data_338D # _entry.id 338D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 338D pdb_0000338d 10.2210/pdb338d/pdb RCSB ADHB92 ? ? WWPDB D_1000178807 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-07-21 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 338D _pdbx_database_status.recvd_initial_deposition_date 1997-06-26 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mooers, B.H.M.' 1 'Eichman, B.F.' 2 'Ho, P.S.' 3 # _citation.id primary _citation.title 'Structural Parameters from Single-Crystal Structures for Accurate Models of A-DNA' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mooers, B.H.M.' 1 ? primary 'Eichman, B.F.' 2 ? primary 'Ho, P.S.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*(5CM)P*GP*CP*GP*CP*GP*C)-3') ; 2442.620 1 ? ? ? ? 2 water nat water 18.015 18 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(5CM)(DG)(DC)(DG)(DC)(DG)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GCGCGCGC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 5CM n 1 3 DG n 1 4 DC n 1 5 DG n 1 6 DC n 1 7 DG n 1 8 DC n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 5CM 2 2 2 5CM +C A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DG 5 5 5 DG G A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DG 7 7 7 DG G A . n A 1 8 DC 8 8 8 DC C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 9 9 HOH HOH A . B 2 HOH 2 10 10 HOH HOH A . B 2 HOH 3 11 11 HOH HOH A . B 2 HOH 4 12 12 HOH HOH A . B 2 HOH 5 13 13 HOH HOH A . B 2 HOH 6 14 14 HOH HOH A . B 2 HOH 7 15 15 HOH HOH A . B 2 HOH 8 16 16 HOH HOH A . B 2 HOH 9 17 17 HOH HOH A . B 2 HOH 10 18 18 HOH HOH A . B 2 HOH 11 19 19 HOH HOH A . B 2 HOH 12 20 20 HOH HOH A . B 2 HOH 13 21 21 HOH HOH A . B 2 HOH 14 22 22 HOH HOH A . B 2 HOH 15 23 23 HOH HOH A . B 2 HOH 16 24 24 HOH HOH A . B 2 HOH 17 25 25 HOH HOH A . B 2 HOH 18 26 26 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XTALVIEW refinement . ? 1 X-PLOR 'model building' . ? 2 X-PLOR refinement 3.1 ? 3 SAINT 'data reduction' . ? 4 SAINT 'data scaling' . ? 5 X-PLOR phasing . ? 6 # _cell.entry_id 338D _cell.length_a 43.070 _cell.length_b 43.070 _cell.length_c 25.360 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 338D _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # _exptl.entry_id 338D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.41 _exptl_crystal.density_percent_sol 48.91 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'pH 7.00, VAPOR DIFFUSION' _exptl_crystal_grow.pdbx_pH_range ? # _exptl_crystal_grow_comp.crystal_id 1 _exptl_crystal_grow_comp.id 1 _exptl_crystal_grow_comp.sol_id 1 _exptl_crystal_grow_comp.name WATER _exptl_crystal_grow_comp.volume ? _exptl_crystal_grow_comp.conc ? _exptl_crystal_grow_comp.details ? # _diffrn.id 1 _diffrn.ambient_temp 298.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type 'SIEMENS HI-STAR' _diffrn_detector.pdbx_collection_date 1996-05-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 338D _reflns.observed_criterion_sigma_I 2.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 15.300 _reflns.d_resolution_high 1.680 _reflns.number_obs 2847 _reflns.number_all ? _reflns.percent_possible_obs 86.030 _reflns.pdbx_Rmerge_I_obs 0.03 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.500 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 338D _refine.ls_number_reflns_obs 1442 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 1.850 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.202 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.202 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 24.91 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 161 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 18 _refine_hist.number_atoms_total 180 _refine_hist.d_res_high 1.850 _refine_hist.d_res_low 8.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.49 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_xplor_file.serial_no 1 _pdbx_xplor_file.param_file PAR.DNA _pdbx_xplor_file.topol_file TOP.DNA _pdbx_xplor_file.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 338D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 338D _struct.title 'STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 338D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'A-DNA, DOUBLE HELIX, MODIFIED, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 338D _struct_ref.pdbx_db_accession 338D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 338D _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 338D _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 25.3600000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 1 "O3'" ? ? ? 1_555 A 5CM 2 P ? ? A DG 1 A 5CM 2 1_555 ? ? ? ? ? ? ? 1.594 ? ? covale2 covale both ? A 5CM 2 "O3'" ? ? ? 1_555 A DG 3 P ? ? A 5CM 2 A DG 3 1_555 ? ? ? ? ? ? ? 1.608 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A 5CM 2 N3 ? ? ? 1_555 A DG 7 N1 ? ? A 5CM 2 A DG 7 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A 5CM 2 N4 ? ? ? 1_555 A DG 7 O6 ? ? A 5CM 2 A DG 7 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A 5CM 2 O2 ? ? ? 1_555 A DG 7 N2 ? ? A 5CM 2 A DG 7 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 3 A DC 6 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 3 A DC 6 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 3 A DC 6 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 N3 ? ? ? 1_555 A DG 5 N1 ? ? A DC 4 A DG 5 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DG 5 O6 ? ? A DC 4 A DG 5 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 4 O2 ? ? ? 1_555 A DG 5 N2 ? ? A DC 4 A DG 5 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DC 4 N3 ? ? A DG 5 A DC 4 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DC 4 O2 ? ? A DG 5 A DC 4 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DC 4 N4 ? ? A DG 5 A DC 4 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 6 A DG 3 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 6 A DG 3 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 6 A DG 3 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A 5CM 2 N3 ? ? A DG 7 A 5CM 2 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A 5CM 2 O2 ? ? A DG 7 A 5CM 2 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A 5CM 2 N4 ? ? A DG 7 A 5CM 2 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id 5CM _pdbx_struct_mod_residue.label_seq_id 2 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id 5CM _pdbx_struct_mod_residue.auth_seq_id 2 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DC _pdbx_struct_mod_residue.details ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5CM N1 N N N 1 5CM C2 C N N 2 5CM N3 N N N 3 5CM C4 C N N 4 5CM C5 C N N 5 5CM C5A C N N 6 5CM C6 C N N 7 5CM O2 O N N 8 5CM N4 N N N 9 5CM "C1'" C N R 10 5CM "C2'" C N N 11 5CM "C3'" C N S 12 5CM "C4'" C N R 13 5CM "O4'" O N N 14 5CM "O3'" O N N 15 5CM "C5'" C N N 16 5CM "O5'" O N N 17 5CM P P N N 18 5CM OP1 O N N 19 5CM OP2 O N N 20 5CM OP3 O N N 21 5CM H5A1 H N N 22 5CM H5A2 H N N 23 5CM H5A3 H N N 24 5CM H6 H N N 25 5CM HN41 H N N 26 5CM HN42 H N N 27 5CM "H1'" H N N 28 5CM "H2'" H N N 29 5CM "H2''" H N N 30 5CM "H3'" H N N 31 5CM "H4'" H N N 32 5CM "HO3'" H N N 33 5CM "H5'" H N N 34 5CM "H5''" H N N 35 5CM HOP2 H N N 36 5CM HOP3 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 HOH O O N N 109 HOH H1 H N N 110 HOH H2 H N N 111 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5CM N1 C2 sing N N 1 5CM N1 C6 sing N N 2 5CM N1 "C1'" sing N N 3 5CM C2 N3 sing N N 4 5CM C2 O2 doub N N 5 5CM N3 C4 doub N N 6 5CM C4 C5 sing N N 7 5CM C4 N4 sing N N 8 5CM C5 C5A sing N N 9 5CM C5 C6 doub N N 10 5CM C5A H5A1 sing N N 11 5CM C5A H5A2 sing N N 12 5CM C5A H5A3 sing N N 13 5CM C6 H6 sing N N 14 5CM N4 HN41 sing N N 15 5CM N4 HN42 sing N N 16 5CM "C1'" "C2'" sing N N 17 5CM "C1'" "O4'" sing N N 18 5CM "C1'" "H1'" sing N N 19 5CM "C2'" "C3'" sing N N 20 5CM "C2'" "H2'" sing N N 21 5CM "C2'" "H2''" sing N N 22 5CM "C3'" "C4'" sing N N 23 5CM "C3'" "O3'" sing N N 24 5CM "C3'" "H3'" sing N N 25 5CM "C4'" "O4'" sing N N 26 5CM "C4'" "C5'" sing N N 27 5CM "C4'" "H4'" sing N N 28 5CM "O3'" "HO3'" sing N N 29 5CM "C5'" "O5'" sing N N 30 5CM "C5'" "H5'" sing N N 31 5CM "C5'" "H5''" sing N N 32 5CM "O5'" P sing N N 33 5CM P OP1 doub N N 34 5CM P OP2 sing N N 35 5CM P OP3 sing N N 36 5CM OP2 HOP2 sing N N 37 5CM OP3 HOP3 sing N N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 HOH O H1 sing N N 113 HOH O H2 sing N N 114 # _ndb_struct_conf_na.entry_id 338D _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 8 7_556 -0.366 -0.164 -0.157 -6.339 -7.480 -1.933 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1 1 A 5CM 2 1_555 A DG 7 7_556 0.326 -0.022 0.048 5.747 -11.199 1.554 2 A_5CM2:DG7_A A 2 ? A 7 ? 19 1 1 A DG 3 1_555 A DC 6 7_556 -0.317 -0.168 -0.039 -6.576 -13.111 2.449 3 A_DG3:DC6_A A 3 ? A 6 ? 19 1 1 A DC 4 1_555 A DG 5 7_556 0.158 -0.042 0.152 -4.815 -5.826 4.396 4 A_DC4:DG5_A A 4 ? A 5 ? 19 1 1 A DG 5 1_555 A DC 4 7_556 -0.158 -0.042 0.152 4.815 -5.826 4.396 5 A_DG5:DC4_A A 5 ? A 4 ? 19 1 1 A DC 6 1_555 A DG 3 7_556 0.317 -0.168 -0.039 6.576 -13.111 2.449 6 A_DC6:DG3_A A 6 ? A 3 ? 19 1 1 A DG 7 1_555 A 5CM 2 7_556 -0.326 -0.022 0.048 -5.747 -11.199 1.554 7 A_DG7:5CM2_A A 7 ? A 2 ? 19 1 1 A DC 8 1_555 A DG 1 7_556 0.366 -0.164 -0.157 6.339 -7.480 -1.933 8 A_DC8:DG1_A A 8 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 8 7_556 A 5CM 2 1_555 A DG 7 7_556 0.287 -1.261 3.126 -2.725 4.486 33.308 -2.852 -0.905 2.904 7.766 4.717 33.707 1 AA_DG15CM2:DG7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ? 1 A 5CM 2 1_555 A DG 7 7_556 A DG 3 1_555 A DC 6 7_556 -0.057 -1.646 3.606 0.833 10.792 29.582 -5.090 0.265 2.842 20.300 -1.568 31.458 2 AA_5CM2DG3:DC6DG7_AA A 2 ? A 7 ? A 3 ? A 6 ? 1 A DG 3 1_555 A DC 6 7_556 A DC 4 1_555 A DG 5 7_556 0.086 -1.323 3.309 -1.808 2.137 38.309 -2.278 -0.356 3.226 3.251 2.751 38.407 3 AA_DG3DC4:DG5DC6_AA A 3 ? A 6 ? A 4 ? A 5 ? 1 A DC 4 1_555 A DG 5 7_556 A DG 5 1_555 A DC 4 7_556 0.000 -1.970 3.155 0.000 1.519 21.351 -5.886 0.000 3.009 4.094 0.000 21.404 4 AA_DC4DG5:DC4DG5_AA A 4 ? A 5 ? A 5 ? A 4 ? 1 A DG 5 1_555 A DC 4 7_556 A DC 6 1_555 A DG 3 7_556 -0.086 -1.323 3.309 1.808 2.137 38.309 -2.278 0.356 3.226 3.251 -2.751 38.407 5 AA_DG5DC6:DG3DC4_AA A 5 ? A 4 ? A 6 ? A 3 ? 1 A DC 6 1_555 A DG 3 7_556 A DG 7 1_555 A 5CM 2 7_556 0.057 -1.646 3.606 -0.833 10.792 29.582 -5.090 -0.265 2.842 20.300 1.568 31.458 6 AA_DC6DG7:5CM2DG3_AA A 6 ? A 3 ? A 7 ? A 2 ? 1 A DG 7 1_555 A 5CM 2 7_556 A DC 8 1_555 A DG 1 7_556 -0.287 -1.261 3.126 2.725 4.486 33.308 -2.852 0.905 2.904 7.766 -4.717 33.707 7 AA_DG7DC8:DG15CM2_AA A 7 ? A 2 ? A 8 ? A 1 ? # _atom_sites.entry_id 338D _atom_sites.fract_transf_matrix[1][1] 0.023218 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023218 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.039432 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? 35.684 45.254 6.898 1.00 26.87 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? 35.893 46.378 7.774 1.00 26.50 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? 34.658 47.040 8.343 1.00 22.76 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? 33.543 47.022 7.429 1.00 22.54 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? 34.153 46.332 9.582 1.00 23.49 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? 34.850 46.819 10.720 1.00 27.34 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? 32.711 46.782 9.621 1.00 21.29 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? 32.347 46.759 8.149 1.00 22.53 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? 31.824 45.480 7.686 1.00 24.66 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? 32.458 44.593 6.853 1.00 24.27 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? 31.736 43.542 6.575 1.00 23.32 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? 30.551 43.744 7.268 1.00 24.86 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? 29.356 42.983 7.293 1.00 22.55 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? 29.113 41.915 6.738 1.00 22.17 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? 28.382 43.585 8.071 1.00 22.19 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? 28.537 44.757 8.750 1.00 21.93 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? 27.504 45.166 9.475 1.00 20.80 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? 29.631 45.485 8.732 1.00 24.79 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? 30.595 44.928 7.974 1.00 25.09 ? 1 DG A C4 1 HETATM 20 N N1 . 5CM A 1 2 ? 30.548 43.580 11.670 1.00 24.47 ? 2 5CM A N1 1 HETATM 21 C C2 . 5CM A 1 2 ? 29.512 42.706 11.420 1.00 23.87 ? 2 5CM A C2 1 HETATM 22 N N3 . 5CM A 1 2 ? 29.701 41.683 10.572 1.00 21.68 ? 2 5CM A N3 1 HETATM 23 C C4 . 5CM A 1 2 ? 30.881 41.515 9.987 1.00 21.89 ? 2 5CM A C4 1 HETATM 24 C C5 . 5CM A 1 2 ? 31.966 42.394 10.224 1.00 22.81 ? 2 5CM A C5 1 HETATM 25 C C5A . 5CM A 1 2 ? 33.260 42.144 9.520 1.00 21.57 ? 2 5CM A C5A 1 HETATM 26 C C6 . 5CM A 1 2 ? 31.761 43.408 11.069 1.00 22.11 ? 2 5CM A C6 1 HETATM 27 O O2 . 5CM A 1 2 ? 28.433 42.891 11.996 1.00 24.97 ? 2 5CM A O2 1 HETATM 28 N N4 . 5CM A 1 2 ? 31.024 40.481 9.163 1.00 22.15 ? 2 5CM A N4 1 HETATM 29 C "C1'" . 5CM A 1 2 ? 30.269 44.687 12.589 1.00 27.89 ? 2 5CM A "C1'" 1 HETATM 30 C "C2'" . 5CM A 1 2 ? 30.379 44.279 14.049 1.00 27.31 ? 2 5CM A "C2'" 1 HETATM 31 C "C3'" . 5CM A 1 2 ? 31.813 44.655 14.349 1.00 30.05 ? 2 5CM A "C3'" 1 HETATM 32 C "C4'" . 5CM A 1 2 ? 31.913 45.972 13.598 1.00 29.22 ? 2 5CM A "C4'" 1 HETATM 33 O "O4'" . 5CM A 1 2 ? 31.220 45.726 12.359 1.00 29.24 ? 2 5CM A "O4'" 1 HETATM 34 O "O3'" . 5CM A 1 2 ? 31.990 44.877 15.745 1.00 36.96 ? 2 5CM A "O3'" 1 HETATM 35 C "C5'" . 5CM A 1 2 ? 33.333 46.429 13.367 1.00 27.08 ? 2 5CM A "C5'" 1 HETATM 36 O "O5'" . 5CM A 1 2 ? 34.043 45.424 12.664 1.00 28.62 ? 2 5CM A "O5'" 1 HETATM 37 P P . 5CM A 1 2 ? 35.340 45.785 11.830 1.00 28.37 ? 2 5CM A P 1 HETATM 38 O OP1 . 5CM A 1 2 ? 36.250 46.479 12.757 1.00 33.89 ? 2 5CM A OP1 1 HETATM 39 O OP2 . 5CM A 1 2 ? 35.775 44.565 11.120 1.00 28.44 ? 2 5CM A OP2 1 ATOM 40 P P . DG A 1 3 ? 32.293 43.630 16.714 1.00 39.70 ? 3 DG A P 1 ATOM 41 O OP1 . DG A 1 3 ? 32.473 44.238 18.052 1.00 42.63 ? 3 DG A OP1 1 ATOM 42 O OP2 . DG A 1 3 ? 33.369 42.776 16.130 1.00 39.96 ? 3 DG A OP2 1 ATOM 43 O "O5'" . DG A 1 3 ? 30.958 42.764 16.684 1.00 37.99 ? 3 DG A "O5'" 1 ATOM 44 C "C5'" . DG A 1 3 ? 29.924 42.963 17.642 1.00 33.28 ? 3 DG A "C5'" 1 ATOM 45 C "C4'" . DG A 1 3 ? 28.807 41.982 17.382 1.00 34.46 ? 3 DG A "C4'" 1 ATOM 46 O "O4'" . DG A 1 3 ? 28.559 41.909 15.966 1.00 33.91 ? 3 DG A "O4'" 1 ATOM 47 C "C3'" . DG A 1 3 ? 29.111 40.549 17.788 1.00 34.77 ? 3 DG A "C3'" 1 ATOM 48 O "O3'" . DG A 1 3 ? 28.765 40.324 19.154 1.00 37.90 ? 3 DG A "O3'" 1 ATOM 49 C "C2'" . DG A 1 3 ? 28.099 39.801 16.947 1.00 32.26 ? 3 DG A "C2'" 1 ATOM 50 C "C1'" . DG A 1 3 ? 28.077 40.604 15.660 1.00 29.84 ? 3 DG A "C1'" 1 ATOM 51 N N9 . DG A 1 3 ? 28.952 40.018 14.659 1.00 24.93 ? 3 DG A N9 1 ATOM 52 C C8 . DG A 1 3 ? 30.195 40.434 14.262 1.00 20.32 ? 3 DG A C8 1 ATOM 53 N N7 . DG A 1 3 ? 30.682 39.707 13.297 1.00 19.91 ? 3 DG A N7 1 ATOM 54 C C5 . DG A 1 3 ? 29.704 38.747 13.061 1.00 20.54 ? 3 DG A C5 1 ATOM 55 C C6 . DG A 1 3 ? 29.683 37.655 12.153 1.00 18.17 ? 3 DG A C6 1 ATOM 56 O O6 . DG A 1 3 ? 30.528 37.351 11.292 1.00 19.67 ? 3 DG A O6 1 ATOM 57 N N1 . DG A 1 3 ? 28.529 36.889 12.307 1.00 16.77 ? 3 DG A N1 1 ATOM 58 C C2 . DG A 1 3 ? 27.528 37.151 13.210 1.00 19.82 ? 3 DG A C2 1 ATOM 59 N N2 . DG A 1 3 ? 26.492 36.313 13.223 1.00 19.39 ? 3 DG A N2 1 ATOM 60 N N3 . DG A 1 3 ? 27.534 38.170 14.049 1.00 20.39 ? 3 DG A N3 1 ATOM 61 C C4 . DG A 1 3 ? 28.642 38.919 13.913 1.00 21.39 ? 3 DG A C4 1 ATOM 62 P P . DC A 1 4 ? 29.380 39.055 19.911 1.00 37.37 ? 4 DC A P 1 ATOM 63 O OP1 . DC A 1 4 ? 28.961 39.162 21.332 1.00 41.96 ? 4 DC A OP1 1 ATOM 64 O OP2 . DC A 1 4 ? 30.833 39.055 19.556 1.00 37.88 ? 4 DC A OP2 1 ATOM 65 O "O5'" . DC A 1 4 ? 28.642 37.793 19.266 1.00 35.04 ? 4 DC A "O5'" 1 ATOM 66 C "C5'" . DC A 1 4 ? 27.223 37.571 19.442 1.00 29.52 ? 4 DC A "C5'" 1 ATOM 67 C "C4'" . DC A 1 4 ? 26.799 36.259 18.820 1.00 24.35 ? 4 DC A "C4'" 1 ATOM 68 O "O4'" . DC A 1 4 ? 26.842 36.313 17.382 1.00 25.11 ? 4 DC A "O4'" 1 ATOM 69 C "C3'" . DC A 1 4 ? 27.719 35.111 19.184 1.00 23.55 ? 4 DC A "C3'" 1 ATOM 70 O "O3'" . DC A 1 4 ? 27.314 34.558 20.431 1.00 25.89 ? 4 DC A "O3'" 1 ATOM 71 C "C2'" . DC A 1 4 ? 27.433 34.134 18.065 1.00 22.63 ? 4 DC A "C2'" 1 ATOM 72 C "C1'" . DC A 1 4 ? 27.319 35.072 16.878 1.00 23.73 ? 4 DC A "C1'" 1 ATOM 73 N N1 . DC A 1 4 ? 28.579 35.318 16.157 1.00 21.85 ? 4 DC A N1 1 ATOM 74 C C2 . DC A 1 4 ? 28.907 34.455 15.118 1.00 18.16 ? 4 DC A C2 1 ATOM 75 O O2 . DC A 1 4 ? 28.169 33.506 14.884 1.00 20.14 ? 4 DC A O2 1 ATOM 76 N N3 . DC A 1 4 ? 30.026 34.662 14.392 1.00 20.48 ? 4 DC A N3 1 ATOM 77 C C4 . DC A 1 4 ? 30.832 35.682 14.691 1.00 18.71 ? 4 DC A C4 1 ATOM 78 N N4 . DC A 1 4 ? 31.933 35.829 13.933 1.00 17.79 ? 4 DC A N4 1 ATOM 79 C C5 . DC A 1 4 ? 30.541 36.580 15.769 1.00 18.91 ? 4 DC A C5 1 ATOM 80 C C6 . DC A 1 4 ? 29.410 36.361 16.470 1.00 20.70 ? 4 DC A C6 1 ATOM 81 P P . DG A 1 5 ? 28.257 33.464 21.129 1.00 27.14 ? 5 DG A P 1 ATOM 82 O OP1 . DG A 1 5 ? 27.763 33.246 22.515 1.00 29.63 ? 5 DG A OP1 1 ATOM 83 O OP2 . DG A 1 5 ? 29.657 33.866 20.917 1.00 32.25 ? 5 DG A OP2 1 ATOM 84 O "O5'" . DG A 1 5 ? 28.019 32.188 20.201 1.00 26.93 ? 5 DG A "O5'" 1 ATOM 85 C "C5'" . DG A 1 5 ? 29.019 31.166 20.043 1.00 22.36 ? 5 DG A "C5'" 1 ATOM 86 C "C4'" . DG A 1 5 ? 28.625 30.233 18.922 1.00 20.09 ? 5 DG A "C4'" 1 ATOM 87 O "O4'" . DG A 1 5 ? 28.591 31.011 17.711 1.00 19.26 ? 5 DG A "O4'" 1 ATOM 88 C "C3'" . DG A 1 5 ? 29.635 29.126 18.653 1.00 21.07 ? 5 DG A "C3'" 1 ATOM 89 O "O3'" . DG A 1 5 ? 29.258 27.973 19.419 1.00 26.29 ? 5 DG A "O3'" 1 ATOM 90 C "C2'" . DG A 1 5 ? 29.405 28.868 17.180 1.00 17.09 ? 5 DG A "C2'" 1 ATOM 91 C "C1'" . DG A 1 5 ? 29.161 30.268 16.650 1.00 16.63 ? 5 DG A "C1'" 1 ATOM 92 N N9 . DG A 1 5 ? 30.373 30.959 16.247 1.00 16.42 ? 5 DG A N9 1 ATOM 93 C C8 . DG A 1 5 ? 30.970 32.024 16.875 1.00 14.62 ? 5 DG A C8 1 ATOM 94 N N7 . DG A 1 5 ? 32.033 32.443 16.247 1.00 15.22 ? 5 DG A N7 1 ATOM 95 C C5 . DG A 1 5 ? 32.143 31.602 15.141 1.00 13.93 ? 5 DG A C5 1 ATOM 96 C C6 . DG A 1 5 ? 33.108 31.557 14.095 1.00 13.93 ? 5 DG A C6 1 ATOM 97 O O6 . DG A 1 5 ? 34.091 32.296 13.908 1.00 16.02 ? 5 DG A O6 1 ATOM 98 N N1 . DG A 1 5 ? 32.853 30.510 13.213 1.00 15.68 ? 5 DG A N1 1 ATOM 99 C C2 . DG A 1 5 ? 31.821 29.609 13.331 1.00 15.84 ? 5 DG A C2 1 ATOM 100 N N2 . DG A 1 5 ? 31.763 28.636 12.416 1.00 13.79 ? 5 DG A N2 1 ATOM 101 N N3 . DG A 1 5 ? 30.913 29.649 14.286 1.00 16.64 ? 5 DG A N3 1 ATOM 102 C C4 . DG A 1 5 ? 31.132 30.669 15.144 1.00 15.62 ? 5 DG A C4 1 ATOM 103 P P . DC A 1 6 ? 30.385 26.995 20.018 1.00 26.57 ? 6 DC A P 1 ATOM 104 O OP1 . DC A 1 6 ? 29.686 26.044 20.906 1.00 31.30 ? 6 DC A OP1 1 ATOM 105 O OP2 . DC A 1 6 ? 31.490 27.828 20.567 1.00 27.96 ? 6 DC A OP2 1 ATOM 106 O "O5'" . DC A 1 6 ? 30.906 26.162 18.770 1.00 23.63 ? 6 DC A "O5'" 1 ATOM 107 C "C5'" . DC A 1 6 ? 30.004 25.341 18.052 1.00 21.98 ? 6 DC A "C5'" 1 ATOM 108 C "C4'" . DC A 1 6 ? 30.692 24.805 16.825 1.00 23.62 ? 6 DC A "C4'" 1 ATOM 109 O "O4'" . DC A 1 6 ? 30.843 25.909 15.918 1.00 22.47 ? 6 DC A "O4'" 1 ATOM 110 C "C3'" . DC A 1 6 ? 32.117 24.312 17.063 1.00 27.28 ? 6 DC A "C3'" 1 ATOM 111 O "O3'" . DC A 1 6 ? 32.145 22.944 17.515 1.00 32.98 ? 6 DC A "O3'" 1 ATOM 112 C "C2'" . DC A 1 6 ? 32.668 24.413 15.657 1.00 23.86 ? 6 DC A "C2'" 1 ATOM 113 C "C1'" . DC A 1 6 ? 32.077 25.745 15.225 1.00 20.98 ? 6 DC A "C1'" 1 ATOM 114 N N1 . DC A 1 6 ? 32.955 26.856 15.584 1.00 18.09 ? 6 DC A N1 1 ATOM 115 C C2 . DC A 1 6 ? 33.955 27.166 14.694 1.00 17.84 ? 6 DC A C2 1 ATOM 116 O O2 . DC A 1 6 ? 34.099 26.440 13.702 1.00 21.50 ? 6 DC A O2 1 ATOM 117 N N3 . DC A 1 6 ? 34.754 28.224 14.922 1.00 16.61 ? 6 DC A N3 1 ATOM 118 C C4 . DC A 1 6 ? 34.586 28.942 16.021 1.00 14.76 ? 6 DC A C4 1 ATOM 119 N N4 . DC A 1 6 ? 35.396 29.989 16.181 1.00 17.59 ? 6 DC A N4 1 ATOM 120 C C5 . DC A 1 6 ? 33.587 28.621 16.990 1.00 13.43 ? 6 DC A C5 1 ATOM 121 C C6 . DC A 1 6 ? 32.796 27.576 16.733 1.00 14.34 ? 6 DC A C6 1 ATOM 122 P P . DG A 1 7 ? 33.392 22.384 18.378 1.00 30.97 ? 7 DG A P 1 ATOM 123 O OP1 . DG A 1 7 ? 32.891 21.063 18.788 1.00 33.32 ? 7 DG A OP1 1 ATOM 124 O OP2 . DG A 1 7 ? 33.863 23.336 19.427 1.00 32.23 ? 7 DG A OP2 1 ATOM 125 O "O5'" . DG A 1 7 ? 34.558 22.221 17.301 1.00 27.49 ? 7 DG A "O5'" 1 ATOM 126 C "C5'" . DG A 1 7 ? 34.454 21.293 16.222 1.00 23.96 ? 7 DG A "C5'" 1 ATOM 127 C "C4'" . DG A 1 7 ? 35.586 21.520 15.248 1.00 22.97 ? 7 DG A "C4'" 1 ATOM 128 O "O4'" . DG A 1 7 ? 35.511 22.866 14.747 1.00 23.10 ? 7 DG A "O4'" 1 ATOM 129 C "C3'" . DG A 1 7 ? 36.986 21.420 15.824 1.00 24.73 ? 7 DG A "C3'" 1 ATOM 130 O "O3'" . DG A 1 7 ? 37.446 20.073 15.839 1.00 27.51 ? 7 DG A "O3'" 1 ATOM 131 C "C2'" . DG A 1 7 ? 37.771 22.186 14.778 1.00 23.88 ? 7 DG A "C2'" 1 ATOM 132 C "C1'" . DG A 1 7 ? 36.827 23.328 14.457 1.00 20.97 ? 7 DG A "C1'" 1 ATOM 133 N N9 . DG A 1 7 ? 37.081 24.513 15.271 1.00 20.40 ? 7 DG A N9 1 ATOM 134 C C8 . DG A 1 7 ? 36.334 25.002 16.318 1.00 18.30 ? 7 DG A C8 1 ATOM 135 N N7 . DG A 1 7 ? 36.803 26.121 16.793 1.00 17.05 ? 7 DG A N7 1 ATOM 136 C C5 . DG A 1 7 ? 37.927 26.378 16.019 1.00 18.81 ? 7 DG A C5 1 ATOM 137 C C6 . DG A 1 7 ? 38.807 27.491 16.003 1.00 20.19 ? 7 DG A C6 1 ATOM 138 O O6 . DG A 1 7 ? 38.793 28.494 16.718 1.00 22.89 ? 7 DG A O6 1 ATOM 139 N N1 . DG A 1 7 ? 39.786 27.360 15.027 1.00 20.84 ? 7 DG A N1 1 ATOM 140 C C2 . DG A 1 7 ? 39.907 26.311 14.165 1.00 21.72 ? 7 DG A C2 1 ATOM 141 N N2 . DG A 1 7 ? 40.929 26.362 13.288 1.00 20.98 ? 7 DG A N2 1 ATOM 142 N N3 . DG A 1 7 ? 39.086 25.279 14.155 1.00 21.52 ? 7 DG A N3 1 ATOM 143 C C4 . DG A 1 7 ? 38.127 25.381 15.097 1.00 19.15 ? 7 DG A C4 1 ATOM 144 P P . DC A 1 8 ? 38.603 19.649 16.861 1.00 27.65 ? 8 DC A P 1 ATOM 145 O OP1 . DC A 1 8 ? 38.573 18.200 16.626 1.00 33.98 ? 8 DC A OP1 1 ATOM 146 O OP2 . DC A 1 8 ? 38.445 20.191 18.234 1.00 29.95 ? 8 DC A OP2 1 ATOM 147 O "O5'" . DC A 1 8 ? 39.957 20.198 16.256 1.00 27.01 ? 8 DC A "O5'" 1 ATOM 148 C "C5'" . DC A 1 8 ? 40.186 20.177 14.836 1.00 34.22 ? 8 DC A "C5'" 1 ATOM 149 C "C4'" . DC A 1 8 ? 41.554 20.749 14.536 1.00 39.39 ? 8 DC A "C4'" 1 ATOM 150 O "O4'" . DC A 1 8 ? 41.521 22.191 14.681 1.00 40.22 ? 8 DC A "O4'" 1 ATOM 151 C "C3'" . DC A 1 8 ? 42.598 20.236 15.534 1.00 41.98 ? 8 DC A "C3'" 1 ATOM 152 O "O3'" . DC A 1 8 ? 43.802 19.794 14.890 1.00 48.41 ? 8 DC A "O3'" 1 ATOM 153 C "C2'" . DC A 1 8 ? 42.830 21.406 16.469 1.00 39.68 ? 8 DC A "C2'" 1 ATOM 154 C "C1'" . DC A 1 8 ? 42.482 22.625 15.632 1.00 35.65 ? 8 DC A "C1'" 1 ATOM 155 N N1 . DC A 1 8 ? 41.886 23.699 16.452 1.00 31.99 ? 8 DC A N1 1 ATOM 156 C C2 . DC A 1 8 ? 42.463 24.974 16.420 1.00 26.88 ? 8 DC A C2 1 ATOM 157 O O2 . DC A 1 8 ? 43.409 25.187 15.646 1.00 24.02 ? 8 DC A O2 1 ATOM 158 N N3 . DC A 1 8 ? 41.970 25.939 17.227 1.00 21.78 ? 8 DC A N3 1 ATOM 159 C C4 . DC A 1 8 ? 40.941 25.675 18.028 1.00 21.07 ? 8 DC A C4 1 ATOM 160 N N4 . DC A 1 8 ? 40.513 26.649 18.819 1.00 18.40 ? 8 DC A N4 1 ATOM 161 C C5 . DC A 1 8 ? 40.309 24.400 18.056 1.00 23.68 ? 8 DC A C5 1 ATOM 162 C C6 . DC A 1 8 ? 40.807 23.449 17.256 1.00 28.45 ? 8 DC A C6 1 HETATM 163 O O . HOH B 2 . ? 28.742 28.079 13.917 1.00 20.51 ? 9 HOH A O 1 HETATM 164 O O . HOH B 2 . ? 30.279 39.539 5.414 1.00 54.85 ? 10 HOH A O 1 HETATM 165 O O . HOH B 2 . ? 33.227 39.838 12.768 1.00 44.53 ? 11 HOH A O 1 HETATM 166 O O . HOH B 2 . ? 34.449 26.018 19.848 1.00 35.68 ? 12 HOH A O 1 HETATM 167 O O . HOH B 2 . ? 36.299 27.471 18.899 1.00 43.14 ? 13 HOH A O 1 HETATM 168 O O . HOH B 2 . ? 33.205 41.515 4.760 1.00 40.97 ? 14 HOH A O 1 HETATM 169 O O . HOH B 2 . ? 33.018 37.904 10.641 1.00 41.06 ? 15 HOH A O 1 HETATM 170 O O . HOH B 2 . ? 38.301 25.987 20.408 1.00 32.80 ? 16 HOH A O 1 HETATM 171 O O . HOH B 2 . ? 36.648 43.643 8.811 1.00 38.73 ? 17 HOH A O 1 HETATM 172 O O . HOH B 2 . ? 33.091 30.097 19.469 1.00 55.05 ? 18 HOH A O 1 HETATM 173 O O . HOH B 2 . ? 35.540 21.654 22.453 1.00 52.50 ? 19 HOH A O 1 HETATM 174 O O . HOH B 2 . ? 32.717 17.357 17.540 1.00 74.88 ? 20 HOH A O 1 HETATM 175 O O . HOH B 2 . ? 29.108 40.184 23.926 1.00 69.41 ? 21 HOH A O 1 HETATM 176 O O . HOH B 2 . ? 40.552 23.337 12.171 1.00 42.16 ? 22 HOH A O 1 HETATM 177 O O . HOH B 2 . ? 38.560 47.848 10.526 1.00 65.48 ? 23 HOH A O 1 HETATM 178 O O . HOH B 2 . ? 37.396 23.052 19.986 1.00 40.60 ? 24 HOH A O 1 HETATM 179 O O . HOH B 2 . ? 45.251 24.304 13.157 1.00 83.43 ? 25 HOH A O 1 HETATM 180 O O . HOH B 2 . ? 34.254 34.785 17.051 1.00 73.00 ? 26 HOH A O 1 #