0.015606
0.000000
0.000000
0.000000
0.015606
0.000000
0.000000
0.000000
0.009059
0.000000
0.000000
0.000000
Sato, Y.
Antony, P.
Rochel, N.
Moras, D.
Structural Genomics Consortium for Research on Gene Expression (SGCGES)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
64.079
64.079
110.389
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C23 H26 O4
366.450
4-[2-(1,1,3,3-tetramethyl-2,3-dihydro-1H-inden-5-yl)-1,3-dioxolan-2-yl]benzoic acid
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
O
N
251
N
C
N
252
N
O
Y
253
N
C
Y
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
N
259
N
C
N
260
N
O
N
261
N
C
N
262
N
C
N
263
N
O
Y
264
N
C
Y
265
N
C
Y
266
N
C
N
267
N
C
N
268
N
C
N
269
N
C
Y
270
N
C
Y
271
N
C
Y
272
N
C
N
273
N
C
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
N
N
304
S
C
N
305
N
C
N
306
N
O
N
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
N
N
344
S
C
N
345
N
C
N
346
N
O
N
347
N
C
N
348
N
O
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
N
N
358
S
C
N
359
N
C
N
360
N
O
N
361
R
C
N
362
N
O
N
363
N
C
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
N
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
N
388
N
O
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
N
N
402
S
C
N
403
N
C
N
404
N
O
N
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
N
412
N
O
N
413
N
O
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
N
N
426
S
C
N
427
N
C
N
428
N
O
N
429
N
C
N
430
N
C
N
431
N
C
N
432
N
O
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
Y
240
N
doub
Y
241
N
sing
Y
242
N
sing
Y
243
N
doub
Y
244
N
doub
Y
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
Y
253
N
doub
Y
254
N
sing
Y
255
N
sing
N
256
N
sing
Y
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
Y
261
N
doub
Y
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
N
309
N
sing
Y
310
N
doub
N
311
N
sing
Y
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
Y
373
N
doub
Y
374
N
sing
Y
375
N
sing
N
376
N
sing
Y
377
N
doub
Y
378
N
sing
Y
379
N
sing
N
380
N
sing
Y
381
N
sing
Y
382
N
doub
N
383
N
sing
Y
384
N
doub
N
385
N
sing
Y
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
doub
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
Y
401
N
doub
Y
402
N
sing
Y
403
N
sing
N
404
N
sing
Y
405
N
doub
N
406
N
sing
Y
407
N
doub
N
408
N
sing
Y
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
doub
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
DE
Chemmedchem
1860-7179
4
1143
1152
10.1002/cmdc.200900090
19496083
Silicon analogues of the RXR-selective retinoid agonist SR11237 (BMS649): chemistry and biology
2009
10.2210/pdb2zxz/pdb
pdb_00002zxz
100
1
CCD
2007-10-09
ADSC QUANTUM 315
Si(311) or Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.00
1.0
ID29
ESRF
1.00
SYNCHROTRON
ESRF BEAMLINE ID29
26856.039
Retinoic acid receptor RXR-alpha
Ligand Binding Domain
1
man
polymer
1579.866
GRIP1 from Nuclear receptor coactivator 2
1
syn
polymer
366.450
4-[2-(1,1,3,3-tetramethyl-2,3-dihydro-1H-inden-5-yl)-1,3-dioxolan-2-yl]benzoic acid
1
syn
non-polymer
18.015
water
21
nat
water
Retinoid X receptor alpha, Nuclear receptor subfamily 2 group B member 1
NCoA-2, Transcriptional intermediary factor 2, hTIF2
no
no
TSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLR
AGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKG
LSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
TSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLR
AGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKG
LSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
A
polypeptide(L)
no
no
KHKILHRLLQDSS
KHKILHRLLQDSS
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
BL21(DE3)
PLASMID
pET15b
1
1.99
38.27
VAPOR DIFFUSION, HANGING DROP
8.0
10mM Tris-HCl, 250mM NaCl, 5mM DTT, 50mM calcium acetate, 18% PEG3350, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 290K
290
Structural Genomics Consortium for Research on Gene Expression
SGCGES
pdbx_unobs_or_zero_occ_atoms
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_unobs_or_zero_occ_atoms
struct_site
repository
Initial release
Version format compliance
Advisory
Refinement description
Advisory
Data collection
Database references
Derived calculations
Refinement description
1
0
2009-08-11
1
1
2011-07-13
1
2
2017-10-11
1
3
2023-11-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1FBY contains the human RXR alpha ligand binding domain bound to 9-cis retinoic acid
1MVC contains the same protein complexed with BMS 649
1MV9 contains the same protein complexed with DHA (Docosa Hexaenoic Acid)
Y
PDBJ
Y
PDBJ
2009-01-09
REL
REL
P26
4-[2-(1,1,3,3-tetramethyl-2,3-dihydro-1H-inden-5-yl)-1,3-dioxolan-2-yl]benzoic acid
HOH
water
This sequence occurs naturally in humans.
sample
1MZN
PDB ENTRY 1MZN
PDB
experimental model
P26
1
3
P26
P26
1
A
HOH
2
4
HOH
HOH
2
A
HOH
3
4
HOH
HOH
3
A
HOH
5
4
HOH
HOH
5
A
HOH
8
4
HOH
HOH
8
A
HOH
12
4
HOH
HOH
12
A
HOH
13
4
HOH
HOH
13
A
HOH
14
4
HOH
HOH
14
A
HOH
15
4
HOH
HOH
15
A
HOH
18
4
HOH
HOH
18
A
HOH
23
4
HOH
HOH
23
A
HOH
24
4
HOH
HOH
24
A
HOH
25
4
HOH
HOH
25
A
HOH
27
4
HOH
HOH
27
A
HOH
28
4
HOH
HOH
28
A
HOH
29
4
HOH
HOH
29
A
HOH
30
4
HOH
HOH
30
A
HOH
31
4
HOH
HOH
31
A
HOH
32
4
HOH
HOH
32
A
HOH
33
4
HOH
HOH
33
A
HOH
1
4
HOH
HOH
463
A
HOH
21
4
HOH
HOH
21
B
n
1
223
A
n
2
224
A
n
3
225
A
n
4
226
A
n
5
227
A
n
6
228
A
ASP
229
n
7
ASP
229
A
MET
230
n
8
MET
230
A
PRO
231
n
9
PRO
231
A
VAL
232
n
10
VAL
232
A
GLU
233
n
11
GLU
233
A
ARG
234
n
12
ARG
234
A
ILE
235
n
13
ILE
235
A
LEU
236
n
14
LEU
236
A
GLU
237
n
15
GLU
237
A
ALA
238
n
16
ALA
238
A
GLU
239
n
17
GLU
239
A
LEU
240
n
18
LEU
240
A
ALA
241
n
19
ALA
241
A
VAL
242
n
20
VAL
242
A
GLU
243
n
21
GLU
243
A
PRO
244
n
22
PRO
244
A
n
23
245
A
n
24
246
A
n
25
247
A
n
26
248
A
n
27
249
A
n
28
250
A
n
29
251
A
n
30
252
A
n
31
253
A
n
32
254
A
n
33
255
A
n
34
256
A
n
35
257
A
n
36
258
A
n
37
259
A
n
38
260
A
n
39
261
A
ASN
262
n
40
ASN
262
A
ASP
263
n
41
ASP
263
A
PRO
264
n
42
PRO
264
A
VAL
265
n
43
VAL
265
A
THR
266
n
44
THR
266
A
ASN
267
n
45
ASN
267
A
ILE
268
n
46
ILE
268
A
CYS
269
n
47
CYS
269
A
GLN
270
n
48
GLN
270
A
ALA
271
n
49
ALA
271
A
ALA
272
n
50
ALA
272
A
ASP
273
n
51
ASP
273
A
LYS
274
n
52
LYS
274
A
GLN
275
n
53
GLN
275
A
LEU
276
n
54
LEU
276
A
PHE
277
n
55
PHE
277
A
THR
278
n
56
THR
278
A
LEU
279
n
57
LEU
279
A
VAL
280
n
58
VAL
280
A
GLU
281
n
59
GLU
281
A
TRP
282
n
60
TRP
282
A
ALA
283
n
61
ALA
283
A
LYS
284
n
62
LYS
284
A
ARG
285
n
63
ARG
285
A
ILE
286
n
64
ILE
286
A
PRO
287
n
65
PRO
287
A
HIS
288
n
66
HIS
288
A
PHE
289
n
67
PHE
289
A
SER
290
n
68
SER
290
A
GLU
291
n
69
GLU
291
A
LEU
292
n
70
LEU
292
A
PRO
293
n
71
PRO
293
A
LEU
294
n
72
LEU
294
A
ASP
295
n
73
ASP
295
A
ASP
296
n
74
ASP
296
A
GLN
297
n
75
GLN
297
A
VAL
298
n
76
VAL
298
A
ILE
299
n
77
ILE
299
A
LEU
300
n
78
LEU
300
A
LEU
301
n
79
LEU
301
A
ARG
302
n
80
ARG
302
A
ALA
303
n
81
ALA
303
A
GLY
304
n
82
GLY
304
A
TRP
305
n
83
TRP
305
A
ASN
306
n
84
ASN
306
A
GLU
307
n
85
GLU
307
A
LEU
308
n
86
LEU
308
A
LEU
309
n
87
LEU
309
A
ILE
310
n
88
ILE
310
A
ALA
311
n
89
ALA
311
A
SER
312
n
90
SER
312
A
PHE
313
n
91
PHE
313
A
SER
314
n
92
SER
314
A
HIS
315
n
93
HIS
315
A
ARG
316
n
94
ARG
316
A
SER
317
n
95
SER
317
A
ILE
318
n
96
ILE
318
A
ALA
319
n
97
ALA
319
A
VAL
320
n
98
VAL
320
A
LYS
321
n
99
LYS
321
A
ASP
322
n
100
ASP
322
A
GLY
323
n
101
GLY
323
A
ILE
324
n
102
ILE
324
A
LEU
325
n
103
LEU
325
A
LEU
326
n
104
LEU
326
A
ALA
327
n
105
ALA
327
A
THR
328
n
106
THR
328
A
GLY
329
n
107
GLY
329
A
LEU
330
n
108
LEU
330
A
HIS
331
n
109
HIS
331
A
VAL
332
n
110
VAL
332
A
HIS
333
n
111
HIS
333
A
ARG
334
n
112
ARG
334
A
ASN
335
n
113
ASN
335
A
SER
336
n
114
SER
336
A
ALA
337
n
115
ALA
337
A
HIS
338
n
116
HIS
338
A
SER
339
n
117
SER
339
A
ALA
340
n
118
ALA
340
A
GLY
341
n
119
GLY
341
A
VAL
342
n
120
VAL
342
A
GLY
343
n
121
GLY
343
A
ALA
344
n
122
ALA
344
A
ILE
345
n
123
ILE
345
A
PHE
346
n
124
PHE
346
A
ASP
347
n
125
ASP
347
A
ARG
348
n
126
ARG
348
A
VAL
349
n
127
VAL
349
A
LEU
350
n
128
LEU
350
A
THR
351
n
129
THR
351
A
GLU
352
n
130
GLU
352
A
LEU
353
n
131
LEU
353
A
VAL
354
n
132
VAL
354
A
SER
355
n
133
SER
355
A
LYS
356
n
134
LYS
356
A
MET
357
n
135
MET
357
A
ARG
358
n
136
ARG
358
A
ASP
359
n
137
ASP
359
A
MET
360
n
138
MET
360
A
GLN
361
n
139
GLN
361
A
MET
362
n
140
MET
362
A
ASP
363
n
141
ASP
363
A
LYS
364
n
142
LYS
364
A
THR
365
n
143
THR
365
A
GLU
366
n
144
GLU
366
A
LEU
367
n
145
LEU
367
A
GLY
368
n
146
GLY
368
A
CYS
369
n
147
CYS
369
A
LEU
370
n
148
LEU
370
A
ARG
371
n
149
ARG
371
A
ALA
372
n
150
ALA
372
A
ILE
373
n
151
ILE
373
A
VAL
374
n
152
VAL
374
A
LEU
375
n
153
LEU
375
A
PHE
376
n
154
PHE
376
A
ASN
377
n
155
ASN
377
A
PRO
378
n
156
PRO
378
A
ASP
379
n
157
ASP
379
A
SER
380
n
158
SER
380
A
LYS
381
n
159
LYS
381
A
GLY
382
n
160
GLY
382
A
LEU
383
n
161
LEU
383
A
SER
384
n
162
SER
384
A
ASN
385
n
163
ASN
385
A
PRO
386
n
164
PRO
386
A
ALA
387
n
165
ALA
387
A
GLU
388
n
166
GLU
388
A
VAL
389
n
167
VAL
389
A
GLU
390
n
168
GLU
390
A
ALA
391
n
169
ALA
391
A
LEU
392
n
170
LEU
392
A
ARG
393
n
171
ARG
393
A
GLU
394
n
172
GLU
394
A
LYS
395
n
173
LYS
395
A
VAL
396
n
174
VAL
396
A
TYR
397
n
175
TYR
397
A
ALA
398
n
176
ALA
398
A
SER
399
n
177
SER
399
A
LEU
400
n
178
LEU
400
A
GLU
401
n
179
GLU
401
A
ALA
402
n
180
ALA
402
A
TYR
403
n
181
TYR
403
A
CYS
404
n
182
CYS
404
A
LYS
405
n
183
LYS
405
A
HIS
406
n
184
HIS
406
A
LYS
407
n
185
LYS
407
A
TYR
408
n
186
TYR
408
A
PRO
409
n
187
PRO
409
A
GLU
410
n
188
GLU
410
A
GLN
411
n
189
GLN
411
A
PRO
412
n
190
PRO
412
A
GLY
413
n
191
GLY
413
A
ARG
414
n
192
ARG
414
A
PHE
415
n
193
PHE
415
A
ALA
416
n
194
ALA
416
A
LYS
417
n
195
LYS
417
A
LEU
418
n
196
LEU
418
A
LEU
419
n
197
LEU
419
A
LEU
420
n
198
LEU
420
A
ARG
421
n
199
ARG
421
A
LEU
422
n
200
LEU
422
A
PRO
423
n
201
PRO
423
A
ALA
424
n
202
ALA
424
A
LEU
425
n
203
LEU
425
A
ARG
426
n
204
ARG
426
A
SER
427
n
205
SER
427
A
ILE
428
n
206
ILE
428
A
GLY
429
n
207
GLY
429
A
LEU
430
n
208
LEU
430
A
LYS
431
n
209
LYS
431
A
CYS
432
n
210
CYS
432
A
LEU
433
n
211
LEU
433
A
GLU
434
n
212
GLU
434
A
HIS
435
n
213
HIS
435
A
LEU
436
n
214
LEU
436
A
PHE
437
n
215
PHE
437
A
PHE
438
n
216
PHE
438
A
PHE
439
n
217
PHE
439
A
LYS
440
n
218
LYS
440
A
LEU
441
n
219
LEU
441
A
ILE
442
n
220
ILE
442
A
GLY
443
n
221
GLY
443
A
ASP
444
n
222
ASP
444
A
THR
445
n
223
THR
445
A
PRO
446
n
224
PRO
446
A
ILE
447
n
225
ILE
447
A
ASP
448
n
226
ASP
448
A
THR
449
n
227
THR
449
A
PHE
450
n
228
PHE
450
A
LEU
451
n
229
LEU
451
A
MET
452
n
230
MET
452
A
GLU
453
n
231
GLU
453
A
MET
454
n
232
MET
454
A
LEU
455
n
233
LEU
455
A
GLU
456
n
234
GLU
456
A
ALA
457
n
235
ALA
457
A
PRO
458
n
236
PRO
458
A
n
237
459
A
n
238
460
A
n
239
461
A
n
240
462
A
LYS
471
n
1
LYS
471
B
HIS
472
n
2
HIS
472
B
LYS
473
n
3
LYS
473
B
ILE
474
n
4
ILE
474
B
LEU
475
n
5
LEU
475
B
HIS
476
n
6
HIS
476
B
ARG
477
n
7
ARG
477
B
LEU
478
n
8
LEU
478
B
LEU
479
n
9
LEU
479
B
GLN
480
n
10
GLN
480
B
ASP
481
n
11
ASP
481
B
n
12
482
B
n
13
483
B
author_defined_assembly
4
tetrameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_775
-y+2,-x+2,-z+1/2
crystal symmetry operation
128.1580000000
128.1580000000
55.1945000000
A
N
ILE
324
A
N
ILE
102
A
O
VAL
332
A
O
VAL
110
1
A
CG
ARG
234
A
CG
ARG
12
0
Y
1
A
CD
ARG
234
A
CD
ARG
12
0
Y
1
A
NE
ARG
234
A
NE
ARG
12
0
Y
1
A
CZ
ARG
234
A
CZ
ARG
12
0
Y
1
A
NH1
ARG
234
A
NH1
ARG
12
0
Y
1
A
NH2
ARG
234
A
NH2
ARG
12
0
Y
1
A
CD
GLU
243
A
CD
GLU
21
0
Y
1
A
OE1
GLU
243
A
OE1
GLU
21
0
Y
1
A
OE2
GLU
243
A
OE2
GLU
21
0
Y
1
A
C
PRO
244
A
C
PRO
22
0
Y
1
A
O
PRO
244
A
O
PRO
22
0
Y
1
A
CD
LYS
321
A
CD
LYS
99
0
Y
1
A
CE
LYS
321
A
CE
LYS
99
0
Y
1
A
NZ
LYS
321
A
NZ
LYS
99
0
Y
1
A
CD
LYS
381
A
CD
LYS
159
0
Y
1
A
CE
LYS
381
A
CE
LYS
159
0
Y
1
A
NZ
LYS
381
A
NZ
LYS
159
0
Y
1
A
CG
GLU
456
A
CG
GLU
234
0
Y
1
A
CD
GLU
456
A
CD
GLU
234
0
Y
1
A
OE1
GLU
456
A
OE1
GLU
234
0
Y
1
A
OE2
GLU
456
A
OE2
GLU
234
0
Y
1
B
CD
LYS
471
B
CD
LYS
1
0
Y
1
B
CE
LYS
471
B
CE
LYS
1
0
Y
1
B
NZ
LYS
471
B
NZ
LYS
1
0
Y
1
A
THR
223
A
THR
1
1
Y
1
A
SER
224
A
SER
2
1
Y
1
A
SER
225
A
SER
3
1
Y
1
A
ALA
226
A
ALA
4
1
Y
1
A
ASN
227
A
ASN
5
1
Y
1
A
GLU
228
A
GLU
6
1
Y
1
A
LYS
245
A
LYS
23
1
Y
1
A
THR
246
A
THR
24
1
Y
1
A
GLU
247
A
GLU
25
1
Y
1
A
THR
248
A
THR
26
1
Y
1
A
TYR
249
A
TYR
27
1
Y
1
A
VAL
250
A
VAL
28
1
Y
1
A
GLU
251
A
GLU
29
1
Y
1
A
ALA
252
A
ALA
30
1
Y
1
A
ASN
253
A
ASN
31
1
Y
1
A
MET
254
A
MET
32
1
Y
1
A
GLY
255
A
GLY
33
1
Y
1
A
LEU
256
A
LEU
34
1
Y
1
A
ASN
257
A
ASN
35
1
Y
1
A
PRO
258
A
PRO
36
1
Y
1
A
SER
259
A
SER
37
1
Y
1
A
SER
260
A
SER
38
1
Y
1
A
PRO
261
A
PRO
39
1
Y
1
A
HIS
459
A
HIS
237
1
Y
1
A
GLN
460
A
GLN
238
1
Y
1
A
MET
461
A
MET
239
1
Y
1
A
THR
462
A
THR
240
1
Y
1
B
SER
482
B
SER
12
1
Y
1
B
SER
483
B
SER
13
1
Y
1
A
A
CG
CD
GLU
GLU
243
243
0.240
0.015
1.515
1.755
N
1
A
A
CA
C
PRO
PRO
244
244
-0.161
0.020
1.524
1.363
N
1
A
A
CG
CD
LYS
LYS
321
321
-0.465
0.034
1.520
1.055
N
1
A
A
CG
CD
LYS
LYS
381
381
-0.482
0.034
1.520
1.038
N
1
B
B
CG
CD
LYS
LYS
471
471
-0.302
0.034
1.520
1.218
N
1
B
B
CD
CE
LYS
LYS
471
471
-0.292
0.025
1.508
1.216
N
1
A
HIS
288
75.12
-3.60
1
A
LEU
353
-117.55
-79.42
65.75
41.876
13.70
0.660
0.000
0.000
0.660
0.000
-1.320
0.926
0.870
0.278
0.206
0.210
0.210
3.000
10.000
226
4831
4.700
100.000
1.00
0.00
RANDOM
1
Isotropic
THROUGHOUT
0.529
0.800
0.800
1.200
PDB ENTRY 1MZN
MAXIMUM LIKELIHOOD
MASK
3.000
10.000
21
1826
27
0
1778
0.006
0.022
1819
1.023
2.002
2469
3.734
5.000
221
34.847
23.684
76
14.445
15.000
318
22.165
15.000
12
0.059
0.200
284
0.002
0.020
1342
0.172
0.200
895
0.291
0.200
1269
0.109
0.200
46
0.169
0.200
41
0.107
0.200
5
0.228
1.500
1117
0.422
2.000
1797
0.399
3.000
702
0.677
4.500
672
0.367
0.296
3.071
17
315
332
20
100.000
57.611
3.000
50.000
2ZXZ
5032
5032
0.102
0.102
1.619
1
33.776
12.300
99.900
0.333
3.00
3.11
481
1.014
12.60
100.00
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.2.0019
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
data reduction
HKL-2000
data scaling
HKL-2000
phasing
AMoRE
Crystal structure of the human RXR alpha ligand binding domain bound to a synthetic agonist compound and a coactivator peptide
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
PRO
231
A
PRO
9
HELX_P
A
ALA
241
A
ALA
19
1
1
11
A
ASP
263
A
ASP
41
HELX_P
A
ILE
286
A
ILE
64
1
2
24
A
PRO
293
A
PRO
71
HELX_P
A
SER
317
A
SER
95
1
3
25
A
ARG
334
A
ARG
112
HELX_P
A
ALA
340
A
ALA
118
1
4
7
A
VAL
342
A
VAL
120
HELX_P
A
LEU
353
A
LEU
131
1
5
12
A
LEU
353
A
LEU
131
HELX_P
A
GLN
361
A
GLN
139
1
6
9
A
ASP
363
A
ASP
141
HELX_P
A
PHE
376
A
PHE
154
1
7
14
A
ASN
385
A
ASN
163
HELX_P
A
TYR
408
A
TYR
186
1
8
24
A
GLY
413
A
GLY
191
HELX_P
A
LEU
420
A
LEU
198
1
9
8
A
ARG
421
A
ARG
199
HELX_P
A
GLY
443
A
GLY
221
1
10
23
A
ASP
448
A
ASP
226
HELX_P
A
LEU
455
A
LEU
233
1
11
8
B
HIS
472
B
HIS
2
HELX_P
B
LEU
479
B
LEU
9
1
12
8
TRANSCRIPTION
transcription regulation, nuclear receptor, Structural Genomics, Structural Genomics Consortium for Research on Gene Expression, SGCGES, Transcription
A
ALA
457
A
ALA
235
1
A
PRO
458
A
PRO
236
0.16
RXRA_HUMAN
UNP
1
223
P19793
TSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLR
AGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKG
LSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
NCOA2_HUMAN
UNP
2
686
Q15596
KHKILHRLLQDSS
223
462
2ZXZ
223
462
P19793
A
1
1
240
686
698
2ZXZ
471
483
Q15596
B
2
1
13
2
anti-parallel
A
GLY
323
A
GLY
101
A
LEU
325
A
LEU
103
A
HIS
331
A
HIS
109
A
HIS
333
A
HIS
111
BINDING SITE FOR RESIDUE P26 A 1
A
P26
1
Software
11
A
ILE
268
A
ILE
46
11
1_555
A
ALA
271
A
ALA
49
11
1_555
A
ALA
272
A
ALA
50
11
1_555
A
GLN
275
A
GLN
53
11
1_555
A
ASN
306
A
ASN
84
11
1_555
A
ILE
310
A
ILE
88
11
1_555
A
PHE
313
A
PHE
91
11
1_555
A
ARG
316
A
ARG
94
11
1_555
A
LEU
326
A
LEU
104
11
1_555
A
ALA
327
A
ALA
105
11
1_555
A
CYS
432
A
CYS
210
11
1_555
96
P 43 21 2