data_345D # _entry.id 345D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 345D pdb_0000345d 10.2210/pdb345d/pdb RCSB ADHB100 ? ? WWPDB D_1000178814 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-08-29 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 345D _pdbx_database_status.recvd_initial_deposition_date 1997-08-15 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mooers, B.H.M.' 1 'Eichman, B.F.' 2 'Ho, P.S.' 3 # _citation.id primary _citation.title 'Structural Parameters from Single-Crystal Structures for Accurate Models of A-DNA' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mooers, B.H.M.' 1 ? primary 'Eichman, B.F.' 2 ? primary 'Ho, P.S.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*(5CM)P*GP*CP*GP*CP*GP*C)-3') ; 2442.620 1 ? ? ? ? 2 water nat water 18.015 16 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(5CM)(DG)(DC)(DG)(DC)(DG)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GCGCGCGC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 5CM n 1 3 DG n 1 4 DC n 1 5 DG n 1 6 DC n 1 7 DG n 1 8 DC n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 5CM 2 2 2 5CM +C A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DG 5 5 5 DG G A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DG 7 7 7 DG G A . n A 1 8 DC 8 8 8 DC C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 9 9 HOH HOH A . B 2 HOH 2 10 10 HOH HOH A . B 2 HOH 3 11 11 HOH HOH A . B 2 HOH 4 12 12 HOH HOH A . B 2 HOH 5 13 13 HOH HOH A . B 2 HOH 6 14 14 HOH HOH A . B 2 HOH 7 15 15 HOH HOH A . B 2 HOH 8 16 16 HOH HOH A . B 2 HOH 9 17 17 HOH HOH A . B 2 HOH 10 18 18 HOH HOH A . B 2 HOH 11 19 19 HOH HOH A . B 2 HOH 12 20 20 HOH HOH A . B 2 HOH 13 21 21 HOH HOH A . B 2 HOH 14 22 22 HOH HOH A . B 2 HOH 15 23 23 HOH HOH A . B 2 HOH 16 24 24 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XTALVIEW refinement . ? 1 X-PLOR 'model building' . ? 2 X-PLOR refinement 3.1 ? 3 SAINT 'data reduction' . ? 4 SAINT 'data scaling' . ? 5 SCALEPACK 'data scaling' . ? 6 X-PLOR phasing . ? 7 # _cell.entry_id 345D _cell.length_a 43.070 _cell.length_b 43.070 _cell.length_c 25.360 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 345D _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # _exptl.entry_id 345D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.41 _exptl_crystal.density_percent_sol 48.91 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'pH 7.00' _exptl_crystal_grow.pdbx_pH_range ? # _exptl_crystal_grow_comp.crystal_id 1 _exptl_crystal_grow_comp.id 1 _exptl_crystal_grow_comp.sol_id 1 _exptl_crystal_grow_comp.name WATER _exptl_crystal_grow_comp.volume ? _exptl_crystal_grow_comp.conc ? _exptl_crystal_grow_comp.details ? # _diffrn.id 1 _diffrn.ambient_temp 298.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type 'SIEMENS HI-STAR' _diffrn_detector.pdbx_collection_date 1996-05-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 345D _reflns.observed_criterion_sigma_I 2.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 15.300 _reflns.d_resolution_high 1.680 _reflns.number_obs 2847 _reflns.number_all ? _reflns.percent_possible_obs 86.030 _reflns.pdbx_Rmerge_I_obs 0.03 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.500 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 345D _refine.ls_number_reflns_obs 1442 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 1.850 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.206 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.206 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 24.91 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 161 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 16 _refine_hist.number_atoms_total 178 _refine_hist.d_res_high 1.850 _refine_hist.d_res_low 8.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.49 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_xplor_file.serial_no 1 _pdbx_xplor_file.param_file PAR.DNA _pdbx_xplor_file.topol_file TOP.DNA _pdbx_xplor_file.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 345D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 345D _struct.title 'STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 345D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'A-DNA, DOUBLE HELIX, MODIFIED, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 345D _struct_ref.pdbx_db_accession 345D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 345D _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 345D _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 25.3600000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 1 "O3'" ? ? ? 1_555 A 5CM 2 P ? ? A DG 1 A 5CM 2 1_555 ? ? ? ? ? ? ? 1.596 ? ? covale2 covale both ? A 5CM 2 "O3'" ? ? ? 1_555 A DG 3 P ? ? A 5CM 2 A DG 3 1_555 ? ? ? ? ? ? ? 1.605 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A 5CM 2 N3 ? ? ? 1_555 A DG 7 N1 ? ? A 5CM 2 A DG 7 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A 5CM 2 N4 ? ? ? 1_555 A DG 7 O6 ? ? A 5CM 2 A DG 7 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A 5CM 2 O2 ? ? ? 1_555 A DG 7 N2 ? ? A 5CM 2 A DG 7 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 3 A DC 6 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 3 A DC 6 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 3 A DC 6 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 N3 ? ? ? 1_555 A DG 5 N1 ? ? A DC 4 A DG 5 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DG 5 O6 ? ? A DC 4 A DG 5 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 4 O2 ? ? ? 1_555 A DG 5 N2 ? ? A DC 4 A DG 5 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DC 4 N3 ? ? A DG 5 A DC 4 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DC 4 O2 ? ? A DG 5 A DC 4 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DC 4 N4 ? ? A DG 5 A DC 4 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 6 A DG 3 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 6 A DG 3 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 6 A DG 3 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A 5CM 2 N3 ? ? A DG 7 A 5CM 2 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A 5CM 2 O2 ? ? A DG 7 A 5CM 2 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A 5CM 2 N4 ? ? A DG 7 A 5CM 2 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id 5CM _pdbx_struct_mod_residue.label_seq_id 2 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id 5CM _pdbx_struct_mod_residue.auth_seq_id 2 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DC _pdbx_struct_mod_residue.details ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5CM N1 N N N 1 5CM C2 C N N 2 5CM N3 N N N 3 5CM C4 C N N 4 5CM C5 C N N 5 5CM C5A C N N 6 5CM C6 C N N 7 5CM O2 O N N 8 5CM N4 N N N 9 5CM "C1'" C N R 10 5CM "C2'" C N N 11 5CM "C3'" C N S 12 5CM "C4'" C N R 13 5CM "O4'" O N N 14 5CM "O3'" O N N 15 5CM "C5'" C N N 16 5CM "O5'" O N N 17 5CM P P N N 18 5CM OP1 O N N 19 5CM OP2 O N N 20 5CM OP3 O N N 21 5CM H5A1 H N N 22 5CM H5A2 H N N 23 5CM H5A3 H N N 24 5CM H6 H N N 25 5CM HN41 H N N 26 5CM HN42 H N N 27 5CM "H1'" H N N 28 5CM "H2'" H N N 29 5CM "H2''" H N N 30 5CM "H3'" H N N 31 5CM "H4'" H N N 32 5CM "HO3'" H N N 33 5CM "H5'" H N N 34 5CM "H5''" H N N 35 5CM HOP2 H N N 36 5CM HOP3 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 HOH O O N N 109 HOH H1 H N N 110 HOH H2 H N N 111 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5CM N1 C2 sing N N 1 5CM N1 C6 sing N N 2 5CM N1 "C1'" sing N N 3 5CM C2 N3 sing N N 4 5CM C2 O2 doub N N 5 5CM N3 C4 doub N N 6 5CM C4 C5 sing N N 7 5CM C4 N4 sing N N 8 5CM C5 C5A sing N N 9 5CM C5 C6 doub N N 10 5CM C5A H5A1 sing N N 11 5CM C5A H5A2 sing N N 12 5CM C5A H5A3 sing N N 13 5CM C6 H6 sing N N 14 5CM N4 HN41 sing N N 15 5CM N4 HN42 sing N N 16 5CM "C1'" "C2'" sing N N 17 5CM "C1'" "O4'" sing N N 18 5CM "C1'" "H1'" sing N N 19 5CM "C2'" "C3'" sing N N 20 5CM "C2'" "H2'" sing N N 21 5CM "C2'" "H2''" sing N N 22 5CM "C3'" "C4'" sing N N 23 5CM "C3'" "O3'" sing N N 24 5CM "C3'" "H3'" sing N N 25 5CM "C4'" "O4'" sing N N 26 5CM "C4'" "C5'" sing N N 27 5CM "C4'" "H4'" sing N N 28 5CM "O3'" "HO3'" sing N N 29 5CM "C5'" "O5'" sing N N 30 5CM "C5'" "H5'" sing N N 31 5CM "C5'" "H5''" sing N N 32 5CM "O5'" P sing N N 33 5CM P OP1 doub N N 34 5CM P OP2 sing N N 35 5CM P OP3 sing N N 36 5CM OP2 HOP2 sing N N 37 5CM OP3 HOP3 sing N N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 HOH O H1 sing N N 113 HOH O H2 sing N N 114 # _ndb_struct_conf_na.entry_id 345D _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 8 7_556 -0.405 -0.150 -0.114 -6.001 -8.062 -2.058 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1 1 A 5CM 2 1_555 A DG 7 7_556 0.366 -0.053 0.036 5.924 -11.394 2.197 2 A_5CM2:DG7_A A 2 ? A 7 ? 19 1 1 A DG 3 1_555 A DC 6 7_556 -0.300 -0.160 -0.040 -6.248 -12.692 3.505 3 A_DG3:DC6_A A 3 ? A 6 ? 19 1 1 A DC 4 1_555 A DG 5 7_556 0.149 -0.049 0.144 -4.911 -5.712 4.277 4 A_DC4:DG5_A A 4 ? A 5 ? 19 1 1 A DG 5 1_555 A DC 4 7_556 -0.149 -0.049 0.144 4.911 -5.712 4.277 5 A_DG5:DC4_A A 5 ? A 4 ? 19 1 1 A DC 6 1_555 A DG 3 7_556 0.300 -0.160 -0.040 6.248 -12.692 3.505 6 A_DC6:DG3_A A 6 ? A 3 ? 19 1 1 A DG 7 1_555 A 5CM 2 7_556 -0.366 -0.053 0.036 -5.924 -11.394 2.197 7 A_DG7:5CM2_A A 7 ? A 2 ? 19 1 1 A DC 8 1_555 A DG 1 7_556 0.405 -0.150 -0.114 6.001 -8.062 -2.058 8 A_DC8:DG1_A A 8 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 8 7_556 A 5CM 2 1_555 A DG 7 7_556 0.270 -1.260 3.133 -2.131 4.242 33.371 -2.816 -0.788 2.933 7.340 3.687 33.698 1 AA_DG15CM2:DG7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ? 1 A 5CM 2 1_555 A DG 7 7_556 A DG 3 1_555 A DC 6 7_556 -0.027 -1.620 3.614 0.832 10.672 29.227 -5.112 0.213 2.858 20.310 -1.583 31.085 2 AA_5CM2DG3:DC6DG7_AA A 2 ? A 7 ? A 3 ? A 6 ? 1 A DG 3 1_555 A DC 6 7_556 A DC 4 1_555 A DG 5 7_556 0.034 -1.317 3.306 -1.848 2.530 38.444 -2.306 -0.279 3.212 3.835 2.801 38.567 3 AA_DG3DC4:DG5DC6_AA A 3 ? A 6 ? A 4 ? A 5 ? 1 A DC 4 1_555 A DG 5 7_556 A DG 5 1_555 A DC 4 7_556 0.000 -1.965 3.167 0.000 1.140 21.349 -5.741 0.000 3.059 3.075 0.000 21.379 4 AA_DC4DG5:DC4DG5_AA A 4 ? A 5 ? A 5 ? A 4 ? 1 A DG 5 1_555 A DC 4 7_556 A DC 6 1_555 A DG 3 7_556 -0.034 -1.317 3.306 1.848 2.530 38.444 -2.306 0.279 3.212 3.835 -2.801 38.567 5 AA_DG5DC6:DG3DC4_AA A 5 ? A 4 ? A 6 ? A 3 ? 1 A DC 6 1_555 A DG 3 7_556 A DG 7 1_555 A 5CM 2 7_556 0.027 -1.620 3.614 -0.832 10.672 29.227 -5.112 -0.213 2.858 20.310 1.583 31.085 6 AA_DC6DG7:5CM2DG3_AA A 6 ? A 3 ? A 7 ? A 2 ? 1 A DG 7 1_555 A 5CM 2 7_556 A DC 8 1_555 A DG 1 7_556 -0.270 -1.260 3.133 2.131 4.242 33.371 -2.816 0.788 2.933 7.340 -3.687 33.698 7 AA_DG7DC8:DG15CM2_AA A 7 ? A 2 ? A 8 ? A 1 ? # _atom_sites.entry_id 345D _atom_sites.fract_transf_matrix[1][1] 0.023218 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023218 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.039432 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? 35.646 45.267 6.844 1.00 26.58 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? 35.877 46.355 7.755 1.00 26.39 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? 34.656 47.025 8.343 1.00 22.81 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? 33.539 47.038 7.431 1.00 22.40 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? 34.143 46.327 9.585 1.00 23.58 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? 34.840 46.815 10.726 1.00 27.42 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? 32.701 46.781 9.617 1.00 21.25 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? 32.337 46.775 8.143 1.00 22.38 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? 31.814 45.499 7.671 1.00 24.53 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? 32.451 44.612 6.839 1.00 24.42 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? 31.729 43.558 6.562 1.00 23.49 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? 30.543 43.762 7.252 1.00 24.50 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? 29.357 42.990 7.289 1.00 22.38 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? 29.120 41.920 6.742 1.00 22.44 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? 28.385 43.585 8.070 1.00 21.83 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? 28.537 44.760 8.743 1.00 21.71 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? 27.504 45.155 9.473 1.00 21.23 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? 29.623 45.497 8.714 1.00 24.20 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? 30.583 44.947 7.953 1.00 24.56 ? 1 DG A C4 1 HETATM 20 N N1 . 5CM A 1 2 ? 30.524 43.565 11.664 1.00 24.47 ? 2 5CM A N1 1 HETATM 21 C C2 . 5CM A 1 2 ? 29.495 42.688 11.401 1.00 24.02 ? 2 5CM A C2 1 HETATM 22 N N3 . 5CM A 1 2 ? 29.694 41.670 10.549 1.00 21.66 ? 2 5CM A N3 1 HETATM 23 C C4 . 5CM A 1 2 ? 30.878 41.506 9.975 1.00 21.87 ? 2 5CM A C4 1 HETATM 24 C C5 . 5CM A 1 2 ? 31.957 42.391 10.222 1.00 22.80 ? 2 5CM A C5 1 HETATM 25 C C5A . 5CM A 1 2 ? 33.258 42.154 9.523 1.00 21.87 ? 2 5CM A C5A 1 HETATM 26 C C6 . 5CM A 1 2 ? 31.742 43.400 11.072 1.00 22.14 ? 2 5CM A C6 1 HETATM 27 O O2 . 5CM A 1 2 ? 28.411 42.865 11.970 1.00 25.10 ? 2 5CM A O2 1 HETATM 28 N N4 . 5CM A 1 2 ? 31.034 40.472 9.154 1.00 22.26 ? 2 5CM A N4 1 HETATM 29 C "C1'" . 5CM A 1 2 ? 30.242 44.668 12.589 1.00 27.36 ? 2 5CM A "C1'" 1 HETATM 30 C "C2'" . 5CM A 1 2 ? 30.360 44.257 14.049 1.00 27.00 ? 2 5CM A "C2'" 1 HETATM 31 C "C3'" . 5CM A 1 2 ? 31.795 44.635 14.349 1.00 29.61 ? 2 5CM A "C3'" 1 HETATM 32 C "C4'" . 5CM A 1 2 ? 31.896 45.947 13.597 1.00 29.07 ? 2 5CM A "C4'" 1 HETATM 33 O "O4'" . 5CM A 1 2 ? 31.196 45.707 12.363 1.00 28.55 ? 2 5CM A "O4'" 1 HETATM 34 O "O3'" . 5CM A 1 2 ? 31.976 44.866 15.741 1.00 36.64 ? 2 5CM A "O3'" 1 HETATM 35 C "C5'" . 5CM A 1 2 ? 33.319 46.400 13.379 1.00 26.66 ? 2 5CM A "C5'" 1 HETATM 36 O "O5'" . 5CM A 1 2 ? 34.023 45.412 12.651 1.00 28.66 ? 2 5CM A "O5'" 1 HETATM 37 P P . 5CM A 1 2 ? 35.332 45.790 11.846 1.00 28.56 ? 2 5CM A P 1 HETATM 38 O OP1 . 5CM A 1 2 ? 36.219 46.491 12.796 1.00 33.62 ? 2 5CM A OP1 1 HETATM 39 O OP2 . 5CM A 1 2 ? 35.804 44.577 11.145 1.00 28.79 ? 2 5CM A OP2 1 ATOM 40 P P . DG A 1 3 ? 32.282 43.627 16.714 1.00 38.99 ? 3 DG A P 1 ATOM 41 O OP1 . DG A 1 3 ? 32.446 44.224 18.057 1.00 41.65 ? 3 DG A OP1 1 ATOM 42 O OP2 . DG A 1 3 ? 33.371 42.794 16.129 1.00 39.50 ? 3 DG A OP2 1 ATOM 43 O "O5'" . DG A 1 3 ? 30.955 42.755 16.677 1.00 37.40 ? 3 DG A "O5'" 1 ATOM 44 C "C5'" . DG A 1 3 ? 29.926 42.950 17.635 1.00 33.55 ? 3 DG A "C5'" 1 ATOM 45 C "C4'" . DG A 1 3 ? 28.810 41.967 17.380 1.00 34.69 ? 3 DG A "C4'" 1 ATOM 46 O "O4'" . DG A 1 3 ? 28.559 41.893 15.966 1.00 34.42 ? 3 DG A "O4'" 1 ATOM 47 C "C3'" . DG A 1 3 ? 29.117 40.538 17.789 1.00 34.67 ? 3 DG A "C3'" 1 ATOM 48 O "O3'" . DG A 1 3 ? 28.770 40.317 19.154 1.00 37.58 ? 3 DG A "O3'" 1 ATOM 49 C "C2'" . DG A 1 3 ? 28.120 39.779 16.942 1.00 32.56 ? 3 DG A "C2'" 1 ATOM 50 C "C1'" . DG A 1 3 ? 28.093 40.583 15.655 1.00 30.07 ? 3 DG A "C1'" 1 ATOM 51 N N9 . DG A 1 3 ? 28.974 40.009 14.652 1.00 24.72 ? 3 DG A N9 1 ATOM 52 C C8 . DG A 1 3 ? 30.217 40.429 14.263 1.00 19.97 ? 3 DG A C8 1 ATOM 53 N N7 . DG A 1 3 ? 30.712 39.712 13.295 1.00 19.66 ? 3 DG A N7 1 ATOM 54 C C5 . DG A 1 3 ? 29.736 38.755 13.046 1.00 20.47 ? 3 DG A C5 1 ATOM 55 C C6 . DG A 1 3 ? 29.722 37.669 12.133 1.00 18.14 ? 3 DG A C6 1 ATOM 56 O O6 . DG A 1 3 ? 30.572 37.372 11.277 1.00 19.79 ? 3 DG A O6 1 ATOM 57 N N1 . DG A 1 3 ? 28.570 36.897 12.281 1.00 16.90 ? 3 DG A N1 1 ATOM 58 C C2 . DG A 1 3 ? 27.564 37.150 13.185 1.00 19.91 ? 3 DG A C2 1 ATOM 59 N N2 . DG A 1 3 ? 26.530 36.307 13.197 1.00 19.45 ? 3 DG A N2 1 ATOM 60 N N3 . DG A 1 3 ? 27.566 38.165 14.028 1.00 20.08 ? 3 DG A N3 1 ATOM 61 C C4 . DG A 1 3 ? 28.670 38.920 13.896 1.00 21.36 ? 3 DG A C4 1 ATOM 62 P P . DC A 1 4 ? 29.391 39.059 19.922 1.00 36.90 ? 4 DC A P 1 ATOM 63 O OP1 . DC A 1 4 ? 28.982 39.156 21.347 1.00 41.61 ? 4 DC A OP1 1 ATOM 64 O OP2 . DC A 1 4 ? 30.844 39.057 19.557 1.00 37.56 ? 4 DC A OP2 1 ATOM 65 O "O5'" . DC A 1 4 ? 28.655 37.790 19.288 1.00 34.43 ? 4 DC A "O5'" 1 ATOM 66 C "C5'" . DC A 1 4 ? 27.230 37.585 19.442 1.00 28.98 ? 4 DC A "C5'" 1 ATOM 67 C "C4'" . DC A 1 4 ? 26.813 36.264 18.834 1.00 24.13 ? 4 DC A "C4'" 1 ATOM 68 O "O4'" . DC A 1 4 ? 26.850 36.311 17.395 1.00 25.02 ? 4 DC A "O4'" 1 ATOM 69 C "C3'" . DC A 1 4 ? 27.732 35.119 19.204 1.00 23.46 ? 4 DC A "C3'" 1 ATOM 70 O "O3'" . DC A 1 4 ? 27.320 34.551 20.441 1.00 25.78 ? 4 DC A "O3'" 1 ATOM 71 C "C2'" . DC A 1 4 ? 27.467 34.140 18.083 1.00 22.52 ? 4 DC A "C2'" 1 ATOM 72 C "C1'" . DC A 1 4 ? 27.319 35.065 16.889 1.00 23.56 ? 4 DC A "C1'" 1 ATOM 73 N N1 . DC A 1 4 ? 28.570 35.308 16.154 1.00 21.68 ? 4 DC A N1 1 ATOM 74 C C2 . DC A 1 4 ? 28.894 34.444 15.115 1.00 18.12 ? 4 DC A C2 1 ATOM 75 O O2 . DC A 1 4 ? 28.157 33.496 14.883 1.00 20.20 ? 4 DC A O2 1 ATOM 76 N N3 . DC A 1 4 ? 30.012 34.655 14.389 1.00 20.35 ? 4 DC A N3 1 ATOM 77 C C4 . DC A 1 4 ? 30.816 35.678 14.682 1.00 19.14 ? 4 DC A C4 1 ATOM 78 N N4 . DC A 1 4 ? 31.917 35.833 13.921 1.00 17.80 ? 4 DC A N4 1 ATOM 79 C C5 . DC A 1 4 ? 30.527 36.577 15.758 1.00 19.08 ? 4 DC A C5 1 ATOM 80 C C6 . DC A 1 4 ? 29.399 36.355 16.462 1.00 20.71 ? 4 DC A C6 1 ATOM 81 P P . DG A 1 5 ? 28.259 33.458 21.140 1.00 27.05 ? 5 DG A P 1 ATOM 82 O OP1 . DG A 1 5 ? 27.773 33.237 22.529 1.00 29.58 ? 5 DG A OP1 1 ATOM 83 O OP2 . DG A 1 5 ? 29.659 33.851 20.914 1.00 32.02 ? 5 DG A OP2 1 ATOM 84 O "O5'" . DG A 1 5 ? 28.011 32.167 20.240 1.00 26.72 ? 5 DG A "O5'" 1 ATOM 85 C "C5'" . DG A 1 5 ? 29.034 31.176 20.046 1.00 22.21 ? 5 DG A "C5'" 1 ATOM 86 C "C4'" . DG A 1 5 ? 28.635 30.242 18.930 1.00 19.82 ? 5 DG A "C4'" 1 ATOM 87 O "O4'" . DG A 1 5 ? 28.591 31.009 17.713 1.00 19.04 ? 5 DG A "O4'" 1 ATOM 88 C "C3'" . DG A 1 5 ? 29.630 29.124 18.664 1.00 20.97 ? 5 DG A "C3'" 1 ATOM 89 O "O3'" . DG A 1 5 ? 29.251 27.970 19.429 1.00 26.05 ? 5 DG A "O3'" 1 ATOM 90 C "C2'" . DG A 1 5 ? 29.404 28.867 17.190 1.00 17.08 ? 5 DG A "C2'" 1 ATOM 91 C "C1'" . DG A 1 5 ? 29.163 30.266 16.654 1.00 16.42 ? 5 DG A "C1'" 1 ATOM 92 N N9 . DG A 1 5 ? 30.374 30.954 16.248 1.00 15.74 ? 5 DG A N9 1 ATOM 93 C C8 . DG A 1 5 ? 30.974 32.016 16.875 1.00 14.36 ? 5 DG A C8 1 ATOM 94 N N7 . DG A 1 5 ? 32.037 32.435 16.249 1.00 15.06 ? 5 DG A N7 1 ATOM 95 C C5 . DG A 1 5 ? 32.142 31.595 15.143 1.00 13.73 ? 5 DG A C5 1 ATOM 96 C C6 . DG A 1 5 ? 33.106 31.549 14.097 1.00 14.10 ? 5 DG A C6 1 ATOM 97 O O6 . DG A 1 5 ? 34.093 32.283 13.911 1.00 15.97 ? 5 DG A O6 1 ATOM 98 N N1 . DG A 1 5 ? 32.847 30.505 13.211 1.00 15.74 ? 5 DG A N1 1 ATOM 99 C C2 . DG A 1 5 ? 31.814 29.607 13.328 1.00 15.38 ? 5 DG A C2 1 ATOM 100 N N2 . DG A 1 5 ? 31.758 28.638 12.409 1.00 13.63 ? 5 DG A N2 1 ATOM 101 N N3 . DG A 1 5 ? 30.909 29.647 14.285 1.00 16.49 ? 5 DG A N3 1 ATOM 102 C C4 . DG A 1 5 ? 31.130 30.664 15.146 1.00 15.32 ? 5 DG A C4 1 ATOM 103 P P . DC A 1 6 ? 30.378 26.996 20.035 1.00 26.17 ? 6 DC A P 1 ATOM 104 O OP1 . DC A 1 6 ? 29.691 26.031 20.916 1.00 30.80 ? 6 DC A OP1 1 ATOM 105 O OP2 . DC A 1 6 ? 31.473 27.841 20.588 1.00 27.27 ? 6 DC A OP2 1 ATOM 106 O "O5'" . DC A 1 6 ? 30.910 26.179 18.784 1.00 23.24 ? 6 DC A "O5'" 1 ATOM 107 C "C5'" . DC A 1 6 ? 30.023 25.350 18.061 1.00 21.47 ? 6 DC A "C5'" 1 ATOM 108 C "C4'" . DC A 1 6 ? 30.715 24.821 16.832 1.00 23.59 ? 6 DC A "C4'" 1 ATOM 109 O "O4'" . DC A 1 6 ? 30.857 25.895 15.889 1.00 22.61 ? 6 DC A "O4'" 1 ATOM 110 C "C3'" . DC A 1 6 ? 32.134 24.316 17.058 1.00 27.10 ? 6 DC A "C3'" 1 ATOM 111 O "O3'" . DC A 1 6 ? 32.133 22.950 17.511 1.00 32.81 ? 6 DC A "O3'" 1 ATOM 112 C "C2'" . DC A 1 6 ? 32.678 24.402 15.648 1.00 23.94 ? 6 DC A "C2'" 1 ATOM 113 C "C1'" . DC A 1 6 ? 32.095 25.733 15.203 1.00 20.89 ? 6 DC A "C1'" 1 ATOM 114 N N1 . DC A 1 6 ? 32.963 26.848 15.565 1.00 18.18 ? 6 DC A N1 1 ATOM 115 C C2 . DC A 1 6 ? 33.967 27.167 14.685 1.00 17.63 ? 6 DC A C2 1 ATOM 116 O O2 . DC A 1 6 ? 34.122 26.443 13.692 1.00 21.05 ? 6 DC A O2 1 ATOM 117 N N3 . DC A 1 6 ? 34.754 28.234 14.925 1.00 16.24 ? 6 DC A N3 1 ATOM 118 C C4 . DC A 1 6 ? 34.572 28.949 16.026 1.00 14.56 ? 6 DC A C4 1 ATOM 119 N N4 . DC A 1 6 ? 35.372 29.999 16.204 1.00 17.24 ? 6 DC A N4 1 ATOM 120 C C5 . DC A 1 6 ? 33.565 28.619 16.982 1.00 13.22 ? 6 DC A C5 1 ATOM 121 C C6 . DC A 1 6 ? 32.788 27.566 16.713 1.00 14.33 ? 6 DC A C6 1 ATOM 122 P P . DG A 1 7 ? 33.377 22.365 18.360 1.00 31.40 ? 7 DG A P 1 ATOM 123 O OP1 . DG A 1 7 ? 32.896 21.024 18.725 1.00 34.14 ? 7 DG A OP1 1 ATOM 124 O OP2 . DG A 1 7 ? 33.831 23.296 19.433 1.00 32.15 ? 7 DG A OP2 1 ATOM 125 O "O5'" . DG A 1 7 ? 34.548 22.244 17.286 1.00 27.75 ? 7 DG A "O5'" 1 ATOM 126 C "C5'" . DG A 1 7 ? 34.483 21.285 16.232 1.00 24.13 ? 7 DG A "C5'" 1 ATOM 127 C "C4'" . DG A 1 7 ? 35.606 21.526 15.253 1.00 22.89 ? 7 DG A "C4'" 1 ATOM 128 O "O4'" . DG A 1 7 ? 35.528 22.865 14.740 1.00 23.11 ? 7 DG A "O4'" 1 ATOM 129 C "C3'" . DG A 1 7 ? 37.006 21.426 15.826 1.00 24.73 ? 7 DG A "C3'" 1 ATOM 130 O "O3'" . DG A 1 7 ? 37.450 20.071 15.833 1.00 27.35 ? 7 DG A "O3'" 1 ATOM 131 C "C2'" . DG A 1 7 ? 37.793 22.191 14.782 1.00 24.18 ? 7 DG A "C2'" 1 ATOM 132 C "C1'" . DG A 1 7 ? 36.846 23.330 14.450 1.00 21.24 ? 7 DG A "C1'" 1 ATOM 133 N N9 . DG A 1 7 ? 37.099 24.514 15.262 1.00 20.17 ? 7 DG A N9 1 ATOM 134 C C8 . DG A 1 7 ? 36.353 25.000 16.309 1.00 17.94 ? 7 DG A C8 1 ATOM 135 N N7 . DG A 1 7 ? 36.821 26.119 16.786 1.00 16.56 ? 7 DG A N7 1 ATOM 136 C C5 . DG A 1 7 ? 37.947 26.379 16.013 1.00 18.53 ? 7 DG A C5 1 ATOM 137 C C6 . DG A 1 7 ? 38.824 27.493 16.000 1.00 19.91 ? 7 DG A C6 1 ATOM 138 O O6 . DG A 1 7 ? 38.804 28.495 16.713 1.00 22.64 ? 7 DG A O6 1 ATOM 139 N N1 . DG A 1 7 ? 39.802 27.367 15.024 1.00 20.49 ? 7 DG A N1 1 ATOM 140 C C2 . DG A 1 7 ? 39.923 26.320 14.158 1.00 21.93 ? 7 DG A C2 1 ATOM 141 N N2 . DG A 1 7 ? 40.941 26.383 13.274 1.00 20.90 ? 7 DG A N2 1 ATOM 142 N N3 . DG A 1 7 ? 39.105 25.285 14.147 1.00 21.31 ? 7 DG A N3 1 ATOM 143 C C4 . DG A 1 7 ? 38.146 25.383 15.091 1.00 19.14 ? 7 DG A C4 1 ATOM 144 P P . DC A 1 8 ? 38.613 19.624 16.838 1.00 27.80 ? 8 DC A P 1 ATOM 145 O OP1 . DC A 1 8 ? 38.606 18.168 16.651 1.00 34.64 ? 8 DC A OP1 1 ATOM 146 O OP2 . DC A 1 8 ? 38.459 20.202 18.196 1.00 29.65 ? 8 DC A OP2 1 ATOM 147 O "O5'" . DC A 1 8 ? 39.959 20.166 16.208 1.00 27.32 ? 8 DC A "O5'" 1 ATOM 148 C "C5'" . DC A 1 8 ? 40.159 20.165 14.782 1.00 35.04 ? 8 DC A "C5'" 1 ATOM 149 C "C4'" . DC A 1 8 ? 41.493 20.799 14.459 1.00 40.52 ? 8 DC A "C4'" 1 ATOM 150 O "O4'" . DC A 1 8 ? 41.420 22.232 14.678 1.00 41.41 ? 8 DC A "O4'" 1 ATOM 151 C "C3'" . DC A 1 8 ? 42.571 20.270 15.411 1.00 43.44 ? 8 DC A "C3'" 1 ATOM 152 O "O3'" . DC A 1 8 ? 43.782 19.868 14.754 1.00 49.94 ? 8 DC A "O3'" 1 ATOM 153 C "C2'" . DC A 1 8 ? 42.778 21.399 16.402 1.00 40.89 ? 8 DC A "C2'" 1 ATOM 154 C "C1'" . DC A 1 8 ? 42.403 22.643 15.616 1.00 36.44 ? 8 DC A "C1'" 1 ATOM 155 N N1 . DC A 1 8 ? 41.827 23.703 16.467 1.00 31.97 ? 8 DC A N1 1 ATOM 156 C C2 . DC A 1 8 ? 42.420 24.971 16.452 1.00 26.97 ? 8 DC A C2 1 ATOM 157 O O2 . DC A 1 8 ? 43.376 25.178 15.691 1.00 24.32 ? 8 DC A O2 1 ATOM 158 N N3 . DC A 1 8 ? 41.939 25.934 17.264 1.00 21.46 ? 8 DC A N3 1 ATOM 159 C C4 . DC A 1 8 ? 40.910 25.673 18.068 1.00 21.06 ? 8 DC A C4 1 ATOM 160 N N4 . DC A 1 8 ? 40.493 26.647 18.861 1.00 18.76 ? 8 DC A N4 1 ATOM 161 C C5 . DC A 1 8 ? 40.270 24.399 18.094 1.00 22.41 ? 8 DC A C5 1 ATOM 162 C C6 . DC A 1 8 ? 40.750 23.453 17.278 1.00 27.48 ? 8 DC A C6 1 HETATM 163 O O . HOH B 2 . ? 28.742 28.079 13.917 1.00 20.43 ? 9 HOH A O 1 HETATM 164 O O . HOH B 2 . ? 30.387 39.552 5.540 1.00 56.38 ? 10 HOH A O 1 HETATM 165 O O . HOH B 2 . ? 33.072 39.745 12.669 1.00 43.38 ? 11 HOH A O 1 HETATM 166 O O . HOH B 2 . ? 34.449 26.027 19.871 1.00 36.51 ? 12 HOH A O 1 HETATM 167 O O . HOH B 2 . ? 36.324 27.461 18.896 1.00 41.81 ? 13 HOH A O 1 HETATM 168 O O . HOH B 2 . ? 33.296 41.509 4.779 1.00 42.19 ? 14 HOH A O 1 HETATM 169 O O . HOH B 2 . ? 32.930 37.886 10.634 1.00 39.53 ? 15 HOH A O 1 HETATM 170 O O . HOH B 2 . ? 38.299 25.976 20.417 1.00 32.01 ? 16 HOH A O 1 HETATM 171 O O . HOH B 2 . ? 36.605 43.647 8.786 1.00 38.12 ? 17 HOH A O 1 HETATM 172 O O . HOH B 2 . ? 33.109 30.173 19.483 1.00 53.04 ? 18 HOH A O 1 HETATM 173 O O . HOH B 2 . ? 35.554 21.654 22.436 1.00 50.57 ? 19 HOH A O 1 HETATM 174 O O . HOH B 2 . ? 29.183 40.298 23.917 1.00 68.54 ? 20 HOH A O 1 HETATM 175 O O . HOH B 2 . ? 40.426 23.413 12.208 1.00 40.24 ? 21 HOH A O 1 HETATM 176 O O . HOH B 2 . ? 38.710 47.903 10.577 1.00 66.76 ? 22 HOH A O 1 HETATM 177 O O . HOH B 2 . ? 37.447 23.056 19.932 1.00 40.37 ? 23 HOH A O 1 HETATM 178 O O . HOH B 2 . ? 34.135 34.640 17.292 1.00 85.12 ? 24 HOH A O 1 #