0.015931
0.009198
0.000000
0.000000
0.018396
0.000000
0.000000
0.000000
0.023240
0.00000
0.00000
0.00000
Takusagawa, F.
Takusagawa, K.T.
Carlson, R.G.
Weaver, R.F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
62.770
62.770
43.030
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H11 N O2
117.146
D-VALINE
D-peptide linking
C6 H13 N O2
131.173
n
N-METHYLVALINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C16 H11 F N2 O4
314.268
2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO-8-FLUORO-3-OXOPHENOXAZINE
8-FLUORO-PHENOXAZINE
non-polymer
C16 H12 N2 O4
296.277
2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO-PHENOXAZIN-3-ONE
PHENOXAZINE
non-polymer
C3 H7 N O2
89.093
n
SARCOSINE
peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
N
120
N
N
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
R
C
N
146
N
C
N
147
N
C
N
148
N
C
N
149
N
C
N
150
N
O
N
151
N
O
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
N
N
164
N
C
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
C
N
203
N
C
N
204
N
O
N
205
N
C
N
206
N
N
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
O
Y
211
N
C
Y
212
N
C
Y
213
N
C
N
214
N
F
Y
215
N
C
N
216
N
C
N
217
N
O
N
218
N
N
N
219
N
C
N
220
N
C
Y
221
N
C
Y
222
N
C
N
223
N
C
N
224
N
C
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
Y
236
N
C
N
237
N
C
N
238
N
O
Y
239
N
C
N
240
N
N
Y
241
N
C
N
242
N
O
Y
243
N
C
Y
244
N
O
Y
245
N
C
Y
246
N
C
Y
247
N
C
Y
248
N
C
N
249
N
C
N
250
N
O
Y
251
N
N
Y
252
N
C
Y
253
N
C
Y
254
N
C
Y
255
N
C
N
256
N
C
N
257
N
C
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
O
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
N
N
284
S
C
N
285
N
C
N
286
N
O
N
287
R
C
N
288
N
O
N
289
N
C
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
doub
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
N
217
N
doub
N
218
N
sing
N
219
N
sing
N
220
N
sing
Y
221
N
doub
Y
222
N
sing
N
223
N
sing
Y
224
N
sing
N
225
N
sing
N
226
N
sing
Y
227
N
doub
N
228
N
sing
Y
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
doub
N
233
N
sing
N
234
N
sing
Y
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
Y
243
N
doub
Y
244
N
sing
N
245
N
doub
N
246
N
sing
N
247
N
sing
Y
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
doub
Y
252
N
sing
Y
253
N
doub
N
254
N
sing
Y
255
N
sing
Y
256
N
sing
Y
257
N
doub
Y
258
N
sing
N
259
N
sing
Y
260
N
sing
N
261
N
sing
Y
262
N
doub
N
263
N
sing
N
264
N
sing
Y
265
N
sing
N
266
N
doub
N
267
N
sing
Y
268
N
doub
Y
269
N
sing
Y
270
N
sing
Y
271
N
doub
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
UK
Bioorg.Med.Chem.
BMECEP
1200
0968-0896
5
1197
10.1016/S0968-0896(97)00062-X
9222513
Selectivity of F8-Actinomycin D for RNA:DNA Hybrids and its Anti-Leukemia Activity.
1997
10.2210/pdb316d/pdb
pdb_0000316d
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
299.00
1
IMAGE PLATE
1995-03-01
MACSCIENCE
GRAPHITE 002
SINGLE WAVELENGTH
M
x-ray
1
1.0
ROTATING ANODE
RIGAKU RU200
2426.617
DNA (5'-D(*GP*AP*AP*GP*CP*TP*TP*C)-3')
2
syn
polymer
1277.438
8-FLUORO-ACTINOMYCIN D
1
nat
polymer
DACTINOMYCIN
no
no
(DG)(DA)(DA)(DG)(DC)(DT)(DT)(DC)
GAAGCTTC
A,B
polydeoxyribonucleotide
no
yes
T(DVA)P(SAR)(MVA)(PXF)T(DVA)P(SAR)(MVA)
TVPGVXTVPGV
C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1890
STREPTOMYCES ANTIBIOTICUS
5.04
75.60
7.00
PH 7.00, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 299.00K
WATER
1
MPD
1
MGCL2
1
CACODYLATE
1
SPERMINE_HCL
1
WATER
2
MPD
2
3.115
1
19
A
1
B
16
-1.339
A_DG1:DC16_B
1
-2.871
-0.065
-0.027
-0.141
1.519
1
20
A
2
B
15
-7.728
A_DA2:DT15_B
2
-2.560
-0.062
-0.032
-0.112
0.642
1
20
A
3
B
14
-4.552
A_DA3:DT14_B
3
-4.678
-0.251
0.124
-0.172
-0.078
1
19
A
4
B
13
-3.301
A_DG4:DC13_B
4
3.583
-0.142
0.208
-0.179
-4.107
1
19
A
5
B
12
-1.472
A_DC5:DG12_B
5
3.146
0.203
0.574
-0.217
1.718
1
20
A
6
B
11
-6.493
A_DT6:DA11_B
6
0.253
-0.051
-0.103
-0.066
-4.152
1
20
A
7
B
10
-7.738
A_DT7:DA10_B
7
-2.008
0.056
-0.013
-0.098
5.763
1
19
A
8
B
9
-1.881
A_DC8:DG9_B
8
-5.473
0.061
0.076
-0.148
3.728
36.729
A
A
1
2
-4.084
B
B
16
15
3.582
-2.569
-1.662
-0.816
AA_DG1DA2:DT15DC16_BB
1
-2.426
3.856
36.564
-0.903
2.267
3.378
46.382
A
A
2
3
17.363
B
B
15
14
3.566
13.482
0.047
-0.119
AA_DA2DA3:DT14DT15_BB
2
-4.085
5.261
44.305
-1.394
-0.436
3.554
32.613
A
A
3
4
-1.221
B
B
14
13
3.505
-0.686
-1.104
-0.227
AA_DA3DG4:DC13DT14_BB
3
-1.473
2.625
32.573
-0.275
1.689
6.790
12.072
A
A
4
5
-0.323
B
B
13
12
7.300
-0.067
0.279
0.304
AA_DG4DC5:DG12DC13_BB
4
-4.030
19.537
11.381
1.634
-12.798
2.451
21.602
A
A
5
6
33.876
B
B
12
11
3.516
11.722
-0.894
0.067
AA_DC5DT6:DA11DG12_BB
5
7.315
-21.142
16.646
-4.662
5.406
3.781
31.291
A
A
6
7
-0.527
B
B
11
10
3.764
-0.284
-0.360
-1.252
AA_DT6DT7:DA10DA11_BB
6
-0.634
1.175
31.283
-2.260
0.529
3.170
32.974
A
A
7
8
2.811
B
B
10
9
3.276
1.593
0.920
-0.319
AA_DT7DC8:DG9DA10_BB
7
-2.799
4.938
32.820
-0.830
-2.091
chem_comp
pdbx_validate_polymer_linkage
database_2
struct_conn
struct_ref_seq_dif
atom_site
chem_comp_atom
chem_comp_bond
struct_conn
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Atomic model
Database references
Derived calculations
Non-polymer description
Structure summary
Other
Advisory
Data collection
Structure summary
Database references
Derived calculations
Atomic model
Data collection
Derived calculations
Refinement description
1
0
1997-11-05
1
1
2011-06-14
1
2
2011-07-13
1
3
2011-07-27
1
4
2012-12-12
1
5
2018-04-25
1
6
2022-12-21
2
0
2023-11-15
2
1
2024-04-03
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_atom_site.auth_atom_id
_atom_site.label_atom_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr2_label_atom_id
CRYSTAL STRUCTURE OF ACTINOMYCIN Z3
CRYSTAL STRUCTURE OF N8-ACTINOMYCIN D COMPLEXED WITH D(GAAGCTTC)2
CRYSTAL STRUCTURE OF 7-AMINOACTINOMYCIN D COMPLEXED WITH NON-COMPLEMENTARY DNA
CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CGATCGATCG)2
CRYSTAL STRUCTURE OF ACTINOMYCIN D
SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (AAGCGCTT)2
CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2
CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2
SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2
SOLUTION STRUCTURE OF ACTNIOMYCIN D COMPLEXED WITH MISMATCHED DNA (GTCACCGAC)
SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GATGCTTC)2
CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (ATGCTGCAT)2
CRYSTAL STRUCTURE OF 7-AMINO-ACTINOMYCIN D COMPLEXED WITH A NON-COMPLEMENTARY DNA (TTAGT)2
SOLUTIOM STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CCGTTTTGTGG)2
CRYSTAL STRUCTURE OF ACTINOMYCIN X2
NDB
Y
NDB
1997-03-05
REL
ACTINOMYCIN D IS A BICYCLIC PEPTIDE, A MEMBER OF THE
ACTINOMYCIN FAMILY.
HERE, ACTINOMYCIN D IS REPRESENTED BY THE SEQUENCE (SEQRES)
209D
DDH051
PDB
experimental model
Antibiotic
ACTINOMYCIN D CONSISTS OF TWO PENTAMER
RINGS LINKED BY THE CHROMOPHORE (PXF)
THE CHROMOPHORE PXF IS A MODIFIED PXZ WITH
C-F REPLACING C-H IN POSITION 8 OF THE
PHENOXAZONE RING.
8-Fluoro-Actinomycin D
Polypeptide
DG
1
n
1
DG
1
A
DA
2
n
2
DA
2
A
DA
3
n
3
DA
3
A
DG
4
n
4
DG
4
A
DC
5
n
5
DC
5
A
DT
6
n
6
DT
6
A
DT
7
n
7
DT
7
A
DC
8
n
8
DC
8
A
DG
9
n
1
DG
9
B
DA
10
n
2
DA
10
B
DA
11
n
3
DA
11
B
DG
12
n
4
DG
12
B
DC
13
n
5
DC
13
B
DT
14
n
6
DT
14
B
DT
15
n
7
DT
15
B
DC
16
n
8
DC
16
B
THR
1
n
1
THR
1
C
DVA
2
n
2
DVA
2
C
PRO
3
n
3
PRO
3
C
SAR
4
n
4
SAR
4
C
MVA
5
n
5
MVA
5
C
PXF
6
n
6
PXF
6
C
THR
7
n
7
THR
7
C
DVA
8
n
8
DVA
8
C
PRO
9
n
9
PRO
9
C
SAR
10
n
10
SAR
10
C
MVA
11
n
11
MVA
11
C
author_defined_assembly
3
trimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
B
DG
12
0.065
SIDE CHAIN
1
3.11
0.30
108.30
111.41
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
1
10.91
1.60
120.90
131.81
A
A
A
P
O5'
C5'
DA
DA
DA
2
2
2
N
1
1.93
0.30
108.30
110.23
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
1
-6.88
0.70
102.20
95.32
A
A
A
C4'
C3'
C2'
DG
DG
DG
4
4
4
N
1
6.64
0.30
108.30
114.94
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
1
5.71
0.30
108.30
114.01
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
3.30
0.30
108.30
111.60
A
A
A
O4'
C1'
N1
DT
DT
DT
6
6
6
N
1
-4.35
0.60
122.90
118.55
A
A
A
C6
C5
C7
DT
DT
DT
6
6
6
N
1
3.25
0.30
108.30
111.55
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
1
3.73
0.60
118.90
122.63
A
A
A
N1
C2
O2
DC
DC
DC
8
8
8
N
1
1.81
0.30
108.30
110.11
B
B
B
O4'
C1'
N9
DG
DG
DG
9
9
9
N
1
8.55
1.20
119.70
128.25
B
B
B
C3'
O3'
P
DG
DG
DA
9
9
10
Y
1
3.67
0.30
108.30
111.97
B
B
B
O4'
C1'
N9
DA
DA
DA
10
10
10
N
1
12.34
1.20
119.70
132.04
B
B
B
C3'
O3'
P
DA
DA
DA
10
10
11
Y
1
3.19
0.30
108.30
111.49
B
B
B
O4'
C1'
N9
DA
DA
DA
11
11
11
N
1
2.47
0.30
108.30
110.77
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
1
10.88
1.20
119.70
130.58
B
B
B
C3'
O3'
P
DG
DG
DC
12
12
13
Y
1
8.46
0.30
108.30
116.76
B
B
B
O4'
C1'
N1
DC
DC
DC
13
13
13
N
1
4.18
0.60
118.90
123.08
B
B
B
N1
C2
O2
DC
DC
DC
13
13
13
N
1
4.29
0.30
108.30
112.59
B
B
B
O4'
C1'
N1
DT
DT
DT
14
14
14
N
1
-4.06
0.60
122.30
118.24
B
B
B
N3
C2
O2
DT
DT
DT
14
14
14
N
1
-4.10
0.60
122.90
118.80
B
B
B
C6
C5
C7
DT
DT
DT
14
14
14
N
1
-4.50
0.70
102.20
97.70
B
B
B
C4'
C3'
C2'
DT
DT
DT
15
15
15
N
1
1.88
0.30
108.30
110.18
B
B
B
O4'
C1'
N1
DT
DT
DT
15
15
15
N
1
-3.80
0.60
122.90
119.10
B
B
B
C6
C5
C7
DT
DT
DT
15
15
15
N
1
-6.14
1.00
110.10
103.96
B
B
B
C1'
O4'
C4'
DC
DC
DC
16
16
16
N
1
2.75
0.30
108.30
111.05
B
B
B
O4'
C1'
N1
DC
DC
DC
16
16
16
N
38.00
0.261
0.212
0.212
3.00
7.00
184
1839
10.000
95.0
1
0.000
MOLECULAR REPLACEMENT
DDH051
TR
isotropic
3.00
7.00
0
413
0
322
91
0.012
3.40
24.00
0.2610
3.20
1
10.00
100.00
fix
3.000
7.000
316D
1839
0.000
0.07500
0.07500
1
95.0
0.00180
3.00
3.20
2.200
0.00180
1
90.0
model building
X-PLOR
refinement
X-PLOR
data reduction
ELMS
data scaling
KUAVST
data scaling
KUMDS
phasing
X-PLOR
Selectivity of F8-actinomycin D for RNA:DNA hybrids and its anti-leukemia activity
1
N
N
1
N
N
2
N
N
covale
1.332
both
C
THR
1
C
C
THR
1
1_555
C
DVA
2
C
N
DVA
2
1_555
covale
1.389
one
C
THR
1
C
OG1
THR
1
1_555
C
MVA
5
C
C
MVA
5
1_555
covale
1.335
one
C
THR
1
C
N
THR
1
1_555
C
PXF
6
C
C0
PXF
6
1_555
covale
1.342
both
C
DVA
2
C
C
DVA
2
1_555
C
PRO
3
C
N
PRO
3
1_555
covale
1.346
both
C
PRO
3
C
C
PRO
3
1_555
C
SAR
4
C
N
SAR
4
1_555
covale
1.347
both
C
SAR
4
C
C
SAR
4
1_555
C
MVA
5
C
N
MVA
5
1_555
covale
1.347
one
C
PXF
6
C
C0'
PXF
6
1_555
C
THR
7
C
N
THR
7
1_555
covale
1.329
both
C
THR
7
C
C
THR
7
1_555
C
DVA
8
C
N
DVA
8
1_555
covale
1.388
one
C
THR
7
C
OG1
THR
7
1_555
C
MVA
11
C
C
MVA
11
1_555
covale
1.341
both
C
DVA
8
C
C
DVA
8
1_555
C
PRO
9
C
N
PRO
9
1_555
covale
1.344
both
C
PRO
9
C
C
PRO
9
1_555
C
SAR
10
C
N
SAR
10
1_555
covale
1.350
both
C
SAR
10
C
C
SAR
10
1_555
C
MVA
11
C
N
MVA
11
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
B
DC
16
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
B
DC
16
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
B
DC
16
B
N4
DC
8
1_555
hydrog
WATSON-CRICK
A
DA
2
A
N1
DA
2
1_555
B
DT
15
B
N3
DT
7
1_555
hydrog
WATSON-CRICK
A
DA
2
A
N6
DA
2
1_555
B
DT
15
B
O4
DT
7
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N1
DA
3
1_555
B
DT
14
B
N3
DT
6
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N6
DA
3
1_555
B
DT
14
B
O4
DT
6
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
DC
13
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
DC
13
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
DC
13
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
B
DG
12
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
B
DG
12
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
B
DG
12
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DT
6
A
N3
DT
6
1_555
B
DA
11
B
N1
DA
3
1_555
hydrog
WATSON-CRICK
A
DT
6
A
O4
DT
6
1_555
B
DA
11
B
N6
DA
3
1_555
hydrog
WATSON-CRICK
A
DT
7
A
N3
DT
7
1_555
B
DA
10
B
N1
DA
2
1_555
hydrog
WATSON-CRICK
A
DT
7
A
O4
DT
7
1_555
B
DA
10
B
N6
DA
2
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N3
DC
8
1_555
B
DG
9
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N4
DC
8
1_555
B
DG
9
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
8
A
O2
DC
8
1_555
B
DG
9
B
N2
DG
1
1_555
DNA/ANTIBIOTIC
ACTINOMYCIN D, ACTINOMYCIN, F8-ACTINOMYCIN, ANTI CANCER, ANTITUMOR, CHROMOPHORE, DEPSIPEPTIDE, DNA-ANTIBIOTIC COMPLEX, ANTIBIOTIC
C
DVA
2
C
DVA
2
1
C
PRO
3
C
PRO
3
1.84
C
PRO
3
C
PRO
3
1
C
SAR
4
C
SAR
4
1.27
C
DVA
8
C
DVA
8
1
C
PRO
9
C
PRO
9
0.51
C
PRO
9
C
PRO
9
1
C
SAR
10
C
SAR
10
-4.67
316D
PDB
1
316D
NOR00228
NOR
2
NOR00228
1
8
316D
1
8
316D
A
1
1
8
9
16
316D
9
16
316D
B
1
1
8
1
11
316D
1
11
NOR00228
C
2
1
11
3
PXZ
chromophore
PXF
6
316D
C
NOR00228
NOR
6
6
BINDING SITE FOR CHAIN C OF 8-FLUORO-ACTINOMYCIN D
Software
8
A
DG
4
A
DG
4
8
1_555
A
DC
5
A
DC
5
8
1_555
A
DT
6
A
DT
6
8
1_555
B
DA
11
B
DA
3
8
1_555
B
DG
12
B
DG
4
8
1_555
B
DC
13
B
DC
5
8
1_555
B
DT
14
B
DT
6
8
1_555
B
DT
15
B
DT
7
8
1_555
152
P 31 2 1