sing
N
265
N
sing
Y
266
N
doub
Y
267
N
sing
N
268
N
sing
Y
269
N
sing
Y
270
N
doub
Y
271
N
sing
Y
272
N
sing
N
273
N
sing
N
274
N
sing
Y
275
N
sing
Y
276
N
doub
Y
277
N
doub
N
278
N
sing
Y
279
N
sing
N
280
N
sing
Y
281
N
doub
N
282
N
sing
Y
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
Y
357
N
doub
Y
358
N
sing
Y
359
N
sing
N
360
N
sing
Y
361
N
doub
Y
362
N
sing
Y
363
N
sing
N
364
N
sing
Y
365
N
sing
Y
366
N
doub
N
367
N
sing
Y
368
N
doub
N
369
N
sing
Y
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
doub
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
Y
385
N
doub
Y
386
N
sing
Y
387
N
sing
N
388
N
sing
Y
389
N
doub
N
390
N
sing
Y
391
N
doub
N
392
N
sing
Y
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
doub
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
284
284
291
10.1074/jbc.M807850200
18984583
Crystal Structures of the Lyn Protein Tyrosine Kinase Domain in Its Apo- and Inhibitor-bound State
2009
10.2210/pdb2zv9/pdb
pdb_00002zv9
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
SINGLE WAVELENGTH
M
x-ray
1
1.54180
1.0
1.54180
ROTATING ANODE
RIGAKU RUH3R
31810.639
Tyrosine-protein kinase Lyn
2.7.10.2
Kinase Domain, residues 239-512
1
man
polymer
302.782
1-TERT-BUTYL-3-(4-CHLORO-PHENYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-YLAMINE
1
syn
non-polymer
18.015
water
16
nat
water
no
no
GAMDPAWEIPRESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEE
PIYIITEFMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIE
DNEYTAREGAKFPIKWTAPEAINFGCFTIKSNVWSFGILLYEIVTYGKIPYPGRTNADVMSALSQGYRMPRMENCPDELY
DIMKMCWKEKAEERPTFDYLQSVLDDFYTATEGQYQQQP
GAMDPAWEIPRESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEE
PIYIITEFMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIE
DNEYTAREGAKFPIKWTAPEAINFGCFTIKSNVWSFGILLYEIVTYGKIPYPGRTNADVMSALSQGYRMPRMENCPDELY
DIMKMCWKEKAEERPTFDYLQSVLDDFYTATEGQYQQQP
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
mouse
fall armyworm
sample
10090
Mus musculus
7108
Spodoptera frugiperda
SF9
baculovirus
1
2.70
54.52
VAPOR DIFFUSION, SITTING DROP
7.5
23% polyethylene glycol 3350, 0.1M NaCl, 0.1M Na-Hepes pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2008-11-11
1
1
2011-07-13
1
2
2023-11-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Lyn Protein Tyrosine Kinase Domain, Apo-form
Lyn Protein Tyrosine Kinase Domain-AMP-PNP complex
Lyn Protein Tyrosine Kinase Domain-Dasatinib complex
PDBJ
Y
PDBJ
2008-11-04
REL
REL
PP2
1-TERT-BUTYL-3-(4-CHLORO-PHENYL)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-YLAMINE
HOH
water
THE SEQUENCE IS BASED ON REFERENCE 1 IN THE DATABASE,
LYN_MOUSE.
1QPD
PDB ENTRY 1QPD
PDB
experimental model
PP2
504
2
PP2
PP2
513
A
HOH
1
3
HOH
HOH
1
A
HOH
2
3
HOH
HOH
2
A
HOH
3
3
HOH
HOH
3
A
HOH
4
3
HOH
HOH
4
A
HOH
5
3
HOH
HOH
5
A
HOH
6
3
HOH
HOH
6
A
HOH
7
3
HOH
HOH
7
A
HOH
8
3
HOH
HOH
8
A
HOH
9
3
HOH
HOH
9
A
HOH
11
3
HOH
HOH
11
A
HOH
12
3
HOH
HOH
12
A
HOH
14
3
HOH
HOH
14
A
HOH
16
3
HOH
HOH
16
A
HOH
17
3
HOH
HOH
17
A
HOH
18
3
HOH
HOH
18
A
HOH
19
3
HOH
HOH
19
A
n
1
234
A
n
2
235
A
n
3
236
A
n
4
237
A
PRO
238
n
5
PRO
238
A
ALA
239
n
6
ALA
239
A
TRP
240
n
7
TRP
240
A
GLU
241
n
8
GLU
241
A
ILE
242
n
9
ILE
242
A
PRO
243
n
10
PRO
243
A
ARG
244
n
11
ARG
244
A
GLU
245
n
12
GLU
245
A
SER
246
n
13
SER
246
A
ILE
247
n
14
ILE
247
A
LYS
248
n
15
LYS
248
A
LEU
249
n
16
LEU
249
A
VAL
250
n
17
VAL
250
A
LYS
251
n
18
LYS
251
A
LYS
252
n
19
LYS
252
A
LEU
253
n
20
LEU
253
A
GLY
254
n
21
GLY
254
A
ALA
255
n
22
ALA
255
A
GLY
256
n
23
GLY
256
A
GLN
257
n
24
GLN
257
A
PHE
258
n
25
PHE
258
A
GLY
259
n
26
GLY
259
A
GLU
260
n
27
GLU
260
A
VAL
261
n
28
VAL
261
A
TRP
262
n
29
TRP
262
A
MET
263
n
30
MET
263
A
GLY
264
n
31
GLY
264
A
TYR
265
n
32
TYR
265
A
TYR
266
n
33
TYR
266
A
ASN
267
n
34
ASN
267
A
ASN
268
n
35
ASN
268
A
SER
269
n
36
SER
269
A
THR
270
n
37
THR
270
A
LYS
271
n
38
LYS
271
A
VAL
272
n
39
VAL
272
A
ALA
273
n
40
ALA
273
A
VAL
274
n
41
VAL
274
A
LYS
275
n
42
LYS
275
A
THR
276
n
43
THR
276
A
LEU
277
n
44
LEU
277
A
LYS
278
n
45
LYS
278
A
PRO
279
n
46
PRO
279
A
GLY
280
n
47
GLY
280
A
THR
281
n
48
THR
281
A
MET
282
n
49
MET
282
A
SER
283
n
50
SER
283
A
VAL
284
n
51
VAL
284
A
GLN
285
n
52
GLN
285
A
ALA
286
n
53
ALA
286
A
PHE
287
n
54
PHE
287
A
LEU
288
n
55
LEU
288
A
GLU
289
n
56
GLU
289
A
GLU
290
n
57
GLU
290
A
ALA
291
n
58
ALA
291
A
ASN
292
n
59
ASN
292
A
LEU
293
n
60
LEU
293
A
MET
294
n
61
MET
294
A
LYS
295
n
62
LYS
295
A
THR
296
n
63
THR
296
A
LEU
297
n
64
LEU
297
A
GLN
298
n
65
GLN
298
A
HIS
299
n
66
HIS
299
A
ASP
300
n
67
ASP
300
A
LYS
301
n
68
LYS
301
A
LEU
302
n
69
LEU
302
A
VAL
303
n
70
VAL
303
A
ARG
304
n
71
ARG
304
A
LEU
305
n
72
LEU
305
A
TYR
306
n
73
TYR
306
A
ALA
307
n
74
ALA
307
A
VAL
308
n
75
VAL
308
A
VAL
309
n
76
VAL
309
A
THR
310
n
77
THR
310
A
LYS
311
n
78
LYS
311
A
GLU
312
n
79
GLU
312
A
GLU
313
n
80
GLU
313
A
PRO
314
n
81
PRO
314
A
ILE
315
n
82
ILE
315
A
TYR
316
n
83
TYR
316
A
ILE
317
n
84
ILE
317
A
ILE
318
n
85
ILE
318
A
THR
319
n
86
THR
319
A
GLU
320
n
87
GLU
320
A
PHE
321
n
88
PHE
321
A
MET
322
n
89
MET
322
A
ALA
323
n
90
ALA
323
A
LYS
324
n
91
LYS
324
A
GLY
325
n
92
GLY
325
A
SER
326
n
93
SER
326
A
LEU
327
n
94
LEU
327
A
LEU
328
n
95
LEU
328
A
ASP
329
n
96
ASP
329
A
PHE
330
n
97
PHE
330
A
LEU
331
n
98
LEU
331
A
LYS
332
n
99
LYS
332
A
SER
333
n
100
SER
333
A
ASP
334
n
101
ASP
334
A
GLU
335
n
102
GLU
335
A
GLY
336
n
103
GLY
336
A
GLY
337
n
104
GLY
337
A
LYS
338
n
105
LYS
338
A
VAL
339
n
106
VAL
339
A
LEU
340
n
107
LEU
340
A
LEU
341
n
108
LEU
341
A
PRO
342
n
109
PRO
342
A
LYS
343
n
110
LYS
343
A
LEU
344
n
111
LEU
344
A
ILE
345
n
112
ILE
345
A
ASP
346
n
113
ASP
346
A
PHE
347
n
114
PHE
347
A
SER
348
n
115
SER
348
A
ALA
349
n
116
ALA
349
A
GLN
350
n
117
GLN
350
A
ILE
351
n
118
ILE
351
A
ALA
352
n
119
ALA
352
A
GLU
353
n
120
GLU
353
A
GLY
354
n
121
GLY
354
A
MET
355
n
122
MET
355
A
ALA
356
n
123
ALA
356
A
TYR
357
n
124
TYR
357
A
ILE
358
n
125
ILE
358
A
GLU
359
n
126
GLU
359
A
ARG
360
n
127
ARG
360
A
LYS
361
n
128
LYS
361
A
ASN
362
n
129
ASN
362
A
TYR
363
n
130
TYR
363
A
ILE
364
n
131
ILE
364
A
HIS
365
n
132
HIS
365
A
ARG
366
n
133
ARG
366
A
ASP
367
n
134
ASP
367
A
LEU
368
n
135
LEU
368
A
ARG
369
n
136
ARG
369
A
ALA
370
n
137
ALA
370
A
ALA
371
n
138
ALA
371
A
ASN
372
n
139
ASN
372
A
VAL
373
n
140
VAL
373
A
LEU
374
n
141
LEU
374
A
VAL
375
n
142
VAL
375
A
SER
376
n
143
SER
376
A
GLU
377
n
144
GLU
377
A
SER
378
n
145
SER
378
A
LEU
379
n
146
LEU
379
A
MET
380
n
147
MET
380
A
CYS
381
n
148
CYS
381
A
LYS
382
n
149
LYS
382
A
ILE
383
n
150
ILE
383
A
ALA
384
n
151
ALA
384
A
ASP
385
n
152
ASP
385
A
PHE
386
n
153
PHE
386
A
GLY
387
n
154
GLY
387
A
LEU
388
n
155
LEU
388
A
ALA
389
n
156
ALA
389
A
ARG
390
n
157
ARG
390
A
VAL
391
n
158
VAL
391
A
ILE
392
n
159
ILE
392
A
n
160
393
A
n
161
394
A
n
162
395
A
n
163
396
A
n
164
397
A
n
165
398
A
n
166
399
A
n
167
400
A
GLU
401
n
168
GLU
401
A
GLY
402
n
169
GLY
402
A
ALA
403
n
170
ALA
403
A
LYS
404
n
171
LYS
404
A
PHE
405
n
172
PHE
405
A
PRO
406
n
173
PRO
406
A
ILE
407
n
174
ILE
407
A
LYS
408
n
175
LYS
408
A
TRP
409
n
176
TRP
409
A
THR
410
n
177
THR
410
A
ALA
411
n
178
ALA
411
A
PRO
412
n
179
PRO
412
A
GLU
413
n
180
GLU
413
A
ALA
414
n
181
ALA
414
A
ILE
415
n
182
ILE
415
A
ASN
416
n
183
ASN
416
A
PHE
417
n
184
PHE
417
A
GLY
418
n
185
GLY
418
A
CYS
419
n
186
CYS
419
A
PHE
420
n
187
PHE
420
A
THR
421
n
188
THR
421
A
ILE
422
n
189
ILE
422
A
LYS
423
n
190
LYS
423
A
SER
424
n
191
SER
424
A
ASN
425
n
192
ASN
425
A
VAL
426
n
193
VAL
426
A
TRP
427
n
194
TRP
427
A
SER
428
n
195
SER
428
A
PHE
429
n
196
PHE
429
A
GLY
430
n
197
GLY
430
A
ILE
431
n
198
ILE
431
A
LEU
432
n
199
LEU
432
A
LEU
433
n
200
LEU
433
A
TYR
434
n
201
TYR
434
A
GLU
435
n
202
GLU
435
A
ILE
436
n
203
ILE
436
A
VAL
437
n
204
VAL
437
A
THR
438
n
205
THR
438
A
TYR
439
n
206
TYR
439
A
GLY
440
n
207
GLY
440
A
LYS
441
n
208
LYS
441
A
ILE
442
n
209
ILE
442
A
PRO
443
n
210
PRO
443
A
TYR
444
n
211
TYR
444
A
PRO
445
n
212
PRO
445
A
GLY
446
n
213
GLY
446
A
ARG
447
n
214
ARG
447
A
THR
448
n
215
THR
448
A
ASN
449
n
216
ASN
449
A
ALA
450
n
217
ALA
450
A
ASP
451
n
218
ASP
451
A
VAL
452
n
219
VAL
452
A
MET
453
n
220
MET
453
A
SER
454
n
221
SER
454
A
ALA
455
n
222
ALA
455
A
LEU
456
n
223
LEU
456
A
SER
457
n
224
SER
457
A
GLN
458
n
225
GLN
458
A
GLY
459
n
226
GLY
459
A
TYR
460
n
227
TYR
460
A
ARG
461
n
228
ARG
461
A
MET
462
n
229
MET
462
A
PRO
463
n
230
PRO
463
A
ARG
464
n
231
ARG
464
A
MET
465
n
232
MET
465
A
GLU
466
n
233
GLU
466
A
ASN
467
n
234
ASN
467
A
CYS
468
n
235
CYS
468
A
PRO
469
n
236
PRO
469
A
ASP
470
n
237
ASP
470
A
GLU
471
n
238
GLU
471
A
LEU
472
n
239
LEU
472
A
TYR
473
n
240
TYR
473
A
ASP
474
n
241
ASP
474
A
ILE
475
n
242
ILE
475
A
MET
476
n
243
MET
476
A
LYS
477
n
244
LYS
477
A
MET
478
n
245
MET
478
A
CYS
479
n
246
CYS
479
A
TRP
480
n
247
TRP
480
A
LYS
481
n
248
LYS
481
A
GLU
482
n
249
GLU
482
A
LYS
483
n
250
LYS
483
A
ALA
484
n
251
ALA
484
A
GLU
485
n
252
GLU
485
A
GLU
486
n
253
GLU
486
A
ARG
487
n
254
ARG
487
A
PRO
488
n
255
PRO
488
A
THR
489
n
256
THR
489
A
PHE
490
n
257
PHE
490
A
ASP
491
n
258
ASP
491
A
TYR
492
n
259
TYR
492
A
LEU
493
n
260
LEU
493
A
GLN
494
n
261
GLN
494
A
SER
495
n
262
SER
495
A
VAL
496
n
263
VAL
496
A
LEU
497
n
264
LEU
497
A
ASP
498
n
265
ASP
498
A
ASP
499
n
266
ASP
499
A
PHE
500
n
267
PHE
500
A
TYR
501
n
268
TYR
501
A
n
269
502
A
n
270
503
A
n
271
504
A
n
272
505
A
n
273
506
A
n
274
507
A
n
275
508
A
n
276
509
A
n
277
510
A
n
278
511
A
n
279
512
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
253
A
N
LEU
20
A
O
VAL
261
A
O
VAL
28
A
N
GLU
260
A
N
GLU
27
A
O
THR
276
A
O
THR
43
A
N
LYS
275
A
N
LYS
42
A
O
ILE
317
A
O
ILE
84
A
O
ILE
318
A
O
ILE
85
A
N
TYR
306
A
N
TYR
73
A
N
LEU
374
A
N
LEU
141
A
O
LYS
382
A
O
LYS
149
1
A
CG
GLU
245
A
CG
GLU
12
1
Y
1
A
CD
GLU
245
A
CD
GLU
12
1
Y
1
A
OE1
GLU
245
A
OE1
GLU
12
1
Y
1
A
OE2
GLU
245
A
OE2
GLU
12
1
Y
1
A
CG
LYS
248
A
CG
LYS
15
1
Y
1
A
CD
LYS
248
A
CD
LYS
15
1
Y
1
A
CE
LYS
248
A
CE
LYS
15
1
Y
1
A
NZ
LYS
248
A
NZ
LYS
15
1
Y
1
A
CG
GLN
257
A
CG
GLN
24
1
Y
1
A
CD
GLN
257
A
CD
GLN
24
1
Y
1
A
OE1
GLN
257
A
OE1
GLN
24
1
Y
1
A
NE2
GLN
257
A
NE2
GLN
24
1
Y
1
A
CG
GLU
401
A
CG
GLU
168
1
Y
1
A
CD
GLU
401
A
CD
GLU
168
1
Y
1
A
OE1
GLU
401
A
OE1
GLU
168
1
Y
1
A
OE2
GLU
401
A
OE2
GLU
168
1
Y
1
A
CG
LYS
477
A
CG
LYS
244
1
Y
1
A
CD
LYS
477
A
CD
LYS
244
1
Y
1
A
CE
LYS
477
A
CE
LYS
244
1
Y
1
A
NZ
LYS
477
A
NZ
LYS
244
1
Y
1
A
GLY
234
A
GLY
1
1
Y
1
A
ALA
235
A
ALA
2
1
Y
1
A
MET
236
A
MET
3
1
Y
1
A
ASP
237
A
ASP
4
1
Y
1
A
GLU
393
A
GLU
160
1
Y
1
A
ASP
394
A
ASP
161
1
Y
1
A
ASN
395
A
ASN
162
1
Y
1
A
GLU
396
A
GLU
163
1
Y
1
A
TYR
397
A
TYR
164
1
Y
1
A
THR
398
A
THR
165
1
Y
1
A
ALA
399
A
ALA
166
1
Y
1
A
ARG
400
A
ARG
167
1
Y
1
A
THR
502
A
THR
269
1
Y
1
A
ALA
503
A
ALA
270
1
Y
1
A
THR
504
A
THR
271
1
Y
1
A
GLU
505
A
GLU
272
1
Y
1
A
GLY
506
A
GLY
273
1
Y
1
A
GLN
507
A
GLN
274
1
Y
1
A
TYR
508
A
TYR
275
1
Y
1
A
GLN
509
A
GLN
276
1
Y
1
A
GLN
510
A
GLN
277
1
Y
1
A
GLN
511
A
GLN
278
1
Y
1
A
PRO
512
A
PRO
279
1
Y
1
A
A
MET
SER
282
283
76.88
1
A
A
GLU
GLY
401
402
143.27
1
A
A
GLY
ALA
402
403
-109.81
1
A
A
VAL
MET
452
453
-125.17
1
A
A
MET
SER
453
454
118.33
1
A
ALA
239
-92.50
51.42
1
A
GLU
245
-23.34
-50.42
1
A
VAL
250
-93.81
-64.04
1
A
ASN
267
27.94
53.31
1
A
ASN
268
70.55
-26.30
1
A
VAL
284
-59.51
-0.20
1
A
LYS
311
-132.20
-32.33
1
A
LYS
361
-46.63
-14.48
1
A
ASN
362
73.11
32.49
1
A
ARG
366
77.20
-16.11
1
A
ALA
384
-124.48
-167.73
1
A
ASP
385
52.26
77.17
1
A
ALA
403
-102.06
-103.80
1
A
LYS
404
98.44
84.97
1
A
TYR
439
62.99
61.26
1
A
MET
453
-155.39
-36.10
1
A
SER
454
-33.83
-70.63
12.426
0.03
0.01
0.00
0.03
0.00
-0.04
0.947
0.931
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.23118
0.19499
0.19671
2.76
33.22
381
7954
4.6
97.12
30.660
0.282
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.336
0.80
0.80
1.20
PDB ENTRY 1QPD
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
2.76
33.22
16
2068
21
0
2031
0.008
0.022
2130
1.235
1.982
2884
6.265
5.000
259
35.913
24.023
87
16.881
15.000
372
19.876
15.000
10
0.075
0.200
315
0.003
0.020
1584
0.206
0.200
1027
0.312
0.200
1443
0.127
0.200
57
0.165
0.200
22
0.131
0.200
2
0.838
3.000
1333
1.550
5.000
2086
1.939
7.000
943
3.052
10.000
798
0.235
0.307
2.832
17
487
20
77.30
2.76
48.7
2ZV9
8337
1
refinement
REFMAC
5.2.0019
Lyn Tyrosine Kinase Domain-PP2 complex
1
N
N
2
N
N
3
N
N
A
PRO
243
A
PRO
10
HELX_P
A
GLU
245
A
GLU
12
5
1
3
A
GLN
285
A
GLN
52
HELX_P
A
LYS
295
A
LYS
62
1
2
11
A
SER
326
A
SER
93
HELX_P
A
SER
333
A
SER
100
1
3
8
A
GLU
335
A
GLU
102
HELX_P
A
VAL
339
A
VAL
106
5
4
5
A
LEU
340
A
LEU
107
HELX_P
A
LYS
361
A
LYS
128
1
5
22
A
ARG
369
A
ARG
136
HELX_P
A
ALA
371
A
ALA
138
5
6
3
A
PRO
406
A
PRO
173
HELX_P
A
THR
410
A
THR
177
5
7
5
A
ALA
411
A
ALA
178
HELX_P
A
GLY
418
A
GLY
185
1
8
8
A
THR
421
A
THR
188
HELX_P
A
THR
438
A
THR
205
1
9
18
A
ALA
450
A
ALA
217
HELX_P
A
GLN
458
A
GLN
225
1
10
9
A
PRO
469
A
PRO
236
HELX_P
A
TRP
480
A
TRP
247
1
11
12
A
LYS
483
A
LYS
250
HELX_P
A
ARG
487
A
ARG
254
5
12
5
A
THR
489
A
THR
256
HELX_P
A
ASP
499
A
ASP
266
1
13
11
TRANSFERASE
Lyn Kinase PP2, Alternative splicing, ATP-binding, Kinase, Lipoprotein, Myristate, Nucleotide-binding, Palmitate, Phosphoprotein, Proto-oncogene, SH2 domain, SH3 domain, Transferase, Tyrosine-protein kinase
LYN_MOUSE
UNP
1
239
P25911
AWEIPRESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYII
TEFMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYT
AREGAKFPIKWTAPEAINFGCFTIKSNVWSFGILLYEIVTYGKIPYPGRTNADVMSALSQGYRMPRMENCPDELYDIMKM
CWKEKAEERPTFDYLQSVLDDFYTATEGQYQQQP
239
512
2ZV9
239
512
P25911
A
1
6
279
1
expression tag
GLY
234
2ZV9
A
P25911
UNP
1
1
expression tag
ALA
235
2ZV9
A
P25911
UNP
2
1
expression tag
MET
236
2ZV9
A
P25911
UNP
3
1
expression tag
ASP
237
2ZV9
A
P25911
UNP
4
1
expression tag
PRO
238
2ZV9
A
P25911
UNP
5
5
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
247
A
ILE
14
A
ALA
255
A
ALA
22
A
GLU
260
A
GLU
27
A
TYR
266
A
TYR
33
A
THR
270
A
THR
37
A
THR
276
A
THR
43
A
TYR
316
A
TYR
83
A
GLU
320
A
GLU
87
A
LEU
305
A
LEU
72
A
VAL
309
A
VAL
76
A
VAL
373
A
VAL
140
A
VAL
375
A
VAL
142
A
CYS
381
A
CYS
148
A
ILE
383
A
ILE
150
BINDING SITE FOR RESIDUE PP2 A 513
A
PP2
513
Software
10
A
LEU
253
A
LEU
20
10
1_555
A
ALA
273
A
ALA
40
10
1_555
A
GLU
290
A
GLU
57
10
1_555
A
MET
294
A
MET
61
10
1_555
A
ILE
317
A
ILE
84
10
1_555
A
THR
319
A
THR
86
10
1_555
A
GLU
320
A
GLU
87
10
1_555
A
MET
322
A
MET
89
10
1_555
A
SER
326
A
SER
93
10
1_555
A
LEU
374
A
LEU
141
10
1_555
146
H 3